Query 024941
Match_columns 260
No_of_seqs 202 out of 692
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 17:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024941.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024941hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyuk1 f.23.15.1 (K:1-53) Sub 24.1 15 0.0011 23.8 1.6 26 41-67 21-48 (53)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 18.7 38 0.0028 18.7 2.3 18 8-25 5-22 (27)
3 d1iiea_ a.109.1.1 (A:) Class I 14.8 49 0.0035 22.7 2.5 28 22-49 31-60 (75)
4 d1vpua_ g.34.1.1 (A:) HIV-1 VP 14.0 24 0.0018 22.1 0.7 19 104-122 2-20 (45)
5 d1nekd_ f.21.2.2 (D:) Succinat 10.7 30 0.0022 24.7 0.3 32 65-96 53-84 (113)
6 d1m56d_ f.23.8.1 (D:) Bacteria 9.3 2E+02 0.015 17.3 3.9 26 54-79 13-38 (42)
7 d1qled_ f.23.8.1 (D:) Bacteria 8.8 2.2E+02 0.016 17.3 3.9 26 54-79 14-39 (43)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 7.6 1.9E+02 0.014 17.0 3.1 8 43-50 13-20 (37)
9 d1or7a1 a.4.13.2 (A:120-187) S 7.4 61 0.0045 20.3 0.8 16 240-255 49-64 (68)
10 d1rp3a2 a.4.13.2 (A:164-234) S 7.3 40 0.0029 21.2 -0.2 16 240-255 52-67 (71)
No 1
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.15 E-value=15 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhhhhH
Q 024941 41 CKYWILVAMLTVLERFLDA--IASWFPMY 67 (260)
Q Consensus 41 L~YWIV~al~t~~E~~~d~--~l~wlPfY 67 (260)
+.+|-..+.+.++ .+.|+ ++.|+|+|
T Consensus 21 ~~~~G~a~gl~lv-y~TDWklil~yvPyy 48 (53)
T d2fyuk1 21 ASLWGAVGAVGLV-WATDWRLILDWVPYI 48 (53)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHHTSSSSC
T ss_pred hhhhhhhhheeee-eeehHHHHHhhhhhh
Confidence 4566666666555 55655 67899987
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.67 E-value=38 Score=18.72 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.2
Q ss_pred HHHHHHHHhHhhHHHHHH
Q 024941 8 RCLILVFGYAYPAFECYK 25 (260)
Q Consensus 8 ~ll~~~iG~lYPaY~S~K 25 (260)
-++..+.|+.|-||+-||
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 345667788888888765
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.76 E-value=49 Score=22.74 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=17.2
Q ss_pred HHHHHHhcCc--ccHHHHHHHHHHHHHHHH
Q 024941 22 ECYKIVEKNR--VEIDQLRFWCKYWILVAM 49 (260)
Q Consensus 22 ~S~KALe~~~--~d~~~l~~WL~YWIV~al 49 (260)
+-++.|++.= .|=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 3455565431 122346899999999854
No 4
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=14.04 E-value=24 Score=22.12 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024941 104 DIDRRILELRARLWDLAIY 122 (260)
Q Consensus 104 ~ID~~L~~lr~ra~d~~~~ 122 (260)
+||+.+..+++||.|-...
T Consensus 2 kIdrLi~RIrERAEDSGNE 20 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSGNE 20 (45)
T ss_dssp CHHHHHHHHHHTTCHHHHT
T ss_pred cHHHHHHHHHHHcccCCCC
Confidence 5899999999998876543
No 5
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=10.66 E-value=30 Score=24.68 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhhcCCccchhhhhhhhcch
Q 024941 65 PMYGELKLAFFIYLWSPKTQGTGFVYQSVLRP 96 (260)
Q Consensus 65 PfY~~~Kl~fllWL~lP~t~GA~~IY~~fI~P 96 (260)
|+-..+=++|++-+.+....|-..|-+.++++
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 33334444555555555566788888888765
No 6
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.31 E-value=2e+02 Score=17.34 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhh
Q 024941 54 ERFLDAIASWFPMYGELKLAFFIYLW 79 (260)
Q Consensus 54 E~~~d~~l~wlPfY~~~Kl~fllWL~ 79 (260)
|.-++.|+.|.--...+-++++++|.
T Consensus 13 EKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 13 EKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555543
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=8.84 E-value=2.2e+02 Score=17.30 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhh
Q 024941 54 ERFLDAIASWFPMYGELKLAFFIYLW 79 (260)
Q Consensus 54 E~~~d~~l~wlPfY~~~Kl~fllWL~ 79 (260)
|--++.|+.|.--...+-++++++|.
T Consensus 14 EkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 14 QATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444555555554
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=7.56 E-value=1.9e+02 Score=17.03 Aligned_cols=8 Identities=25% Similarity=0.932 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 024941 43 YWILVAML 50 (260)
Q Consensus 43 YWIV~al~ 50 (260)
+|+.|+.+
T Consensus 13 Fw~FFagL 20 (37)
T d1eysh2 13 FWLFFFGL 20 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554433
No 9
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=7.37 E-value=61 Score=20.34 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=10.5
Q ss_pred CCcchhHHHHHHHHHh
Q 024941 240 GTPNESLLQARQRLRR 255 (260)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (260)
.+++-++++||.+||.
T Consensus 49 ~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 49 GTVRSRIFRAREAIDN 64 (68)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555667777777764
No 10
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=7.27 E-value=40 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=9.7
Q ss_pred CCcchhHHHHHHHHHh
Q 024941 240 GTPNESLLQARQRLRR 255 (260)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (260)
.++.-.+++||.+||+
T Consensus 52 ~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 52 SRVSQLKAKALERLRE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556667766665
Done!