Query 024952
Match_columns 260
No_of_seqs 189 out of 278
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 17:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fs1b2 d.42.1.1 (B:2-68) Cycl 33.9 10 0.00076 24.9 2.2 34 88-126 12-45 (61)
2 d1sqra_ b.43.3.3 (A:) Ribosoma 17.5 28 0.0021 25.1 2.0 25 230-257 46-70 (87)
3 d2c9wc1 d.42.1.1 (C:17-112) El 15.5 14 0.001 25.8 -0.2 40 88-127 12-52 (96)
4 d2asxa1 a.274.1.1 (A:278-331) 15.3 61 0.0044 19.7 3.0 30 100-129 5-34 (54)
5 d1eeja1 c.47.1.9 (A:61-216) Di 14.2 61 0.0044 23.3 3.2 33 84-116 120-156 (156)
6 d1nexa2 d.42.1.1 (A:4-103) Cen 13.4 16 0.0012 24.5 -0.4 39 88-126 12-53 (72)
7 d3bzwa1 c.23.10.9 (A:38-285) U 13.4 28 0.0021 23.8 0.9 12 152-163 10-21 (248)
8 d1okja2 c.55.1.9 (A:107-216) H 13.3 11 0.00077 25.8 -1.4 17 154-174 54-70 (110)
9 d1fx0b1 a.69.1.1 (B:378-485) F 10.5 40 0.0029 25.1 1.0 21 147-167 51-71 (108)
10 d1pyya1 d.11.1.1 (A:632-692) P 10.4 29 0.0021 22.6 0.1 20 118-137 4-23 (61)
No 1
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.92 E-value=10 Score=24.88 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=27.0
Q ss_pred ceeecccCccchhhhhHHHHHHhhhhhccccccCCcccc
Q 024952 88 AYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRP 126 (260)
Q Consensus 88 ~ylldr~~~~~ak~lsn~ikqkrkeka~k~~vplpkv~~ 126 (260)
.|.+||+-....+.|.+|+.. .|-=.+|||.|.+
T Consensus 12 ~f~v~~~~a~~S~tI~~ml~~-----~~~~~Ipl~~V~s 45 (61)
T d1fs1b2 12 IFEVDVEIAKQSVTIKTMLED-----LGMDPVPLPNVNA 45 (61)
T ss_dssp EEEEEGGGGGTCHHHHHHHHH-----TCCSSEECTTCCH
T ss_pred EEEecHHHHHHhHHHHHHHhc-----CCCCCcccCCcCH
Confidence 477899988899999999964 4445799998765
No 2
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]}
Probab=17.51 E-value=28 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=19.9
Q ss_pred ccCCCceecceeeEEccCCCCceeeeeE
Q 024952 230 VTPAGKVVWGKYAQVTNNPENDGCINAV 257 (260)
Q Consensus 230 vT~~GkvvwGkYAqVTSRPGQDG~iNav 257 (260)
+.+.++++|| .||.-.|+.|+|-|.
T Consensus 46 ~~~~~r~iwG---KVtr~HGnsGvVrAk 70 (87)
T d1sqra_ 46 KSPSGKILKG---KIVRVHGTKGAVRAR 70 (87)
T ss_dssp CCSTTCCEEE---EEEEESSSSSCEEEE
T ss_pred ECCCCcEEEe---eEeeecCCCceEEEE
Confidence 4667888987 677789999998775
No 3
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.51 E-value=14 Score=25.83 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=20.6
Q ss_pred ceeecccCccchhhhhHHHHHHhhhhhcc-ccccCCccccC
Q 024952 88 AYLLDRENTTRAKVLSNTIKQKRKEKAGK-WEVPLPKVRPV 127 (260)
Q Consensus 88 ~ylldr~~~~~ak~lsn~ikqkrkeka~k-~~vplpkv~~~ 127 (260)
.|.+||+-......|.+||..-.....|. =.+|||.|.+-
T Consensus 12 ~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~ 52 (96)
T d2c9wc1 12 EFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSH 52 (96)
T ss_dssp EEEEEHHHHTTSHHHHHC------------CEEECTTCCHH
T ss_pred EEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHH
Confidence 46777777777778888886544322222 24888887653
No 4
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.30 E-value=61 Score=19.74 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.0
Q ss_pred hhhhHHHHHHhhhhhccccccCCccccCcc
Q 024952 100 KVLSNTIKQKRKEKAGKWEVPLPKVRPVAE 129 (260)
Q Consensus 100 k~lsn~ikqkrkeka~k~~vplpkv~~~~e 129 (260)
+=|..+...-+.=..|.|++++|.+..-.|
T Consensus 5 ~Pl~~l~~~~~~ia~Gdl~~~i~~~~~~dE 34 (54)
T d2asxa1 5 RPIIELSNTADKIAEGNLEAEVPHQNRADE 34 (54)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCCTTTTCCSH
T ss_pred HHHHHHHHHHHHHHCCCCCCccCCCCCccH
Confidence 345566666667789999999998876544
No 5
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.23 E-value=61 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCCceee-c-c--cCccchhhhhHHHHHHhhhhhcc
Q 024952 84 GAVPAYLL-D-R--ENTTRAKVLSNTIKQKRKEKAGK 116 (260)
Q Consensus 84 ~a~p~yll-d-r--~~~~~ak~lsn~ikqkrkeka~k 116 (260)
...|++++ | + .+.-.+..|..+|.+.+++.+||
T Consensus 120 ~GTPt~~~~nG~~v~G~~~~e~l~~~i~~~~k~~~~k 156 (156)
T d1eeja1 120 SGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK 156 (156)
T ss_dssp CSSSEEECTTSCEEESCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCCEEEEeCCeEecCCCCHHHHHHHHHHHHHHhcCC
Confidence 35788666 5 4 24467899999999999999997
No 6
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.39 E-value=16 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=22.9
Q ss_pred ceeecccCccchhhhhHHHHHHhhhh---hccccccCCcccc
Q 024952 88 AYLLDRENTTRAKVLSNTIKQKRKEK---AGKWEVPLPKVRP 126 (260)
Q Consensus 88 ~ylldr~~~~~ak~lsn~ikqkrkek---a~k~~vplpkv~~ 126 (260)
.|-+||+-......|.|||..---+- +..--+|||.|.+
T Consensus 12 ~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s 53 (72)
T d1nexa2 12 RFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRS 53 (72)
T ss_dssp EEEEEHHHHTTSHHHHHTC-------------CEEECTTCCH
T ss_pred EEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCH
Confidence 36778888888888888887543221 1112389998875
No 7
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=13.39 E-value=28 Score=23.79 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=10.0
Q ss_pred eeeeeCCCCccC
Q 024952 152 KATFVGPGFTRK 163 (260)
Q Consensus 152 k~~fvg~~ftrk 163 (260)
|+.|+||+||--
T Consensus 10 kI~~~GDS~T~g 21 (248)
T d3bzwa1 10 KVGYIGDSITDP 21 (248)
T ss_dssp EEEEEESTTTCT
T ss_pred EEEEEehHHccC
Confidence 578999999953
No 8
>d1okja2 c.55.1.9 (A:107-216) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=13.33 E-value=11 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=11.3
Q ss_pred eeeCCCCccCCCCcccccccc
Q 024952 154 TFVGPGFTRKPPKYERFIRPS 174 (260)
Q Consensus 154 ~fvg~~ftrkppk~erfirp~ 174 (260)
+|||+|+.. |+.++...
T Consensus 54 ~~vG~g~~~----~~~~~~~~ 70 (110)
T d1okja2 54 VTVGTGWQA----WPDLGKES 70 (110)
T ss_dssp EEESHHHHH----CTTSSTTC
T ss_pred EEEecHHHH----HHHHHhhc
Confidence 999999854 44454443
No 9
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=10.52 E-value=40 Score=25.07 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.4
Q ss_pred cccceeeeeeCCCCccCCCCc
Q 024952 147 KRMVTKATFVGPGFTRKPPKY 167 (260)
Q Consensus 147 krmvtk~~fvg~~ftrkppk~ 167 (260)
.|.+|.+-||.+.||-+|=+|
T Consensus 51 q~FLtQpFfvae~fTg~~G~~ 71 (108)
T d1fx0b1 51 ERFLSQPFFVAEVFTGSPGKY 71 (108)
T ss_dssp HHHTCCCCSSCTTTSCSCCCC
T ss_pred HHHhccccccceecCCCCcCE
Confidence 678999999999999999887
No 10
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.43 E-value=29 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.595 Sum_probs=16.7
Q ss_pred cccCCccccCcchhhheeee
Q 024952 118 EVPLPKVRPVAEDEMFKVIR 137 (260)
Q Consensus 118 ~vplpkv~~~~e~e~fkv~~ 137 (260)
.+++|.|++++-+|+.+.++
T Consensus 4 ~~~vP~v~g~s~~~A~~~L~ 23 (61)
T d1pyya1 4 PYPMPSVKDISPGDLAEELR 23 (61)
T ss_dssp CCBCCCCSSCCHHHHHHHHH
T ss_pred cccCCcccCCCHHHHHHHHH
Confidence 58899999999999876554
Done!