Query 024945
Match_columns 260
No_of_seqs 153 out of 1050
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3adg_A F21M12.9 protein; HYL1, 99.9 3.3E-21 1.1E-25 142.9 10.8 70 27-96 2-72 (73)
2 3adj_A F21M12.9 protein; HYL1, 99.8 2.8E-21 9.7E-26 144.6 9.2 70 28-97 4-74 (76)
3 3llh_A RISC-loading complex su 99.8 5E-21 1.7E-25 147.9 8.9 81 16-98 2-83 (90)
4 2cpn_A TAR RNA-binding protein 99.8 1.3E-20 4.4E-25 145.8 10.8 76 23-99 11-87 (89)
5 1di2_A XLRBPA, double stranded 99.8 9E-21 3.1E-25 139.0 8.6 67 29-96 1-68 (69)
6 3adl_A RISC-loading complex su 99.8 1.6E-20 5.6E-25 145.0 10.4 74 24-98 11-85 (88)
7 1qu6_A Protein kinase PKR; dsR 99.8 7.1E-21 2.4E-25 162.4 7.8 135 25-166 10-172 (179)
8 1uhz_A Staufen (RNA binding pr 99.8 3.3E-20 1.1E-24 143.5 10.2 71 26-97 4-75 (89)
9 2khx_A Ribonuclease 3; drosha, 99.8 1.3E-20 4.4E-25 144.7 7.6 70 28-97 1-76 (85)
10 2l2n_A Hyponastic leave 1; DSR 99.8 2.4E-20 8.3E-25 147.7 9.1 84 16-99 5-89 (103)
11 1ekz_A DSRBDIII, maternal effe 99.8 8.6E-21 2.9E-25 141.7 5.9 72 24-97 3-75 (76)
12 2dix_A Interferon-inducible do 99.8 7E-20 2.4E-24 139.9 10.4 71 25-97 5-76 (84)
13 1x47_A DGCR8 protein; structur 99.8 2.1E-19 7.1E-24 141.2 11.0 82 20-103 8-90 (98)
14 1x49_A Interferon-induced, dou 99.8 1.4E-19 4.7E-24 142.1 9.2 73 26-99 12-85 (97)
15 2b7t_A Double-stranded RNA-spe 99.8 1.8E-19 6.3E-24 133.7 7.9 68 27-97 3-71 (73)
16 1whq_A RNA helicase A; double- 99.8 1.1E-19 3.9E-24 143.2 6.6 72 27-99 5-77 (99)
17 1x48_A Interferon-induced, dou 99.8 4.1E-19 1.4E-23 136.9 8.2 71 26-98 4-75 (88)
18 1t4n_A Ribonuclease III; DSRBD 99.8 1.2E-19 4E-24 142.7 4.7 70 26-96 4-74 (94)
19 2dmy_A Spermatid perinuclear R 99.8 1.2E-18 4E-23 136.6 10.2 73 23-98 11-84 (97)
20 1uil_A Double-stranded RNA-bin 99.8 6.1E-19 2.1E-23 142.0 8.5 72 27-99 25-101 (113)
21 1o0w_A Ribonuclease III, RNAse 99.8 1.7E-18 5.6E-23 154.6 11.6 97 3-99 154-251 (252)
22 2ljh_A Double-stranded RNA-spe 99.8 1.4E-18 4.7E-23 140.7 9.7 78 25-108 34-112 (114)
23 1t4o_A Ribonuclease III; RNT1P 99.8 4.5E-19 1.5E-23 144.4 6.6 73 23-96 3-76 (117)
24 2nug_A Ribonuclease III, RNAse 99.8 1.9E-18 6.5E-23 151.0 10.0 90 6-96 127-218 (221)
25 1whn_A Hypothetical protein ri 99.7 5.7E-18 1.9E-22 139.4 10.2 74 25-100 23-97 (128)
26 2l33_A Interleukin enhancer-bi 99.7 3.1E-18 1.1E-22 133.4 7.7 69 27-98 13-82 (91)
27 2yt4_A Protein DGCR8; DSRBD, R 99.7 7.5E-18 2.6E-22 149.8 10.6 144 18-166 12-198 (232)
28 3n3w_A Ribonuclease III; nucle 99.7 5E-19 1.7E-23 158.4 1.8 95 3-97 152-247 (248)
29 2a11_A Ribonuclease III, RNAse 99.7 2.2E-18 7.5E-23 152.5 2.4 97 3-99 137-233 (242)
30 2b7v_A Double-stranded RNA-spe 99.7 3.6E-17 1.2E-21 120.5 8.1 66 26-97 2-68 (71)
31 3p1x_A Interleukin enhancer-bi 99.6 8.7E-16 3E-20 114.9 8.8 68 25-98 4-72 (75)
32 1qu6_A Protein kinase PKR; dsR 99.6 2.8E-15 9.6E-20 127.7 6.9 73 26-99 102-174 (179)
33 3rv0_A K. polysporus DCR1; RNA 99.5 5E-15 1.7E-19 138.7 2.7 95 2-101 224-324 (341)
34 2l3j_A Double-stranded RNA-spe 99.5 9.4E-14 3.2E-18 123.5 9.0 67 26-98 159-226 (236)
35 2l3j_A Double-stranded RNA-spe 99.5 2.9E-13 9.8E-18 120.3 11.4 70 27-99 3-73 (236)
36 2yt4_A Protein DGCR8; DSRBD, R 99.4 2.7E-13 9.2E-18 120.5 6.2 68 27-98 129-199 (232)
37 3c4b_A Endoribonuclease dicer; 99.2 1.6E-11 5.6E-16 109.4 6.6 87 4-97 177-263 (265)
38 2kou_A Dicer-like protein 4; A 95.1 0.038 1.3E-06 43.2 5.9 70 28-99 4-82 (102)
39 3htx_A HEN1; HEN1, small RNA m 93.7 0.075 2.6E-06 55.7 5.9 71 27-101 16-99 (950)
40 2qvw_A GLP_546_48378_50642; di 90.7 0.047 1.6E-06 55.9 -0.0 67 3-98 422-498 (756)
41 2db2_A KIAA0890 protein; DSRM 87.8 0.45 1.5E-05 38.4 3.8 68 26-97 15-89 (119)
42 3adg_A F21M12.9 protein; HYL1, 81.3 0.64 2.2E-05 33.3 1.8 49 114-162 20-69 (73)
43 1x47_A DGCR8 protein; structur 78.5 0.76 2.6E-05 35.2 1.5 52 114-166 33-84 (98)
44 1uil_A Double-stranded RNA-bin 76.3 1.1 3.8E-05 35.3 1.9 52 115-166 43-99 (113)
45 2b7t_A Double-stranded RNA-spe 74.0 0.5 1.7E-05 34.0 -0.6 49 114-163 19-68 (73)
46 3p1x_A Interleukin enhancer-bi 71.4 0.98 3.4E-05 32.8 0.4 53 114-167 19-72 (75)
47 2l2n_A Hyponastic leave 1; DSR 70.9 1.8 6E-05 33.5 1.8 52 114-165 34-86 (103)
48 3adj_A F21M12.9 protein; HYL1, 70.3 1.8 6E-05 31.3 1.6 51 114-164 21-72 (76)
49 2khx_A Ribonuclease 3; drosha, 67.9 1.8 6.2E-05 32.3 1.2 52 114-165 23-75 (85)
50 1x49_A Interferon-induced, dou 63.6 3.6 0.00012 31.4 2.2 28 138-165 49-82 (97)
51 2dmy_A Spermatid perinuclear R 62.8 2.3 8E-05 32.3 1.0 50 114-164 31-81 (97)
52 1whn_A Hypothetical protein ri 62.7 3 0.0001 33.6 1.7 49 114-164 43-92 (128)
53 2dix_A Interferon-inducible do 62.2 2.5 8.7E-05 31.2 1.1 50 114-164 24-74 (84)
54 2ljh_A Double-stranded RNA-spe 61.5 2.1 7.3E-05 34.0 0.6 49 115-164 50-99 (114)
55 1whq_A RNA helicase A; double- 61.3 1.3 4.6E-05 34.0 -0.6 46 114-165 22-74 (99)
56 1ekz_A DSRBDIII, maternal effe 61.1 2.2 7.6E-05 30.7 0.6 48 115-163 24-72 (76)
57 1di2_A XLRBPA, double stranded 60.7 1.7 5.7E-05 30.7 -0.2 49 114-163 17-66 (69)
58 2b7v_A Double-stranded RNA-spe 55.1 2.7 9.4E-05 29.8 0.2 50 114-164 16-66 (71)
59 2l33_A Interleukin enhancer-bi 53.7 2.6 8.8E-05 32.1 -0.2 52 114-166 29-81 (91)
60 1t4n_A Ribonuclease III; DSRBD 51.9 3.4 0.00012 31.8 0.3 16 148-163 57-72 (94)
61 2cpn_A TAR RNA-binding protein 50.0 3.2 0.00011 31.1 -0.1 49 115-164 34-83 (89)
62 3llh_A RISC-loading complex su 49.6 2.9 0.0001 31.2 -0.4 21 146-166 62-82 (90)
63 3adl_A RISC-loading complex su 47.5 3.7 0.00013 30.8 -0.2 18 147-164 65-82 (88)
64 1uhz_A Staufen (RNA binding pr 42.8 4.8 0.00017 30.1 -0.1 18 147-164 56-73 (89)
65 1t4o_A Ribonuclease III; RNT1P 40.3 6.3 0.00022 31.6 0.1 16 148-163 59-74 (117)
66 2a11_A Ribonuclease III, RNAse 35.0 8.1 0.00028 33.3 0.0 53 113-165 178-230 (242)
67 2eki_A DRG 1, developmentally- 27.3 23 0.00078 27.3 1.4 23 222-244 8-39 (93)
68 1o0w_A Ribonuclease III, RNAse 26.0 14 0.00049 32.1 -0.0 51 114-164 196-247 (252)
69 3hvz_A Uncharacterized protein 25.7 20 0.00067 26.3 0.7 21 224-244 6-27 (78)
70 1nh8_A ATP phosphoribosyltrans 22.3 42 0.0015 30.8 2.4 17 239-255 255-272 (304)
No 1
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.85 E-value=3.3e-21 Score=142.94 Aligned_cols=70 Identities=40% Similarity=0.475 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHHhh
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLK 96 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~G-sSKKeAEq~AAk~AL~~L~ 96 (260)
..|||+.||||||++++.+|.|++..+||+|.+.|++.|.|+|..++.|.| +|||+|||.||+.||+.|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999998556999999999999999999999999 9999999999999999885
No 2
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.85 E-value=2.8e-21 Score=144.64 Aligned_cols=70 Identities=40% Similarity=0.640 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 28 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 28 ~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
.|||+.||||||++++.+|.|++ .++||+|.+.|++.|.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998 67899999999999999999999999999999999999999999864
No 3
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=147.93 Aligned_cols=81 Identities=31% Similarity=0.359 Sum_probs=59.3
Q ss_pred HhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHH
Q 024945 16 ILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR 94 (260)
Q Consensus 16 ~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~ 94 (260)
|+++++......+|||++||||||+++. .|.|++ .++||+|.+.|++.|.|+|. ++.|.|+|||+|||.||+.||+.
T Consensus 2 p~~~~~~~~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~ 79 (90)
T 3llh_A 2 PLGSHMLAANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKH 79 (90)
T ss_dssp -----------CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 5677777788899999999999999875 799998 68899999999999999998 68899999999999999999999
Q ss_pred hhCC
Q 024945 95 LKEP 98 (260)
Q Consensus 95 L~~~ 98 (260)
|...
T Consensus 80 L~~~ 83 (90)
T 3llh_A 80 LKGG 83 (90)
T ss_dssp HC--
T ss_pred HHhc
Confidence 9754
No 4
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.84 E-value=1.3e-20 Score=145.78 Aligned_cols=76 Identities=29% Similarity=0.352 Sum_probs=69.8
Q ss_pred cCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 23 FQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 23 ~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
.....+|||++||||||++++.+|.|++ .++||+|.+.|++.|.|+|. ++.|.|+|||+|||.||+.||+.|...+
T Consensus 11 ~~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s 87 (89)
T 2cpn_A 11 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS 87 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999999998 67899999999999999998 9999999999999999999999997543
No 5
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.83 E-value=9e-21 Score=138.98 Aligned_cols=67 Identities=30% Similarity=0.376 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhh
Q 024945 29 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 96 (260)
Q Consensus 29 n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~ 96 (260)
.||+.||||||++++.+|.|++ .++||+|.+.|++.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998 67899999999999999998 9999999999999999999999885
No 6
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=145.05 Aligned_cols=74 Identities=27% Similarity=0.311 Sum_probs=68.3
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 24 QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 24 ~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
.....|||++||||||++++.+|.|++ .++||+|.+.|++.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 11 ~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 11 VPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 456689999999999999999999998 67899999999999999998 999999999999999999999999753
No 7
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.83 E-value=7.1e-21 Score=162.36 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=96.2
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCC
Q 024945 25 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 103 (260)
Q Consensus 25 ~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~~~~~ 103 (260)
....|||++||||||++++. |.|++ .++||+|.+.|++.|.|+|..++.|.|+|||+|||.||+.||+.|........
T Consensus 10 ~~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~ 88 (179)
T 1qu6_A 10 LSAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVS 88 (179)
T ss_dssp SSSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCS
T ss_pred cCCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCC
Confidence 45579999999999999987 89998 57899999999999999999899999999999999999999999986543211
Q ss_pred CC--ccC-------------------CCcccCCccccccccccccccccccccccceeecCCCCC------CcchHHHhh
Q 024945 104 PA--LVS-------------------PDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM------PKVQAEEIR 156 (260)
Q Consensus 104 ~~--~l~-------------------~~~~~~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~~------~kK~aee~~ 156 (260)
.. .+. +-+.-.+.|.......+....| .+.|.+++..| +||+|++.|
T Consensus 89 p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~~Y~~~~~G~~h~~~F------~~~v~v~~~~~~~g~g~sKK~Ak~~A 162 (179)
T 1qu6_A 89 PLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGF------HYKCKMGQKEYSIGTGSTKQEAKQLA 162 (179)
T ss_dssp CSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEE------EEEEEEETTBCCEEEESSHHHHHHHH
T ss_pred CccCCCCCcccccCCCCHHHHHHHHHHhcCCcceEEecCcCCCCCCeE------EEEEEECCEEEeeEEECCHHHHHHHH
Confidence 00 000 0000013444322222222222 24445555544 399999999
Q ss_pred hhcccccccc
Q 024945 157 ELTTVNTEVA 166 (260)
Q Consensus 157 a~~~v~~~~~ 166 (260)
|..++..+..
T Consensus 163 A~~al~~L~~ 172 (179)
T 1qu6_A 163 AKLAYLQILS 172 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987766
No 8
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.82 E-value=3.3e-20 Score=143.50 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
..+|||++||||||++++.+|.|++ .++||+|.+.|++.|.|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998 67899999999999999996 88999999999999999999999964
No 9
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=144.67 Aligned_cols=70 Identities=31% Similarity=0.289 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHHc-----CCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 28 VLYKNVLQELAQKE-----AYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 28 ~n~KS~LQElcQK~-----~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
+|||++||||||++ ++.+|.|++ .++||+|.+.|++.|.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 58999999999984 577899998 67899999999999999999999999999999999999999988864
No 10
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=2.4e-20 Score=147.71 Aligned_cols=84 Identities=32% Similarity=0.328 Sum_probs=66.0
Q ss_pred HhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHH
Q 024945 16 ILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMR 94 (260)
Q Consensus 16 ~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~G-sSKKeAEq~AAk~AL~~ 94 (260)
.+++........+|||++||||||++++.+|.|++..+||+|.+.|++.|.|+|..++.|.| +|||+|||.||+.||+.
T Consensus 5 ~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~ 84 (103)
T 2l2n_A 5 TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRE 84 (103)
T ss_dssp --------------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 34455556678899999999999999999999998656999999999999999999999999 99999999999999999
Q ss_pred hhCCC
Q 024945 95 LKEPN 99 (260)
Q Consensus 95 L~~~~ 99 (260)
|....
T Consensus 85 L~~~~ 89 (103)
T 2l2n_A 85 LAKSS 89 (103)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 98543
No 11
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.82 E-value=8.6e-21 Score=141.66 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 24 QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 24 ~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
+....|||+.||||||++++. |.|++ ..+||+|.+.|++.|.|+| .++.|.|+|||+|||.||+.||+.|..
T Consensus 3 ~~~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 3 EGDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 356689999999999999998 99998 6789999999999999999 889999999999999999999998864
No 12
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.81 E-value=7e-20 Score=139.86 Aligned_cols=71 Identities=32% Similarity=0.385 Sum_probs=66.1
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 25 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 25 ~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
...+|||++||||||+++ ..|.|++ .++||+|.+.|++.|.|+| .++.|.|+|||+|||.||+.||+.|..
T Consensus 5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 456899999999999998 6899998 6789999999999999999 889999999999999999999999974
No 13
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.80 E-value=2.1e-19 Score=141.21 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=73.3
Q ss_pred ccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 20 NIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 20 ~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
+.+.....+|||++||||||++++.+|.|++ .++||+ +.|++.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 8 e~~~~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 8 EFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CSCCCTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred cceecCCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 3445567899999999999999999999998 568988 9999999999999999999999999999999999999876
Q ss_pred CCCCC
Q 024945 99 NPSQG 103 (260)
Q Consensus 99 ~~~~~ 103 (260)
..++.
T Consensus 86 ~~~~~ 90 (98)
T 1x47_A 86 FVKQT 90 (98)
T ss_dssp SSCCC
T ss_pred hhhhh
Confidence 66654
No 14
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.80 E-value=1.4e-19 Score=142.10 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
...|||++||||||++++. |.|++ .++||+|.+.|++.|.|+|..++.|.|+|||+|||.||+.||+.|....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999986 89997 6789999999999999999999999999999999999999999997543
No 15
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.79 E-value=1.8e-19 Score=133.65 Aligned_cols=68 Identities=38% Similarity=0.487 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
..|||+.||||||+ +..|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46999999999996 67899998 6789999999999999999987 889999999999999999999874
No 16
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.79 E-value=1.1e-19 Score=143.18 Aligned_cols=72 Identities=26% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECC-EEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g-~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
..|||++||||||++ +..|.|++..+||+|.+.|++.|.|+| ..++.|.|+|||+|||.||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999 889999997789999999999999999 688999999999999999999999998544
No 17
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.78 E-value=4.1e-19 Score=136.94 Aligned_cols=71 Identities=25% Similarity=0.422 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCC-cEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~-~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
...|||++||||||++++.+ .|+ ..+||+|.+ +|++.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999876 999 888999999 799999999999999999999999999999999999754
No 18
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.77 E-value=1.2e-19 Score=142.69 Aligned_cols=70 Identities=21% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCE-EeecccCCCHHHHHHHHHHHHHHHhh
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 96 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~-~~g~G~GsSKKeAEq~AAk~AL~~L~ 96 (260)
...|||+.||||+|+.+ ..|.|++..+||+|.+.|++.|.|+|. .++.|.|+|||+|||.||+.||+.|.
T Consensus 4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 4 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp SCHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 45699999999999974 689999965699999999999999999 89999999999999999999998775
No 19
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.77 E-value=1.2e-18 Score=136.60 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=66.5
Q ss_pred cCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 23 FQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 23 ~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
.....+|||+.||||||++ ..|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 11 ~~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 11 LDSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp CCCCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence 4467799999999999996 6899998 5789999999999999999998 8899999999999999999999753
No 20
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.77 E-value=6.1e-19 Score=141.96 Aligned_cols=72 Identities=25% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEE-----CCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I-----~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
..|||++||||||++++ .|.|++..+||+|.+.|++.|.| +|..++.|.|+|||+|||.||+.||+.|....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcC
Confidence 36999999999999999 99999878899999999999999 68888999999999999999999999998544
No 21
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.77 E-value=1.7e-18 Score=154.64 Aligned_cols=97 Identities=25% Similarity=0.315 Sum_probs=86.8
Q ss_pred hhhhHHHHHHhhHHhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHH
Q 024945 3 FLLVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 81 (260)
Q Consensus 3 ~~~~~~~vl~~~~~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKK 81 (260)
+-.++.+|..++.+.++++.......|||+.||||||++++..|.|++ .++||+|.+.|+|.|.|+|..++.|.|.|||
T Consensus 154 ~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK 233 (252)
T 1o0w_A 154 YEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKK 233 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHH
Confidence 456889999999999998876666789999999999999999999998 5789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 024945 82 QAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 82 eAEq~AAk~AL~~L~~~~ 99 (260)
+|||.||+.||+.|..++
T Consensus 234 ~Aeq~AA~~AL~~L~~~~ 251 (252)
T 1o0w_A 234 EAEKEAARIAYEKLLKER 251 (252)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999997553
No 22
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.4e-18 Score=140.67 Aligned_cols=78 Identities=27% Similarity=0.318 Sum_probs=69.9
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCC
Q 024945 25 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 103 (260)
Q Consensus 25 ~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~~~~~ 103 (260)
...+|||++||||||+ |.|++ .++||+|.+.|+++|.|+|..+ .|.|+|||+|||.||+.||+.|........
T Consensus 34 ~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~~~ 107 (114)
T 2ljh_A 34 PQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKDGAV 107 (114)
T ss_dssp CCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTTCCC
T ss_pred CCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4568999999999984 89998 6789999999999999999999 899999999999999999999998776666
Q ss_pred CCccC
Q 024945 104 PALVS 108 (260)
Q Consensus 104 ~~~l~ 108 (260)
+++|.
T Consensus 108 y~p~~ 112 (114)
T 2ljh_A 108 LSPLK 112 (114)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 66554
No 23
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.76 E-value=4.5e-19 Score=144.39 Aligned_cols=73 Identities=21% Similarity=0.103 Sum_probs=65.4
Q ss_pred cCCCCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCE-EeecccCCCHHHHHHHHHHHHHHHhh
Q 024945 23 FQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 96 (260)
Q Consensus 23 ~~~~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~-~~g~G~GsSKKeAEq~AAk~AL~~L~ 96 (260)
......|||+.||||||+. ..+|.|++..+||+|.+.|++.|.|+|. .++.|.|+|||+|||.||+.||..+.
T Consensus 3 ~~~~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 3 TDKLDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCCCCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCcCCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 3445689999999999995 4789999855599999999999999999 89999999999999999999998775
No 24
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.76 E-value=1.9e-18 Score=150.96 Aligned_cols=90 Identities=24% Similarity=0.199 Sum_probs=83.0
Q ss_pred hHHHHHHhhHHhhh-ccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHH
Q 024945 6 VVIYLLSYSHILLI-NIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 83 (260)
Q Consensus 6 ~~~~vl~~~~~li~-~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeA 83 (260)
++.+|..++.+.++ ++.......|||+.||||||++++..|.|++ ..+||+|.+.|+|.|.|+|. ++.|.|+|||+|
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~A 205 (221)
T 2nug_A 127 TRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEA 205 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHH
Confidence 88999999998888 7655555689999999999999999999998 67899999999999999999 999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024945 84 EMSAAKVAYMRLK 96 (260)
Q Consensus 84 Eq~AAk~AL~~L~ 96 (260)
||.||+.||+.|.
T Consensus 206 e~~AA~~AL~~L~ 218 (221)
T 2nug_A 206 EQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999986
No 25
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=5.7e-18 Score=139.42 Aligned_cols=74 Identities=31% Similarity=0.303 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHHhhCCCC
Q 024945 25 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPNP 100 (260)
Q Consensus 25 ~~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~G-sSKKeAEq~AAk~AL~~L~~~~~ 100 (260)
....|||++||||||++++.+|.|++... +|.+.|++.|.|+|..|+.|.| +|||+|||.||+.||+.|.....
T Consensus 23 ~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~~ 97 (128)
T 1whn_A 23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEG 97 (128)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSSS
T ss_pred ccCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999998655 8999999999999999999999 99999999999999999985443
No 26
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=133.43 Aligned_cols=69 Identities=33% Similarity=0.346 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
..++|+.||||||+++ .|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999988 789998 6789999999999999999987 8899999999999999999999744
No 27
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=149.79 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=100.5
Q ss_pred hhccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhh
Q 024945 18 LINIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 96 (260)
Q Consensus 18 i~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~ 96 (260)
..++......+|||+.||||||++++.+|.|++ ..+||+ +.|++.|.|+|..|+.|.|+|||+|||.||+.||..|.
T Consensus 12 ~k~~~~~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~ 89 (232)
T 2yt4_A 12 KKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILI 89 (232)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CcchhhcCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 344555667899999999999999999999998 578988 99999999999999999999999999999999999997
Q ss_pred CCCCCCCCC----------cc-----CC------------------------CcccCCccc--cc-cccccccccccccc
Q 024945 97 EPNPSQGPA----------LV-----SP------------------------DIQAQADYS--SS-SLQSNVTADLHHNI 134 (260)
Q Consensus 97 ~~~~~~~~~----------~l-----~~------------------------~~~~~p~~t--~~-~~~~~~t~~~~~~~ 134 (260)
......... .+ .. -....|.|. +. ....++...|....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v 169 (232)
T 2yt4_A 90 PDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMAC 169 (232)
T ss_dssp TTTTTC--------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHHHHHTSSSCCCEEEECC------CCEEEEEEE
T ss_pred hhccccCCccccccccchhhcccccccCCcccccccccCCCChhHHHHHHHHcCCCCCceEEEEeecCCCCCCCEEEEEE
Confidence 642211000 00 00 001236776 33 23334434343322
Q ss_pred cccceeecCCCCCCcchHHHhhhhcccccccc
Q 024945 135 QTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 166 (260)
Q Consensus 135 ~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~~ 166 (260)
. .++..|..-+||+||+.||.+++..+.+
T Consensus 170 ~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 170 G---KHTVRGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp T---TEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred E---EEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 2 3334444446999999999999987655
No 28
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.73 E-value=5e-19 Score=158.36 Aligned_cols=95 Identities=27% Similarity=0.247 Sum_probs=15.1
Q ss_pred hhhhHHHHHHhhHHhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHH
Q 024945 3 FLLVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 81 (260)
Q Consensus 3 ~~~~~~~vl~~~~~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKK 81 (260)
|-.++.+|..++.+.++++......+|||+.||||||++++.+|.|++ ..+||+|.+.|+|.|.|+|+.++.|.|.|||
T Consensus 152 ~~~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK 231 (248)
T 3n3w_A 152 FEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKK 231 (248)
T ss_dssp HHHHHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHH
Confidence 557899999999999999877677899999999999999999999998 6789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 024945 82 QAEMSAAKVAYMRLKE 97 (260)
Q Consensus 82 eAEq~AAk~AL~~L~~ 97 (260)
+|||.||+.||+.|+.
T Consensus 232 ~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 232 EAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998864
No 29
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2.2e-18 Score=152.46 Aligned_cols=97 Identities=25% Similarity=0.245 Sum_probs=17.3
Q ss_pred hhhhHHHHHHhhHHhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccCCCHHH
Q 024945 3 FLLVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ 82 (260)
Q Consensus 3 ~~~~~~~vl~~~~~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKe 82 (260)
+-.++.+|..++.+.++++.......|||+.||||||++++..|.|++..+||+|.+.|+|.|.|+|+.++.|.|.|||+
T Consensus 137 ~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~ 216 (242)
T 2a11_A 137 MEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKE 216 (242)
T ss_dssp HHHHHHHHHHHTHHHHHHTTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHH
Confidence 45688899999999998886655678999999999999999999999855999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 024945 83 AEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 83 AEq~AAk~AL~~L~~~~ 99 (260)
|||.||+.||+.|....
T Consensus 217 Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 217 AEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999997543
No 30
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.70 E-value=3.6e-17 Score=120.52 Aligned_cols=66 Identities=33% Similarity=0.389 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
..+|||+.||||| ..|.|++ ..+||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|..
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4689999999993 6799998 6789999999999999999876 789999999999999999998863
No 31
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=114.86 Aligned_cols=68 Identities=29% Similarity=0.262 Sum_probs=56.7
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 25 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 25 ~~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
...+|+.+.|+|+ . ..|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 4 ~~~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 4 KHGKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp --CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 4456665555554 3 4789998 6799999999999999999988 7899999999999999999999764
No 32
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.56 E-value=2.8e-15 Score=127.69 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=67.5
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
...|||++||||||++++.+ .|++..+||.|.+.|+++|.|+|..|+.|.|+|||+||+.||+.||..|....
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~ 174 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 174 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhccc
Confidence 45799999999999999986 99988889999999999999999988999999999999999999999997543
No 33
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.49 E-value=5e-15 Score=138.66 Aligned_cols=95 Identities=21% Similarity=0.112 Sum_probs=18.7
Q ss_pred chhhhHHHHHHhhHHhhhccccC----CCCCChHHHHHHHHHHcCCCC-CcEEE-eeeCCCCCCcEEEEEEECCEEeecc
Q 024945 2 NFLLVVIYLLSYSHILLINIFFQ----DDSVLYKNVLQELAQKEAYAL-PVYNT-KQSGESHAPTFVSTVEVGGEVFSGQ 75 (260)
Q Consensus 2 ~~~~~~~~vl~~~~~li~~~~~~----~~~~n~KS~LQElcQK~~~~l-P~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G 75 (260)
.|-.|+.||+.++.+.++++... ....|||+.||||||++++.. |.|++ ..+|| |++.|.|+|+.++.|
T Consensus 224 G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G 298 (341)
T 3rv0_A 224 EFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA 298 (341)
T ss_dssp TTHHHHHHHHHHTHHHHHCGGGC---------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE
Confidence 46689999999999999887542 456899999999999998765 59998 56675 999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCCCCC
Q 024945 76 GAKSKKQAEMSAAKVAYMRLKEPNPS 101 (260)
Q Consensus 76 ~GsSKKeAEq~AAk~AL~~L~~~~~~ 101 (260)
.|.|||+|||.||+.||+.|....+-
T Consensus 299 ~G~SKK~AEq~AA~~AL~~L~~~~k~ 324 (341)
T 3rv0_A 299 EGNSIREAEHRAAMKVLENDELLRKY 324 (341)
T ss_dssp --------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999876543
No 34
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.47 E-value=9.4e-14 Score=123.46 Aligned_cols=67 Identities=33% Similarity=0.365 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 26 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
...|||++|||| +..|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 457999999999 46799997 6789999999999999999987 7899999999999999999999743
No 35
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.46 E-value=2.9e-13 Score=120.35 Aligned_cols=70 Identities=37% Similarity=0.451 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEE-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 99 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~~ 99 (260)
..|+|+.|++|++. +..|.|++ .++||+|.+.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|....
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 36899999999976 46799998 6789999999999999999986 78999999999999999999998643
No 36
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=120.46 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHcCCCCCcEE--E-eeeCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 27 SVLYKNVLQELAQKEAYALPVYN--T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~--v-~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
..|||++||| ||++++.+|.|+ + ..+||+|.+.|++.|. ..++.|.|+|||+|||.||+.||+.|...
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 4699999999 999999999999 5 5689999999999886 44677899999999999999999999753
No 37
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.20 E-value=1.6e-11 Score=109.38 Aligned_cols=87 Identities=20% Similarity=0.102 Sum_probs=65.5
Q ss_pred hhhHHHHHHhhHHhhhccccCCCCCChHHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccCCCHHHH
Q 024945 4 LLVVIYLLSYSHILLINIFFQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 83 (260)
Q Consensus 4 ~~~~~~vl~~~~~li~~~~~~~~~~n~KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKKeA 83 (260)
-.|+.+|..++.+.++.... .+||+.||||.|.... .+.|. ..|+.|.+.|++.|.|+|..++.|.|+|||+|
T Consensus 177 ~~~~~~i~~~~~~~i~~~~~----~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~A 249 (265)
T 3c4b_A 177 EVVWQVYYPMMQPLIEKFSA----NVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKGVGRSYRIA 249 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhh----cCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEEeeCCHHHH
Confidence 56889999999988877543 2344445555444332 22332 34557999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 024945 84 EMSAAKVAYMRLKE 97 (260)
Q Consensus 84 Eq~AAk~AL~~L~~ 97 (260)
||.||+.||+.|..
T Consensus 250 eq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 250 KSAAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999863
No 38
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.12 E-value=0.038 Score=43.20 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHcC-----CCCCcEEEeeeCCCCCCcEEEEEEECCE----EeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024945 28 VLYKNVLQELAQKEA-----YALPVYNTKQSGESHAPTFVSTVEVGGE----VFSGQGAKSKKQAEMSAAKVAYMRLKEP 98 (260)
Q Consensus 28 ~n~KS~LQElcQK~~-----~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~----~~g~G~GsSKKeAEq~AAk~AL~~L~~~ 98 (260)
.+.+++|+.||++.- ...|.|.+..... ....| ++|.+-.. .+.+..-.+||.||+.||-+|+..|...
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence 467899999999963 2458898632211 12467 88887541 1223234999999999999999999865
Q ss_pred C
Q 024945 99 N 99 (260)
Q Consensus 99 ~ 99 (260)
+
T Consensus 82 G 82 (102)
T 2kou_A 82 G 82 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=93.67 E-value=0.075 Score=55.69 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEEee--eC----------CCCCC-cEEEEEEECCEEeecccCCCHHHHHHHHHHHHHH
Q 024945 27 SVLYKNVLQELAQKEAYALPVYNTKQ--SG----------ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 93 (260)
Q Consensus 27 ~~n~KS~LQElcQK~~~~lP~Y~v~~--sG----------P~H~~-~Ftv~V~I~g~~~g~G~GsSKKeAEq~AAk~AL~ 93 (260)
...||..+++ |-|- .+.|++++ ++ |...| .|.|.+.+-+...-.+..+-||+|||.||+.||+
T Consensus 16 ~~~pk~~~~q---~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~ 91 (950)
T 3htx_A 16 TPTPKAIIHQ---KFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD 91 (950)
T ss_dssp CCCCHHHHHH---TTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH---HhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence 3478887754 3332 26898731 11 12233 7999999887776678899999999999999999
Q ss_pred HhhCCCCC
Q 024945 94 RLKEPNPS 101 (260)
Q Consensus 94 ~L~~~~~~ 101 (260)
+|+.+...
T Consensus 92 ~~g~~~~~ 99 (950)
T 3htx_A 92 KLGIRPQN 99 (950)
T ss_dssp TTTSTTTS
T ss_pred HhCCCccc
Confidence 99985544
No 40
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=90.66 E-value=0.047 Score=55.91 Aligned_cols=67 Identities=9% Similarity=-0.120 Sum_probs=47.8
Q ss_pred hhhhHHHHHHhhHHhhhccccCCCCCCh-HHHHHHHHHHcCCCCCcEEEeeeCCCCCCcEEEEEEECCEEeecccCCCHH
Q 024945 3 FLLVVIYLLSYSHILLINIFFQDDSVLY-KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 81 (260)
Q Consensus 3 ~~~~~~~vl~~~~~li~~~~~~~~~~n~-KS~LQElcQK~~~~lP~Y~v~~sGP~H~~~Ftv~V~I~g~~~g~G~GsSKK 81 (260)
|-.++.+|..++.+.+++.......+|| |+.||||+|+++. +.+.+.+.+
T Consensus 422 ~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~i-----------------------------a~~v~~~~~ 472 (756)
T 2qvw_A 422 IYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAG-----------------------------AHEFRSLVD 472 (756)
T ss_dssp HHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCC-----------------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccch-----------------------------hhhhhhhhh
Confidence 4578899999999999888776777899 9999999985442 233444555
Q ss_pred HHH---------HHHHHHHHHHhhCC
Q 024945 82 QAE---------MSAAKVAYMRLKEP 98 (260)
Q Consensus 82 eAE---------q~AAk~AL~~L~~~ 98 (260)
.|| ..||+.||+.+...
T Consensus 473 ~ak~~~~~~~~~~~aa~~aL~~l~~~ 498 (756)
T 2qvw_A 473 YACEQGISVFCSSRVSTMFLERLRDI 498 (756)
T ss_dssp HTTTTTCCCBSSSHHHHHHHHHHHHS
T ss_pred HHhhhccccchhhHHHHHHHHhhccc
Confidence 555 46899999777653
No 41
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.77 E-value=0.45 Score=38.44 Aligned_cols=68 Identities=22% Similarity=0.121 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHcC-----CCCCcEEEeeeCCCCCCcEEEEEEEC--CEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024945 26 DSVLYKNVLQELAQKEA-----YALPVYNTKQSGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKE 97 (260)
Q Consensus 26 ~~~n~KS~LQElcQK~~-----~~lP~Y~v~~sGP~H~~~Ftv~V~I~--g~~~g~G~GsSKKeAEq~AAk~AL~~L~~ 97 (260)
+...||++|..-.|+-- ...-.|.. .+|. +.=.|++.+. .-.-..+.|+.|-+||..||-.|++.|+.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~---k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNGP---KKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCSS---SSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe-ecCC---ceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHH
Confidence 44579999998877632 11112222 2332 2335555553 33223568999999999999999998874
No 42
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=81.32 E-value=0.64 Score=33.33 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=32.0
Q ss_pred CCccccccccccccccccccccccceeecCCCC-CCcchHHHhhhhcccc
Q 024945 114 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVN 162 (260)
Q Consensus 114 ~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kK~aee~~a~~~v~ 162 (260)
.|.|.......++...|...+...+.++-.|.. -+||+||+.||+.++.
T Consensus 20 ~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~ 69 (73)
T 3adg_A 20 TPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 69 (73)
T ss_dssp CCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHH
Confidence 366766544444555555555555555445655 4799999999998876
No 43
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=78.50 E-value=0.76 Score=35.25 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=29.5
Q ss_pred CCccccccccccccccccccccccceeecCCCCCCcchHHHhhhhcccccccc
Q 024945 114 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 166 (260)
Q Consensus 114 ~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~~ 166 (260)
.|.|.......+. ..|...+...+.++..|.--+||+||+.||+.++..+.+
T Consensus 33 ~P~Y~~~~~~Gp~-~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 33 RPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp CCEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEEeECCC-CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 3666665432222 434333333333333333334999999999999987654
No 44
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=76.27 E-value=1.1 Score=35.27 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=30.1
Q ss_pred Cccccccccccccccccccccc-----cceeecCCCCCCcchHHHhhhhcccccccc
Q 024945 115 ADYSSSSLQSNVTADLHHNIQT-----AGRLVFNPNSMPKVQAEEIRELTTVNTEVA 166 (260)
Q Consensus 115 p~~t~~~~~~~~t~~~~~~~~~-----~~~~~~~~~~~~kK~aee~~a~~~v~~~~~ 166 (260)
|.|.+.....++...|...+.. ...++..+.--+||+||+.||+.++..+..
T Consensus 43 p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 43 GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 5555333333444444333333 133333454456999999999999987654
No 45
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=74.00 E-value=0.5 Score=33.97 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=28.2
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 163 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~ 163 (260)
.|.|.... ...++...|.......+.+. .|..-+||+||+.||+.++..
T Consensus 19 ~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~ 68 (73)
T 2b7t_A 19 GLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRS 68 (73)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHH
Confidence 45666543 23344444544333333332 343335999999999998874
No 46
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=71.41 E-value=0.98 Score=32.80 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=30.8
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhccccccccC
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAG 167 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~~~ 167 (260)
.|.|.... ...++...|.......+.++ .|..-+||+||+.||+.++..+..+
T Consensus 19 ~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 19 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp TCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 46666643 23334444433333333332 3433459999999999998876553
No 47
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=70.94 E-value=1.8 Score=33.46 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=34.2
Q ss_pred CCccccccccccccccccccccccceeecCCCC-CCcchHHHhhhhccccccc
Q 024945 114 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVNTEV 165 (260)
Q Consensus 114 ~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kK~aee~~a~~~v~~~~ 165 (260)
.|.|.......++...|...+...+.++..|.. -+||+||+.||+.++..+.
T Consensus 34 ~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~ 86 (103)
T 2l2n_A 34 TPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 86 (103)
T ss_dssp CCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 367766554444555555555555555445655 5799999999999998654
No 48
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=70.27 E-value=1.8 Score=31.32 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=30.2
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.... ...++...|...+...+.++..|..-+||+||+.||+.++..+
T Consensus 21 ~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 21 IPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 35666543 2334444454444444444444444459999999999988643
No 49
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=67.88 E-value=1.8 Score=32.26 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=27.6
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhccccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEV 165 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~ 165 (260)
.|.|.... ...+....|...+-..+.++-.|..-+||+||+.||+.++..+.
T Consensus 23 ~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 23 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 46666543 22333333432222222222223233499999999999998543
No 50
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=63.63 E-value=3.6 Score=31.41 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=20.4
Q ss_pred ceeecCCCCCC------cchHHHhhhhccccccc
Q 024945 138 GRLVFNPNSMP------KVQAEEIRELTTVNTEV 165 (260)
Q Consensus 138 ~~~~~~~~~~~------kK~aee~~a~~~v~~~~ 165 (260)
+.|.+++..+. ||+||+.||+.++..+.
T Consensus 49 v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 49 FQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp EEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 34455555443 89999999999998553
No 51
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=62.78 E-value=2.3 Score=32.34 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=29.6
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.... ...++...|...+...+.++ .|.--+||+||+.||+.++..+
T Consensus 31 ~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L 81 (97)
T 2dmy_A 31 GLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 81 (97)
T ss_dssp SCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHh
Confidence 46676643 33444444544444433332 3333459999999999998854
No 52
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=62.73 E-value=3 Score=33.62 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCccccccccccccccccccccccceeecCCCC-CCcchHHHhhhhcccccc
Q 024945 114 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.+... ++...|...+...+.++-.|.- -+||+||+.||+.++..+
T Consensus 43 ~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L 92 (128)
T 1whn_A 43 QPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQ 92 (128)
T ss_dssp CCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 356665443 3334444444444444434544 469999999999999854
No 53
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=62.17 E-value=2.5 Score=31.21 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.... ...++...|...+.... ++..+.--+||+||+.||+.++..+
T Consensus 24 ~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L 74 (84)
T 2dix_A 24 IPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINIL 74 (84)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 35665532 23333444433333333 2333444459999999999999855
No 54
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=61.53 E-value=2.1 Score=33.96 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=29.9
Q ss_pred Ccccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 115 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 115 p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
|.|.... ...+....|...+...+.++ .|..-+||+||+.||+.++..+
T Consensus 50 p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L 99 (114)
T 2ljh_A 50 LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSF 99 (114)
T ss_dssp CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHH
Confidence 6776643 23344444544444444444 4444459999999999999844
No 55
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=61.35 E-value=1.3 Score=34.01 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCccccccccccccccccccccccceeecCC-CCC------CcchHHHhhhhccccccc
Q 024945 114 QADYSSSSLQSNVTADLHHNIQTAGRLVFNP-NSM------PKVQAEEIRELTTVNTEV 165 (260)
Q Consensus 114 ~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~------~kK~aee~~a~~~v~~~~ 165 (260)
.|.|.......++...|. +.|.+++ ..+ +||+||+.||+.++..+.
T Consensus 22 ~P~Y~~~~~Gp~H~~~F~------~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (99)
T 1whq_A 22 TPAYEIRAVGNKNRQKFM------CEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLV 74 (99)
T ss_dssp CCEEEEEEEECSSSEEEE------EEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeecCCCCCeEE------EEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 367776333333444443 4445555 333 389999999999998653
No 56
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=61.12 E-value=2.2 Score=30.66 Aligned_cols=48 Identities=4% Similarity=-0.049 Sum_probs=27.0
Q ss_pred Ccccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhccccc
Q 024945 115 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 163 (260)
Q Consensus 115 p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~ 163 (260)
|.|.... ...++...|.+.....+ ++..|..-+||+||+.||+.++..
T Consensus 24 p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~ 72 (76)
T 1ekz_A 24 VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVE 72 (76)
T ss_dssp CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHH
T ss_pred CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHH
Confidence 5565432 22333344433333333 333444456999999999988763
No 57
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=60.67 E-value=1.7 Score=30.70 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=27.0
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 163 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~ 163 (260)
.|.|.... ...++...|.......+. +..|..-+||+||+.||+.++..
T Consensus 17 ~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~ 66 (69)
T 1di2_A 17 LPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTK 66 (69)
T ss_dssp CCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHH
Confidence 36776643 333444444333333232 22233334999999999988763
No 58
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=55.15 E-value=2.7 Score=29.76 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=27.0
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.... ...++...|.......+.+ +.|..-+||+||+.||+.++..+
T Consensus 16 ~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L 66 (71)
T 2b7v_A 16 GLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATV 66 (71)
T ss_dssp SCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHH
Confidence 35665532 2233334443333333332 23333359999999999988643
No 59
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=53.71 E-value=2.6 Score=32.08 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 166 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~~ 166 (260)
.|.|.... ...+....|...+...+.+. .|..-+||+||+.||+.++..+.+
T Consensus 29 ~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 29 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 56676643 33344455544444444442 443445999999999999986544
No 60
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=51.90 E-value=3.4 Score=31.82 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=13.9
Q ss_pred CcchHHHhhhhccccc
Q 024945 148 PKVQAEEIRELTTVNT 163 (260)
Q Consensus 148 ~kK~aee~~a~~~v~~ 163 (260)
+||+||+.||+.++..
T Consensus 57 SKK~AEQ~AA~~AL~~ 72 (94)
T 1t4n_A 57 NIKIAGIRAAENALRD 72 (94)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4999999999988874
No 61
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=50.05 E-value=3.2 Score=31.13 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=26.7
Q ss_pred Ccccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 115 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 115 p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
|.|.... ...++...|...+...+. +..+..-+||+||+.||+.++..+
T Consensus 34 P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L 83 (89)
T 2cpn_A 34 PEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV 83 (89)
T ss_dssp CEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHH
Confidence 6666543 233333444333333222 222333349999999999998743
No 62
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=49.59 E-value=2.9 Score=31.25 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=16.4
Q ss_pred CCCcchHHHhhhhcccccccc
Q 024945 146 SMPKVQAEEIRELTTVNTEVA 166 (260)
Q Consensus 146 ~~~kK~aee~~a~~~v~~~~~ 166 (260)
--+||+||+.||+.++..+..
T Consensus 62 G~SKK~Aeq~AA~~aL~~L~~ 82 (90)
T 3llh_A 62 GPSKKAAKHKAAEVALKHLKG 82 (90)
T ss_dssp ESSHHHHHHHHHHHHHHHHC-
T ss_pred eCCHHHHHHHHHHHHHHHHHh
Confidence 335999999999999886543
No 63
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=47.50 E-value=3.7 Score=30.78 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=15.0
Q ss_pred CCcchHHHhhhhcccccc
Q 024945 147 MPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 147 ~~kK~aee~~a~~~v~~~ 164 (260)
-+||+||+.||+.++..+
T Consensus 65 ~SKK~Aeq~AA~~AL~~L 82 (88)
T 3adl_A 65 TSKKLAKRNAAAKMLLRV 82 (88)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 349999999999998753
No 64
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=42.82 E-value=4.8 Score=30.13 Aligned_cols=18 Identities=11% Similarity=-0.165 Sum_probs=15.3
Q ss_pred CCcchHHHhhhhcccccc
Q 024945 147 MPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 147 ~~kK~aee~~a~~~v~~~ 164 (260)
-+||+||+.||+.++..+
T Consensus 56 ~SKK~Aeq~AA~~AL~~L 73 (89)
T 1uhz_A 56 PNKKIAKKNAAEAMLLQL 73 (89)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 349999999999999854
No 65
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=40.25 E-value=6.3 Score=31.62 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=14.3
Q ss_pred CcchHHHhhhhccccc
Q 024945 148 PKVQAEEIRELTTVNT 163 (260)
Q Consensus 148 ~kK~aee~~a~~~v~~ 163 (260)
.||+||+.||+.++..
T Consensus 59 SKK~AEQ~AA~~AL~~ 74 (117)
T 1t4o_A 59 NIKIAGIRAAENALRD 74 (117)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4999999999999875
No 66
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=34.99 E-value=8.1 Score=33.30 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred cCCccccccccccccccccccccccceeecCCCCCCcchHHHhhhhccccccc
Q 024945 113 AQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEV 165 (260)
Q Consensus 113 ~~p~~t~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~~ 165 (260)
..|.|.......+....+.+.+...+.++..|..-.||+||+.||+.+++.+.
T Consensus 178 ~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~ 230 (242)
T 2a11_A 178 GAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 230 (242)
T ss_dssp -----------------------------------------------------
T ss_pred CCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 34888776533333444444444433333334334599999999999998654
No 67
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=27.35 E-value=23 Score=27.28 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=16.3
Q ss_pred ccceEEEecCCCC--------ccc-CCCceee
Q 024945 222 TCKIIRVRPNRPN--------MKF-PEGSSVL 244 (260)
Q Consensus 222 ~c~~~~v~~~~~~--------~~~-p~g~tvl 244 (260)
..+.|+|||..+. +.+ |+|+||+
T Consensus 8 ~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~ 39 (93)
T 2eki_A 8 YLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVE 39 (93)
T ss_dssp SCCEEEEEECCTTSCCCSSSCEEEETTSCCHH
T ss_pred hcCeEEEEeCCCCCCCCCCCCEEEecCCCCHH
Confidence 3478999994332 677 8888875
No 68
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=26.00 E-value=14 Score=32.09 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=31.0
Q ss_pred CCcccccc-ccccccccccccccccceeecCCCCCCcchHHHhhhhcccccc
Q 024945 114 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 164 (260)
Q Consensus 114 ~p~~t~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kK~aee~~a~~~v~~~ 164 (260)
.|.|.... ...+..+.+.+.+...+.++..|..-+||+||+.||+.++..+
T Consensus 196 ~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L 247 (252)
T 1o0w_A 196 PPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247 (252)
T ss_dssp CCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 47887754 2333444454444444444434433459999999999998754
No 69
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.69 E-value=20 Score=26.35 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.4
Q ss_pred ceEEEe-cCCCCcccCCCceee
Q 024945 224 KIIRVR-PNRPNMKFPEGSSVL 244 (260)
Q Consensus 224 ~~~~v~-~~~~~~~~p~g~tvl 244 (260)
++|.|+ |.+--+.||+|+|++
T Consensus 6 ~~i~v~tP~G~~~~lp~GaT~~ 27 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPIGSTVI 27 (78)
T ss_dssp CEEEEECTTSCEEEEETTCBHH
T ss_pred ceEEEECCCCCEEEecCCCCHH
Confidence 456666 678788899999986
No 70
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=22.29 E-value=42 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCceeee-cCCcEEEEec
Q 024945 239 EGSSVLH-RDNQWVAWTD 255 (260)
Q Consensus 239 ~g~tvl~-~d~~wva~~~ 255 (260)
++-||.| .|+.||||..
T Consensus 255 ~~PTVspL~~~~wvAV~~ 272 (304)
T 1nh8_A 255 ESPTIAPLADPDWVAIRA 272 (304)
T ss_dssp SSCEEEECSSTTEEEEEE
T ss_pred CCCeeeecCCCCeEEEEE
Confidence 4779999 8888999863
Done!