BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024945
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 54.7 bits (130), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 8 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 67
Query: 88 AKVAYMRLK 96
+ A + ++
Sbjct: 68 GRTALLAIQ 76
>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 54.3 bits (129), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 88 AKVAYMRLK 96
+ A + ++
Sbjct: 65 GRTALLAIQ 73
>pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHA 61
Query: 88 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 136
A+ A + PN S+ + + D++S Q++ L + +T
Sbjct: 62 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 109
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 91
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A
Sbjct: 181 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSA 219
>pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
Length = 74
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 88 AKVA 91
A+ A
Sbjct: 62 AEKA 65
>pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
Length = 73
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 88 AKVA 91
A+ A
Sbjct: 62 AEKA 65
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 84
+ ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 74
Query: 85 MSAAKVAYMRL 95
SAA+VA L
Sbjct: 75 QSAAEVALREL 85
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEM 85
S ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 61
Query: 86 SAAKVAYMRL 95
SAA+VA L
Sbjct: 62 SAAEVALREL 71
>pdb|2LJH|A Chain A, Nmr Structure Of Double-Stranded Rna-Specific Editase
Adar
Length = 114
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 33 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 91
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 42 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 95
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 30 YKNVLQELAQKEAYALPVY----NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
YK LQE+ Q E P Y K G+ FV V V G+ + ++KK+AE
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDR---IFVVEVRVNGKTIATGKGRTKKEAEK 237
Query: 86 SAAKVAYMRL 95
AA++AY +L
Sbjct: 238 EAARIAYEKL 247
>pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2
pdb|2L2K|B Chain B, Solution Nmr Structure Of The RG STEM LOOP RNA-Adar2
Dsrbm2 Complex
Length = 71
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 91
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A
Sbjct: 24 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSA 62
>pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
Protein 2
Length = 89
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 32 NVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 90
LQEL ++ + LP Y T++SG +H F T V + G G SKK A+ +AA
Sbjct: 20 GALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGT-SKKLAKRNAA-- 76
Query: 91 AYMRLKEPNPSQG 103
A M L+ PS G
Sbjct: 77 AKMLLRVSGPSSG 89
>pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For
Mirna Processing
Length = 88
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 34 LQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 92
LQEL ++ + LP Y T++SG +H F T V + G G SKK A+ +AA
Sbjct: 21 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGT-SKKLAKRNAAAKML 79
Query: 93 MRL 95
+R+
Sbjct: 80 LRV 82
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQE+ Q + P Y T ++ G H F + + G+ + A SKK+A+ AA
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 238
Query: 89 KVAYMRL 95
K+A +L
Sbjct: 239 KIALEKL 245
>pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator
Of The Interferon-Induced Protein Kinase
Length = 84
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 33 VLQELAQKEAYALPVYNTKQSG-ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 91
VL E K +PVY ++S + H PTF V VG +G+G SKK A+ AA+ A
Sbjct: 13 VLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGT-SKKLAKHRAAEAA 70
Query: 92 YMRLK--EPNPSQG 103
LK PS G
Sbjct: 71 INILKANASGPSSG 84
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK +LQE+ QK P Y G H F+ ++ G+G KSKK+AE AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 210
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK +LQE+ QK P Y G H F+ ++ G+G KSKK+AE AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 210
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK +LQE+ QK P Y G H F+ ++ G+G KSKK+AE AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 210
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK +LQE+ QK P Y G H F+ ++ G+G KSKK+AE AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 210
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK +LQE+ QK P Y G H F+ ++ G+G KSKK+AE AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 210
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 112 QAQADYSSSSLQSNVTADLHHN-IQTAG------RLVFNPNSMPKVQAEEIRELT 159
+ +D + S + + V ADL+ N +G R+V NP ++ K+ +E+REL+
Sbjct: 185 RGGSDVTGSIISAGVNADLYENWTDVSGFLXADPRIVENPKTISKISYKELRELS 239
>pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
Length = 85
Score = 31.2 bits (69), Expect = 0.57, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 45 LPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98
+P+Y T Q+ G SHA T+ V GE S +QAEM AA A + P
Sbjct: 23 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77
>pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed
With Dsrna: Molecular Basis Of Double-Stranded
Rna-Protein Interactions
pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed
With Dsrna: Molecular Basis Of Double-Stranded
Rna-Protein Interactions
Length = 69
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 34 LQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 92
LQELA ++ + LP Y Q SG H F T V V +G G SK+ A+ AA+
Sbjct: 6 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGT-SKQVAKRVAAEKLL 64
Query: 93 MRLK 96
+ K
Sbjct: 65 TKFK 68
>pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid
Perinuclear Rna-Bind Protein
Length = 97
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
QSG HAP F +V+V G + G SKK A++ A
Sbjct: 39 QSGPVHAPVFTMSVDVDGTTYEASG-PSKKTAKLHVA 74
>pdb|3P1X|A Chain A, Crystal Structure Of Drbm 2 Domain Of Interleukin
Enhancer-Binding Factor 3 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4527e
pdb|3P1X|B Chain B, Crystal Structure Of Drbm 2 Domain Of Interleukin
Enhancer-Binding Factor 3 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4527e
Length = 75
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 31 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 77
KN + EL +K L ++G SH FV VEV G+ F G G+
Sbjct: 7 KNPVXELNEKRR-GLKYELISETGGSHDKRFVXEVEVDGQKFQGAGS 52
>pdb|2L33|A Chain A, Solution Nmr Structure Of Drbm 2 Domain Of Interleukin
Enhancer- Binding Factor 3 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4527e
Length = 91
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 31 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 77
KN + EL +K L ++G SH FV VEV G+ F G G+
Sbjct: 17 KNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGS 62
>pdb|3VYY|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
pdb|3VYY|B Chain B, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
Length = 91
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 31 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAK 89
KN L K P Y + G + F+ V+V G ++G G + +KK A+ +AA+
Sbjct: 5 KNFLYAWCGKRK-MTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAAR 63
Query: 90 --VAYM-RLKEPNPSQGPAL 106
V Y+ R+ E + PA
Sbjct: 64 DFVNYLVRINEIKSEEVPAF 83
>pdb|3LLH|A Chain A, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
pdb|3LLH|B Chain B, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
Protein 2
Length = 90
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 32 NVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 90
++LQE + PVY+ K G++H P F V VG +GQG SKK A+ AA+V
Sbjct: 18 SLLQEYGTRIGKT-PVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG-PSKKAAKHKAAEV 75
Query: 91 AYMRLK 96
A LK
Sbjct: 76 ALKHLK 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,582,361
Number of Sequences: 62578
Number of extensions: 223099
Number of successful extensions: 433
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 35
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)