Query 024947
Match_columns 260
No_of_seqs 128 out of 1113
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_B 60S ribosomal protein L 100.0 2E-112 8E-117 767.6 16.1 260 1-260 1-260 (261)
2 4a17_A RPL8; eukaryotic riboso 100.0 3E-110 1E-114 754.3 17.3 255 1-255 1-256 (264)
3 3jyw_B 60S ribosomal protein L 100.0 4E-108 1E-112 734.6 7.1 243 2-244 1-243 (243)
4 3j21_B 50S ribosomal protein L 100.0 8E-105 3E-109 712.2 16.6 237 1-246 1-238 (239)
5 1vq8_A 50S ribosomal protein L 100.0 7E-104 2E-108 706.1 15.7 238 1-249 1-239 (240)
6 3v2d_D 50S ribosomal protein L 100.0 1.3E-83 4.4E-88 584.9 18.4 210 11-235 42-254 (276)
7 3r8s_C 50S ribosomal protein L 100.0 1.6E-83 5.4E-88 583.0 16.5 210 11-236 41-252 (271)
8 3bbo_E Ribosomal protein L2; l 100.0 1.3E-83 4.3E-88 583.6 -0.6 211 11-236 38-251 (269)
9 1giy_D 50S ribosomal protein L 100.0 2.9E-80 9.8E-85 533.8 19.1 178 28-212 1-178 (178)
10 1rl2_A Protein (ribosomal prot 100.0 1.5E-58 5.2E-63 384.5 12.1 137 28-171 1-137 (137)
11 2ftc_B Mitochondrial ribosomal 100.0 1.8E-54 6E-59 359.6 15.0 131 45-183 1-136 (136)
12 2cqa_A RUVB-like 2; TIP48, TIP 67.0 15 0.0005 28.3 6.2 50 36-91 9-72 (95)
13 1oei_A Major prion protein; oc 45.7 9.7 0.00033 22.4 1.5 11 208-218 6-16 (26)
14 2dhx_A Poly (ADP-ribose) polym 30.5 7.7 0.00026 30.3 -0.8 60 42-112 37-99 (104)
15 3tzg_A Hypothetical protein BV 29.3 65 0.0022 27.3 4.7 56 40-123 18-73 (252)
16 1lam_A Leucine aminopeptidase; 28.1 64 0.0022 31.2 5.0 62 40-101 224-331 (484)
17 1gyt_A Cytosol aminopeptidase; 24.3 72 0.0025 31.0 4.6 62 40-101 244-351 (503)
18 2l8d_A Lamin-B receptor; DNA b 24.3 76 0.0026 22.8 3.5 26 37-66 23-48 (66)
19 3sgi_A DNA ligase; HET: DNA AM 23.8 28 0.00097 34.7 1.7 106 32-139 321-450 (615)
20 2dig_A Lamin-B receptor; tudor 20.8 87 0.003 22.6 3.3 34 26-66 18-51 (68)
No 1
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=2.5e-112 Score=767.58 Aligned_cols=260 Identities=94% Similarity=1.502 Sum_probs=251.1
Q ss_pred CCccceeeecCCCCcccccccccCCcceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEecc
Q 024947 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAE 80 (260)
Q Consensus 1 mgk~~~~qr~g~~~~~R~~~~~~~gk~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~e 80 (260)
|||+|+.||+|+|++||+++||++|+.+||+|||+|++..++++|++|||||||||+||||.|.||+.++.+++||||||
T Consensus 1 Mg~~i~~qr~G~g~~fra~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlV~~~dg~~~k~~k~yIlApe 80 (261)
T 3iz5_B 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80 (261)
T ss_dssp CCSCCHHHHSSSCTTTSCCTTTSCCCCCCCCCCSCCBSSSSEEEEEEEEEETTTTEEEEEEECCCCSSSCCCCCEEECBT
T ss_pred CCCcchhhcCCCCCCccCccccccCCcccCceecccccCCccEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEecc
Confidence 99999999999999999999999999999999999998889999999999999999999999999988877899999999
Q ss_pred CCccccEEEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeC
Q 024947 81 GMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPS 160 (260)
Q Consensus 81 gl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~ 160 (260)
||++||+|+|+.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+++|++
T Consensus 81 Gl~vGd~I~sG~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~ 160 (261)
T 3iz5_B 81 GMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPS 160 (261)
T ss_dssp TCBTTCEEEBSTTCCSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECT
T ss_pred CCCCCCEEEeCCCCCCCCCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999777999999999999999999
Q ss_pred CCceeEEeeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeee
Q 024947 161 GCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240 (260)
Q Consensus 161 ~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg~ia~ 240 (260)
+|+||||+|||.+|.+++|+|||++||+|++++++||+||||||||||||||||||||+|+||||+|+||||||||+|||
T Consensus 161 ~CrATIG~Vsn~~~~~k~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGGGe~q~iG~pstv~r~appG~KvG~iaa 240 (261)
T 3iz5_B 161 SCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240 (261)
T ss_dssp TCEEEESCBSSTTTTTSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCTTCCSSSCCCSSCSEECSSSCTTTCCSEETC
T ss_pred CCcEEEEEecCCccccceecccchhhhhhhccCCCCCccceeeeCCccCCCCCCCCCCCCCCCcccCCCCCcceeceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccchhhhhhhhhhcC
Q 024947 241 RRTGRLRGQAAATAAKADKA 260 (260)
Q Consensus 241 rrtg~~r~~~~~~~~~~~~~ 260 (260)
||||++||.++...+++|||
T Consensus 241 rrtG~~~g~~~~~~~~~~~~ 260 (261)
T 3iz5_B 241 RRTGRLRGQAAATAAKADKA 260 (261)
T ss_dssp SCCSSSSCCSCCCCC-----
T ss_pred cccccccccccccccccccc
Confidence 99999999999999999986
No 2
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=3.1e-110 Score=754.29 Aligned_cols=255 Identities=64% Similarity=1.146 Sum_probs=247.3
Q ss_pred CCccceeeecCCC-CcccccccccCCcceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEec
Q 024947 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA 79 (260)
Q Consensus 1 mgk~~~~qr~g~~-~~~R~~~~~~~gk~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~ 79 (260)
|||+|+.||+|+| ++||+++||++|+.+||+|||+|++..++++|++|||||||||+||||.|.||+.++.+++|||||
T Consensus 1 Mg~~i~~qr~G~g~~~fr~~~~~r~g~~~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~YIlAp 80 (264)
T 4a17_A 1 MGRVIRAQRKGRANGVYKSHKSGRIAPAQYRVYDFAERQGYIRGCIRDIVHEPGRGAPLAEVAFRDPYRYKTNKEHFIAA 80 (264)
T ss_dssp -CCCCHHHHTTCSSSSCCCCCTTCCCCCCCCCCCHHHHHSEEEEEEEEEECCTTCSSCEEEEEEECTTSSCEEEEEEECB
T ss_pred CCCcchhhcCCCCCCceeCCccccccccccceeeecccCCCcCEEEEEEEECCCCCceEEEEEecCCCcccceEEEEEee
Confidence 9999999999997 999999999999999999999998888999999999999999999999999998777789999999
Q ss_pred cCCccccEEEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEe
Q 024947 80 EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVP 159 (260)
Q Consensus 80 egl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (260)
|||++||+|+|+.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+|+|+
T Consensus 81 eGl~vGd~I~sg~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~ 160 (264)
T 4a17_A 81 EGQYSGQYVYCGLKAQIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIP 160 (264)
T ss_dssp TTCBTTCEEEEESSCCCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred cCCccccEEEECCCCCCCcCCcccHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999987799999999999999999
Q ss_pred CCCceeEEeeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceee
Q 024947 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIA 239 (260)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg~ia 239 (260)
++|+||||+|||.++.+++|+|||++||+|+.++++||+||||||||||||||||||||+|+||||+|+||||||||+||
T Consensus 161 ~~CrATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNPVDHPHGGGe~q~iG~pstv~r~appG~KvG~ia 240 (264)
T 4a17_A 161 GSCRATVGIVAGGGRTDKPILKAGNQFHKYARKRKSWPRVRGVAMNPVDHPHGGGNHQHIGHPATVSKWASAGQKVGLRA 240 (264)
T ss_dssp TTCEEEESCBSSTTGGGSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCSSCCSSSCCCCSCSEECTTCCGGGCCSEES
T ss_pred ccCcEEEEeccCCccccceeeecchhhhhhhccCCCCCCccceeeCCccCCCCCCCCCCCCCCCCccCCCCCcceeceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCcccchhhhhhh
Q 024947 240 ARRTGRLRGQAAATAA 255 (260)
Q Consensus 240 ~rrtg~~r~~~~~~~~ 255 (260)
|||||++||.++...|
T Consensus 241 arrTG~~~g~~~~~~~ 256 (264)
T 4a17_A 241 ARRTGLVRGGQKEKMA 256 (264)
T ss_dssp CSCCSCCCSCTHHHHH
T ss_pred ccccccccccchhHHH
Confidence 9999999998876544
No 3
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=3.7e-108 Score=734.63 Aligned_cols=243 Identities=65% Similarity=1.176 Sum_probs=238.5
Q ss_pred CccceeeecCCCCcccccccccCCcceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccC
Q 024947 2 GRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEG 81 (260)
Q Consensus 2 gk~~~~qr~g~~~~~R~~~~~~~gk~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~eg 81 (260)
||+|+.||+|+|++||+++||++|+++||+|||+|++..++++|++|||||||||+||||.|.||+.++.+++|||||||
T Consensus 1 g~~i~~qr~G~g~~fr~~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~yIlApeG 80 (243)
T 3jyw_B 1 GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEG 80 (243)
T ss_dssp CCCCTTTTTSSCSTTCCCSSSSCCCSCCCCCCSCCSSCSSCCBBCCCCEETTTTEECCBBCCSSCCSSSSCCCBCCCCTT
T ss_pred CCccceecCCCCCcccCCccccccchhcceeeecccCCCcCEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEeecC
Confidence 79999999999999999999999999999999999988899999999999999999999999999777778999999999
Q ss_pred CccccEEEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCC
Q 024947 82 MYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSG 161 (260)
Q Consensus 82 l~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~ 161 (260)
|++||+|+|+.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+|+|+++
T Consensus 81 l~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~ 160 (243)
T 3jyw_B 81 VHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSD 160 (243)
T ss_dssp CCSSCBCCCSTTCCCCBTCEEESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSC
T ss_pred CccccEEEECCCCCCCcCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999997779999999999999999999
Q ss_pred CceeEEeeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeee
Q 024947 162 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAR 241 (260)
Q Consensus 162 c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg~ia~r 241 (260)
|+||||+|||.++.+++|+|||++||+|+.++++||+||||||||||||||||||||+|+||||+|+||||||||+||||
T Consensus 161 c~ATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNpVDHPHGGGe~q~iG~pstv~r~appg~kvG~iaar 240 (243)
T 3jyw_B 161 ARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAAR 240 (243)
T ss_dssp CEEEESCCSCCCSSSSCCSCSTTTTTSTTTSCSCCSCCCTTTSCTTTSTTCCTTTTCCSSCSEECSSCCSSSSCSEESCS
T ss_pred CeEEEEeccCCccccceecccChhhhhhhccCCCCCccCceeeCCccCCCCCCCCCCCCCCCCcCCCCCCcceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 024947 242 RTG 244 (260)
Q Consensus 242 rtg 244 (260)
|||
T Consensus 241 rtG 243 (243)
T 3jyw_B 241 RTG 243 (243)
T ss_dssp SCC
T ss_pred cCC
Confidence 997
No 4
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.9e-105 Score=712.19 Aligned_cols=237 Identities=49% Similarity=0.886 Sum_probs=231.9
Q ss_pred CCccceeeecCCC-CcccccccccCCcceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEec
Q 024947 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA 79 (260)
Q Consensus 1 mgk~~~~qr~g~~-~~~R~~~~~~~gk~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~ 79 (260)
|||+|+.||+|+| ++||+++|+++|+.+||+|||+ ++..++++|++|||||||||+||||.|.||+ ++|||||
T Consensus 1 mg~~i~~qr~G~g~~~f~~~~~~~~~~~~yR~iDf~-r~~~i~g~V~~IeyDPnRsA~IALV~~~dge-----k~YIlAp 74 (239)
T 3j21_B 1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYT-QEKTLRGVVEEIMHDPGRTAPVARVKFENGI-----EKLIIAP 74 (239)
T ss_dssp CCCCCHHHHHTTTCGGGCCCSSSCCCCCCCCSTTCS-TTCCEEEEEEEEEEETTTTEEEEEEEESSSC-----EEEECCB
T ss_pred CCCcchhhccCCCCCceeCCcccccchhhcceeccc-cCCCccEEEEEEEECCCCCeeEEEEEecCCC-----EEEEEcc
Confidence 9999999999999 9999999999999999999999 4668899999999999999999999999994 8999999
Q ss_pred cCCccccEEEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEe
Q 024947 80 EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVP 159 (260)
Q Consensus 80 egl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (260)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| ++++++|||||||+|+|+
T Consensus 75 eGl~vGd~I~sG~~a~i~~GN~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~v~ 152 (239)
T 3j21_B 75 EGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EPDKVIVQLPSGELKAFN 152 (239)
T ss_dssp TTCCTTCEEEESSSSCSSTTCEEETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEE--CSSCEEEECTTSCEEEEC
T ss_pred ccCccccEEEECCCCCCCcCCEeeccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEe--cCCEEEEEcCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred CCCceeEEeeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceee
Q 024947 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIA 239 (260)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg~ia 239 (260)
.+|+||||+|||.+|.+++|+|||++||+|+.++++||+||||||||||||||| .+||+|+|||++|+||||||||+||
T Consensus 153 ~~c~AtIG~Vsn~~~~~~~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGG-g~~~~Grps~vsr~appg~kvG~ia 231 (239)
T 3j21_B 153 PMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGG-KEHHPGKPTTTSRRAPPGRKVGHIA 231 (239)
T ss_dssp TTCEEEESCBSCCSTTTSCCCSHHHHHHHHTSSCCCCSCCCSTTSCTTTCSSCC-SSSSCSSCSCBCSSCCTTSCCSSBT
T ss_pred ccCeEEEeeccCcccccceeeecChhhccchhhcCCCceecceeeccccCCCCC-CCCCCCccCCcCCCCCCcceeeeee
Confidence 999999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred eeccCcc
Q 024947 240 ARRTGRL 246 (260)
Q Consensus 240 ~rrtg~~ 246 (260)
|||||++
T Consensus 232 arrtG~~ 238 (239)
T 3j21_B 232 ARRTGRR 238 (239)
T ss_dssp CSCCSSC
T ss_pred eccccCC
Confidence 9999964
No 5
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=6.6e-104 Score=706.07 Aligned_cols=238 Identities=48% Similarity=0.836 Sum_probs=230.7
Q ss_pred CCccceeeecCCC-CcccccccccCCcceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEec
Q 024947 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA 79 (260)
Q Consensus 1 mgk~~~~qr~g~~-~~~R~~~~~~~gk~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~ 79 (260)
|||+|+.||+|+| ++||+++|+++|+.+||+|| | +..++++|++|||||||||+||||.|.|++ ++|||||
T Consensus 1 Mgk~i~~qr~G~g~~~fr~~~~~~~~~~~yR~iD--R-~~~i~g~V~~IeyDPnRsA~IAlv~y~dg~-----k~yIlAp 72 (240)
T 1vq8_A 1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVE--D-GDVIAGTVVDIEHDPARSAPVAAVEFEDGD-----RRLILAP 72 (240)
T ss_dssp -CCCCHHHHHTTCCGGGSCCGGGCCCCCCCCCCC--S-SSCCEEEEEEEEEETTTTEEEEEEEETTSC-----EEEECCB
T ss_pred CCccchhhccCCCCCcccCcCccccCchhceeee--c-cCCccEEEEEEEECCCCceeEEEEEecCCC-----EEEEEec
Confidence 9999999999999 69999999999999999999 6 678899999999999999999999999995 8999999
Q ss_pred cCCccccEEEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEe
Q 024947 80 EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVP 159 (260)
Q Consensus 80 egl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (260)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+
T Consensus 73 ~gl~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--e~~~~~vrLPSGe~r~v~ 150 (240)
T 1vq8_A 73 EGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLD 150 (240)
T ss_dssp TTCBTTCEEEBSTTCCSCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEEC--CSSCEEEECTTSCEEEEC
T ss_pred CCCccCeEEEECCCccccccccccccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred CCCceeEEeeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceee
Q 024947 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIA 239 (260)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg~ia 239 (260)
++|+||||+|||.+|.+++|+|||++||+++.++++||+|||||||||||||||||||++|+||||+|+||||||||+||
T Consensus 151 ~~crAtIG~Vsn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNPVDHPHGGGeg~~~Gr~stv~r~appG~KvG~ia 230 (240)
T 1vq8_A 151 PQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIA 230 (240)
T ss_dssp TTCEEEESCBTTTTTTTSCCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEET
T ss_pred chheeeEEEecCcchhccccccCccccccccccCCCCCceeeeeeccccCCCCCCCCCCCCCCCCccCCCCCccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCcccch
Q 024947 240 ARRTGRLRGQ 249 (260)
Q Consensus 240 ~rrtg~~r~~ 249 (260)
||||| ++|+
T Consensus 231 arrtG-r~~~ 239 (240)
T 1vq8_A 231 SKRTG-RGGN 239 (240)
T ss_dssp CSCCS-SCC-
T ss_pred ecccC-CCCC
Confidence 99999 5554
No 6
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=1.3e-83 Score=584.89 Aligned_cols=210 Identities=33% Similarity=0.494 Sum_probs=197.1
Q ss_pred CCCCcccccccccCC--cceEEeeeccc-ccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccE
Q 024947 11 GAGSVFKSHTHHRKG--PARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQF 87 (260)
Q Consensus 11 g~~~~~R~~~~~~~g--k~~yr~IDf~R-~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~ 87 (260)
||-.++|++++|++| |++||+|||+| ++.+++++|++|||||||||+||||.|.||+ ++||||||||++||+
T Consensus 42 GRNn~GrIt~rhrGGGhKr~yR~IDf~R~~k~~i~g~V~~IeyDPnRsA~IAlv~~~dg~-----k~yIlAp~gl~~Gd~ 116 (276)
T 3v2d_D 42 GRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGE-----KRYIIAPDGLQVGQQ 116 (276)
T ss_dssp TBCTTSCBSSSSBCCCCCCEEECCCCCCGGGTTCCEEEEEEECCTTSSSCEEEEEETTSC-----EEEEECBTTCCTTCE
T ss_pred CcCCCCCEEEeecCCCcccceEEeeeccccCCCCCEEEEEEEECCCCCceEEEEEeCCCC-----EEEEEeeCCCcCCCE
Confidence 444889999999999 78999999999 7778899999999999999999999999995 899999999999999
Q ss_pred EEEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEE
Q 024947 88 VYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 167 (260)
Q Consensus 88 I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG 167 (260)
|++++++++++||+|||.+||+||.|||||+.||+||||||||||||+|+++ ++++++|+|||||+++|+.+|+||||
T Consensus 117 I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~i~~~c~AtIG 194 (276)
T 3v2d_D 117 VVAGPDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR--EGDYVILRLPSGELRKVHGECYATVG 194 (276)
T ss_dssp ECBSTTCCSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEE--ETTEEEEECTTSCEEEEETTCEEEES
T ss_pred EEeCCCCCCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEEcccCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred eeeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024947 168 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235 (260)
Q Consensus 168 ~vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kv 235 (260)
+|||.+|.+++|+|||++||+ ++||+||||||||||||||||||++.|.+.+++ |+|+..
T Consensus 195 ~Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGVAMNPVDHPHGGGeGr~~~g~~p~s---pwG~~~ 254 (276)
T 3v2d_D 195 AVGNADHKNIVLGKAGRSRWL-----GRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPAS---PWGWQT 254 (276)
T ss_dssp CBSCGGGGGCCCCSHHHHHHT-----TBCCCCCGGGSCTTTCTTCCCSSCCCCCSSCBC---TTSCBC
T ss_pred eecCcchhhcEeccCcccccC-----CCCCccCeEecCCccCCCcCcCCCCCCCCCCcC---cccccc
Confidence 999999999999999999998 679999999999999999999999755455666 666554
No 7
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=1.6e-83 Score=583.02 Aligned_cols=210 Identities=34% Similarity=0.588 Sum_probs=197.0
Q ss_pred CCCCcccccccccCC--cceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEE
Q 024947 11 GAGSVFKSHTHHRKG--PARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFV 88 (260)
Q Consensus 11 g~~~~~R~~~~~~~g--k~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I 88 (260)
||-.++|++++|++| |++||+|||+|++.+++++|++|||||||||+||||.|.||+ ++||||||||++||+|
T Consensus 41 GRNn~GrIt~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~-----k~YIlAp~gl~~Gd~I 115 (271)
T 3r8s_C 41 GRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGE-----RRYILAPKGLKAGDQI 115 (271)
T ss_dssp TBCTTSCBSSTTBCCCCCCCEECBCCSCCCBSCCEEEEEEEECTTSSSEEEEEEETTSC-----EEEEECBTTCCSSCBC
T ss_pred CcCCCCCEEEeecCCCcCcceEEEeeccccCCCCEEEEEEEECCCCceeEEEEEecCCC-----EEEEEeeCCCcCCCEE
Confidence 444899999999999 789999999999888999999999999999999999999995 8999999999999999
Q ss_pred EEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEEe
Q 024947 89 YCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 168 (260)
Q Consensus 89 ~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~ 168 (260)
+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|+++ |+++++|+|||||+++|+++|+||||+
T Consensus 116 ~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~i~~~c~ATIG~ 193 (271)
T 3r8s_C 116 QSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGE 193 (271)
T ss_dssp CBSSSSCSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEEC--STTEEEEECTTSCEEEEETTCEEEESC
T ss_pred EECCCCCCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEEcccCeEEEEe
Confidence 999999999999999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred eeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024947 169 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 236 (260)
Q Consensus 169 vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~~G~~s~~~r~appg~kvg 236 (260)
|||.+|.+++|+|||++||+ ++||+||||||||||||||||||+++|++ +++ |+|+.--
T Consensus 194 Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGVAMNPVDHPHGGGeGk~ggr~-p~t---PWG~~tk 252 (271)
T 3r8s_C 194 VGNAEHMLRVLGKAGAARWR-----GVRPTVRGTAMNPVDHPHGGGEGRNFGKH-PVT---PWGVQTK 252 (271)
T ss_dssp BSCSGGGGCCCCSHHHHHTT-----TBCCCCCGGGSCTTTCSSCCCSSSCCCSC-CBC---TTSCBCT
T ss_pred ecCcchhhcEecccccccCC-----CCCCccCeEeeCCccCCccCcCCCCCCCC-CCC---ccccccc
Confidence 99999999999999999998 67999999999999999999998865543 344 7776543
No 8
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.3e-83 Score=583.60 Aligned_cols=211 Identities=33% Similarity=0.562 Sum_probs=198.3
Q ss_pred CCCCcccccccccCC--cceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEE
Q 024947 11 GAGSVFKSHTHHRKG--PARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFV 88 (260)
Q Consensus 11 g~~~~~R~~~~~~~g--k~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I 88 (260)
||-.++|++++|++| |++||+|||+|+...++++|++|||||||||+||||.|.||+ ++||||||+|++||+|
T Consensus 38 GRNn~Grit~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~y~dg~-----k~yIlAp~gl~~Gd~I 112 (269)
T 3bbo_E 38 GRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGE-----KRYILHPRGAIIGDTI 112 (269)
T ss_dssp SCSCCSSCCCSCCCCCSCCCCCCCCCSCCCCSCCCCCCCCCCCSSSCSCCCCCCCSSCC-----CCCCCCCSSCSSCCCC
T ss_pred ccCCCCCEEEEecCCccccccceeeecccCCCccEEEEEEEECCCCCeeEEEEEeCCCC-----EEEEEchhhcccccEE
Confidence 444899999999999 789999999999888999999999999999999999999994 7899999999999999
Q ss_pred EEecCccccCCCcccCcCCCCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEEe
Q 024947 89 YCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 168 (260)
Q Consensus 89 ~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~ 168 (260)
+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|+++ |+++++|+|||||+++|+++|+||||+
T Consensus 113 ~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~ 190 (269)
T 3bbo_E 113 VSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATVGQ 190 (269)
T ss_dssp CCSSSCCCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSS--CSTTCCCBCSTTCBCCCCSSCEECSCC
T ss_pred EECCCCCCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEe--cCCEEEEECCCCCEEEEchhhheeEee
Confidence 999999999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred eeCCCcccchhhhcccccccccccCCCCceeceeecCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCccc
Q 024947 169 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQH-IGHASTVRRDAPPGQKVG 236 (260)
Q Consensus 169 vsn~~~~~~~lgKAG~~r~~~~~~~~~~P~VRGvAMNpvDHPHGGG~~~~-~G~~s~~~r~appg~kvg 236 (260)
|||.+|.+++|+|||++||+ ++||+||||||||||||||||||++ +|++.+++ |+|+...
T Consensus 191 Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGvAMNPVDHPHGGGeGr~~~Gr~~p~t---pWG~~~k 251 (269)
T 3bbo_E 191 VGNVGVNQKRLGRAGSKRWL-----GKRPVVRGVVMNPVDHPHGGGEGRAPIGRKSPTT---PWGYPAL 251 (269)
T ss_dssp CCCSHHHHSCCCSSSSSSTT-----TCSCSCCCCCSCTTTSSSCCSSSCCCTTSSCCSS---SCCCSCC
T ss_pred ecCchhhhcchhhhhhcccC-----CCCCcccceeeccccCCCCcCCCcCCCCCCCCCC---CCccCcC
Confidence 99999999999999999998 5799999999999999999999985 67765566 6666543
No 9
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=2.9e-80 Score=533.81 Aligned_cols=178 Identities=37% Similarity=0.692 Sum_probs=174.4
Q ss_pred eEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEEEEecCccccCCCcccCcCC
Q 024947 28 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSI 107 (260)
Q Consensus 28 ~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I~sg~~~~~~~Gn~lpL~~I 107 (260)
+||+|||+|++..++++|++|||||||||+||||.|.||+ ++||||||||++||+|++|+++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDP~RsA~IAlv~y~dg~-----~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (178)
T 1giy_D 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGE-----KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (178)
T ss_pred CCceeecccccCCccEEEEEEEECCCCCeEEEEEEecCCC-----EEEEECccCCccccEEEECCCCccccCCCcccccC
Confidence 5999999999888999999999999999999999999994 89999999999999999999999999999999999
Q ss_pred CCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEEeeeCCCcccchhhhcccccc
Q 024947 108 PEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 187 (260)
Q Consensus 108 P~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~lgKAG~~r~ 187 (260)
|+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+++|+||||+|||.+|.+++|+|||++||
T Consensus 76 P~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r~ 153 (178)
T 1giy_D 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHH 153 (178)
T ss_pred CCCCEEEeEeccCCCCeEEEEeCCCeEEEEEe--cCCeEEEECCCCCEEEEcccCcEEEEEecCcchhcCeecccchhhc
Confidence 99999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeceeecCCCCCCCC
Q 024947 188 KFRVKRNCWPKVRGVAMNPVEHPHG 212 (260)
Q Consensus 188 ~~~~~~~~~P~VRGvAMNpvDHPHG 212 (260)
+.+.++++||+||||||||||||||
T Consensus 154 ~gk~k~~~rP~VRGvAMNpvDHPHG 178 (178)
T 1giy_D 154 KMKARGTKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred CCCccCCcCCccceeeeCCccCCCC
Confidence 9999999999999999999999998
No 10
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=1.5e-58 Score=384.48 Aligned_cols=137 Identities=29% Similarity=0.554 Sum_probs=132.9
Q ss_pred eEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEEEEecCccccCCCcccCcCC
Q 024947 28 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSI 107 (260)
Q Consensus 28 ~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I~sg~~~~~~~Gn~lpL~~I 107 (260)
+||+|||+|++..++++|++|||||||||+||||.|.||+ ++|||||+||++||+|++|+++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDPnRsA~IAlv~y~dg~-----k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (137)
T 1rl2_A 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGE-----KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (137)
T ss_dssp CCSCBCSSCCCTTCCEEEEEEEEEGGGTEEEEEEEETTSC-----EEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGS
T ss_pred CCceEecccccCCccEEEEEEEECCCCCEEEEEEEeCCCC-----EEEEEecccCccceEEEECCccccccCCEeehhhC
Confidence 5899999999888999999999999999999999999994 89999999999999999999999999999999999
Q ss_pred CCCCEEEEEeeeCCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEEeeeC
Q 024947 108 PEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAG 171 (260)
Q Consensus 108 P~Gt~I~nIE~~pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn 171 (260)
|+||.|||||++||+||||||||||||+|++| |+++++|||||||+|+|+++|+||||+|||
T Consensus 76 P~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~VsN 137 (137)
T 1rl2_A 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp CTTCEEESEESSTTSCEEESSSSSCCEEEEEE--ETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred CCCCEEEEEEccCCCCcEEEEeCCCeEEEEEE--cCCEEEEECCCCCeEEECCcCcEEEEEccC
Confidence 99999999999999999999999999999999 699999999999999999999999999997
No 11
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=1.8e-54 Score=359.59 Aligned_cols=131 Identities=28% Similarity=0.446 Sum_probs=125.6
Q ss_pred EEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEEEEecC-----ccccCCCcccCcCCCCCCEEEEEeee
Q 024947 45 ITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRK-----ATLVVGNVLPLRSIPEGAVVCNVEHH 119 (260)
Q Consensus 45 V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I~sg~~-----~~~~~Gn~lpL~~IP~Gt~I~nIE~~ 119 (260)
|++|||||||||+||||.+.| +++|||||+||++||+|+++.+ +++++||+|||.+||+||.|||||++
T Consensus 1 V~~IeyDPnRsA~IAlv~~~~------~k~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~ 74 (136)
T 2ftc_B 1 VIQVRYDPCRSADIALVAGGS------RKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESE 74 (136)
T ss_pred CEEEEECCCCCcEEEEEECCC------eeEEEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEecc
Confidence 689999999999999997543 3789999999999999999887 69999999999999999999999999
Q ss_pred CCCCceEEeccCCeEEEEeecCCCCeEEEecCCCceeEEeCCCceeEEeeeCCCcccchhhhcc
Q 024947 120 VGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAG 183 (260)
Q Consensus 120 pg~Ggkl~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~lgKAG 183 (260)
||+||||||||||||+|++| |+++++|||||||+|+|+.+|+||||+|||.+|.+++|||||
T Consensus 75 pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG 136 (136)
T 2ftc_B 75 PGRGAQYIRAAGTCGVLLRK--VNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred CCCCcEEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEECcCCcEEEEEecChhhccceeccCC
Confidence 99999999999999999999 799999999999999999999999999999999999999998
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=66.97 E-value=15 Score=28.31 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=32.6
Q ss_pred cccCCceeEEEEEEeCCCCcc------ceEEEEecCCCccCceeEEEEecc--------CCccccEEEEe
Q 024947 36 ERNGYLKGVITEIIHDPGRGA------PLARVTFRHPFRYQHQKELFVAAE--------GMYTGQFVYCG 91 (260)
Q Consensus 36 R~~~~~~~~V~~IeyDPnRsA------~IAlV~~~~g~~~~~~~~YIlA~e--------gl~~Gd~I~sg 91 (260)
..++.++|.|.+|+.|..++. .|-| +-.|+ ++.|=|.|+ ++.+||+|+.-
T Consensus 9 E~keVyEGEV~ei~~~~~~~~~~~~~~~itL-kT~d~-----ek~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 9 EETEIIEGEVVEIQIDRPATGTGSKVGKLTL-KTTEM-----ETIYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp CCCSEEEEEEEEEEEECTTSSSSSCEEEEEE-ECSSS-----EEEEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEEEEEEEEEEEEEeecCCCCcceEEEEEE-EecCC-----cEEEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 345678999999998877553 3333 32333 466766665 88888888753
No 13
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=45.75 E-value=9.7 Score=22.44 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 024947 208 EHPHGGGNHQH 218 (260)
Q Consensus 208 DHPHGGG~~~~ 218 (260)
-|||||+=+|.
T Consensus 6 gqp~gg~wgqp 16 (26)
T 1oei_A 6 GQPHGGGWGQP 16 (26)
T ss_dssp SSTTSSSSTTT
T ss_pred CCccCCcCCCC
Confidence 47777776543
No 14
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.50 E-value=7.7 Score=30.31 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeEEEEEEeCCCCccceEEEEecCCCccC---ceeEEEEeccCCccccEEEEecCccccCCCcccCcCCCCCCE
Q 024947 42 KGVITEIIHDPGRGAPLARVTFRHPFRYQ---HQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAV 112 (260)
Q Consensus 42 ~~~V~~IeyDPnRsA~IAlV~~~~g~~~~---~~~~YIlA~egl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~ 112 (260)
-|.|.+++|+| .+ |+|.|.|..-.. ..+.|.|-- ..+.-.+ ....-...+.|+.+|.||.
T Consensus 37 GG~V~~v~~~~-~~---AvItF~d~~va~rVL~k~~H~L~~------~~LsV~P-~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 37 GGPVLSWQRLG-CG---GVLTFREPADAERVLAQADHELHG------AQLSLRP-APPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CCCEEEEEEET-TE---EEEEESSHHHHHHHHTCSCCBSSS------SBCEEEE-CCCCCCCCCCCCSCCCCCC
T ss_pred CceeeEEEEcC-Cc---EEEEEcChHHHHHHhcCCcceecC------eEEEEEc-CCCCCcceEeeecCCCCCC
Confidence 37899999999 44 577787742100 001121111 1111111 1234567899999999984
No 15
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; 2.80A {Bacteroides vulgatus}
Probab=29.33 E-value=65 Score=27.32 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=31.8
Q ss_pred CceeEEEEEEeCCCCccceEEEEecCCCccCceeEEEEeccCCccccEEEEecCccccCCCcccCcCCCCCCEEEEEeee
Q 024947 40 YLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHH 119 (260)
Q Consensus 40 ~~~~~V~~IeyDPnRsA~IAlV~~~~g~~~~~~~~YIlA~egl~~Gd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~ 119 (260)
..+..|+.+|||.. .. +|+|.|. -.+| .||.|..|... -+..|...|||...
T Consensus 18 geeeqvlkleydrd--gk--iikygdt-----pvry--------egdqitigqmn-----------clntgnklcnvtfq 69 (252)
T 3tzg_A 18 GEEEQVLKLEYDRD--GK--IIKYGDT-----PVRY--------EGDQITIGQMN-----------CLNTGNKLCNVTFQ 69 (252)
T ss_dssp TTBCCEEEEEECTT--SC--EEEETTE-----EEEE--------ETTEEEECCCC-----------------CEEEEEEE
T ss_pred cchhhheeeeecCC--Cc--eEeeCCc-----ccee--------cCCeeeEeeee-----------ccccCCceeEEEEE
Confidence 34678999999952 22 3445443 1233 56776644332 23467788999999
Q ss_pred CCCC
Q 024947 120 VGDR 123 (260)
Q Consensus 120 pg~G 123 (260)
-|+|
T Consensus 70 igkg 73 (252)
T 3tzg_A 70 IGKG 73 (252)
T ss_dssp EETT
T ss_pred ecCC
Confidence 8887
No 16
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=28.09 E-value=64 Score=31.24 Aligned_cols=62 Identities=26% Similarity=0.156 Sum_probs=40.3
Q ss_pred CceeEEEEEEeCCCC---ccceEEE----EecCCC-cc--------------------------------CceeEEEEec
Q 024947 40 YLKGVITEIIHDPGR---GAPLARV----TFRHPF-RY--------------------------------QHQKELFVAA 79 (260)
Q Consensus 40 ~~~~~V~~IeyDPnR---sA~IAlV----~~~~g~-~~--------------------------------~~~~~YIlA~ 79 (260)
..+-+++.++|.|.. ..+|+|| .|..|- ++ .+..-+|.++
T Consensus 224 ~~pPrli~l~y~g~~~~~~~~i~LVGKGITFDsGG~slKp~~~M~~MK~DMgGAAaVlg~~~aia~l~l~vnv~~~i~~~ 303 (484)
T 1lam_A 224 EEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLC 303 (484)
T ss_dssp SSCCEEEEEEEECSSSTTSCCEEEEECEEEEECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHTTCSSEEEEEEEEE
T ss_pred CCCCeEEEEEECCCCCCCCCcEEEEecceEEcCCCcCCcCccchhhhhccchHHHHHHHHHHHHHHcCCCeeEEEEEEee
Confidence 346789999998854 4689998 333331 11 1122467777
Q ss_pred cCC------ccccEEEEecCccccCCCc
Q 024947 80 EGM------YTGQFVYCGRKATLVVGNV 101 (260)
Q Consensus 80 egl------~~Gd~I~sg~~~~~~~Gn~ 101 (260)
||| ++||+|.+.+...+.+.|+
T Consensus 304 ENm~sg~A~rPgDVits~~GkTVEV~NT 331 (484)
T 1lam_A 304 ENMPSGKANKPGDVVRARNGKTIQVDNT 331 (484)
T ss_dssp EECCSTTSCCTTEEEECTTSCEEEESCT
T ss_pred ccCCCCCCCCCCCEEEeCCCcEEEeecC
Confidence 765 7899999877666666654
No 17
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=24.31 E-value=72 Score=31.01 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=40.5
Q ss_pred CceeEEEEEEeCCCC---ccceEEE----EecCCC-cc--------------------------------CceeEEEEec
Q 024947 40 YLKGVITEIIHDPGR---GAPLARV----TFRHPF-RY--------------------------------QHQKELFVAA 79 (260)
Q Consensus 40 ~~~~~V~~IeyDPnR---sA~IAlV----~~~~g~-~~--------------------------------~~~~~YIlA~ 79 (260)
..+-+++.++|.|.. ..+|+|| .|..|- ++ .+..-+|.++
T Consensus 244 ~~pPrli~l~Y~g~~~~~~~~i~LVGKGITFDsGGislKp~~~M~~MK~DM~GAAaVlg~~~aia~l~l~vnV~~~i~~~ 323 (503)
T 1gyt_A 244 QNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGC 323 (503)
T ss_dssp SSCCEEEEEEEECCCCTTCCCEEEEEEEEEEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEE
T ss_pred CCCCeEEEEEECCCCCCCCCcEEEEcCceEecCCCccccCCcChhhcccccchHHHHHHHHHHHHHcCCCeeEEEEEEee
Confidence 346789999998864 3689998 343331 11 1122467777
Q ss_pred cCC------ccccEEEEecCccccCCCc
Q 024947 80 EGM------YTGQFVYCGRKATLVVGNV 101 (260)
Q Consensus 80 egl------~~Gd~I~sg~~~~~~~Gn~ 101 (260)
||| ++||+|.+.+...+.+.|+
T Consensus 324 ENm~sg~A~rPgDVits~~GkTVEV~NT 351 (503)
T 1gyt_A 324 ENMPGGRAYRPGDVLTTMSGQTVEVLNT 351 (503)
T ss_dssp EECCSTTCCCTTCEEECTTSCEEECSCT
T ss_pred ccCCCCCCCCCCCEEEeCCCcEEEecCC
Confidence 776 7899998877666666654
No 18
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=24.29 E-value=76 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=21.2
Q ss_pred ccCCceeEEEEEEeCCCCccceEEEEecCC
Q 024947 37 RNGYLKGVITEIIHDPGRGAPLARVTFRHP 66 (260)
Q Consensus 37 ~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g 66 (260)
+..-++++|.+|- -++++..|.|.||
T Consensus 23 d~~yYparI~Si~----s~~~~Y~V~fKdg 48 (66)
T 2l8d_A 23 SVLYYEVQVTSYD----DASHLYTVKYKDG 48 (66)
T ss_dssp SSCEEEEEEEEEE----TTTTEEEEEETTS
T ss_pred CccceEEEEEEec----cCCceEEEEecCC
Confidence 3445688999887 6789999999997
No 19
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=23.78 E-value=28 Score=34.75 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred eecccccCCceeEEEEEEeCCCCccceEEEEecCC-----Ccc----CceeEEEEeccCCccccEEEEec---Cc-----
Q 024947 32 LDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHP-----FRY----QHQKELFVAAEGMYTGQFVYCGR---KA----- 94 (260)
Q Consensus 32 IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g-----~~~----~~~~~YIlA~egl~~Gd~I~sg~---~~----- 94 (260)
|=||.-.+...-+|.+|++..+||.-|.-|...++ .++ .++..| |.-.++.+||.|.... -.
T Consensus 321 iA~Kfpaee~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d~-i~~~di~iGD~V~V~rAGdVIP~V~~ 399 (615)
T 3sgi_A 321 IAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASE-IKRKGVLIGDTVVIRKAGDVIPEVLG 399 (615)
T ss_dssp EEEECCCSEEEEECCEECCCBCSSSCBCCBEECCCEECSSSEECCCBCCSTTT-TTTTCCCBTCEEEEECCSSSSCCCCE
T ss_pred EEEcCCCceeEEEEEEEEEecCCCceeeEEEEEEeEEECCEEEEEecCCCHHH-HHHcCCCCCCEEEEEEcCCCccceee
Confidence 55554444556789999999999977765554443 211 011122 3667899999997532 21
Q ss_pred ---cccCCCcccCcCCCCCCEEEEEeeeC-CCC--ceEEecc-CCeEEEEee
Q 024947 95 ---TLVVGNVLPLRSIPEGAVVCNVEHHV-GDR--GVFARCS-GDYAVVISH 139 (260)
Q Consensus 95 ---~~~~Gn~lpL~~IP~Gt~I~nIE~~p-g~G--gkl~RsA-Gt~a~Ii~k 139 (260)
+..+++.-|. .+|.-+.+|+=++.+ -+| ..+|-.. .|-|+++.+
T Consensus 400 vv~~~R~~~~~~~-~~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~~~~ 450 (615)
T 3sgi_A 400 PVVELRDGSEREF-IMPTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRER 450 (615)
T ss_dssp ECTTCCCCCCBCC-CCC-----------------------------------
T ss_pred eccccCCCCCccC-CCCCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHHHHH
Confidence 1234665553 689999999988766 233 4556553 577788765
No 20
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.82 E-value=87 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=25.0
Q ss_pred cceEEeeecccccCCceeEEEEEEeCCCCccceEEEEecCC
Q 024947 26 PARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHP 66 (260)
Q Consensus 26 k~~yr~IDf~R~~~~~~~~V~~IeyDPnRsA~IAlV~~~~g 66 (260)
..+=||. -+..-++++|.+|- -++++.+|.|.||
T Consensus 18 ~VmaRW~---Gd~~yYparItSit----s~~~~Y~VkfKdg 51 (68)
T 2dig_A 18 VVRGRWP---GSSLYYEVEILSHD----STSQLYTVKYKDG 51 (68)
T ss_dssp EEEEECT---TTCCEEEEEEEEEE----TTTTEEEEECTTS
T ss_pred EEEEEcc---CCccceEEEEEEec----cCCceEEEEecCC
Confidence 3455553 33445688999987 6789999999997
Done!