Query 024943
Match_columns 260
No_of_seqs 200 out of 1456
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:11:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 22.2 2.2E+02 0.0076 25.1 7.3 29 162-190 351-379 (445)
2 4djk_A Probable glutamate/gamm 12.2 4.6E+02 0.016 23.5 6.9 21 162-182 368-388 (511)
3 1q1s_A Large T antigen; import 8.7 1.2E+02 0.0043 16.8 1.0 9 245-253 17-25 (26)
4 3bkd_A Transmembrane domain of 7.6 86 0.0029 17.3 -0.0 14 218-231 2-15 (26)
5 3qrx_B Melittin; calcium-bindi 7.0 2.6E+02 0.0089 15.3 1.7 15 24-38 10-24 (26)
6 2nr1_A NR1 M2, M2; receptor, s 5.1 1.6E+02 0.0053 16.5 0.1 13 205-217 9-21 (27)
7 2ljb_A M2 protein, BM2 protein 4.9 1.7E+02 0.0057 17.3 0.2 15 217-231 5-19 (35)
8 2ks1_B Epidermal growth factor 4.3 3.9E+02 0.013 16.5 1.5 13 221-233 11-23 (44)
9 2b2h_A AMT-1, ammonium transpo 4.2 6.4E+02 0.022 22.9 3.6 30 187-216 31-60 (399)
10 2klu_A T-cell surface glycopro 4.2 4.3E+02 0.015 18.1 1.8 28 215-243 2-29 (70)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=22.20 E-value=2.2e+02 Score=25.08 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHhCC
Q 024943 162 MFVGLLSCAALISMFASPLFIINLVIQTK 190 (260)
Q Consensus 162 ~~lG~ia~v~~i~~~~sPl~~i~~viktk 190 (260)
+.+..+++......|..+.....+..|++
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444444555555655555444444433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=12.16 E-value=4.6e+02 Score=23.48 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHHhhHHH
Q 024943 162 MFVGLLSCAALISMFASPLFI 182 (260)
Q Consensus 162 ~~lG~ia~v~~i~~~~sPl~~ 182 (260)
+.+..++++.....|..+...
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556655443
No 3
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=8.74 E-value=1.2e+02 Score=16.76 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 024943 245 ETSGEESRD 253 (260)
Q Consensus 245 ~~~~~~~~~ 253 (260)
++++++.+|
T Consensus 17 PKkKrk~~d 25 (26)
T 1q1s_A 17 PKKKRKVEX 25 (26)
T ss_pred CccccccCC
Confidence 344444444
No 4
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=7.56 E-value=86 Score=17.25 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.0
Q ss_pred CCcceecchhhHHH
Q 024943 218 WDPFIYVPNGIGTI 231 (260)
Q Consensus 218 ~D~~i~~pN~~G~~ 231 (260)
+|..+...|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57778888998875
No 5
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=6.96 E-value=2.6e+02 Score=15.26 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=11.8
Q ss_pred hccHHHHHHHHHhcC
Q 024943 24 VSPVPTFRRIIRNHS 38 (260)
Q Consensus 24 ~Splp~~~~I~k~ks 38 (260)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 356899999998875
No 6
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.08 E-value=1.6e+02 Score=16.54 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=9.3
Q ss_pred HHHHHHhhhhccc
Q 024943 205 LMSTSFLAYGIMN 217 (260)
Q Consensus 205 ~n~~lW~~YG~l~ 217 (260)
+.+.+|+..|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4566888888764
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=4.94 E-value=1.7e+02 Score=17.32 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.5
Q ss_pred cCCcceecchhhHHH
Q 024943 217 NWDPFIYVPNGIGTI 231 (260)
Q Consensus 217 ~~D~~i~~pN~~G~~ 231 (260)
..|..++.+|.+|++
T Consensus 5 SsDplviaA~IigiL 19 (35)
T 2ljb_A 5 SSDPLVVAASIIGIL 19 (35)
T ss_dssp -CCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 468888888999874
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.28 E-value=3.9e+02 Score=16.54 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=5.4
Q ss_pred ceecchhhHHHHH
Q 024943 221 FIYVPNGIGTILG 233 (260)
Q Consensus 221 ~i~~pN~~G~~l~ 233 (260)
.-+..-.+|.++.
T Consensus 11 ~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 11 PSIATGMVGALLL 23 (44)
T ss_dssp SSSTHHHHHHHHH
T ss_pred ceEEeehhHHHHH
Confidence 3334445553333
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=4.20 E-value=6.4e+02 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=19.7
Q ss_pred HhCCcccccchhHHHHHHHHHHHHhhhhcc
Q 024943 187 IQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 216 (260)
Q Consensus 187 iktks~~~i~~~~~~~~~~n~~lW~~YG~l 216 (260)
.|+||+-++=..-.....+.++.|..+|+-
T Consensus 31 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 60 (399)
T 2b2h_A 31 VRRKNAVNMIALSFISLIITVLLWIFYGYS 60 (399)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555445556667777888887754
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=4.17 E-value=4.3e+02 Score=18.06 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=15.7
Q ss_pred cccCCcceecchhhHHHHHHHHhhheeee
Q 024943 215 IMNWDPFIYVPNGIGTILGIVQLALYFNY 243 (260)
Q Consensus 215 ~l~~D~~i~~pN~~G~~l~~~ql~l~~~y 243 (260)
-+...++.+. -++|...++.-++-+.+|
T Consensus 2 ~l~~~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 2 PLVPRGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CSSCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 3445555554 466766666665555444
Done!