BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024953
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 147/229 (64%), Gaps = 3/229 (1%)
Query: 31 DELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
D LKKI AYKAV E+V+S M +GLGTGST + ++RI LL+ GKL ++V IPTS T
Sbjct: 10 DSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTEL 69
Query: 90 QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
+A LGIPL+ L+ + +D+ IDG DE+D +NL+KGRGG+L+REK+V + ++I D
Sbjct: 70 KARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGD 129
Query: 150 ESKLVPH-LGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
ESKL + LG +G A+P+E++ + ++ + L ++ GC K+R + F+TDN NY
Sbjct: 130 ESKLCTNGLGMTG-AVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKNY 188
Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
++D + + I DL I GVV+HG+F++M +++ G +
Sbjct: 189 IVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVL 237
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Ribose-5-Phosphate
Length = 227
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 143/225 (63%), Gaps = 8/225 (3%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ KK AA+ A+ +V+ GMV+GLGTGSTA++AV + LR+G+L +VG+PTS+ T E
Sbjct: 6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A GIPL DL VDLAIDGADE+ P + L+KG GG+LLREK+VE K+F+VI D
Sbjct: 66 AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
+K VP LG +PVE+VP+ ++ T K + DL G +LR G++ + TD G+ +
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIA 178
Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
D IGD +L + GVVE G+F+ MAT +VA GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 150/232 (64%), Gaps = 12/232 (5%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ +E+KKIAA +A++F+E MV+GLGTGST + + +GE L++G++++IVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
A+ IP++ LD +D+A+DGADEVDP +NL+KGRG +L EK++E F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGEQPFVTDN 205
VDE KLV +L + +P+EV+P WK + L +F A+LR + P +TDN
Sbjct: 121 VDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS-IF---NAKAELRMGVNKDGPVITDN 175
Query: 206 GNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
GN++ID + D D+++ + I GV+E+G+F D+A VIV + GV
Sbjct: 176 GNFIIDAKFPRIDDPLDMEIELNTI---PGVIENGIFADIADIVIVGTREGV 224
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-phosphate Isomerase
pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Arabinose-5-Phosphate
Length = 227
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 141/225 (62%), Gaps = 8/225 (3%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ KK AA+ A+ +V+ G V+GLGTGSTA++AV + LR+G+L +VG+PTS+ T E
Sbjct: 6 ESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A GIPL DL VDLAIDGADE+ P + L+KG GG+LLREK+VE K+F+VI D
Sbjct: 66 AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
+K VP LG +PVE+VP+ ++ T K + DL G +LR G++ + TD G+ +
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRXDGDEFYFTDGGHLIA 178
Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
D IGD +L + GVVE G+F+ AT +VA GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLEIPGVVETGLFVGXATRALVAGPFGV 222
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 141/227 (62%), Gaps = 9/227 (3%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELK++ KAVE+++ GM++GLGTGST K+ VD +G+ + + L +IVG+ TS +T
Sbjct: 3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTA 61
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
EQA SLGI + D+D +DL IDGADE+ +KG G +LL EK+V K + IV
Sbjct: 62 EQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIV 121
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFV-TDNGN 207
DESK+V LG +PVEV+PY KR FE+ G + R + + TD+ N
Sbjct: 122 DESKMVDDLG--QFPLPVEVIPYGSGTVFKR----FEEKGLNPEFRKNEDGSLLHTDSDN 175
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 254
Y+IDL+L K I + K D ++ GVVEHG+FLD+ TVIV + G
Sbjct: 176 YIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDG 221
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 141/230 (61%), Gaps = 14/230 (6%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ELKKIA +A ++VE GM++GLGTGSTA + V+ +G +++ L ++G+ TS +T Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQ 60
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A +LGIPL +D VD+ +DGADEVDP N +KG GG+LL EK+V K ++ +VDE
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
SK+V LG +PVEVV Y A+RL FE G R FVTD N++I
Sbjct: 121 SKMVDTLG--AFRLPVEVVQYG----AERLFREFEKKGYKPSFREYDGVRFVTDMKNFII 174
Query: 211 DLYLKKDIGDL--KVASDNIL-RLAGVVEHGMFLDMATTVIVASELGVTI 257
DL D+G + +A N+L GVVEHG+F M VIVA + GV I
Sbjct: 175 DL----DLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 7/221 (3%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
+LKK+AA KA+EFVE M LG+G+GST + +GE + G + + TS+ + +
Sbjct: 26 QLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG--LRVTCVATSQYSEQLC 83
Query: 92 VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
G+P+S L+ P +DL IDGADE+ P M L+KG GG+LL EK+V A + VI DE+
Sbjct: 84 HKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADET 143
Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGEQPFVTDNGNYV 209
K+V LG A+P+EV P+ T ++ ++ G + LR G+ PF TD G+++
Sbjct: 144 KMVKTLG--AFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFI 201
Query: 210 IDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 250
D + + I K+ S+ +L + GVVEHG+FL +A+ IVA
Sbjct: 202 FDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVA 241
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|B Chain B, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|C Chain C, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|D Chain D, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
Length = 226
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 9/229 (3%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
++ ++LK A +AV+ V+ GMV+GLGTGSTA + +G +R+ +LT + GIPTS +
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELT-VFGIPTSFEA 59
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDP-FMNLVKGRGGSLLREKMVEGACKKFVV 146
A+ IPL LD Y VD+A DGADEV+ + L+KG GG +EK+V+ +FVV
Sbjct: 60 KMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 147 IVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNG 206
+VDESKLV L G +PVEV+P ++ + L ++ + V +L P +TDNG
Sbjct: 119 LVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALSEMGGE--AVIRLGDRKRGPVITDNG 175
Query: 207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
N +ID+++ +I D I + GVVE+G+F + V+V ++ GV
Sbjct: 176 NMIIDVFM--NIDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGV 221
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENQ|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENV|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENV|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
Length = 235
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 15/222 (6%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+TQDE+KK A + A+++VE G ++G+GTGST H +D +G + + K + +S +
Sbjct: 18 MTQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEEIKGA----VSSSVAS 73
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E+ +LGI + D + +D+ +DGADE++ ++KG G +L REK+V KF+ I
Sbjct: 74 TEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICI 133
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
VD +K V LG +PVEV+P + A++L L D C + +TDNGN
Sbjct: 134 VDGTKAVDVLG--TFPLPVEVIPMARSYVARQLVKLGGDP-CY-------REGVITDNGN 183
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 249
++D+Y K I + K D I + GVV G+F V++
Sbjct: 184 VILDVYGMK-ITNPKQLEDQINAIPGVVTVGLFAHRGADVVI 224
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|B Chain B, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|C Chain C, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|D Chain D, Crystal Structure Of Ribose-5-Isomerase A
pdb|4IO1|A Chain A, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
pdb|4IO1|B Chain B, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
Length = 224
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 26/230 (11%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELKK+AA +A + + + + LG+GTGST ++ + + + K+ +V +S+ +
Sbjct: 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEEL--VNYRDKIKTVVS--SSEDST 63
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
+ +LG + DL+ +DL IDGADE + L+KG G +L REK+ A KKF+ I+
Sbjct: 64 RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPF-----VT 203
DESK V LG +P+EV+P + A+++ L G QP +T
Sbjct: 124 DESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL-------------GGQPVYREQTIT 168
Query: 204 DNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASE 252
DNGN ++D+Y K LK+ ++ + ++ GVV +G+F L A TVI+A++
Sbjct: 169 DNGNVILDVYNLKIDNPLKLETE-LNQITGVVTNGIFALKPADTVIMATK 217
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 11/234 (4%)
Query: 31 DELKKIAAYKAVE---FVESGMVLGLGTGSTAKHAVDRIGELLRQGKL----TNIVGIPT 83
++ K+ AAY+AV+ + ++G+G+GST + +RIG+ L K + + IPT
Sbjct: 19 EDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPT 78
Query: 84 SKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKK 143
++ + + L ++ YP +D+A DGADEVD + L+KG G L +EK+V + K
Sbjct: 79 GFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKT 138
Query: 144 FVVIVDESKLVP-HLGGSGL-AMPVEVVPYCW-KFTAKRLQDLFEDCGCVAKLRTTGEQP 200
F+V+ D K P HLG + +P+E+VP + + L+ L + + + + P
Sbjct: 139 FIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGP 198
Query: 201 FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 254
VTDN N++ID +I D + I L GVVE G+F+D A+ + G
Sbjct: 199 VVTDNNNFIIDADF-GEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDG 251
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+TQDELKK + A+++V+ G ++G+GTGSTA H +D +G +G++ V +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAS 56
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E+ SLGI + DL+ + + +DGADE++ +KG G +L REK++ +KF+ I
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
D SK V LG +PVEV+P A++L L R Q VTDNGN
Sbjct: 117 ADASKQVDILG--KFPLPVEVIPXARSAVARQLVKLGG--------RPEYRQGVVTDNGN 166
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTV 247
++D++ +I D + I + GVV G+F + V
Sbjct: 167 VILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADV 205
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 15/219 (6%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
TQDELKK + A+++V+ G ++G+GTGSTA H +D +G +G++ V +S +
Sbjct: 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTX--KGQIEGAV--SSSDAST 57
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E+ SLGI + DL+ + + +DGADE++ +KG G +L REK++ +KF+ I
Sbjct: 58 EKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIA 117
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
D SK V LG +PVEV+P A++L L G + R Q VTDNGN
Sbjct: 118 DASKQVDILG--KFPLPVEVIPXARSAVARQLVKL----GGRPEYR----QGVVTDNGNV 167
Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTV 247
++D++ +I D + I + GVV G+F + V
Sbjct: 168 ILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADV 205
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 15/231 (6%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ Q E+KK+AA A+++V++ ++G+G+GST ++ +G + + K+ V SK++
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVA--ASKES 56
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E GI + + + +D+ +DGADE++P ++KG G +L REK+V KKF+ I
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
VD SK V L GS +PVEV+P ++L L G + R + VTDNGN
Sbjct: 117 VDSSKQVDVL-GSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYR----EGVVTDNGN 167
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASELGVTI 257
++D++ + +++ + + +AGVV +G+F L A VIV + G +
Sbjct: 168 VILDVHNFSILNPVEIEKE-LNNVAGVVTNGIFALRGADVVIVGTPEGAKV 217
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 18/240 (7%)
Query: 26 VILTQDELKKIAAYKAVEFVE----SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGI 81
+++TQDELK++ A +V G V+G+GTGSTA +D + + + + +
Sbjct: 7 LLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKDRYRGA----V 62
Query: 82 PTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC 141
+S T E+ S GI + DL+ + + +DGADE+D ++KG GG+L REK+V
Sbjct: 63 SSSVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVA 122
Query: 142 KKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QP 200
+ FV I D SK V LG +PVEVVP +RL L G V LR + P
Sbjct: 123 ETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRLAAL----GGVPVLRVKQDGTP 176
Query: 201 FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGV-TIR 258
+VTDNGN ++D+ + I D + I GVV G+F A ++ +E GV T+R
Sbjct: 177 YVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVETLR 235
>pdb|4HE8|H Chain H, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|H Chain H, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|Q Chain Q, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 365
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKF 175
+++ + S L+P L G MPV VPY W F
Sbjct: 248 EYIHFITASALIPTLFLGGWTMPVLEVPYLWMF 280
>pdb|2EX5|A Chain A, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
pdb|2EX5|B Chain B, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
Length = 207
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
Y+IDL I +++V S++ L LAG +E L+++T + S+ G+ +
Sbjct: 32 YLIDLRKLFQIDEVQVTSESKLFLAGFLEGEASLNISTKKLATSKFGLVV 81
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 42 VEFVESGMVLGL--GTGSTAKHAVDRIGELLRQG 73
V+FV + +VL TGS +H +D+ LLRQG
Sbjct: 844 VKFVPNILVLDYLYATGSKEQHLIDKATNLLRQG 877
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 105 PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD--ESKLVPHLGGSGL 162
PV ++ D D F N+V+ RGG L+++ A V IVD S + P G
Sbjct: 242 PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWF 301
Query: 163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGD 220
+ V +T + ED R+ G+ FV D + D YL K I
Sbjct: 302 STGV--------YTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKD---VIFDDYLSKKI-- 348
Query: 221 LKVASDNILRLAGVVEH 237
K + D +L V H
Sbjct: 349 -KKSEDELLAEKKCVAH 364
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRI--GELLRQGKL 75
A K V + G V GLG G+ A A+ R+ GE++R G++
Sbjct: 243 ALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQM 282
>pdb|2L42|A Chain A, The Solution Structure Of Rap1 Brct Domain From
Saccharomyces Cerevisiae
Length = 106
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 95 GIPLSDLDSYPVVDL-AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVV 146
G PLS++ Y D A D +++D L++ GG +L K E F+V
Sbjct: 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIV 61
>pdb|3BRS|A Chain A, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
pdb|3BRS|B Chain B, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
Length = 289
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 209 VIDLYLKKDIGDLKVASDNI---LRLAGVVEH 237
VID +K+DI D+ VA+DNI +R+ V ++
Sbjct: 95 VIDSGMKQDIADITVATDNIQAGIRIGAVTKN 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,095,150
Number of Sequences: 62578
Number of extensions: 295680
Number of successful extensions: 778
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 31
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)