Query 024943
Match_columns 260
No_of_seqs 200 out of 1456
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 17:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024943.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024943hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 11.9 43 0.0032 22.2 1.6 17 239-255 39-55 (91)
2 d1vf5c3 f.23.23.1 (C:250-286) 10.2 1.3E+02 0.0092 16.7 2.9 17 180-196 18-34 (37)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 5.1 2.4E+02 0.018 14.4 2.5 19 76-94 8-26 (30)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 2.3E+02 0.017 15.4 1.6 15 75-89 3-17 (36)
5 d1jfia_ a.22.1.3 (A:) Negative 3.7 4.5E+02 0.032 15.4 4.0 18 179-196 4-22 (66)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.5 3.9E+02 0.028 19.6 3.6 7 78-84 45-51 (417)
7 d1q90a3 f.23.23.1 (A:248-292) 3.3 1.6E+02 0.011 17.0 0.6 16 180-195 17-32 (45)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.1 3.5E+02 0.025 13.4 1.8 9 53-61 4-12 (26)
9 d1rkla_ f.23.30.1 (A:) Oligosa 3.0 1.9E+02 0.014 15.6 0.6 19 226-244 8-26 (36)
10 d1g9pa_ g.3.6.2 (A:) Atracotox 2.7 2.3E+02 0.016 15.7 0.8 9 113-121 6-14 (45)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.88 E-value=43 Score=22.21 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=8.2
Q ss_pred heeeecCCCCCCCCCCc
Q 024943 239 LYFNYKETSGEESRDPL 255 (260)
Q Consensus 239 l~~~y~~~~~~~~~~~~ 255 (260)
..++|++++++++.+|+
T Consensus 39 ~~~ryR~~~~~~~~~~~ 55 (91)
T d1fftb2 39 FAWKYRASNKDAKYSPN 55 (91)
T ss_dssp TTTTTTTSTTTCSSCCC
T ss_pred hheeeeccCCccCCCCc
Confidence 33556555554433443
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.21 E-value=1.3e+02 Score=16.72 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCcccccc
Q 024943 180 LFIINLVIQTKSVEFMP 196 (260)
Q Consensus 180 l~~i~~viktks~~~i~ 196 (260)
+.|+--|+|+|..|.+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777788888877654
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.14 E-value=2.4e+02 Score=14.36 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHhhhcc
Q 024943 76 NSIGAAFQLVYIILFITYT 94 (260)
Q Consensus 76 N~~G~~l~~~y~~v~~~y~ 94 (260)
-.+.+++++++..+|++-.
T Consensus 8 ~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3566777788888877643
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.89 E-value=2.3e+02 Score=15.42 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=9.2
Q ss_pred ehhHHHHHHHHHHHH
Q 024943 75 VNSIGAAFQLVYIIL 89 (260)
Q Consensus 75 ~N~~G~~l~~~y~~v 89 (260)
+|..|++..+.++.+
T Consensus 3 vN~Lg~iAt~LFilv 17 (36)
T d2axtm1 3 VNQLGLIATALFVLV 17 (36)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 466777766665543
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=4.5e+02 Score=15.40 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.1
Q ss_pred hHHHHHHHHhC-Ccccccc
Q 024943 179 PLFIINLVIQT-KSVEFMP 196 (260)
Q Consensus 179 Pl~~i~~vikt-ks~~~i~ 196 (260)
|+..+++++|. .+...++
T Consensus 4 P~srVkkimk~~~~~~~is 22 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVA 22 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBC
T ss_pred ChHHHHHHHhcCCcccccc
Confidence 78889999984 3333443
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.49 E-value=3.9e+02 Score=19.62 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 024943 78 IGAAFQL 84 (260)
Q Consensus 78 ~G~~l~~ 84 (260)
+|.+.++
T Consensus 45 ~g~i~s~ 51 (417)
T d1pv7a_ 45 TGIIFAA 51 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.31 E-value=1.6e+02 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.359 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCccccc
Q 024943 180 LFIINLVIQTKSVEFM 195 (260)
Q Consensus 180 l~~i~~viktks~~~i 195 (260)
+.|+--|+|+|..|.+
T Consensus 17 laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 17 LTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666777766544
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.08 E-value=3.5e+02 Score=13.42 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=5.0
Q ss_pred HHHHHHHhh
Q 024943 53 NCLITMWYG 61 (260)
Q Consensus 53 n~~lWl~YG 61 (260)
+..+|+.++
T Consensus 4 slaiw~fw~ 12 (26)
T d1rzhh2 4 SLAIYSFWI 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445566655
No 9
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.00 E-value=1.9e+02 Score=15.56 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHhhheeeec
Q 024943 226 NGIGTILGIVQLALYFNYK 244 (260)
Q Consensus 226 N~~G~~l~~~ql~l~~~y~ 244 (260)
|.+.+.+|+..+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 8888888888888888875
No 10
>d1g9pa_ g.3.6.2 (A:) Atracotoxin-hv2a {Funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=2.69 E-value=2.3e+02 Score=15.69 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.1
Q ss_pred ccCcccccc
Q 024943 113 SGSAICSVN 121 (260)
Q Consensus 113 ~~~~~~~~~ 121 (260)
||++-||.+
T Consensus 6 fgngrcssn 14 (45)
T d1g9pa_ 6 FGNGRCSSN 14 (45)
T ss_dssp CCSSBCSSG
T ss_pred ecCCcccCC
Confidence 788888865
Done!