Query 024943
Match_columns 260
No_of_seqs 200 out of 1456
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6.8E-46 1.5E-50 326.2 16.0 210 6-249 4-213 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 1.1E-21 2.3E-26 148.2 7.5 86 163-248 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 4.9E-21 1.1E-25 144.6 6.8 86 10-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 2.4E-13 5.1E-18 120.3 6.3 90 159-248 4-94 (243)
5 COG4095 Uncharacterized conser 99.3 4.1E-12 8.9E-17 94.8 6.3 84 160-246 4-87 (89)
6 COG4095 Uncharacterized conser 99.2 1.1E-10 2.5E-15 87.1 8.5 81 8-94 5-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.7 3.3E-06 7.2E-11 74.4 19.1 190 14-237 7-213 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 1.3E-05 2.8E-10 56.1 5.8 57 162-221 3-59 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 1.4E-05 3.1E-10 55.9 5.7 54 14-69 5-58 (61)
10 KOG3211 Predicted endoplasmic 97.7 0.00068 1.5E-08 58.8 12.3 194 9-248 32-227 (230)
11 KOG2913 Predicted membrane pro 96.7 0.027 5.9E-07 50.9 11.9 59 4-67 5-63 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.1 0.014 3.1E-07 51.4 6.1 50 161-213 4-53 (220)
13 PF03650 MPC: Uncharacterised 94.8 0.0097 2.1E-07 47.5 0.5 78 168-250 23-102 (119)
14 smart00679 CTNS Repeated motif 93.7 0.068 1.5E-06 32.2 2.5 27 25-51 2-28 (32)
15 PRK01021 lpxB lipid-A-disaccha 93.7 1.6 3.4E-05 44.1 13.4 88 162-255 141-228 (608)
16 PHA02246 hypothetical protein 93.4 4.2 9.1E-05 34.1 13.7 51 15-68 9-59 (192)
17 smart00679 CTNS Repeated motif 92.6 0.1 2.2E-06 31.4 2.1 28 178-205 2-29 (32)
18 PF10688 Imp-YgjV: Bacterial i 87.6 5.7 0.00012 33.3 9.3 65 158-237 90-154 (163)
19 KOG1589 Uncharacterized conser 85.7 0.23 5.1E-06 38.9 -0.1 58 190-247 44-103 (118)
20 KOG2913 Predicted membrane pro 84.8 2.6 5.7E-05 38.2 6.2 58 158-218 6-63 (260)
21 PF03650 MPC: Uncharacterised 84.2 0.41 8.8E-06 38.3 0.6 63 36-99 39-101 (119)
22 KOG1589 Uncharacterized conser 84.1 0.59 1.3E-05 36.7 1.5 59 36-95 43-101 (118)
23 PHA02246 hypothetical protein 79.4 16 0.00034 30.8 8.3 63 18-82 116-178 (192)
24 PF06946 Phage_holin_5: Phage 72.5 7.8 0.00017 29.6 4.4 59 197-255 35-93 (93)
25 PF07578 LAB_N: Lipid A Biosyn 72.0 11 0.00024 27.5 4.9 42 192-233 25-66 (72)
26 KOG3145 Cystine transporter Cy 69.2 86 0.0019 29.3 11.1 92 164-258 267-370 (372)
27 PF10688 Imp-YgjV: Bacterial i 68.4 16 0.00035 30.6 6.0 37 48-87 118-154 (163)
28 KOG3211 Predicted endoplasmic 68.2 13 0.00028 32.8 5.4 72 23-96 154-225 (230)
29 PF01034 Syndecan: Syndecan do 50.3 5.8 0.00013 28.3 0.2 25 232-256 23-51 (64)
30 COG3952 Predicted membrane pro 49.7 58 0.0013 25.6 5.6 58 187-244 48-105 (113)
31 PF07578 LAB_N: Lipid A Biosyn 48.7 34 0.00073 25.0 4.0 51 27-82 14-65 (72)
32 KOG2489 Transmembrane protein 39.2 2.5E+02 0.0054 28.2 9.4 184 18-210 328-515 (592)
33 KOG1590 Uncharacterized conser 30.1 49 0.0011 26.6 2.5 67 176-244 36-104 (132)
34 KOG4314 Predicted carbohydrate 28.3 1.3E+02 0.0028 26.6 5.1 53 155-207 126-178 (290)
35 PF05602 CLPTM1: Cleft lip and 26.5 1.5E+02 0.0033 28.7 5.8 71 14-87 305-376 (438)
36 PF07857 DUF1632: CEO family ( 26.2 1.3E+02 0.0029 27.1 5.0 66 161-226 180-254 (254)
37 TIGR00905 2A0302 transporter, 24.2 2.1E+02 0.0045 27.6 6.3 27 229-255 421-447 (473)
38 KOG2532 Permease of the major 23.9 3.3E+02 0.0073 26.6 7.7 82 13-96 267-355 (466)
39 PF15102 TMEM154: TMEM154 prot 23.8 1E+02 0.0022 25.6 3.4 29 221-249 60-88 (146)
40 PF01372 Melittin: Melittin; 23.7 1.3E+02 0.0027 17.4 2.8 16 23-38 9-24 (26)
41 PF05545 FixQ: Cbb3-type cytoc 23.1 64 0.0014 21.2 1.8 23 3-25 2-24 (49)
42 KOG3106 ER lumen protein retai 21.3 2.2E+02 0.0047 24.9 5.1 58 178-240 130-191 (212)
43 TIGR00341 conserved hypothetic 21.1 7E+02 0.015 23.4 9.5 50 199-248 245-294 (325)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6.8e-46 Score=326.17 Aligned_cols=210 Identities=44% Similarity=0.777 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHH
Q 024943 6 LLNFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 85 (260)
Q Consensus 6 ~~~~i~g~lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~ 85 (260)
....++|..|.+.++++|++|+|+++||+|+||+||+|++||+++.+||.+|+.|| .+++|+..++.+|++|++++.+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~~ 81 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIETV 81 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999 6776457899999999999999
Q ss_pred HHHHhhhcccCcccccCcccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Q 024943 86 YIILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVG 165 (260)
Q Consensus 86 y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 165 (260)
|+..|+.|+++|++. ........+. +..+++++....++++.+.+.+|
T Consensus 82 Yi~~f~~ya~~k~~~------------------------------~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~lG 129 (243)
T KOG1623|consen 82 YISIFLYYAPKKKTV------------------------------KIVLALVLGV--IGLIILLTLLLFHDPERRVSVLG 129 (243)
T ss_pred HHHHHheecCchhee------------------------------EeeehHHHHH--HHHHHHHHHHhcCCcceeeeeee
Confidence 999999999998852 0010111111 11222344445677788899999
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhheeeecC
Q 024943 166 LLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKE 245 (260)
Q Consensus 166 ~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~~y~~ 245 (260)
.+|++++++||+|||..+++|+|+||+|.||++++++.++++..|.+||++.+|.++.+||++|.+++++|+.+|+.||+
T Consensus 130 ~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~ 209 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPK 209 (243)
T ss_pred hhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 024943 246 TSGE 249 (260)
Q Consensus 246 ~~~~ 249 (260)
++.+
T Consensus 210 ~~~~ 213 (243)
T KOG1623|consen 210 TTEK 213 (243)
T ss_pred Cccc
Confidence 7743
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=1.1e-21 Score=148.20 Aligned_cols=86 Identities=37% Similarity=0.528 Sum_probs=83.8
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhheee
Q 024943 163 FVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFN 242 (260)
Q Consensus 163 ~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~~ 242 (260)
++|.+|++.++++++||++++++++|+||++++|.+++++.++||.+|+.||++.+|++++++|.+|.+++..|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024943 243 YKETSG 248 (260)
Q Consensus 243 y~~~~~ 248 (260)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998874
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=4.9e-21 Score=144.60 Aligned_cols=86 Identities=26% Similarity=0.588 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHHHH
Q 024943 10 FLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 89 (260)
Q Consensus 10 i~g~lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~~v 89 (260)
++|++|.++++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.|| ++.+| ++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999999999999999999 78877 59999999999999999999
Q ss_pred hhhcccCcc
Q 024943 90 FITYTEKDK 98 (260)
Q Consensus 90 ~~~y~~~~~ 98 (260)
|++|+++|+
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=120.32 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=85.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccC-CcceecchhhHHHHHHHHh
Q 024943 159 SRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW-DPFIYVPNGIGTILGIVQL 237 (260)
Q Consensus 159 ~~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~-D~~i~~pN~~G~~l~~~ql 237 (260)
.....+|..|.++++++|.+|.++++|+.|+||+|+.+..|++++++||.+|+.||.+.+ |..++..|.+|+.+.++++
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999887 8889999999999999999
Q ss_pred hheeeecCCCC
Q 024943 238 ALYFNYKETSG 248 (260)
Q Consensus 238 ~l~~~y~~~~~ 248 (260)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999988876
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=4.1e-12 Score=94.84 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=77.8
Q ss_pred hhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhh
Q 024943 160 RQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLAL 239 (260)
Q Consensus 160 ~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l 239 (260)
..+++|.+|+.++.++| +||+.+++|+||++++++.++........+|+.||++++|.++...|.++..++.+-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 35788999999999999 899999999999999999999999999999999999999999999999999999998888
Q ss_pred eeeecCC
Q 024943 240 YFNYKET 246 (260)
Q Consensus 240 ~~~y~~~ 246 (260)
...|..+
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 7777544
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.1e-10 Score=87.13 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHH
Q 024943 8 NFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 87 (260)
Q Consensus 8 ~~i~g~lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~ 87 (260)
.+..|..|.+.+...| +||..+++|+|+++++|+..|+.....+.+|+.|| ++.+| .|+...|.++..++..-+
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~liIl 78 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLIIL 78 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHHHH
Confidence 4567776666666554 99999999999999999999999999999999999 88876 599999999999999888
Q ss_pred HHhhhcc
Q 024943 88 ILFITYT 94 (260)
Q Consensus 88 ~v~~~y~ 94 (260)
....+|-
T Consensus 79 ~~kI~~~ 85 (89)
T COG4095 79 FYKIKYI 85 (89)
T ss_pred HHHHHHH
Confidence 7777764
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.69 E-value=3.3e-06 Score=74.40 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHh--------hhhhhccCceEEEee---hhHHHHH
Q 024943 14 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY--------GTPLVSADNILVTTV---NSIGAAF 82 (260)
Q Consensus 14 lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~Y--------G~~~l~~~~~~vi~~---N~~G~~l 82 (260)
+|.+..++-..+-+||+++.+|+||++++|+..+..-..+...|..| . ..++.+..-.. |-+-..+
T Consensus 7 lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~~~~~~~~~~v~~edl~~ai 83 (220)
T TIGR00951 7 LGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---ITNEFPLSSPGVTQNDVFFTL 83 (220)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hhhccccccCCCcHHHHHHHH
Confidence 34444444445679999999999999999999999999999999999 4 22222111111 3333222
Q ss_pred HHHHH-----HHhhhcccCcccccCcccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhccCc
Q 024943 83 QLVYI-----ILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNP 157 (260)
Q Consensus 83 ~~~y~-----~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (260)
+...+ .-+.+|.++..++ ++.... .......+.++...........+
T Consensus 84 ~~~il~~l~~~q~~~~~~~~~~~---------------------------s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 135 (220)
T TIGR00951 84 HAILICFIVLHQCGDYERGWQRV---------------------------SNPWIL-RILVALLACFATLLVALLSPITP 135 (220)
T ss_pred HHHHHHHHHHHHHhhcccccccc---------------------------chhHHH-HHHHHHHHHHHHHHHHHHhcCCh
Confidence 22222 2222333222221 000110 01001111111111111122334
Q ss_pred chhhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcc-cCCcceecchhhHHHHHHHH
Q 024943 158 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQ 236 (260)
Q Consensus 158 ~~~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l-~~D~~i~~pN~~G~~l~~~q 236 (260)
.+....++.+-..++++-+ +||++.-.|.||++++|..-....+..++.-+.-... .+|...+.--.++..++.+-
T Consensus 136 l~~l~~l~~iki~is~iky---iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~ 212 (220)
T TIGR00951 136 LAFVTMLSYIKVAVTLVKY---FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLF 212 (220)
T ss_pred HHHHHHHHHHHHHHHHHHH---hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655 8999999999999999999988888887666555543 35776666667777766654
Q ss_pred h
Q 024943 237 L 237 (260)
Q Consensus 237 l 237 (260)
+
T Consensus 213 ~ 213 (220)
T TIGR00951 213 A 213 (220)
T ss_pred H
Confidence 3
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.04 E-value=1.3e-05 Score=56.09 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcc
Q 024943 162 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 221 (260)
Q Consensus 162 ~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~ 221 (260)
+.+|.++.++....+ +||+.+.+|+||++++|+......++++.+|+.|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777777665555 899999999999999999999999999999999999877643
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.02 E-value=1.4e-05 Score=55.90 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCc
Q 024943 14 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN 69 (260)
Q Consensus 14 lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~ 69 (260)
+|.+..++...+.+||+++.+|+||++++|...+.....+..+|+.|+ ++.+++
T Consensus 5 ~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 5 LGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 445555566667899999999999999999999999999999999999 666543
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.73 E-value=0.00068 Score=58.77 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHHH
Q 024943 9 FFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 88 (260)
Q Consensus 9 ~i~g~lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~~ 88 (260)
...|+.....++.. -+||+.+|+.+||++++|...+..-+++-..-+.|. .+.+.++.-+--..=++++.+-++
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vili 105 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVILI 105 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHHH
Confidence 44455444444444 489999999999999999999999999999999999 454544444444444555554444
Q ss_pred Hhhh-cccCcccccCcccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhhH
Q 024943 89 LFIT-YTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLL 167 (260)
Q Consensus 89 v~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~i 167 (260)
.+.. |+-+... ....++. .+.++.. ..++.....++-..
T Consensus 106 ~~if~f~~~~~~------------------------------~v~~l~~-------~~~v~~~---~~sk~~p~~~~~L~ 145 (230)
T KOG3211|consen 106 LCIFHFSGQTVT------------------------------VVQFLGY-------IALVVSV---LASKALPLWIITLA 145 (230)
T ss_pred HHHHHhccceee------------------------------hhhHHHH-------HHHHHHH---HHHhhhhHHHHHHH
Confidence 4332 3211111 0111111 1111111 11222233444444
Q ss_pred HHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcc-cCCcceecchhhHHHHHHHHhhheeeecCC
Q 024943 168 SCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQLALYFNYKET 246 (260)
Q Consensus 168 a~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l-~~D~~i~~pN~~G~~l~~~ql~l~~~y~~~ 246 (260)
.+...-+.-.+=++|+..-.|+|+++.+++.-...++-.+..-+.+.+. ++|.-+...-.+...++.+-.+-...|+++
T Consensus 146 ~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 146 QNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred HhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4444434457789999999999999999999999999999999999987 468877777777777776665556666655
Q ss_pred CC
Q 024943 247 SG 248 (260)
Q Consensus 247 ~~ 248 (260)
+.
T Consensus 226 ~~ 227 (230)
T KOG3211|consen 226 AI 227 (230)
T ss_pred CC
Confidence 43
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.73 E-value=0.027 Score=50.93 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhcc
Q 024943 4 WLLLNFFLLVAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSA 67 (260)
Q Consensus 4 ~~~~~~i~g~lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~ 67 (260)
|..+..+. |++.+++-..+=+||+.+..|+||++++|+++.+.-.+....=+.|. .+.+
T Consensus 5 ~~~~s~~~---g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~ 63 (260)
T KOG2913|consen 5 NDTLSTIL---GILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQP 63 (260)
T ss_pred HHHHHHHH---HHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhcc
Confidence 44444444 55555555566799999999999999999999988888777777887 4543
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.08 E-value=0.014 Score=51.42 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=44.3
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhh
Q 024943 161 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 213 (260)
Q Consensus 161 ~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~Y 213 (260)
.+.+|+...+.....+ +||+.+..|+||++++|+.......+....|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4667887777776666 8999999999999999999999999999999999
No 13
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.78 E-value=0.0097 Score=47.46 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhccc--CCcceecchhhHHHHHHHHhhheeeecC
Q 024943 168 SCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKE 245 (260)
Q Consensus 168 a~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~--~D~~i~~pN~~G~~l~~~ql~l~~~y~~ 245 (260)
|.++.=.+-++++.++ +|..|.+|..+..+.++.+.+|.-|++.+ +|+.+...|+.-...+..|+.=+..|..
T Consensus 23 aP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 23 APVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred hhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444433334444443 58999999999999999999999999987 5888888899999999999999998876
Q ss_pred CCCCC
Q 024943 246 TSGEE 250 (260)
Q Consensus 246 ~~~~~ 250 (260)
.+++|
T Consensus 98 ~~~~~ 102 (119)
T PF03650_consen 98 SQKKE 102 (119)
T ss_pred hcCch
Confidence 66654
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.68 E-value=0.068 Score=32.17 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHhcCcCCcCchhHHHHH
Q 024943 25 SPVPTFRRIIRNHSTEEFSGLPYVYAL 51 (260)
Q Consensus 25 Splp~~~~I~k~kstg~~s~lp~~~~~ 51 (260)
+-+||+.+++|+||++++|...+....
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 458999999999999999876665433
No 15
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.66 E-value=1.6 Score=44.12 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhhee
Q 024943 162 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 241 (260)
Q Consensus 162 ~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~ 241 (260)
..+|.+|-++-..=| +-|-... +++..+.+|...-..++..+.+=++|++.++|...++....|.+.-+--+ +.
T Consensus 141 ~~~G~~~q~~f~~Rf---~~Qw~~s-e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~l 214 (608)
T PRK01021 141 HLIGCIGLTIFSLRF---FIQWFYL-EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RI 214 (608)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH-HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HH
Confidence 456666665544433 2332222 33334567877778899999999999999999999999999998766664 44
Q ss_pred eecCCCCCCCCCCc
Q 024943 242 NYKETSGEESRDPL 255 (260)
Q Consensus 242 ~y~~~~~~~~~~~~ 255 (260)
+++.+++++-.+|+
T Consensus 215 i~~~~~~~~~~~~k 228 (608)
T PRK01021 215 AYKEARRKPFSNTS 228 (608)
T ss_pred HHhhcccccccCCe
Confidence 55555555444444
No 16
>PHA02246 hypothetical protein
Probab=93.37 E-value=4.2 Score=34.12 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccC
Q 024943 15 GNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 68 (260)
Q Consensus 15 g~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~ 68 (260)
...-+++....-.|++..+.|.|+++++|- .|+-......+-..|- .+..|
T Consensus 9 s~~yailit~gYipgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyN--lL~T~ 59 (192)
T PHA02246 9 SILYAILITVGYIPGLVALVKAESVKGVSN-YFWYLIVATVGISFYN--LLLTD 59 (192)
T ss_pred HHHHHHHHHhhhhhhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHH--HHhcC
Confidence 344455555567899999999999999875 4566666677778888 45543
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.59 E-value=0.1 Score=31.41 Aligned_cols=28 Identities=29% Similarity=0.110 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhCCcccccchhHHHHHHH
Q 024943 178 SPLFIINLVIQTKSVEFMPFYLSLSTFL 205 (260)
Q Consensus 178 sPl~~i~~viktks~~~i~~~~~~~~~~ 205 (260)
+-+||+.+.+|+||++++|+.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4579999999999999999887765543
No 18
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=87.60 E-value=5.7 Score=33.29 Aligned_cols=65 Identities=6% Similarity=-0.024 Sum_probs=43.8
Q ss_pred chhhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHh
Q 024943 158 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQL 237 (260)
Q Consensus 158 ~~~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql 237 (260)
+.-.+.++.++++...... ..++ ++. +=+..++++.+|..|++..++++...-|......+...+
T Consensus 90 ~g~~~~l~~~as~~~t~a~----------f~~~---~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 90 QGWIELLPYAASVLGTIAL----------FMLD---GIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred hhHHHHHHHHHHHHHHHHH----------HhcC---chh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 3445777777666544332 1112 222 225679999999999999999998888888877666553
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=0.23 Score=38.89 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred CcccccchhHHHHHHHHHHHHhhhhccc--CCcceecchhhHHHHHHHHhhheeeecCCC
Q 024943 190 KSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKETS 247 (260)
Q Consensus 190 ks~~~i~~~~~~~~~~n~~lW~~YG~l~--~D~~i~~pN~~G~~l~~~ql~l~~~y~~~~ 247 (260)
|..|.+|....++.+..++.|.-|.+.+ +|+.+.-.|.+=.+-++.|+.=.+.|...+
T Consensus 44 rP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 44 RPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred CChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999887 688899999999999999999998885433
No 20
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=84.82 E-value=2.6 Score=38.15 Aligned_cols=58 Identities=16% Similarity=0.001 Sum_probs=43.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhcccC
Q 024943 158 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW 218 (260)
Q Consensus 158 ~~~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~~ 218 (260)
+......|.+..++....+ .||+.+..|+|+.+++|+...+...+....=..|..+.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3344555666666555555 799999999999999999998887777777777776654
No 21
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=84.16 E-value=0.41 Score=38.28 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=53.0
Q ss_pred hcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHHHHhhhcccCccc
Q 024943 36 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKK 99 (260)
Q Consensus 36 ~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~~~~ 99 (260)
+|..+.+|.-.-.+.++.+.+|+.|++ .+++.+..++.+|.+-...+.+++.=++.|....++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~ 101 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKK 101 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 578999999999999999999999995 455556789999999999999999888777554443
No 22
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.09 E-value=0.59 Score=36.67 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=51.3
Q ss_pred hcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHHHHhhhccc
Q 024943 36 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTE 95 (260)
Q Consensus 36 ~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~ 95 (260)
.|..+.+|...........++|..|.+ .+++.++.++.+|.+=.+.+++++.=.+.|..
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999995 55566678999999999999999988888843
No 23
>PHA02246 hypothetical protein
Probab=79.42 E-value=16 Score=30.80 Aligned_cols=63 Identities=6% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHH
Q 024943 18 FAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 82 (260)
Q Consensus 18 ~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l 82 (260)
.+....++-+||+.+-+|+|+.|+.|+.-|+.....-.+= ...+ .+++-...++.+......+
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L-~~~m-~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL-IVSM-VLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH-HHHH-hhhCCcceeeHHHHHHHHH
Confidence 3444455679999999999999999988876644433322 2221 3444434566665554444
No 24
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=72.48 E-value=7.8 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhheeeecCCCCCCCCCCc
Q 024943 197 FYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 255 (260)
Q Consensus 197 ~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~~y~~~~~~~~~~~~ 255 (260)
+.|.+...+..++=.++..+.+|..+..--..|.+.|+.--.++=.+.+++++..||+|
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~~ 93 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDDK 93 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCCC
Confidence 34444555555555566666766654444456888888888888888887777788875
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=72.00 E-value=11 Score=27.51 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHH
Q 024943 192 VEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILG 233 (260)
Q Consensus 192 ~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~ 233 (260)
.+.+|..--..++..+.+=++||+.++|...++...+|.+..
T Consensus 25 ~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 25 KSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 346677777889999999999999999998777777776643
No 26
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=69.19 E-value=86 Score=29.27 Aligned_cols=92 Identities=11% Similarity=-0.061 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHH----HHHHHHHHHHhhhhcccCCcceecchhhHH-------HH
Q 024943 164 VGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLS----LSTFLMSTSFLAYGIMNWDPFIYVPNGIGT-------IL 232 (260)
Q Consensus 164 lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~----~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~-------~l 232 (260)
+..+=...+.+=| .||...-.+.||+++-|..=. -.+..+-+.-++-..-.+||--+..|---. ++
T Consensus 267 ~syiKl~mTliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~F 343 (372)
T KOG3145|consen 267 LSYIKLAMTLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFF 343 (372)
T ss_pred HHHHHHHHHHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHH
Confidence 4444455566666 689999999999998774322 122222222223333334444444443322 23
Q ss_pred HHHHhh-heeeecCCCCCCCCCCcccc
Q 024943 233 GIVQLA-LYFNYKETSGEESRDPLIVS 258 (260)
Q Consensus 233 ~~~ql~-l~~~y~~~~~~~~~~~~~~~ 258 (260)
.++.+. -|..||+++..+.|+|-..+
T Consensus 344 diiFm~QhyVly~~~~~~~s~y~g~~~ 370 (372)
T KOG3145|consen 344 DIIFMMQHYVLYPRGHVLKSEYPGEDS 370 (372)
T ss_pred HHHHHhhheeEeccccccCCCCCCCCC
Confidence 332222 35566666655566665544
No 27
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=68.43 E-value=16 Score=30.58 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHH
Q 024943 48 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 87 (260)
Q Consensus 48 ~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~ 87 (260)
...++++.+|+.|+ ++.++ ++....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHHHH
Confidence 46899999999999 78876 466777777766666443
No 28
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=68.25 E-value=13 Score=32.75 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred HhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHHHHHHHHHhhhcccC
Q 024943 23 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 96 (260)
Q Consensus 23 ~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~ 96 (260)
-.|=++|+..-+|+|++|+.|.+.....+..|..=..|. ....+++.+...-.+...++..-..-.++|-++
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356688999999999999999999999999999999999 677667777777777788777766666666443
No 29
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=50.31 E-value=5.8 Score=28.26 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=1.5
Q ss_pred HHHHHhhheeeecCCCCCC----CCCCcc
Q 024943 232 LGIVQLALYFNYKETSGEE----SRDPLI 256 (260)
Q Consensus 232 l~~~ql~l~~~y~~~~~~~----~~~~~~ 256 (260)
+..+-++++.+|+-+|++| .+|||-
T Consensus 23 l~ailLIlf~iyR~rkkdEGSY~l~e~K~ 51 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDEGSYDLDEPKP 51 (64)
T ss_dssp --------------S------SS--S---
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCc
Confidence 4456677889999888887 456654
No 30
>COG3952 Predicted membrane protein [Function unknown]
Probab=49.71 E-value=58 Score=25.58 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=47.9
Q ss_pred HhCCcccccchhHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhheeeec
Q 024943 187 IQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYK 244 (260)
Q Consensus 187 iktks~~~i~~~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~~y~ 244 (260)
.+.++.+.+|.+.--++++.+.+=+.|.+-++|..-+..|+.|....+.-+-+...-+
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker 105 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKER 105 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4667778889888889999999999999999998877889999998887766654433
No 31
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=48.73 E-value=34 Score=24.97 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCcCCcCchhH-HHHHHHHHHHHHhhhhhhccCceEEEeehhHHHHH
Q 024943 27 VPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 82 (260)
Q Consensus 27 lp~~~~I~k~kstg~~s~lp~-~~~~~n~~lWl~YG~~~l~~~~~~vi~~N~~G~~l 82 (260)
+-|-..-.|+|. +.-|..| ...+..+.+=+.|| +..+| +..+...++|.+.
T Consensus 14 ~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 344444444443 3344444 56899999999999 67766 4445555555544
No 32
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=39.17 E-value=2.5e+02 Score=28.16 Aligned_cols=184 Identities=14% Similarity=0.028 Sum_probs=109.0
Q ss_pred HHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccC-ceEEEeehhHHHHHHHHHHHHhhhcccC
Q 024943 18 FAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD-NILVTTVNSIGAAFQLVYIILFITYTEK 96 (260)
Q Consensus 18 ~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~-~~~vi~~N~~G~~l~~~y~~v~~~y~~~ 96 (260)
-++.=|++-=.++-=+.|+||-+++|.-..+.-+++.++=..|= +.++ ++.|.++-.+|.+++++=+---++-.-+
T Consensus 328 H~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id 404 (592)
T KOG2489|consen 328 HSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKVEID 404 (592)
T ss_pred HHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEEEEe
Confidence 33444445455666688999999999999999999888888887 4443 4678889999999887543222222112
Q ss_pred cccccCcccccchhhc--ccCccccccccccchhhHHHHHHHHHHHHHH-HHHHhhhhhhccCcchhhhhhhhHHHHHHH
Q 024943 97 DKKVSYPFSHMHLVYC--SGSAICSVNQFFPLCSRQVRMLGLLLAVIGI-FSIIVAVSLQIVNPFSRQMFVGLLSCAALI 173 (260)
Q Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lG~ia~v~~i 173 (260)
++.. ...-.++++. .|+-..|-|.-|... -.|.+..++.-+++ .++ |.....+...-...++..+.+.+-.
T Consensus 405 ~~g~--i~gv~pRl~f~dkgsysE~~Tk~yD~~--A~kYLs~~L~PL~vg~aV--YSLlY~~hKsWYSWvLn~l~~~vy~ 478 (592)
T KOG2489|consen 405 WSGL--IPGVLPRLSFSDKGSYSESKTKEYDDQ--AMKYLSYLLFPLLVGGAV--YSLLYVEHKSWYSWVLNSLYNGVYA 478 (592)
T ss_pred cccc--cccccccccccccccccccchhHHHHH--HHHHHHHHHHHHHHHHHH--HhhhhcccccHHHHHHHHHHhHHHH
Confidence 1110 0000111111 233223322111110 12344333221111 122 3334455555556677666666666
Q ss_pred HHHHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Q 024943 174 SMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSF 210 (260)
Q Consensus 174 ~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW 210 (260)
+=|.--+||+---.|-||++.+|..+..--++|.+.=
T Consensus 479 FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFID 515 (592)
T KOG2489|consen 479 FGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFID 515 (592)
T ss_pred HHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 6666678999999999999999999998888887653
No 33
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=49 Score=26.58 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=51.5
Q ss_pred HHhhHHHHHHHHhCCcccccchhHHHHHHHHHHHHhhhhccc--CCcceecchhhHHHHHHHHhhheeeec
Q 024943 176 FASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYK 244 (260)
Q Consensus 176 ~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~lW~~YG~l~--~D~~i~~pN~~G~~l~~~ql~l~~~y~ 244 (260)
++-|+..+.+. +||-+-+|-.|..+.++-+.+.+-|+... +|+.++.-.+.....+.+|..-|..|.
T Consensus 36 wGlpiAal~Dm--kK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 36 WGLPIAALVDM--KKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYN 104 (132)
T ss_pred ccchHHHHHhc--cCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55566665554 47778889999999999999999999876 477777767777888888887776553
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=28.26 E-value=1.3e+02 Score=26.61 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=43.9
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHhhHHHHHHHHhCCcccccchhHHHHHHHHH
Q 024943 155 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMS 207 (260)
Q Consensus 155 ~~~~~~~~~lG~ia~v~~i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~ 207 (260)
.+++...+++|..|++.+-.|-+-.=-..++.+-+.|-++.+.-++..+++|-
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 56677789999999999988887777778999999999888877777777763
No 35
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=26.54 E-value=1.5e+02 Score=28.67 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCcCchhHHHHHHHHHHHHHhhhhhhccC-ceEEEeehhHHHHHHHHHH
Q 024943 14 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD-NILVTTVNSIGAAFQLVYI 87 (260)
Q Consensus 14 lg~i~ti~~~~Splp~~~~I~k~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~-~~~vi~~N~~G~~l~~~y~ 87 (260)
+..+-++.=|++==-++.-++++||.+++|.-..+.-+++.++=++|= +.+| .+.|.+++++|++++++=+
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WKv 376 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWKV 376 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhheee
Confidence 345556666777778899999999999998877776666666666665 3332 4789999999999988533
No 36
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=26.24 E-value=1.3e+02 Score=27.07 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=38.5
Q ss_pred hhhhhhHHHHHHHHHHHhhHHHHHHHHhCC------cccccchhHH--HH-HHHHHHHHhhhhcccCCcceecch
Q 024943 161 QMFVGLLSCAALISMFASPLFIINLVIQTK------SVEFMPFYLS--LS-TFLMSTSFLAYGIMNWDPFIYVPN 226 (260)
Q Consensus 161 ~~~lG~ia~v~~i~~~~sPl~~i~~viktk------s~~~i~~~~~--~~-~~~n~~lW~~YG~l~~D~~i~~pN 226 (260)
++++|.+.++++=++|++-+.=+.-+.++. |.+++++..+ .. .+.+.+.+.+|.+..+|.+-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 477899888888888877554444433332 3455543332 22 234445566777777666555554
No 37
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=24.20 E-value=2.1e+02 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=11.6
Q ss_pred HHHHHHHHhhheeeecCCCCCCCCCCc
Q 024943 229 GTILGIVQLALYFNYKETSGEESRDPL 255 (260)
Q Consensus 229 G~~l~~~ql~l~~~y~~~~~~~~~~~~ 255 (260)
|..+-+.=+.+|..+++++++..-||+
T Consensus 421 ~~~~~~~g~~~y~~~~~~~~~~~~~~~ 447 (473)
T TIGR00905 421 GFILYAPGIIFYGRARKERGKHVFNKK 447 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 333333444455555544433333443
No 38
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.95 E-value=3.3e+02 Score=26.56 Aligned_cols=82 Identities=16% Similarity=0.308 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhccHHHHHH-HHH--hcCcCCcCchhHHHHHHHHHHHHHhhhhhhccC----ceEEEeehhHHHHHHHH
Q 024943 13 VAGNIFAFGLFVSPVPTFRR-IIR--NHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD----NILVTTVNSIGAAFQLV 85 (260)
Q Consensus 13 ~lg~i~ti~~~~Splp~~~~-I~k--~kstg~~s~lp~~~~~~n~~lWl~YG~~~l~~~----~~~vi~~N~~G~~l~~~ 85 (260)
..|.-.+..+++.-.|+..+ +.+ -|++|=++.+|++.++.....+-.-.= ++..+ ....-.-|.++.....+
T Consensus 267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkifn~i~~~~~ai 345 (466)
T KOG2532|consen 267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIFNTIAFGGPAV 345 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHHHhHHHHHHHH
Confidence 33455555555566777654 333 577888999999998888777655551 11110 01224468888888776
Q ss_pred HHHHhhhcccC
Q 024943 86 YIILFITYTEK 96 (260)
Q Consensus 86 y~~v~~~y~~~ 96 (260)
.+++-- |.++
T Consensus 346 ~l~~l~-~~~~ 355 (466)
T KOG2532|consen 346 FLLVLA-FTSD 355 (466)
T ss_pred HHHeee-ecCC
Confidence 665544 4443
No 39
>PF15102 TMEM154: TMEM154 protein family
Probab=23.78 E-value=1e+02 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=18.2
Q ss_pred ceecchhhHHHHHHHHhhheeeecCCCCC
Q 024943 221 FIYVPNGIGTILGIVQLALYFNYKETSGE 249 (260)
Q Consensus 221 ~i~~pN~~G~~l~~~ql~l~~~y~~~~~~ 249 (260)
.|++|-+++.++-+.-+.+..+|+|++.|
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 46678677666555556666666655554
No 40
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.65 E-value=1.3e+02 Score=17.42 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.7
Q ss_pred HhccHHHHHHHHHhcC
Q 024943 23 FVSPVPTFRRIIRNHS 38 (260)
Q Consensus 23 ~~Splp~~~~I~k~ks 38 (260)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 3467899999999874
No 41
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.11 E-value=64 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024943 3 FWLLLNFFLLVAGNIFAFGLFVS 25 (260)
Q Consensus 3 ~~~~~~~i~g~lg~i~ti~~~~S 25 (260)
.|..+......++.+.....|..
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~g 24 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIG 24 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655555533
No 42
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=2.2e+02 Score=24.92 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhCCcccccch----hHHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhhe
Q 024943 178 SPLFIINLVIQTKSVEFMPF----YLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALY 240 (260)
Q Consensus 178 sPl~~i~~viktks~~~i~~----~~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~ 240 (260)
|=|||++...|++++|++.. .+.+.=++.+.-| +|-...+|.+- .+.++.|++|-.+|
T Consensus 130 aILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~~----~iai~agiVQT~ly 191 (212)
T KOG3106|consen 130 AILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFWD----PIAIVAGIVQTVLY 191 (212)
T ss_pred HHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc----chHHHHHHHHHHHH
Confidence 44899999999999999853 3334445566667 45566667332 33456677787765
No 43
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=21.08 E-value=7e+02 Score=23.42 Aligned_cols=50 Identities=6% Similarity=-0.064 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhhcccCCcceecchhhHHHHHHHHhhheeeecCCCC
Q 024943 199 LSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSG 248 (260)
Q Consensus 199 ~~~~~~~n~~lW~~YG~l~~D~~i~~pN~~G~~l~~~ql~l~~~y~~~~~ 248 (260)
|.....--++.|--+....+-...+..|..|+.++..-...+.-|++.+-
T Consensus 245 PPa~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 245 PPAVATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 33334444444544455555566778899999988766665566655543
Done!