Query 024946
Match_columns 260
No_of_seqs 170 out of 1524
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 3.8E-52 1.3E-56 363.9 16.5 238 21-260 38-290 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 1.3E-48 4.5E-53 333.1 16.8 221 35-260 3-231 (262)
3 1aua_A Phosphatidylinositol tr 100.0 2.6E-47 8.7E-52 330.8 16.5 220 34-260 23-263 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 4.9E-47 1.7E-51 331.7 16.4 219 35-260 33-278 (320)
5 1olm_A SEC14-like protein 2; l 100.0 2.3E-46 8E-51 337.8 16.0 218 34-260 5-243 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.4 6E-13 2.1E-17 112.1 6.2 138 110-254 4-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.1 2.5E-11 8.7E-16 103.7 4.9 131 116-253 28-162 (290)
8 2dhy_A CUE domain-containing p 93.0 0.25 8.4E-06 32.0 5.4 54 25-93 5-58 (67)
9 1wgl_A TOLL-interacting protei 92.4 0.28 9.7E-06 30.9 5.1 39 43-93 11-49 (59)
10 2dah_A Ubiquilin-3; UBA domain 88.5 1.7 5.7E-05 26.7 5.9 38 43-93 11-48 (54)
11 1wr1_B Ubiquitin-like protein 88.4 1.5 5.2E-05 27.4 5.8 27 66-92 29-55 (58)
12 2di0_A Activating signal coint 87.5 1.9 6.4E-05 28.1 5.9 45 36-92 8-52 (71)
13 2bwb_A Ubiquitin-like protein 87.4 1.4 4.8E-05 26.1 4.9 26 66-91 19-44 (46)
14 2dna_A Unnamed protein product 86.9 2.3 7.8E-05 27.4 6.0 28 66-93 31-58 (67)
15 1vej_A Riken cDNA 4931431F19; 86.6 1.9 6.6E-05 28.3 5.7 37 43-92 31-67 (74)
16 2cp8_A NEXT to BRCA1 gene 1 pr 86.4 1.6 5.6E-05 26.8 4.9 28 66-93 21-48 (54)
17 2dal_A Protein KIAA0794; FAS a 86.4 2.8 9.6E-05 26.4 6.3 40 38-90 12-51 (62)
18 2dam_A ETEA protein; KIAA0887, 85.1 2.8 9.4E-05 27.0 5.8 44 35-91 13-56 (67)
19 1ufz_A Hypothetical protein BA 84.4 3.4 0.00012 27.7 6.1 40 43-93 36-75 (83)
20 2knz_A Ubiquilin-4; cytoplasm, 84.0 2.8 9.5E-05 25.5 5.3 27 66-92 23-49 (53)
21 3e21_A HFAF1, FAS-associated f 83.4 2.6 8.8E-05 24.9 4.7 37 41-89 5-41 (45)
22 1v92_A NSFL1 cofactor P47; 3-h 82.6 2.7 9.3E-05 24.5 4.7 37 41-90 5-41 (46)
23 1otr_A Protein CUE2; protein-p 82.5 1.9 6.6E-05 25.9 3.9 39 43-93 6-44 (49)
24 1z96_A DNA-damage, UBA-domain 82.3 2.9 0.0001 23.4 4.6 23 68-90 17-39 (40)
25 1vg5_A RSGI RUH-014, rhomboid 81.6 3.5 0.00012 27.0 5.3 26 67-92 41-66 (73)
26 2jy5_A Ubiquilin-1; UBA, alter 80.6 3.8 0.00013 24.8 4.9 26 66-91 24-49 (52)
27 2cwb_A Chimera of immunoglobul 79.2 3.1 0.00011 29.5 4.7 27 66-92 78-104 (108)
28 1ify_A HHR23A, UV excision rep 76.3 7.4 0.00025 23.1 5.3 25 68-92 21-45 (49)
29 1q02_A Sequestosome 1; helical 76.0 3.3 0.00011 25.0 3.4 25 67-91 24-48 (52)
30 1veg_A NEDD8 ultimate buster-1 66.6 20 0.00068 24.0 6.1 26 68-93 42-67 (83)
31 2jp7_A MRNA export factor MEX6 64.5 22 0.00076 21.9 6.2 43 36-92 2-44 (57)
32 1oai_A Nuclear RNA export fact 60.4 27 0.00093 21.6 7.6 46 36-95 3-48 (59)
33 1p3q_Q VPS9P, vacuolar protein 59.3 6 0.00021 24.2 2.2 41 40-92 11-51 (54)
34 2dzl_A Protein FAM100B; UBA-li 58.5 11 0.00037 24.0 3.5 35 43-90 19-53 (66)
35 2dak_A Ubiquitin carboxyl-term 57.1 32 0.0011 21.4 5.7 27 68-94 22-48 (63)
36 2cp9_A EF-TS, EF-TSMT, elongat 56.7 35 0.0012 21.6 5.6 38 43-93 11-48 (64)
37 2dae_A KIAA0733 protein; mitog 55.7 20 0.00068 23.1 4.3 39 43-93 12-50 (75)
38 3p0c_A Nischarin; structural g 55.3 23 0.00078 25.6 5.3 39 38-84 91-129 (130)
39 1wji_A Tudor domain containing 53.5 21 0.00072 22.4 4.2 26 68-93 22-47 (63)
40 1wiv_A UBP14, ubiquitin-specif 52.4 36 0.0012 22.0 5.4 25 68-92 42-66 (73)
41 2g3q_A Protein YBL047C; endocy 52.0 17 0.00059 20.6 3.4 24 68-91 17-40 (43)
42 3jqo_C TRAN protein; helical o 47.8 9.3 0.00032 20.6 1.5 25 6-30 1-25 (34)
43 2qsf_X RAD23, UV excision repa 47.3 37 0.0013 26.0 5.5 43 34-91 124-166 (171)
44 3kdg_A DNA mismatch repair pro 44.8 42 0.0014 26.1 5.7 102 34-136 65-184 (197)
45 3lgb_A DNA primase large subun 42.5 1.2E+02 0.0041 23.6 7.9 44 44-93 21-64 (194)
46 3itf_A Periplasmic adaptor pro 42.4 1E+02 0.0034 22.8 7.3 63 31-99 41-103 (145)
47 2l2l_A Transcriptional repress 42.0 25 0.00087 19.9 2.8 33 37-80 2-34 (43)
48 3lay_A Zinc resistance-associa 40.0 25 0.00084 27.1 3.5 65 34-101 66-130 (175)
49 1wj7_A Hypothetical protein (R 39.4 83 0.0028 21.9 5.8 26 68-93 53-78 (104)
50 1wgn_A UBAP1, ubiquitin associ 39.1 47 0.0016 20.8 4.0 44 35-93 14-57 (63)
51 2d9s_A CBL E3 ubiquitin protei 38.8 58 0.002 19.7 4.2 28 67-94 21-48 (53)
52 2dai_A Ubadc1, ubiquitin assoc 38.8 84 0.0029 20.8 6.8 26 68-93 42-67 (83)
53 1vdl_A Ubiquitin carboxyl-term 38.6 44 0.0015 21.7 3.9 39 42-92 25-63 (80)
54 2ooa_A E3 ubiquitin-protein li 34.9 74 0.0025 19.1 4.2 27 67-93 23-49 (52)
55 2q3l_A Uncharacterized protein 33.9 92 0.0031 22.1 5.7 81 145-231 30-110 (126)
56 2dag_A Ubiquitin carboxyl-term 32.5 1E+02 0.0034 19.8 5.8 26 68-93 22-48 (74)
57 2lva_A Ubiquitin carboxyl-term 38.0 9.8 0.00033 27.4 0.0 42 40-93 17-58 (129)
58 2dkl_A Trinucleotide repeat co 30.7 1.2E+02 0.0041 20.1 7.2 26 68-93 34-59 (85)
59 1whc_A RSGI RUH-027, UBA/UBX 3 29.5 76 0.0026 19.7 4.0 27 67-93 21-48 (64)
60 3k9o_A Ubiquitin-conjugating e 28.5 90 0.0031 24.2 5.2 25 67-91 175-199 (201)
61 3bq3_A Defective in cullin ned 28.0 88 0.003 25.7 5.2 40 41-93 15-54 (270)
62 2oo3_A Protein involved in cat 26.9 30 0.001 28.8 2.1 29 204-232 235-263 (283)
63 1l6x_B Minimized B-domain of p 26.6 63 0.0022 17.5 2.6 18 33-50 15-32 (34)
64 1dv0_A DNA repair protein HHR2 25.7 64 0.0022 18.7 2.9 24 67-90 16-39 (47)
65 2cpw_A CBL-interacting protein 24.6 93 0.0032 19.3 3.7 25 68-92 32-57 (64)
66 3o39_A Periplasmic protein rel 24.5 1.2E+02 0.004 21.2 4.6 60 32-97 14-73 (108)
67 3ct6_A PTS-dependent dihydroxy 24.0 66 0.0023 23.2 3.3 42 170-224 59-100 (131)
68 1oqy_A HHR23A, UV excision rep 21.7 58 0.002 28.2 3.0 45 34-93 319-363 (368)
69 3vu7_H DNA repair protein REV1 21.6 1.3E+02 0.0046 21.5 4.5 42 45-92 42-85 (124)
70 2ekk_A UBA domain from E3 ubiq 20.8 86 0.0029 17.9 2.8 23 68-91 22-44 (47)
71 3oeo_A Spheroplast protein Y; 20.7 1.8E+02 0.0061 21.1 5.2 59 32-96 30-88 (138)
72 3e7l_A Transcriptional regulat 20.6 1.5E+02 0.0052 17.9 5.2 34 69-102 21-58 (63)
73 3ncv_A DNA mismatch repair pro 20.4 48 0.0016 26.3 2.1 102 34-136 87-207 (220)
74 4gew_A 5'-tyrosyl-DNA phosphod 20.4 1.7E+02 0.0058 24.7 5.8 26 67-92 58-83 (362)
75 1hp8_A HU-P8; leukemia, cystei 20.2 1.6E+02 0.0054 18.7 4.1 32 70-101 12-43 (68)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.8e-52 Score=363.89 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=196.5
Q ss_pred cCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCC-------CCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 21 KKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVG-------KNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 21 ~~p~~~~~~~~~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~-------~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
..|....+.+++|++|+|+.++++|++||+|++++. .++.. ...+.||.+|+|||||++||+++|.++|.+|
T Consensus 38 ~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p-~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 38 QLPRHTLQKAKDELNEREETREEAVRELQEMVQAQA-ASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCC-CccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455556678889999999999999999999998873 44311 0146799999999999999999999999999
Q ss_pred HHHhhhcC--CCCCChhhHHHHHhcCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccc
Q 024946 94 IKWRQEFR--VSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQ 171 (260)
Q Consensus 94 ~~wR~~~~--~~~i~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~ 171 (260)
++||++++ +++++++++...++.|..++.+++|++||||+++++|+++++..+.++++|++++++|.++..++.+++|
T Consensus 117 l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g 196 (316)
T 3hx3_A 117 VNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQING 196 (316)
T ss_dssp HHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHC
T ss_pred HHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcce
Confidence 99999998 5778888888888999866543389999999999999999999999999999999999998765567789
Q ss_pred eEEEEeCCCCCCCCC---CHHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccc--hhhh
Q 024946 172 ILGIIDLRGFGTENA---DLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSV--ETVR 245 (260)
Q Consensus 172 ~~~IiD~~g~~~~~~---~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~--~~ll 245 (260)
+++|+|++|++++|+ +++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||.+++. +++
T Consensus 197 ~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L- 275 (316)
T 3hx3_A 197 FCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGF- 275 (316)
T ss_dssp EEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHH-
T ss_pred EEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHH-
Confidence 999999999999874 78999999999999999999999999999999999999999999998 99999853 445
Q ss_pred hccCCCCCCCcccCC
Q 024946 246 KEYFTEATVPDNFRE 260 (260)
Q Consensus 246 ~~~i~~~~LP~~yGg 260 (260)
.++||+++||++|||
T Consensus 276 ~~~I~~~~LP~eyGG 290 (316)
T 3hx3_A 276 YQEIDENILPSDFGG 290 (316)
T ss_dssp HHHSCGGGSBGGGTS
T ss_pred HhhCCHhhCcHhhCC
Confidence 799999999999999
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.3e-48 Score=333.11 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=189.2
Q ss_pred CCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcC--CCCCChhhHHH
Q 024946 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVRG 112 (260)
Q Consensus 35 ~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~--~~~i~~~~~~~ 112 (260)
++|++ ++++|+|||+++++....+ .+...||.+|+|||||++||+++|.++|+++++||++++ .++++++++..
T Consensus 3 ~ls~~-~~~~l~~lr~~l~~~~~~~---~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~ 78 (262)
T 1r5l_A 3 HMSPL-LQPGLAALRRRAREAGVPL---APLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIG 78 (262)
T ss_dssp -------CTTHHHHHHHHHHHTCCC---SSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHH
T ss_pred CccHH-HHHHHHHHHHHHHhCCccc---CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHH
Confidence 34554 4468999999998874321 124679999999999999999999999999999999987 35677777888
Q ss_pred HHhcCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCCC---CHH
Q 024946 113 IAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA---DLK 189 (260)
Q Consensus 113 ~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~~---~~~ 189 (260)
.++.|...+.+++|++||||+++++|+++++..+.+++.|+.++++|.++..++.++.|+++|+|++|++++|+ +++
T Consensus 79 ~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~ 158 (262)
T 1r5l_A 79 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPS 158 (262)
T ss_dssp HHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHH
T ss_pred HHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHH
Confidence 88888765443389999999999999999988899999999999999987665556789999999999999886 689
Q ss_pred HHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccch--hhhhccCCCCCCCcccCC
Q 024946 190 FLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSVE--TVRKEYFTEATVPDNFRE 260 (260)
Q Consensus 190 ~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~~--~ll~~~i~~~~LP~~yGg 260 (260)
.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|++.+ +.|.++|+ ++||++|||
T Consensus 159 ~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG 231 (262)
T 1r5l_A 159 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGG 231 (262)
T ss_dssp HHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTC
T ss_pred HHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCC
Confidence 99999999999999999999999999999999999999999998 999999752 34479999 999999999
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.6e-47 Score=330.82 Aligned_cols=220 Identities=20% Similarity=0.275 Sum_probs=184.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCChhh---H
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS---V 110 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~~~---~ 110 (260)
+++.+++++++|++||+++++.. ++ ...||.+|+|||||++||+++|.++|+++++||++++++++..+. .
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~--~~----~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 96 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAG--FI----ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE 96 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTT--CC----SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhcC--CC----CCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCc
Confidence 44445566789999999998763 32 468999999999999999999999999999999999876543321 1
Q ss_pred HHHH-hcCceeeccCCCCCCCcEEEEecCccCCCC----CChhhhhHHHHHHHHHHHHhC--------CCCccceEEEEe
Q 024946 111 RGIA-ESGKAYVHDFLDINERPVLIVVASKHLPAV----HDPVEDEKLCVFFIEKALSKL--------PPGKEQILGIID 177 (260)
Q Consensus 111 ~~~l-~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~~~~~IiD 177 (260)
...+ +....+++| +|++||||+++++|+++++. .+.+++++++++.+|.+++.+ ..+++++++|+|
T Consensus 97 ~~~~~~~~~~~~~g-~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 97 KPLIAKFYPQYYHK-TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp HHHHGGGSCCEEEE-ECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred HHHHHHhCCceecc-cCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 1223 233456788 89999999999999987642 578889999999999876531 234789999999
Q ss_pred CCCCCCCCCC--HHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccc--hhhhhccCCCC
Q 024946 178 LRGFGTENAD--LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSV--ETVRKEYFTEA 252 (260)
Q Consensus 178 ~~g~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~--~~ll~~~i~~~ 252 (260)
++|++++|++ ++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|++. .+.|.++|+++
T Consensus 176 ~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~ 255 (296)
T 1aua_A 176 LKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE 255 (296)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHh
Confidence 9999999886 6889999999999999999999999999999999999999999998 99999975 24347999999
Q ss_pred CCCcccCC
Q 024946 253 TVPDNFRE 260 (260)
Q Consensus 253 ~LP~~yGg 260 (260)
+||++|||
T Consensus 256 ~LP~~yGG 263 (296)
T 1aua_A 256 NLPVKFGG 263 (296)
T ss_dssp SSBGGGTS
T ss_pred hCcHHhCC
Confidence 99999999
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4.9e-47 Score=331.71 Aligned_cols=219 Identities=21% Similarity=0.307 Sum_probs=184.7
Q ss_pred CCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCChhh-----
Q 024946 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS----- 109 (260)
Q Consensus 35 ~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~~~----- 109 (260)
+...++++++|++||+++++.. ++ .+.||.+|+|||||++||+++|.++|+++++||++++++++..+.
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~--~~----~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~ 106 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKN--YK----ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE 106 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTT--CC----SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcC--CC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence 3334466679999999998863 32 478999999999999999999999999999999999988764321
Q ss_pred -----HHHHHhcCceeeccCCCCCCCcEEEEecCccCCCC----CChhhhhHHHHHHHHHHHHh--------CCCCccce
Q 024946 110 -----VRGIAESGKAYVHDFLDINERPVLIVVASKHLPAV----HDPVEDEKLCVFFIEKALSK--------LPPGKEQI 172 (260)
Q Consensus 110 -----~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~~~ 172 (260)
.....+.+..+++| +|++||||+++++|+++++. .+.+++++++++.+|.+++. ....++++
T Consensus 107 ~~~~e~~~~~~~~~~~~~g-~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~ 185 (320)
T 3q8g_A 107 AEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETS 185 (320)
T ss_dssp HHHHHHHHHHTTSCEEEEE-ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCE
T ss_pred cchhHHHHHHHhCCceecC-CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCccee
Confidence 11223456678888 89999999999999988754 36788999999999987642 12246789
Q ss_pred EEEEeCCCCCCCCCC--HHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccch--hhhhc
Q 024946 173 LGIIDLRGFGTENAD--LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSVE--TVRKE 247 (260)
Q Consensus 173 ~~IiD~~g~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~~--~ll~~ 247 (260)
++|+|++|+++++++ ++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|++.+ +.|.+
T Consensus 186 ~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~ 265 (320)
T 3q8g_A 186 CTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLK 265 (320)
T ss_dssp EEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHh
Confidence 999999999999875 6889999999999999999999999999999999999999999998 999999753 33479
Q ss_pred cCCCCCCCcccCC
Q 024946 248 YFTEATVPDNFRE 260 (260)
Q Consensus 248 ~i~~~~LP~~yGg 260 (260)
+||+++||++|||
T Consensus 266 ~i~~~~LP~~yGG 278 (320)
T 3q8g_A 266 QIPIENLPVKYGG 278 (320)
T ss_dssp HSCGGGSBGGGTS
T ss_pred hCChhhCChhhCC
Confidence 9999999999999
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.3e-46 Score=337.77 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=187.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCh----hh
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNE----DS 109 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~----~~ 109 (260)
+++.+++++++|++||+++++..+.+| ..||.+|+|||||++||+++|.++|+++++||++++++++.. +.
T Consensus 5 ~~~l~~~q~~~l~~lr~~l~~~~~~l~-----~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 79 (403)
T 1olm_A 5 VGDLSPRQKEALAKFRENVQDVLPALP-----NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV 79 (403)
T ss_dssp TTBCCHHHHHHHHHHHHHHGGGGGGSS-----CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhccCCC-----CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHH
Confidence 455566777899999999988754454 578999999999999999999999999999999998766533 22
Q ss_pred HHHHHhcCceeeccCCCCCCCcEEEEecCccCCC----CCChhhhhHHHHHHHHHHHHhCCC-------CccceEEEEeC
Q 024946 110 VRGIAESGKAYVHDFLDINERPVLIVVASKHLPA----VHDPVEDEKLCVFFIEKALSKLPP-------GKEQILGIIDL 178 (260)
Q Consensus 110 ~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~----~~~~~~~~r~~~~~~E~~~~~~~~-------~~~~~~~IiD~ 178 (260)
+...+ ..+++| +|++||||+++++|+++++ ..+.++++|++++++|.+++.+.. +++|+++|+|+
T Consensus 80 ~~~~~---~~~~~g-~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~ 155 (403)
T 1olm_A 80 IQQYL---SGGMCG-YDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC 155 (403)
T ss_dssp HHHHC---CBEEEE-ECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHhC---Cceeec-cCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEEC
Confidence 33333 234678 7999999999999998875 478899999999999999875532 47899999999
Q ss_pred CCCCCCCCC---HHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccc--hhhhhccCCCC
Q 024946 179 RGFGTENAD---LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSV--ETVRKEYFTEA 252 (260)
Q Consensus 179 ~g~~~~~~~---~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~--~~ll~~~i~~~ 252 (260)
+|+++++++ ++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|++. .+.|.++||++
T Consensus 156 ~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~ 235 (403)
T 1olm_A 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPD 235 (403)
T ss_dssp TTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGG
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChh
Confidence 999999984 6789999999999999999999999999999999999999999998 99999975 23347999999
Q ss_pred CCCcccCC
Q 024946 253 TVPDNFRE 260 (260)
Q Consensus 253 ~LP~~yGg 260 (260)
+||++|||
T Consensus 236 ~LP~~yGG 243 (403)
T 1olm_A 236 QVPVEYGG 243 (403)
T ss_dssp GSBGGGTS
T ss_pred hCchhhCC
Confidence 99999999
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.36 E-value=6e-13 Score=112.08 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=102.1
Q ss_pred HHHHHhcCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCCC-CH
Q 024946 110 VRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-DL 188 (260)
Q Consensus 110 ~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~~-~~ 188 (260)
+...-+.+.++..| .|++||||+++.+++......+.+.+ +.|.+..+ ..+ -...+.+|+|+.|.+..+. +.
T Consensus 4 ~~~i~~~~ify~~G-~d~dGrpViv~~~~~l~~~~~D~e~L---l~~vl~tl-~~~--~~~~y~lV~d~T~~~~~n~p~~ 76 (256)
T 3pg7_A 4 FKALKTLSIFYQAG-TSKAGNPIFYYVARRFKTGQINGDLL---IYHVLLTL-KPY--YAKPYEIVVDLTHTGPSNRFKT 76 (256)
T ss_dssp TTTHHHHTSEEEEE-ECTTSCEEEEEEGGGCCBTTBCHHHH---HHHHHHHH-TTT--TTSCEEEEEECTTCCGGGCCCH
T ss_pred hhHHHHcCCEEEcC-cCCCCCEEEEEEeecCCCCCCCHHHH---HHHHHHHH-HHh--cCCCeEEEEECCCCCcccCCcH
Confidence 33334456777777 79999999999999976654444433 33333322 222 1357999999999997765 58
Q ss_pred HHHHHHHHHHhccccccccceEEEcCCcchHHHHHHh-hhcccccc-CeEEEccchhhhhccCCCCCC
Q 024946 189 KFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLT-KPLLKSYA-SLAKFCSVETVRKEYFTEATV 254 (260)
Q Consensus 189 ~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~v-kpfL~~~t-~ki~~~~~~~ll~~~i~~~~L 254 (260)
+.++.+.+++-..|...++++||+|+++++...|+.+ ++|.+.+. +|+.+++..+.|.++|+.++|
T Consensus 77 ~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 77 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGC
T ss_pred HHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHc
Confidence 8999999999999999999999999999999777665 45554455 899999765444799977665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=103.68 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=90.3
Q ss_pred cCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCCC-CHHHHHHH
Q 024946 116 SGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-DLKFLTFL 194 (260)
Q Consensus 116 ~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~~-~~~~~k~~ 194 (260)
.+.++.+++.|++|+||+++.+++.+....+.+.+ +.+.+.. +...- ...+.+|+|++|.+..+- +.+.++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~L---ly~il~t-l~~~~--~~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLL---IYHVLLT-LKPYY--AKPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHH---HHHHHHH-HTTTT--TSCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHH---HHHHHHH-HHHhc--CCCeEEEEEcCCCCccCCChHHHHHHH
Confidence 33344444489999999999999976554444333 3333332 32221 358999999999997654 68899999
Q ss_pred HHHHhccccccccceEEEcCCcchHHHH-HHhhhcccccc-CeEEEccc-hhhhhccCCCCC
Q 024946 195 FDVFYYYHPKRLGEVLFVEAPFVFKPFW-QLTKPLLKSYA-SLAKFCSV-ETVRKEYFTEAT 253 (260)
Q Consensus 195 ~~~~~~~yP~rl~~i~ivN~p~~~~~~~-~~vkpfL~~~t-~ki~~~~~-~~ll~~~i~~~~ 253 (260)
.+++...|+..++++||+|++.+|...+ ...++|.+.+. +|+.+++. .++ .+++++++
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L-~~~i~~~~ 162 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKL-AEHIEHEQ 162 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC----------
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHH-HhhCCHHH
Confidence 9999999999999999999999988755 56677777775 88888754 444 67776663
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.97 E-value=0.25 Score=32.04 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 25 RNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 25 ~~~~~~~~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
++.+|+++ ....+. ++++++|++.+ | ..|...+..-|+++++|++.|.+.|.+.
T Consensus 5 ~~~~~~~~-~~~~~~--~~~v~~L~~MF----P--------~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 5 SSGRPARQ-VRRLEF--NQAMDDFKTMF----P--------NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCCC-CCCCCS--HHHHHHHHHHC----S--------SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCcchh-ccCCCH--HHHHHHHHHHC----C--------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34455542 333332 24788898886 2 4578899999999999999999998765
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=92.40 E-value=0.28 Score=30.89 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.+++|++.+ | ..|...+-.-|+++++|++.|...|.+.
T Consensus 11 e~l~~L~emF----P--------~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMF----P--------NMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHC----S--------SSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHC----C--------CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5678888876 2 4588999999999999999999998753
No 10
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.48 E-value=1.7 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.|++|+++ .+.++..-++-|+++++|+++|.+.|...
T Consensus 11 ~~l~~L~~M-------------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM-------------GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH-------------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-------------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 457777765 14466677999999999999999988754
No 11
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.38 E-value=1.5 Score=27.39 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.++...++-|++.++|+++|.+.|..
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456778899999999999999998864
No 12
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=87.54 E-value=1.9 Score=28.10 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 36 SDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 36 ~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
.+..+.+..|.++++.+ | ...+.++.+.|..++.|+|.+...|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf----P--------dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL----P--------DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC----C--------SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc----c--------cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 34566777889998876 2 457999999999999999999998865
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=87.37 E-value=1.4 Score=26.09 Aligned_cols=26 Identities=23% Similarity=0.040 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
+.++...++-|+++++|+++|.+.|-
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45677789999999999999998774
No 14
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.90 E-value=2.3 Score=27.39 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.++..-++-|++.+.|+++|++.|...
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5577788999999999999999988654
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.57 E-value=1.9 Score=28.34 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.|++|+++ .+.++...++-|++.++|+++|++.|..
T Consensus 31 ~qi~qL~eM-------------GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL-------------GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH-------------TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-------------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 467777775 1456778899999999999999988754
No 16
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.38 E-value=1.6 Score=26.77 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.|...=.+-|+.+++|+++|...|...
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6688889999999999999999888653
No 17
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.36 E-value=2.8 Score=26.44 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 024946 38 PHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKL 90 (260)
Q Consensus 38 ~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l 90 (260)
++.+++.|++|...- ..+......||.+++||++.|...+
T Consensus 12 s~~~~e~i~qF~~iT-------------g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTIT-------------GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHT-------------CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHh-------------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445556788887643 1257788999999999999998765
No 18
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.10 E-value=2.8 Score=26.96 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 35 ~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
.++++ +.++|++|...-. ..+......||..++||++.|+..+-
T Consensus 13 ~Ls~~-~~e~i~qF~~ITg------------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQE-QTEKLLQFQDLTG------------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHH-HHHHHHHHHHHHC------------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChh-HHHHHHHHHHHhC------------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555 4568888888652 12567889999999999999987764
No 19
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=84.44 E-value=3.4 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
.+++++|..+... ..+..|.+-...++||+++|...+.+-
T Consensus 36 SCLd~iR~VlGds-----------V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGDA-----------VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTTT-----------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-----------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4788888887642 358899999999999999999988654
No 20
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=84.03 E-value=2.8 Score=25.53 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.++....+-|+++++|+++|.+.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 447888899999999999999998864
No 21
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=83.42 E-value=2.6 Score=24.85 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 024946 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAK 89 (260)
Q Consensus 41 ~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~ 89 (260)
+++.|.+|.+.-. ..+-.....||.+++||++.|...
T Consensus 5 ~de~ia~F~~iTG------------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG------------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC------------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC------------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4567888888532 123377888999999999999753
No 22
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=82.60 E-value=2.7 Score=24.46 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 024946 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKL 90 (260)
Q Consensus 41 ~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l 90 (260)
+++.|.+|...- ..+......||.+++||++.|...+
T Consensus 5 ~~~~i~~F~~iT-------------g~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT-------------GAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT-------------CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh-------------CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345777777642 1257889999999999999998765
No 23
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=82.50 E-value=1.9 Score=25.91 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
..++.|.+.+ | ..+...+-+-|+++++|+++|...|.+.
T Consensus 6 ~~v~~L~EMF----P--------~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMF----P--------AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHC----S--------SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHC----C--------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567777765 2 3467888999999999999999998764
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=82.30 E-value=2.9 Score=23.42 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=19.4
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKL 90 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l 90 (260)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667899999999999998765
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.55 E-value=3.5 Score=27.02 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
.+.....+-|+++++|+++|.+.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 36778899999999999999987754
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=80.62 E-value=3.8 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
+.++....+-|+++++|+++|.+.|.
T Consensus 24 F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 24 FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44788889999999999999998774
No 27
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=79.20 E-value=3.1 Score=29.47 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 66 ~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
..++...++-|++.++|+++|++.|..
T Consensus 78 F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 78 IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457788999999999999999998864
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.33 E-value=7.4 Score=23.11 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.9
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.....+-|+++++|+++|.+.|..
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 6788999999999999999987754
No 29
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=75.95 E-value=3.3 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
.+..||-|.|.+.++|+.+|.+.|.
T Consensus 24 negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 24 DEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccccHHHHHHHHccCCHHHHHHHhh
Confidence 4568999999999999999998874
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.61 E-value=20 Score=23.99 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.....+-|+++++|+++|.+.|-.+
T Consensus 42 ~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 42 DTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67889999999999999999988765
No 31
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=64.51 E-value=22 Score=21.87 Aligned_cols=43 Identities=7% Similarity=0.197 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 36 SDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 36 ~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
++++ +++.|.+|.+.- ..+-.|-.++|..++||.++|...+.+
T Consensus 2 l~~~-q~~mv~~~s~~T-------------~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 2 LNPV-QLELLNKLHLET-------------KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCHH-HHHHHHHHHHHH-------------CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHH-------------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4553 335666665532 346789999999999999999999887
No 32
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=60.44 E-value=27 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 024946 36 SDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIK 95 (260)
Q Consensus 36 ~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~ 95 (260)
+++ ++++.|.+|.+.- ..+-.|-.++|..++||.++|.+.+.+...
T Consensus 3 ls~-~q~~mv~~~s~~T-------------gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 3 LSP-EQQEMLQAFSTQS-------------GMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp CCH-HHHHHHHHHHHHH-------------CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHH-------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455 4555666666632 346899999999999999999998877543
No 33
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=59.30 E-value=6 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 40 ESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 40 ~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.++.+++|++.+ | ..|...+-.-|++++++++.|...+..
T Consensus 11 e~~~~~~~L~~MF----P--------~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMF----P--------DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHS----T--------TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHc----c--------cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3445677777765 2 458889999999999999988877654
No 34
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.48 E-value=11 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKL 90 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l 90 (260)
+.|.+|...- ..++.....||.+++||++.|...+
T Consensus 19 ~~i~qF~~iT-------------g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAA-------------GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHH-------------CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-------------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5778877653 1267778999999999999998766
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.06 E-value=32 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.7
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKAI 94 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~~ 94 (260)
+.....+-|+++++|+++|.+.|..+.
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 467788999999999999998887763
No 36
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=56.67 E-value=35 Score=21.57 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.|.+||+.-.. .-.-.-.-|..+++|+++|...|++-
T Consensus 11 ~~Vk~LRe~TGa-------------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGY-------------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCC-------------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 468899987531 23347788999999999999999875
No 37
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.74 E-value=20 Score=23.15 Aligned_cols=39 Identities=10% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 43 ~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.+.+||+.+ |.+| |...-.+++.++.|.+.+.+.|.+-
T Consensus 12 qvfheLkQrF----PEvP--------d~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 12 QVLHDLRQKF----PEVP--------EVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHS----SSSC--------HHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHhc----ccCc--------HHHHHHHHHHhccCHHHHHHHHHHh
Confidence 4678888876 4555 7889999999999999999988653
No 38
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=55.34 E-value=23 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHH
Q 024946 38 PHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIE 84 (260)
Q Consensus 38 ~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~ 84 (260)
-|+|..+++.+-+.+... +.+ ..+..+..||...+||+.
T Consensus 91 ie~Rr~~Le~yL~~l~~~-p~l-------~~s~~l~~FL~~~~~~~~ 129 (130)
T 3p0c_A 91 VEKREKDLEVYLQKLLAA-FPG-------VTPRVLAHFLHFHFYEIN 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHT-SCS-------EECHHHHHHHHSCTTC--
T ss_pred HHHHHHHHHHHHHHHHcC-hhh-------hcCHHHHHHhCCCccccc
Confidence 567777888887777654 322 356789999999999874
No 39
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.54 E-value=21 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.9
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.....+-|+++++|+++|.+.|...
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 56667889999999999999888665
No 40
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.42 E-value=36 Score=21.95 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
+.....+-|+++++|+++|.+-|..
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5677889999999999999987754
No 41
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=52.03 E-value=17 Score=20.60 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.3
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
+.....+-|+++++|+++|.+-|.
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHH
Confidence 566788899999999999988764
No 42
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=47.76 E-value=9.3 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=18.9
Q ss_pred cccccCCCccccccccCCCCCccCC
Q 024946 6 CQNFASPFVSSIKLTKKPIRNFKAP 30 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~ 30 (260)
|+|-++|+++++---..|++.+.|+
T Consensus 1 Cas~~kp~pepd~~n~VpvNKTiP~ 25 (34)
T 3jqo_C 1 CSSGHKPPPEPDWSNTVPVNKTIPV 25 (34)
T ss_dssp --CCCCCCCCCCCSSEEESCSSCCC
T ss_pred CCCCCCCCCCCccccccccccccCH
Confidence 8899998888877677888888766
No 43
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=47.34 E-value=37 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
...||+++ ++|+.|.++ -.+....++-|.+|++|.+.|...|-
T Consensus 124 i~~tpee~-eaI~rL~~m--------------GF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 124 VDYTPEDD-QAISRLCEL--------------GFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCHHHH-HHHHHHHTT--------------TCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccHH-HHHHHHHHc--------------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788776 467665542 23677888999999999999988764
No 44
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=44.76 E-value=42 Score=26.07 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCC-CC--------C---CCCCHHH----HHHHHHhc-CCCHHHHHHHHHHHHHH
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPV-GK--------N---GRDDEDM----ILWFLKDR-KFSIEESLAKLTKAIKW 96 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~-~~--------~---~~~~d~~----llRfLra~-~~dv~~A~~~l~~~~~w 96 (260)
+.+++.+. ..+++.++.+++-+-.+-. |. | ...+..- ++..|... .-+.++..+.+....+.
T Consensus 65 l~ls~~e~-~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~AC 143 (197)
T 3kdg_A 65 FHYSTNEA-LIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSC 143 (197)
T ss_dssp EECCTTHH-HHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EecCHHHH-HHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 45566554 4778888888876654421 11 1 1122222 33344333 33555655666666666
Q ss_pred hhhcCC-CCCChhhHHHHHhcCceeeccCCCCCCCcEEEEe
Q 024946 97 RQEFRV-SELNEDSVRGIAESGKAYVHDFLDINERPVLIVV 136 (260)
Q Consensus 97 R~~~~~-~~i~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~ 136 (260)
|..... +.++.+++...++.-...-.++...+|||+++--
T Consensus 144 r~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l 184 (197)
T 3kdg_A 144 KGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH 184 (197)
T ss_dssp CC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE
T ss_pred HhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEe
Confidence 766665 5677777766554322333445688999998764
No 45
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=42.53 E-value=1.2e+02 Score=23.64 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 44 LVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 44 ~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
++..|.+.+.+.. +|+ ......+--||.+-+.++++|.+-++..
T Consensus 21 CM~~l~~~Lr~~~-hL~-----h~gR~ql~lFLkgiGls~ee~l~f~r~~ 64 (194)
T 3lgb_A 21 CIKNLMEGLKKNH-HLR-----YYGRQQLSLFLKGIGLSADEALKFWSEA 64 (194)
T ss_dssp HHHHHHHHHHHHS-CCC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCC-----chhHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6667777776553 564 5567888999999999999999987753
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=42.39 E-value=1e+02 Score=22.78 Aligned_cols=63 Identities=6% Similarity=0.100 Sum_probs=41.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 024946 31 VKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQE 99 (260)
Q Consensus 31 ~~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~ 99 (260)
...+++|++.+ +.|.+|++......... ......-+...+.+-+||-.++...+.+..+-+.+
T Consensus 41 ~~~L~LTdeQk-qqir~L~~~~r~~~~~~-----~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 41 FDGISLTEHQR-QQMRDLMQQARHEQPPV-----NVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp TTTCCCCHHHH-HHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHH-HHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 36799997655 57788887766543221 12233456677789999988888887776655443
No 47
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=41.99 E-value=25 Score=19.87 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcC
Q 024946 37 DPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRK 80 (260)
Q Consensus 37 ~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~ 80 (260)
+|++++..|.+||+-+.... ....|++=||...
T Consensus 2 s~~ere~~i~~LreeLR~EE-----------aKLvLLKKlrqSQ 34 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEE-----------AKLVLLKKLRQSQ 34 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 58899999999999987642 2455666666554
No 48
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.04 E-value=25 Score=27.09 Aligned_cols=65 Identities=6% Similarity=-0.076 Sum_probs=41.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcC
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR 101 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~ 101 (260)
+++|+|.+ ++++++++....+...+-. .-.....-|..-+.+.++|.+++.+...+..+.|.+..
T Consensus 66 LnLT~EQq-~ql~~I~~e~r~~~~~Lr~--ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 66 SPLTTEQQ-ATAQKIYDDYYTQTSALRQ--QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp --CCHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78998766 4677777766543211100 00112344666777889999999999999999987643
No 49
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.35 E-value=83 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+..-...-|..++||+++|...|..-
T Consensus 53 seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 53 NQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56667778888888888888777643
No 50
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.14 E-value=47 Score=20.78 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 35 ~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
.++|.++ ++|+.|-.. -.++....+-|++++.|+|+|++-|-.+
T Consensus 14 ~ls~se~-e~V~~LvsM--------------GFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 14 MLSPSER-QCVETVVNM--------------GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp TCCHHHH-HHHHHHHHH--------------HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhCcchH-HHHHHHHHc--------------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456554 467776643 2367789999999999999999876543
No 51
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.84 E-value=58 Score=19.66 Aligned_cols=28 Identities=18% Similarity=-0.129 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLTKAI 94 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~~~~ 94 (260)
.+..-..|-|...++|++.|...|+++.
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4677899999999999999999998763
No 52
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.76 E-value=84 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.....+-|+++++|++.|.+-|-.+
T Consensus 42 ~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 42 PENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 56778899999999999999888765
No 53
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.63 E-value=44 Score=21.71 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 42 RKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 42 ~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
...+.+||+.- ...|-.+|.--|.+.+.|+..|+..|..
T Consensus 25 q~lLnQLrEIT------------GiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREIT------------GINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHS------------CCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHh------------CCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 34788888853 2457889999999999999999988754
No 54
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.95 E-value=74 Score=19.10 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
.|..-.++-|+..++|++-|...|.++
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 467889999999999999999998876
No 55
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=33.87 E-value=92 Score=22.06 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=51.8
Q ss_pred CChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCCCCHHHHHHHHHHHhccccccccceEEEcCCcchHHHHHH
Q 024946 145 HDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 224 (260)
Q Consensus 145 ~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~ 224 (260)
.+.+|+.. +.=.+|..+... +...+.+++|++. +...++..+-.-++.-..|. ..+.++=||-.+.|...+-++
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~--~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGI--KTPEIVALIDITE--LDGLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTC--CSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhC--CCceEEEEEEecC--CCCCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHHHHHH
Confidence 45677766 555666655431 2223777777653 23334444444333323443 788999999999999999999
Q ss_pred hhhcccc
Q 024946 225 TKPLLKS 231 (260)
Q Consensus 225 vkpfL~~ 231 (260)
..+|++.
T Consensus 104 ~~~~~~~ 110 (126)
T 2q3l_A 104 ANWFTPG 110 (126)
T ss_dssp HHHHCSS
T ss_pred HhhccCC
Confidence 9999765
No 56
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.52 E-value=1e+02 Score=19.84 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKF-SIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~-dv~~A~~~l~~~ 93 (260)
+.....+-|++++. |++.|.+-|..+
T Consensus 22 ~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 22 PMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 46778899999985 899999888765
No 57
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=38.05 E-value=9.8 Score=27.40 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 40 ESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 40 ~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
.....|.|||+.-.. .|-.+|..-|.|+++|+.+|+.+|..-
T Consensus 17 ~~Q~lLNQLrEITGI------------qD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 17 QGQMLLNQLREITGI------------QDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 333478888886542 355778889999999999999988654
No 58
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.65 E-value=1.2e+02 Score=20.13 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.....+-|+++++|++.|.+-|..+
T Consensus 34 ~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 34 PREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 46678888899999999999877643
No 59
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.50 E-value=76 Score=19.75 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 024946 67 DDEDMILWFLKDR-KFSIEESLAKLTKA 93 (260)
Q Consensus 67 ~~d~~llRfLra~-~~dv~~A~~~l~~~ 93 (260)
.+.....+-|+++ ++|++.|.+-|..+
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3567788899999 68999998887665
No 60
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=28.48 E-value=90 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
.++.-...-|+.++||+++|.+.|-
T Consensus 175 f~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 175 FDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4566677788888888888887764
No 61
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=28.05 E-value=88 Score=25.74 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 41 ~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
+.+.|.+|...-. .++..-.+||.+++||++.|...+-..
T Consensus 15 ~~~~i~qF~~iTg-------------~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 15 EQEAIESFTSLTK-------------CDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp HHHHHHHHHHHHC-------------CCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-------------CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3457888877542 367889999999999999999876443
No 62
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=26.90 E-value=30 Score=28.82 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=23.2
Q ss_pred ccccceEEEcCCcchHHHHHHhhhccccc
Q 024946 204 KRLGEVLFVEAPFVFKPFWQLTKPLLKSY 232 (260)
Q Consensus 204 ~rl~~i~ivN~p~~~~~~~~~vkpfL~~~ 232 (260)
..=..++|||+||-+....+-+-|+|.+.
T Consensus 235 m~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 235 MTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred cCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 33356999999999998888888887763
No 63
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=26.65 E-value=63 Score=17.47 Aligned_cols=18 Identities=0% Similarity=0.165 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHHH
Q 024946 33 NCQSDPHESRKLVLQVKE 50 (260)
Q Consensus 33 ~~~~~~e~~~~~i~elr~ 50 (260)
..++|.|.+..-|+.||+
T Consensus 15 ~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 15 DPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHhHHHHHhc
Confidence 458888888888888876
No 64
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=25.70 E-value=64 Score=18.72 Aligned_cols=24 Identities=8% Similarity=-0.118 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKL 90 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l 90 (260)
.+....++-|.++++|++.|..-|
T Consensus 16 F~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 16 FPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp CCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 467788899999999999998765
No 65
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.64 E-value=93 Score=19.33 Aligned_cols=25 Identities=12% Similarity=-0.108 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhcCC-CHHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKF-SIEESLAKLTK 92 (260)
Q Consensus 68 ~d~~llRfLra~~~-dv~~A~~~l~~ 92 (260)
+.....+-|+++++ |++.|.+-|-.
T Consensus 32 ~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 32 PRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 56778999999998 99999987753
No 66
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.52 E-value=1.2e+02 Score=21.19 Aligned_cols=60 Identities=8% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 024946 32 KNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWR 97 (260)
Q Consensus 32 ~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR 97 (260)
+.+++|++.+ ..|..|++-... ..+. +......-+...+.+-+||-.+|-..+.+..+-.
T Consensus 14 ~~L~LTd~Qk-~qir~L~~~~r~---~~~~--~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~ 73 (108)
T 3o39_A 14 KDLNLTDAQK-QQIREIMKGQRD---QMKR--PPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQR 73 (108)
T ss_dssp CCSCCCHHHH-HHHHHHHHTTTT---SCCC--CCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHH---hccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 5789987554 455665554432 2221 1112345567788899999888877776655544
No 67
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=24.00 E-value=66 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=25.5
Q ss_pred cceEEEEeCCCCCCCCCCHHHHHHHHHHHhccccccccceEEEcCCcchHHHHHH
Q 024946 170 EQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 224 (260)
Q Consensus 170 ~~~~~IiD~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~ 224 (260)
+|++++.|+ |-+..| . .+.+.. .. .++.|+|.|.+..++-..
T Consensus 59 dgVlvltDL-Ggsp~N----~---~~al~~-~~----~~v~viNlPmvega~~aa 100 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMN----L---DLVSEM-TD----KELTIFNVPLIEGAYTAS 100 (131)
T ss_dssp SEEEEEESS-GGGHHH----H---HHHHHT-CS----SEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHH----H---HHHHHh-cC----CCEEEEEhhHHHHHHHHH
Confidence 699999999 544221 1 111111 11 378888999997666543
No 68
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=21.74 E-value=58 Score=28.16 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~ 93 (260)
...|+|++ ++|+.|..+ -.+....++-|++|++|++.|...|-.+
T Consensus 319 i~~t~ee~-eaI~rL~~m--------------GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 319 IQVTPQEK-EAIERLKAL--------------GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp CCCCTTTH-HHHHHHHHH--------------TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred ccCCCcCH-HHHHHHHHc--------------CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 36677776 478777654 1245678889999999999999888765
No 69
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.60 E-value=1.3e+02 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhc--CCCHHHHHHHHHH
Q 024946 45 VLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDR--KFSIEESLAKLTK 92 (260)
Q Consensus 45 i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~--~~dv~~A~~~l~~ 92 (260)
-..|++|+.... -| ...|-..+.+||... +-|+++|...++-
T Consensus 42 K~lL~~Wv~s~~--~P----~~~DV~~l~~yL~~lVeek~Lek~~~vlk~ 85 (124)
T 3vu7_H 42 KTLLREWITTIS--DP----MEEDILQVVKYCTDLIEEKDLEKLDLVIKY 85 (124)
T ss_dssp HHHHHHHHHHHC--SC----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CC----CHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 366788887653 22 344556777777543 5588888766543
No 70
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.78 E-value=86 Score=17.93 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHH
Q 024946 68 DEDMILWFLKDRKFSIEESLAKLT 91 (260)
Q Consensus 68 ~d~~llRfLra~~~dv~~A~~~l~ 91 (260)
+.....+-|++++ |++.|.+-|.
T Consensus 22 ~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 22 TREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp CHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHH
Confidence 4567788888887 9999988764
No 71
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=20.74 E-value=1.8e+02 Score=21.09 Aligned_cols=59 Identities=7% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 024946 32 KNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKW 96 (260)
Q Consensus 32 ~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~~~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~w 96 (260)
..+++|++.+ +.|.+|++..... .. ........-+...+.+-+||-.++...+.+....
T Consensus 30 ~~L~LT~eQ~-~qir~i~~~~r~~---~~--~~~~~~r~~l~~Li~a~~fDeaav~al~~~~~~~ 88 (138)
T 3oeo_A 30 KDLNLTDAQK-QQIREIMKGQRDQ---MK--RPPLEERRAMHDIITSDTFDKVKAEAQIAKMEEQ 88 (138)
T ss_dssp CCSCCCTTHH-HHHHHHHHHHSSS---SC--CCCTTHHHHHHHHHTCSSCCHHHHHHHHGGGSHH
T ss_pred hcCCCCHHHH-HHHHHHHHHHHHH---HH--HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 5799998665 5677777765433 21 1123344667777788899988877666554443
No 72
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.64 E-value=1.5e+02 Score=17.86 Aligned_cols=34 Identities=6% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH----HHHHHHhhhcCC
Q 024946 69 EDMILWFLKDRKFSIEESLAKL----TKAIKWRQEFRV 102 (260)
Q Consensus 69 d~~llRfLra~~~dv~~A~~~l----~~~~~wR~~~~~ 102 (260)
..++.+-|..+++|+.+|++.| ...+.+-+++++
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi 58 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNI 58 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCC
Confidence 4678888999999999999988 233333355654
No 73
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=20.40 E-value=48 Score=26.34 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCC-CC--------C---CCCCHHHHHH----HHHhcCC--CHHHHHHHHHHHHH
Q 024946 34 CQSDPHESRKLVLQVKERLEKDYNSLPV-GK--------N---GRDDEDMILW----FLKDRKF--SIEESLAKLTKAIK 95 (260)
Q Consensus 34 ~~~~~e~~~~~i~elr~~l~~~~~~lp~-~~--------~---~~~~d~~llR----fLra~~~--dv~~A~~~l~~~~~ 95 (260)
+.+++++. ..+++.++.+++-+-.+-. |. | ...+...+++ .|...+- ..+...+.+....+
T Consensus 87 l~Ls~~e~-~~l~~~~~~L~~lGf~ie~fg~~~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~A 165 (220)
T 3ncv_A 87 FAASHEEC-AALADHAETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMS 165 (220)
T ss_dssp EECCHHHH-HHHHHHHHHHHHTTCEEECCSTTEEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHT
T ss_pred EEcCHHHH-HHHHHHHHHHHhCCCEEEECCCCEEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 45666655 4788888888876544321 11 1 1223333333 3322211 12223334444444
Q ss_pred HhhhcCC-CCCChhhHHHHHhcCceeeccCCCCCCCcEEEEe
Q 024946 96 WRQEFRV-SELNEDSVRGIAESGKAYVHDFLDINERPVLIVV 136 (260)
Q Consensus 96 wR~~~~~-~~i~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~ 136 (260)
.|..... +.++.+++...++.-...-.++...+|||+++--
T Consensus 166 Cr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l 207 (220)
T 3ncv_A 166 CHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL 207 (220)
T ss_dssp TCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE
T ss_pred HHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEEe
Confidence 5555554 5677777766554322233445688999998753
No 74
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=20.36 E-value=1.7e+02 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 024946 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (260)
Q Consensus 67 ~~d~~llRfLra~~~dv~~A~~~l~~ 92 (260)
.|...-.-||.-++|++++|...+-.
T Consensus 58 ~~~~~~~~~l~~~~w~~~~~~~~~~~ 83 (362)
T 4gew_A 58 TDEAFAQSILQDVDWDLKKALDVFYG 83 (362)
T ss_dssp CCHHHHHHHTTSSSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcCchHHHHHHHHcC
Confidence 47788899999999999999998763
No 75
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=20.20 E-value=1.6e+02 Score=18.73 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcC
Q 024946 70 DMILWFLKDRKFSIEESLAKLTKAIKWRQEFR 101 (260)
Q Consensus 70 ~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~ 101 (260)
-.+..-|..++||.++-...+..+.+.++.|-
T Consensus 12 caiQ~CL~~N~yd~skCq~~id~L~eCc~~~~ 43 (68)
T 1hp8_A 12 CEIQKCLQANSYMESKCQAVIQELRKCCAQYP 43 (68)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHc
Confidence 34677899999999999999999999998873
Done!