RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024947
(260 letters)
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 147
Score = 183 bits (467), Expect = 1e-59
Identities = 83/147 (56%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 99 GNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIV 158
GN LPL IPEG VCNVE GD G FAR SG A +++H D + +KLPSG K +
Sbjct: 1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRL 58
Query: 159 PSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
CRA IG VAGGGRT+KP +KAGN +HK + + WP VRGVAMN V+HP GGG QH
Sbjct: 59 DPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQH 118
Query: 219 IGHASTVRRDAPPGQKVGLIAARRTGR 245
G ++ R+APPG+KVG IA++RTGR
Sbjct: 119 PGKPKSISRNAPPGRKVGDIASKRTGR 145
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 118 bits (298), Expect = 3e-34
Identities = 50/148 (33%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 98 VGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKI 157
VGN LPLR IP G VV VE AR +G A + + D ++LPSG +
Sbjct: 1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR--EGDYVILRLPSGELRK 58
Query: 158 VPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQ 217
V C A +G V L KAG + P VRG AMNPV+HPHGGG +
Sbjct: 59 VHGECYATVGAVGNADHKNIVLGKAGRSRWL-----GRRPHVRGAAMNPVDHPHGGGEGR 113
Query: 218 HIGHASTVRRDAPPGQKVGLIAARRTGR 245
P G + + R+ +
Sbjct: 114 APRGRPPAS---PWGWQTKGLKTRKRRK 138
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
L2 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 109 bits (275), Expect = 6e-31
Identities = 54/137 (39%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 99 GNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIV 158
GN LP+R+IP G+ V NVE G G AR +G Y +++ D ++L SG + V
Sbjct: 2 GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKV 59
Query: 159 PSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
+ CRA +G+V + L KAG A R P VRG AMNPV+HPHGGG ++
Sbjct: 60 EADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRN 114
Query: 219 IG-HASTVRRDAPPGQK 234
G H T G+K
Sbjct: 115 FGKHPVTPWGVQTKGKK 131
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein
L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 82.5 bits (204), Expect = 3e-21
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 99 GNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIV 158
GN LPL +IP G +V N+E G G R +G A V+ + ++L SG +++
Sbjct: 1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMI 58
Query: 159 PSGCRAMIGQV 169
CRA +G+V
Sbjct: 59 LGKCRATVGEV 69
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 82.1 bits (203), Expect = 7e-21
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 2 GRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLAR 60
GR I+ QR+G G S F++ +H K R ++ G+ + G + +I HDP R AP+A
Sbjct: 1 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAA 57
Query: 61 VTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATL 96
V F + L +A EG+ G + G A +
Sbjct: 58 VEFEDG-----DRRLILAPEGVGVGDELQVGVSAEI 88
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 43.5 bits (103), Expect = 6e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 28 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQF 87
++R +DF + G + I +DP R A +A + + +K +A + + G
Sbjct: 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGME 55
Query: 88 VYCGRKATLVV 98
+ G A + +
Sbjct: 56 IMSGPDADIKI 66
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
protein L2 {Escherichia coli [TaxId: 562]}
Length = 64
Score = 40.1 bits (94), Expect = 9e-06
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 29 FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFV 88
+R +DF + V+ + +DP R A +A V ++ ++ +A +G+ G +
Sbjct: 1 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKD-----GERRYILAPKGLKAGDQI 55
Query: 89 YCGRKA 94
G A
Sbjct: 56 QSGVDA 61
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 125
Score = 31.7 bits (72), Expect = 0.030
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 18 SHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELF 76
+R +DF + + + I +DP R A +A + +K
Sbjct: 50 VRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALL-----HYVDGEKRYI 104
Query: 77 VAAEGMYTGQFVYCGRKA 94
+A +G+ GQ V G A
Sbjct: 105 IAPDGLQVGQQVVAGPDA 122
>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 26.0 bits (56), Expect = 4.6
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 187 HKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRL 246
+ N W + + G++ IG S V +D PP + R +
Sbjct: 129 FPITIGNNVWIG----SHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREI 184
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 25.4 bits (55), Expect = 6.2
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 189 FRVKRNC----WPKVRGVAMNP-VEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRT 243
F + C W A + GG + + + + PG K G I AR
Sbjct: 3 FEIVNRCSYTVWA-----AASKGDAALDAGG--RQLNSGESWTINVEPGTKGGKIWARTD 55
Query: 244 GRLRGQAAATAAKAD 258
+ D
Sbjct: 56 CYFDDSGSGICKTGD 70
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 25.3 bits (54), Expect = 6.3
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 214 GNHQHIGHASTVRRDAPPGQKVGLIAARR 242
+ +G +T+ ++ + A+R
Sbjct: 164 ADDSILGGGATLVKNQDEKGVFVGVPAKR 192
>d1auna_ b.25.1.1 (A:) Pathogenesis-related protein 5d {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 208
Score = 25.0 bits (54), Expect = 8.6
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 189 FRVKRNC----WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARR 242
F V NC W P GGG + + + APPG K+ I R
Sbjct: 4 FEVHNNCPYTVWAAA---------TPVGGG--RRLERGQSWWFWAPPGTKMARIWGRT 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,385
Number of extensions: 47245
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 17
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)