BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024945
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 136/277 (49%), Gaps = 58/277 (20%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK AEMSA
Sbjct: 81 VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSA 140
Query: 88 AKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPN 145
AKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V P+
Sbjct: 141 AKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVVMTPD 193
Query: 146 SMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSL 199
+ KV +E +L N + L++ P + + G++ + SSSL
Sbjct: 194 TPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSL 253
Query: 200 PLE------CTVD-PRVDPIAQSVRA-----------DG---RTCKI------------- 225
P+ T++ P + I +++ A DG +C +
Sbjct: 254 PIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLIMGTG 313
Query: 226 ---------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 253
+ RP P + P+ + +L RD++++A+
Sbjct: 314 HLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 87
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 88 AKVAYMRLKEPNP 100
AK+A L +P
Sbjct: 64 AKIAVASLTPQSP 76
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
D++ +YKN+LQE A + LPVY T +SG H+P F STVE+ G F+G AK+KK AE
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAE 142
Query: 85 MSAAKVAYMRLKEPN 99
+AA A+ LK+ N
Sbjct: 143 KNAAMAAWSSLKQSN 157
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 87
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 88 AKVAYMRLKEPNPS 101
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 SHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 73
SH L I D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+
Sbjct: 74 SHSLAARIL--DETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFT 131
Query: 74 GQGAKSKKQAEMSAAKVAYMRLKE 97
G AK+KKQAE +AA A+ LK+
Sbjct: 132 GDPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 87
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 88 AKVAYMRLKEPNPSQ 102
A+VA L PS
Sbjct: 61 AEVALNALSNRGPSH 75
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQ 142
Query: 85 MSAAKVAYMRLKE 97
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 87
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F + + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 88 AKVAYMRLKEPNPS 101
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
D++ +YKN+LQE A + LPVY + +SG H PTF TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQAE 142
Query: 85 MSAAKVAYMRLKE 97
+AA A+ L++
Sbjct: 143 KNAAIAAWFSLRK 155
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 87
+YKN LQELAQ+ ++LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 88 AKVAYMRLKEPNPSQ 102
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 142
Query: 85 MSAAKVAYMRLKE 97
+AA A+ L++
Sbjct: 143 KNAASAAWSSLRQ 155
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 76
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
D++ +YKN+LQE A + LP+Y + +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAE 142
Query: 85 MSAAKVAYMRLKE 97
+AA A+ LK+
Sbjct: 143 KNAAIAAWSSLKK 155
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 87
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 88 AKVAYMRLKEPNPSQ 102
A+V+ L PS+
Sbjct: 61 AEVSLNVLSSRVPSK 75
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
YKN+LQELAQK ++LPVY+T G P F STV F G+ A +KKQAEM+AA+
Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAAR 229
Query: 90 VAYMRLKE 97
VA+ ++
Sbjct: 230 VAFQHFED 237
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 29 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 86
+YK+ LQEL Q+ +A P Y + +G +HAP F +TV V G F A+S K+A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 87 AAKVAY 92
AAK A+
Sbjct: 61 AAKAAF 66
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 88
YK+ LQ AQK+ LP Y T + G HA F S V V G+ F S + + K+AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 89 KVAYMRLKE 97
K+A M L +
Sbjct: 147 KLALMSLPQ 155
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 213 AQSVRADGRTCKI----IRVRPNRPNMKFPEGSSVL-HRDNQWVA 252
A +V + G C + ++V P RP++ PEG++VL D+ WVA
Sbjct: 389 ASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGATVLPFSDDVWVA 433
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 20 NIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 79
NI ++ L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++
Sbjct: 109 NIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAART 167
Query: 80 KKQAEMSAAKVAYMRLK 96
KK AE+ AA+ A + ++
Sbjct: 168 KKDAEIKAARTALLAIQ 184
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 83
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 84 EMSAAKVAYMRL 95
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 20 NIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 79
NI ++ L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++
Sbjct: 109 NIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAART 167
Query: 80 KKQAEMSAAKVAYMRLK 96
KK AE+ AA+ A + ++
Sbjct: 168 KKDAEIKAARTALLAIQ 184
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 83
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 84 EMSAAKVAYMRL 95
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 20 NIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 79
NI ++ L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++
Sbjct: 111 NIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAART 169
Query: 80 KKQAEMSAAKVAYMRLK 96
KK AE+ AA+ A + ++
Sbjct: 170 KKDAEIKAARTALLAIQ 186
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 83
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 84 EMSAAKVAYMRL 95
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 5 LVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 63
V+ L S H +L F D YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 151 FVLRLLESTIHSVLEKKFISD----YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 64 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 95
+V + G+V+ K+KK+AE S AKVAY L
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 26 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 84
++ L KN+LQE AQK YA+P+Y K F TVE+GG ++G ++KK AE
Sbjct: 98 ETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 157
Query: 85 MSAAKVAYMRLK 96
+SA + A + ++
Sbjct: 158 ISAGRTALLAIQ 169
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 84
+ ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 71
Query: 85 MSAAKVAYMRL 95
SAA+VA L
Sbjct: 72 QSAAEVALREL 82
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 88
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 89 KVAYMRLKE 97
KVAY L E
Sbjct: 99 KVAYDTLLE 107
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
D V K++L E K P Y+ ++ S P +VS+V G ++G A++KK AE
Sbjct: 125 DVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP-YVSSVSFAGHTYTGGAARNKKDAEQ 183
Query: 86 SAAKVAYMRL 95
AA+ A L
Sbjct: 184 KAARAAVKSL 193
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 31 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 90
K LQE A PVY +G H+ TF +TV+VGG V + SKKQAEM+AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 91 AYMRL 95
A+ L
Sbjct: 223 AWTAL 227
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 88
+K LQEL E +P Y ++SG H TF +TV V G+ + SG+G +SKK+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEG-RSKKEAEQQAA 222
Query: 89 KVAYMRLK 96
+ A+ ++
Sbjct: 223 ESAWKAIR 230
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 88
+K LQEL + +P Y +G H F +T +GG + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 89 KVAYMRL 95
AY L
Sbjct: 230 GAAYQAL 236
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK ++QEL Q P Y K+SG H +FV+ V++ EV KSKK+AE +AA
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAA 221
Query: 89 KVAYMRL 95
A+ +L
Sbjct: 222 HFAFQKL 228
>sp|Q8EXX3|RNC_LEPIN Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rnc
PE=3 SV=1
Length = 247
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 89 KVAYMRLKEP 98
K Y R+++
Sbjct: 237 KELYNRIRKK 246
>sp|Q75FW5|RNC_LEPIC Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rnc PE=3 SV=1
Length = 247
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 89 KVAYMRLKEP 98
K Y R+++
Sbjct: 237 KELYNRIRKK 246
>sp|Q0SMF0|RNC_BORAP Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN=rnc PE=3 SV=1
Length = 245
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 3 FLLVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTF 61
FL+ +++ + + +F + D YK++LQE QK+ P Y K+ G H F
Sbjct: 147 FLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVF 206
Query: 62 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99
+ VG + S KSKK+AEM AA+VA +++ N
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDIN 244
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 90 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSS 121
A+ ++ + A + A D +S+S
Sbjct: 245 SAWRSIRAAADERAKATADA-VDADPDEASAS 275
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 88 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 119
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 101
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 102 QGPALVSPDIQAQA 115
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus
GN=Adarb1 PE=1 SV=1
Length = 711
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 88 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 119
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 101
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 102 QGPALVSPDIQAQA 115
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1
PE=1 SV=1
Length = 741
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 28 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 87
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 88 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 119
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 52 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 101
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 102 QGPALVSPDIQAQA 115
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|Q04R64|RNC_LEPBJ Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=rnc PE=3 SV=1
Length = 247
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 30 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSA 87
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 88 AKVAYMRLK 96
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 90 VAYMRLK 96
A+ ++
Sbjct: 235 SAWRAIR 241
>sp|Q660G7|RNC_BORGA Ribonuclease 3 OS=Borrelia garinii (strain PBi) GN=rnc PE=3 SV=1
Length = 245
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 21 IFFQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKS 79
+F + D YK++LQE QK+ P Y K+ G H F + VG + S KS
Sbjct: 165 MFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKS 224
Query: 80 KKQAEMSAAKVAYMRLKEPN 99
KK+AEM AA+VA +++ N
Sbjct: 225 KKEAEMRAAEVALKAMEDIN 244
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 31 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
K LQE AQ +A+P Y +SG HAP F V V G+ G K KK AE++AAK
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCK-KKYAEIAAAK 224
Query: 90 VAYMRLKEPN 99
+ ++ + N
Sbjct: 225 LMLEKVTKQN 234
>sp|O51648|RNC_BORBU Ribonuclease 3 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=rnc PE=3 SV=2
Length = 245
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 21 IFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 79
+F + D YK++LQE QK+ P Y K+ G H F + VG S KS
Sbjct: 165 MFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKS 224
Query: 80 KKQAEMSAAKVAYMRLKEPN 99
KK+AEM AA+VA ++ N
Sbjct: 225 KKEAEMRAAEVALKAMENIN 244
>sp|Q053L4|RNC_LEPBL Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=rnc PE=3 SV=1
Length = 247
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 30 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSA 87
YK LQE +QK LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 88 AKVAYMRLK 96
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>sp|Q3ZXY9|RNC_DEHSC Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3
SV=1
Length = 237
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 30 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 89 KVA 91
KVA
Sbjct: 221 KVA 223
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 16 ILLINIFFQD--DSVL-------YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 65
+ L++ +F D D V YK +LQE+A + P Y +SG H+ F +
Sbjct: 150 VTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVEL 209
Query: 66 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97
+G F+ +SKK+AE SAA+ +L+E
Sbjct: 210 MLGETAFARATGRSKKEAEQSAAQATLEKLRE 241
>sp|Q7VIA9|RNC_HELHP Ribonuclease 3 OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=rnc PE=3 SV=1
Length = 240
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 1 MNFLLVVIY-LLSYSHILL-INIFFQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESH 57
+ ++ +IY LL Y++I + ++ F D YK LQE+ Q +P Y +SG H
Sbjct: 134 LTYVQSIIYDLLEYNYIKIDLDSLFMD----YKTALQEITQAFYGEIPTYTLISESGPDH 189
Query: 58 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 95
+F + V G+ ++ SKK+A+ +A++AY +L
Sbjct: 190 KKSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQEL Q PVY ++ G H TF V + G+V +G KSKK A+ +AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAA 227
Query: 89 KVA 91
+ A
Sbjct: 228 EKA 230
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINKL 226
>sp|C4K1R3|RNC_RICPU Ribonuclease 3 OS=Rickettsia peacockii (strain Rustic) GN=rnc PE=3
SV=1
Length = 227
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 31 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
K LQE AQ + LP+Y K+ G SHA TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHASTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 90 VAYMRLK 96
RLK
Sbjct: 219 SLLHRLK 225
>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2
PE=1 SV=1
Length = 739
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 86
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 87 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 123
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 55 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL---KEPNPSQGPALVSPDI 111
E A +FV V V G F G G +SKK A AA+ A L + P + G A +P
Sbjct: 300 ERRARSFVMAVSVDGRTFEGSG-RSKKLARGQAAQAALQELFDIQMPGHAPGRARRTPMP 358
Query: 112 QAQADYSSSSLQSN---VTADL 130
Q AD S + VT DL
Sbjct: 359 QEFADSISQLVTQKFREVTTDL 380
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 89 KVAYMRLKE 97
++A +LK+
Sbjct: 226 QMALAKLKQ 234
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 89 KVAYMRLK 96
++A +LK
Sbjct: 234 QMALQKLK 241
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q1RHA2|RNC_RICBR Ribonuclease 3 OS=Rickettsia bellii (strain RML369-C) GN=rnc PE=3
SV=1
Length = 227
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 90 VAYMRLK 96
+LK
Sbjct: 219 ELLHKLK 225
>sp|A8GYE2|RNC_RICB8 Ribonuclease 3 OS=Rickettsia bellii (strain OSU 85-389) GN=rnc PE=3
SV=1
Length = 227
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 90 VAYMRLK 96
+LK
Sbjct: 219 ELLHKLK 225
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 85
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 86 SAAKVAYMRL 95
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q8DT66|RNC_STRMU Ribonuclease 3 OS=Streptococcus mutans serotype c (strain ATCC
700610 / UA159) GN=rnc PE=3 SV=1
Length = 231
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 89 KVAYMRLK 96
K A +L+
Sbjct: 221 KNALEKLQ 228
>sp|B2UTG4|RNC_HELPS Ribonuclease 3 OS=Helicobacter pylori (strain Shi470) GN=rnc PE=3
SV=1
Length = 238
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 30 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 88
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 168 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 89 KVAYMRLKE 97
A +LKE
Sbjct: 228 YQALQKLKE 236
>sp|Q92JB0|RNC_RICCN Ribonuclease 3 OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=rnc PE=3 SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 31 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 89
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HTIKEAEKNAAR 218
Query: 90 VAYMRLK 96
RLK
Sbjct: 219 SLLHRLK 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,623,332
Number of Sequences: 539616
Number of extensions: 3616397
Number of successful extensions: 8454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 8174
Number of HSP's gapped (non-prelim): 432
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)