Query 024953
Match_columns 260
No_of_seqs 287 out of 1836
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02384 ribose-5-phosphate is 100.0 2.5E-65 5.4E-70 458.0 28.8 256 1-260 1-264 (264)
2 PRK13978 ribose-5-phosphate is 100.0 5E-65 1.1E-69 449.0 27.0 227 27-260 1-228 (228)
3 COG0120 RpiA Ribose 5-phosphat 100.0 1.1E-63 2.4E-68 437.0 24.7 223 29-260 2-227 (227)
4 PRK00702 ribose-5-phosphate is 100.0 6.7E-63 1.4E-67 435.3 25.5 217 30-257 3-219 (220)
5 TIGR00021 rpiA ribose 5-phosph 100.0 5.4E-62 1.2E-66 428.9 25.3 215 34-255 2-217 (218)
6 cd01398 RPI_A RPI_A: Ribose 5- 100.0 6.6E-60 1.4E-64 414.8 24.9 211 33-251 1-213 (213)
7 PF06026 Rib_5-P_isom_A: Ribos 100.0 1.8E-52 3.9E-57 356.1 16.4 173 78-256 1-173 (173)
8 KOG3075 Ribose 5-phosphate iso 100.0 1.5E-51 3.2E-56 363.0 22.0 234 25-260 19-258 (261)
9 PF00455 DeoRC: DeoR C termina 99.9 6.7E-26 1.4E-30 191.1 11.8 120 30-156 2-142 (161)
10 PRK10906 DNA-binding transcrip 99.9 4.1E-24 8.9E-29 192.3 12.5 122 28-156 72-214 (252)
11 PRK10681 DNA-binding transcrip 99.9 3.8E-24 8.2E-29 192.3 10.9 121 28-155 73-214 (252)
12 PRK13509 transcriptional repre 99.9 9.1E-24 2E-28 189.8 12.8 120 29-156 75-213 (251)
13 PRK09802 DNA-binding transcrip 99.9 9.9E-24 2.1E-28 191.4 12.5 121 29-156 88-229 (269)
14 PRK10434 srlR DNA-bindng trans 99.9 2E-23 4.4E-28 188.1 13.7 120 29-156 73-214 (256)
15 PRK10411 DNA-binding transcrip 99.9 2.5E-23 5.4E-28 185.9 12.3 119 29-155 75-214 (240)
16 COG1349 GlpR Transcriptional r 99.9 3.6E-23 7.9E-28 186.2 13.1 122 28-156 72-214 (253)
17 PRK08335 translation initiatio 98.3 1.5E-05 3.2E-10 73.0 13.3 130 32-169 94-237 (275)
18 COG1184 GCD2 Translation initi 98.3 9E-06 1.9E-10 75.0 11.5 121 30-156 102-236 (301)
19 TIGR00524 eIF-2B_rel eIF-2B al 98.2 2E-05 4.4E-10 73.0 13.4 131 33-170 104-259 (303)
20 PRK08535 translation initiatio 98.2 1.5E-05 3.3E-10 74.0 12.4 131 32-169 105-249 (310)
21 TIGR00511 ribulose_e2b2 ribose 98.2 1.6E-05 3.5E-10 73.6 12.5 135 31-170 99-245 (301)
22 TIGR00512 salvage_mtnA S-methy 98.1 6.6E-05 1.4E-09 70.5 13.6 132 32-170 127-287 (331)
23 PRK05720 mtnA methylthioribose 98.0 0.00014 3.1E-09 68.6 13.5 131 33-170 132-287 (344)
24 COG2057 AtoA Acyl CoA:acetate/ 97.9 5E-05 1.1E-09 67.2 8.2 110 32-154 6-152 (225)
25 PF01008 IF-2B: Initiation fac 97.9 0.00011 2.4E-09 66.8 10.2 123 30-156 90-225 (282)
26 KOG1466 Translation initiation 97.8 0.00015 3.2E-09 65.6 10.1 135 33-174 116-265 (313)
27 PRK05772 translation initiatio 97.8 0.00036 7.8E-09 66.3 12.9 130 32-169 151-306 (363)
28 PRK06371 translation initiatio 97.6 0.0011 2.4E-08 62.2 13.3 128 35-169 124-276 (329)
29 PRK06036 translation initiatio 97.5 0.0019 4.1E-08 60.9 13.4 128 33-169 133-285 (339)
30 PRK08334 translation initiatio 97.3 0.0042 9.1E-08 58.9 12.7 130 32-169 145-299 (356)
31 PRK06372 translation initiatio 97.2 0.0037 8.1E-08 56.7 10.9 116 33-156 73-200 (253)
32 TIGR02428 pcaJ_scoB_fam 3-oxoa 97.0 0.0029 6.4E-08 55.6 8.0 108 34-152 3-145 (207)
33 PRK09920 acetyl-CoA:acetoacety 96.6 0.01 2.3E-07 52.7 8.3 47 34-84 4-53 (219)
34 TIGR02429 pcaI_scoA_fam 3-oxoa 96.4 0.026 5.7E-07 50.2 9.5 51 103-156 148-198 (222)
35 TIGR03458 YgfH_subfam succinat 96.0 0.084 1.8E-06 52.2 11.8 111 38-151 5-159 (485)
36 COG1788 AtoD Acyl CoA:acetate/ 96.0 0.048 1E-06 48.4 9.1 112 34-150 4-191 (220)
37 PF04198 Sugar-bind: Putative 95.8 0.0098 2.1E-07 53.7 4.0 55 23-82 25-83 (255)
38 KOG1465 Translation initiation 95.7 0.087 1.9E-06 48.9 9.5 117 34-156 149-279 (353)
39 COG2390 DeoR Transcriptional r 95.5 0.027 5.8E-07 52.8 5.7 63 16-82 79-145 (321)
40 KOG1467 Translation initiation 95.2 0.13 2.7E-06 50.6 9.4 118 35-157 347-477 (556)
41 cd00458 SugarP_isomerase Sugar 94.8 0.094 2E-06 44.3 6.7 49 37-85 8-58 (169)
42 TIGR01584 citF citrate lyase, 94.6 0.3 6.5E-06 48.2 10.3 104 44-151 39-189 (492)
43 COG0182 Predicted translation 93.9 0.69 1.5E-05 43.5 10.6 129 34-170 136-290 (346)
44 PF02550 AcetylCoA_hydro: Acet 93.5 0.57 1.2E-05 40.5 9.0 116 33-150 7-166 (198)
45 PF04223 CitF: Citrate lyase, 92.3 0.7 1.5E-05 44.9 8.3 99 44-150 16-165 (466)
46 COG0427 ACH1 Acetyl-CoA hydrol 91.9 0.81 1.8E-05 45.2 8.4 121 27-150 6-171 (501)
47 PRK15418 transcriptional regul 91.5 0.25 5.4E-06 46.2 4.3 48 32-82 96-147 (318)
48 COG3051 CitF Citrate lyase, al 88.5 1.5 3.3E-05 42.0 6.9 102 45-150 62-210 (513)
49 PF03927 NapD: NapD protein; 87.1 0.98 2.1E-05 33.7 3.9 69 163-243 7-75 (79)
50 PF04223 CitF: Citrate lyase, 85.3 4.5 9.7E-05 39.5 8.3 43 30-72 205-253 (466)
51 PF01037 AsnC_trans_reg: AsnC 83.2 2.5 5.5E-05 29.7 4.5 61 166-237 3-66 (74)
52 TIGR01110 mdcA malonate decarb 81.1 13 0.00028 37.3 9.9 90 37-127 30-158 (543)
53 TIGR01584 citF citrate lyase, 81.1 2.7 5.9E-05 41.6 5.1 40 32-71 230-275 (492)
54 PF01144 CoA_trans: Coenzyme A 80.4 3.4 7.4E-05 35.9 5.1 32 37-69 4-39 (217)
55 COG4670 Acyl CoA:acetate/3-ket 77.2 18 0.00039 36.0 9.3 49 34-82 4-56 (527)
56 PRK10553 assembly protein for 77.1 6.9 0.00015 29.8 5.2 69 163-243 9-78 (87)
57 TIGR03458 YgfH_subfam succinat 71.8 8.8 0.00019 38.1 5.9 50 18-69 211-270 (485)
58 PRK11179 DNA-binding transcrip 69.1 10 0.00022 31.3 4.9 81 144-238 56-138 (153)
59 COG0373 HemA Glutamyl-tRNA red 68.5 54 0.0012 32.0 10.3 80 36-119 167-251 (414)
60 PF13291 ACT_4: ACT domain; PD 65.4 12 0.00026 27.0 4.1 71 162-237 5-78 (80)
61 PF02254 TrkA_N: TrkA-N domain 63.9 22 0.00047 27.1 5.6 46 50-100 1-46 (116)
62 COG1102 Cmk Cytidylate kinase 60.9 2.7 5.8E-05 36.1 -0.1 52 54-113 10-65 (179)
63 cd01399 GlcN6P_deaminase GlcN6 57.6 12 0.00025 32.5 3.4 35 35-69 5-41 (232)
64 PRK11169 leucine-responsive tr 54.8 33 0.00071 28.6 5.5 84 143-240 60-147 (164)
65 PF08679 DsrD: Dissimilatory s 54.5 2.6 5.7E-05 30.6 -1.0 28 34-61 33-61 (67)
66 KOG2828 Acetyl-CoA hydrolase [ 53.9 22 0.00047 34.5 4.6 111 38-150 29-173 (454)
67 COG3051 CitF Citrate lyase, al 53.6 56 0.0012 31.7 7.3 89 34-122 254-382 (513)
68 PF07021 MetW: Methionine bios 53.6 72 0.0016 27.9 7.5 67 41-113 7-82 (193)
69 COG2230 Cfa Cyclopropane fatty 53.0 46 0.001 30.8 6.6 40 44-91 69-111 (283)
70 COG0802 Predicted ATPase or ki 52.6 35 0.00075 28.7 5.2 78 29-118 6-88 (149)
71 PRK00443 nagB glucosamine-6-ph 52.3 22 0.00047 31.6 4.3 22 47-68 33-54 (261)
72 PF01488 Shikimate_DH: Shikima 51.2 38 0.00081 27.2 5.2 75 37-115 2-84 (135)
73 cd00423 Pterin_binding Pterin 49.1 67 0.0015 28.8 7.0 60 35-98 24-99 (258)
74 PF02492 cobW: CobW/HypB/UreG, 45.8 47 0.001 27.7 5.2 94 52-154 8-127 (178)
75 PRK10646 ADP-binding protein; 45.7 51 0.0011 27.7 5.2 38 30-69 10-51 (153)
76 PF02367 UPF0079: Uncharacteri 40.4 34 0.00073 27.6 3.2 33 35-69 2-38 (123)
77 TIGR01110 mdcA malonate decarb 40.4 59 0.0013 32.8 5.5 38 32-69 223-263 (543)
78 PF02353 CMAS: Mycolic acid cy 36.4 1.3E+02 0.0028 27.4 6.8 40 44-91 59-101 (273)
79 PRK09189 uroporphyrinogen-III 36.3 76 0.0017 27.7 5.2 47 49-95 172-218 (240)
80 PF00070 Pyr_redox: Pyridine n 35.0 58 0.0012 23.2 3.5 31 50-85 2-32 (80)
81 COG2450 Uncharacterized conser 34.7 80 0.0017 25.7 4.5 55 141-209 62-116 (124)
82 PRK05752 uroporphyrinogen-III 34.4 68 0.0015 28.4 4.6 50 48-99 183-232 (255)
83 cd04888 ACT_PheB-BS C-terminal 33.5 1.5E+02 0.0033 20.4 5.5 59 170-238 11-73 (76)
84 PRK07239 bifunctional uroporph 33.3 75 0.0016 29.9 4.9 56 43-98 195-257 (381)
85 PF02824 TGS: TGS domain; Int 32.7 38 0.00082 23.5 2.1 26 45-70 5-30 (60)
86 PF02602 HEM4: Uroporphyrinoge 31.0 51 0.0011 28.2 3.1 53 46-100 167-219 (231)
87 PRK08811 uroporphyrinogen-III 30.1 66 0.0014 29.1 3.8 52 47-99 190-241 (266)
88 PRK05928 hemD uroporphyrinogen 28.8 82 0.0018 27.0 4.1 56 46-101 176-231 (249)
89 PRK10669 putative cation:proto 28.7 1.4E+02 0.0031 29.7 6.3 49 47-100 417-465 (558)
90 TIGR00284 dihydropteroate synt 28.6 2.1E+02 0.0046 28.6 7.3 62 35-100 165-233 (499)
91 PF05991 NYN_YacP: YacP-like N 28.3 1.7E+02 0.0037 24.5 5.8 50 50-100 70-119 (166)
92 COG0329 DapA Dihydrodipicolina 27.8 1.3E+02 0.0027 27.8 5.3 55 31-85 56-110 (299)
93 cd05213 NAD_bind_Glutamyl_tRNA 26.6 5E+02 0.011 23.8 9.6 66 46-115 177-247 (311)
94 PRK11613 folP dihydropteroate 26.6 2.5E+02 0.0054 25.9 6.9 61 35-99 38-114 (282)
95 cd04879 ACT_3PGDH-like ACT_3PG 25.6 2E+02 0.0043 18.8 5.7 59 170-238 10-69 (71)
96 cd00739 DHPS DHPS subgroup of 25.2 3E+02 0.0065 24.8 7.1 61 35-99 24-100 (257)
97 PF02558 ApbA: Ketopantoate re 24.0 2.1E+02 0.0045 22.6 5.4 46 51-102 2-47 (151)
98 PRK13512 coenzyme A disulfide 23.8 4.1E+02 0.0089 25.4 8.3 35 46-85 147-181 (438)
99 cd00954 NAL N-Acetylneuraminic 23.7 2.2E+02 0.0048 25.8 6.1 29 31-59 53-81 (288)
100 PRK04998 hypothetical protein; 23.5 3.2E+02 0.0069 20.4 6.1 69 162-235 12-85 (88)
101 cd04877 ACT_TyrR N-terminal AC 23.4 2E+02 0.0043 20.2 4.6 19 219-237 49-67 (74)
102 PRK03562 glutathione-regulated 23.2 3.1E+02 0.0067 28.0 7.6 49 47-100 400-448 (621)
103 cd00408 DHDPS-like Dihydrodipi 22.1 2E+02 0.0043 25.7 5.4 54 31-84 49-102 (281)
104 PF14903 WG_beta_rep: WG conta 21.7 98 0.0021 18.2 2.3 16 201-216 3-18 (35)
105 PRK05948 precorrin-2 methyltra 21.2 5.2E+02 0.011 23.0 7.8 63 36-101 80-148 (238)
106 COG2242 CobL Precorrin-6B meth 21.0 3.9E+02 0.0085 23.2 6.7 73 34-113 19-109 (187)
107 COG3140 Uncharacterized protei 20.8 38 0.00082 23.8 0.3 32 39-70 14-45 (60)
108 TIGR00150 HI0065_YjeE ATPase, 20.7 1.8E+02 0.0039 23.7 4.3 36 32-69 6-45 (133)
109 TIGR00273 iron-sulfur cluster- 20.6 2.1E+02 0.0046 28.0 5.6 50 105-158 180-232 (432)
110 cd00950 DHDPS Dihydrodipicolin 20.6 2.2E+02 0.0049 25.4 5.4 55 30-84 51-105 (284)
111 PRK15367 type III secretion sy 20.0 2.8E+02 0.0061 27.0 6.1 56 173-236 199-255 (395)
No 1
>PLN02384 ribose-5-phosphate isomerase
Probab=100.00 E-value=2.5e-65 Score=457.95 Aligned_cols=256 Identities=87% Similarity=1.275 Sum_probs=227.4
Q ss_pred Ccee----ecccCCCccccC--CCCCCCCCCCCCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCC
Q 024953 1 MAIA----ISAEKPSSVETG--LSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGK 74 (260)
Q Consensus 1 ~~~~----~~~~~~~~~~~~--~~~~~~~~~~m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~ 74 (260)
|||| |..||.| .|.| |||.||.|. +++++|+++|++|++||++||+||||||||+.+++++|+++.+++.
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~m---~~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~ 76 (264)
T PLN02384 1 MAIAYPPFIGSEKDS-MEVGSMLSPSSPVIL---TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGK 76 (264)
T ss_pred CCCCCCccccccccc-hhhcCcCCCCCCCCC---CHHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhcc
Confidence 5665 3445543 4444 777776654 3566899999999999999999999999999999999998876565
Q ss_pred CCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc
Q 024953 75 LTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV 154 (260)
Q Consensus 75 l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~ 154 (260)
++++++|++|.+++.+|++.|+++..+.+..++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+||++
T Consensus 77 l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V 156 (264)
T PLN02384 77 LKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLV 156 (264)
T ss_pred ccceEEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCccee
Confidence 65699999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCC
Q 024953 155 PHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLA 232 (260)
Q Consensus 155 ~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~ 232 (260)
++||..+|||||||+|++|.++.++|+++|...|+.+++|++ +++|++|||||||+||+|+.++.||.+++..|++||
T Consensus 157 ~~Lg~~~~plPVEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~~~g~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ip 236 (264)
T PLN02384 157 KHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLA 236 (264)
T ss_pred cccCCCCCCEEEEECccHHHHHHHHHHHHhhccCCceEEeccCCCCCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCCC
Confidence 999852379999999999999999999986655788999986 347999999999999999844999999999999999
Q ss_pred cEEeeccccccccEEEEEcCCCeEEecC
Q 024953 233 GVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 233 GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
||||||||.++++.|++|+++|+++-.|
T Consensus 237 GVVE~GLF~~~a~~vivg~~~Gv~~~~~ 264 (264)
T PLN02384 237 GVVEHGMFLDMATTVIVAGELGVTIKDK 264 (264)
T ss_pred cEeccCcccCcCCEEEEEcCCceEEeCC
Confidence 9999999999999999999999876543
No 2
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=5e-65 Score=448.98 Aligned_cols=227 Identities=38% Similarity=0.630 Sum_probs=213.9
Q ss_pred CCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953 27 ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPV 106 (260)
Q Consensus 27 m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~ 106 (260)
||++++.|+++|++|++||++||+||||||||+.+++++|+++.+.+.+ ++++|++|..++.+|+++|+++..+.+..+
T Consensus 1 ~m~~~~~K~~aa~~A~~~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l-~i~~VptS~~t~~~a~~~Gipl~~l~~~~~ 79 (228)
T PRK13978 1 MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDVDH 79 (228)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCEEEeCchHHHHHHHHHHHHHhhccCc-cEEEEeCcHHHHHHHHHcCCcEechhhCCc
Confidence 5677788999999999999999999999999999999999988765666 799999999999999999999999988889
Q ss_pred ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953 107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (260)
Q Consensus 107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~ 186 (260)
+|+||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++||.+ |||||||+||+|+++.++|+++
T Consensus 80 iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~sK~v~~Lg~~-~plPVEV~p~~~~~v~~~l~~l--- 155 (228)
T PRK13978 80 IDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESY--- 155 (228)
T ss_pred eeEEEecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeCcceecccCCC-CCeEEEEcccHHHHHHHHHHHc---
Confidence 999999999999999999999999999999999999999999999999999963 9999999999999999999996
Q ss_pred CCC-ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953 187 CGC-VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 187 ~g~-~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
|+ .+.+|+++++||+|||||||+||+|+. +.||++++..|++||||||||||.++++.+++|+++|+++++|
T Consensus 156 -g~~~~~~R~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~L~~ipGVVe~GlF~~~~~~viv~~~~G~~~~~~ 228 (228)
T PRK13978 156 -ADIKVERRVNEDVAFITDNGNYILDCKLPK-GIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228 (228)
T ss_pred -CCCCcEEEecCCCceECCCCcEEEEecCCC-cCCHHHHHHHHhcCCcEeeeCCccCcCCEEEEEcCCceEEeCC
Confidence 64 788887778899999999999999996 8999999999999999999999999999999999999988875
No 3
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=437.05 Aligned_cols=223 Identities=49% Similarity=0.777 Sum_probs=206.7
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D 108 (260)
.++++|+..|++|+++|++||+||||||||+.+|+++|+++.+.+ + +++.||+|.+++.+|++.|+++.+++...++|
T Consensus 2 ~~~~~K~~aa~~A~~~v~~gmviGlGTGST~~~fI~~Lg~~~~~e-~-~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lD 79 (227)
T COG0120 2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGE-L-DIGGVPTSFQTEELARELGIPVSSLNEVDSLD 79 (227)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHhhccC-c-cEEEEeCCHHHHHHHHHcCCeecCccccCccc
Confidence 466789999999999999999999999999999999999754323 4 79999999999999999999999998877899
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG 188 (260)
Q Consensus 109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g 188 (260)
+||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++|| +|||||||+|++|.+|.++++++ |
T Consensus 80 l~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG--~fplPVEVip~a~~~v~r~l~~~----g 153 (227)
T COG0120 80 LAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG--KFPLPVEVIPFARSAVLRKLEKL----G 153 (227)
T ss_pred eEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC--CCCcCEEEchhHHHHHHHHHHHh----C
Confidence 99999999999999999999999999999999999999999999999999 59999999999999999999986 9
Q ss_pred CceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEecC
Q 024953 189 CVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK 260 (260)
Q Consensus 189 ~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~~~ 260 (260)
+++.||++ ++||+||||||||+||+|+. +.||.+|+++|++||||||||||.++++.++++..+| ++++++
T Consensus 154 ~~~~lR~~~~k~GpviTDnGN~IlDv~~~~-i~dp~~le~~l~~IpGVVE~GlF~~~~~~~ii~g~~~~v~~~~~ 227 (227)
T COG0120 154 GKPTLREGEGKDGPVITDNGNYILDVHFGR-IEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227 (227)
T ss_pred CCccccccccCCCCEEeeCCCEEEEecCCC-cCCHHHHHHHHhCCCCEEEecccccccccEEEEeCCCCEEEecC
Confidence 99999963 77899999999999999996 9999999999999999999999999887666666665 888764
No 4
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=6.7e-63 Score=435.33 Aligned_cols=217 Identities=49% Similarity=0.796 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccE
Q 024953 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDL 109 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~ 109 (260)
++++|++||++|+++|++||+||||+|||+.+++++|+++.+.+ + ++++||||..++.++...|++++.+.+..++|+
T Consensus 3 ~~~~K~~IA~~Aa~lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iD~ 80 (220)
T PRK00702 3 QDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEG-L-IIGGVPTSEASTELAKELGIPLFDLNEVDSLDL 80 (220)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhhccC-C-CEEEECCcHHHHHHHHhCCCeEEcHHHCCccCE
Confidence 56789999999999999999999999999999999998753222 3 699999999999999888999999976559999
Q ss_pred EEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCC
Q 024953 110 AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC 189 (260)
Q Consensus 110 af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~ 189 (260)
||+|||+||+++++++++++|++|||+++++|+++|+|+|+|||+++|| +||+||||+|++|+++.++|+++ |+
T Consensus 81 afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~~vil~D~sK~v~~lg--~~~lPvEV~p~~~~~v~~~l~~~----g~ 154 (220)
T PRK00702 81 YVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVDESKLVDVLG--KFPLPVEVIPFARSAVARELEKL----GG 154 (220)
T ss_pred EEECCCeECCCCCcEECcHHHHHHHHHHHHhcCcEEEEEEcchhhhhcC--CCCccEEECccHHHHHHHHHHHh----CC
Confidence 9999999999999999999999999999999999999999999999999 49999999999999999999996 88
Q ss_pred ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEE
Q 024953 190 VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257 (260)
Q Consensus 190 ~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~ 257 (260)
.++||++ +||+|||||||+||+|+. +.||.+++.+|++||||||||||.++++.|++|+++|+++
T Consensus 155 ~~~~R~~--~p~vTd~Gn~IiD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~~~v~~~~~~g~~~ 219 (220)
T PRK00702 155 QPELRMD--EPVVTDNGNYILDVHFGR-IPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDGVKT 219 (220)
T ss_pred cceEeCC--CCEECCCCCEEEEecCCC-cCCHHHHHHHhcCCCcEeeeccCccCCCEEEEEcCCcEEe
Confidence 9999986 799999999999999995 9999999999999999999999999999999999999765
No 5
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=100.00 E-value=5.4e-62 Score=428.86 Aligned_cols=215 Identities=54% Similarity=0.858 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEc
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDG 113 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~G 113 (260)
|++||++|+++|++||+||||+|||+.+++++|+++.+++.+ ++++||||+.++.+|.+.|++++.+....++|+||+|
T Consensus 2 K~~IA~~A~~~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafdG 80 (218)
T TIGR00021 2 KRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSSLDEVPELDLAIDG 80 (218)
T ss_pred HHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhccCC-CEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEEC
Confidence 899999999999999999999999999999999876434455 7999999999999998889999999775699999999
Q ss_pred cCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEE
Q 024953 114 ADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL 193 (260)
Q Consensus 114 adgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~ 193 (260)
||+||++++++++++++++|||+++++|+++|+|+|+|||+++|| ++||||||.|++|.++.++|+++ |+++++
T Consensus 81 aD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg--~~plPvEV~p~~~~~v~~~l~~~----g~~~~~ 154 (218)
T TIGR00021 81 ADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKLG--KFPLPVEVVPFAWKAVARKLEKL----GGEPTL 154 (218)
T ss_pred CCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhcccC--CCCccEEECccHHHHHHHHHHHc----CCCcEE
Confidence 999999999999999999999999989999999999999999999 49999999999999999999996 889999
Q ss_pred eec-CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCe
Q 024953 194 RTT-GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255 (260)
Q Consensus 194 R~~-~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~ 255 (260)
|++ +++|++|||||||+|++|..++.||.+++++|++||||||||||.++++.+++|+++|+
T Consensus 155 R~~~~~~p~vTdnGN~IiD~~~~~~~~d~~~l~~~l~~i~GVve~GlF~~~~~~v~~~~~~g~ 217 (218)
T TIGR00021 155 RQGNKGGPVVTDNGNYILDCHFGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDGV 217 (218)
T ss_pred eecCCCCcEECCCCCEEEEeeCCCCCCCHHHHHHHHhcCCCEEEeeeecCCCCEEEEEeCCCc
Confidence 985 67899999999999999985489999999999999999999999999999999999984
No 6
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=6.6e-60 Score=414.83 Aligned_cols=211 Identities=55% Similarity=0.882 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEE
Q 024953 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAID 112 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~ 112 (260)
.|++||++|+++|++||+||||+|||+.+++++|+++.+.+. .++|+||||+.++.++.+.+++++.+++.+++|+||+
T Consensus 1 ~K~~IA~~A~~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~-~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~ 79 (213)
T cd01398 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEG-LNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAID 79 (213)
T ss_pred CHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHhhhccC-CCEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEE
Confidence 389999999999999999999999999999999987532222 2799999999999988778999999998899999999
Q ss_pred ccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceE
Q 024953 113 GADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK 192 (260)
Q Consensus 113 GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~ 192 (260)
|||++|++++++++.+++++|||+++++|+++|+|+|||||+++|| ++||||||.|++|.++.++|+++ |+.++
T Consensus 80 Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~--~~~lPvEV~p~~~~~v~~~l~~~----g~~~~ 153 (213)
T cd01398 80 GADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLG--EFPLPVEVVPFAWSYVARELEKL----GGKPV 153 (213)
T ss_pred CCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCC--CCCeeEEEChhhHHHHHHHHHHc----CCCcE
Confidence 9999999888899999999999999888999999999999999999 39999999999999999999997 99999
Q ss_pred Eeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEc
Q 024953 193 LRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVAS 251 (260)
Q Consensus 193 ~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~ 251 (260)
||++ +++|++|||||||+||+|+. +.||.+++++|++||||||||||.++++.|++|+
T Consensus 154 ~R~~~~~~~p~~Td~gn~i~D~~~~~-~~~~~~l~~~l~~i~GVve~GlF~~~~~~v~~~~ 213 (213)
T cd01398 154 LREGSGKGGPVVTDNGNYILDVHFGT-IEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213 (213)
T ss_pred EcccCCCCCcEECCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeCCCcCCCCEEEEeC
Confidence 9986 47899999999999999996 8999999999999999999999999999999984
No 7
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=100.00 E-value=1.8e-52 Score=356.12 Aligned_cols=173 Identities=54% Similarity=0.877 Sum_probs=151.2
Q ss_pred EEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCC
Q 024953 78 IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHL 157 (260)
Q Consensus 78 itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~l 157 (260)
|++|++|..++.++++.|+++..+.+..++|++|||||+||.+++++||+|+|++|||+++++|+++|+++|++|++++|
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 58899999999999999999999988789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEee
Q 024953 158 GGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEH 237 (260)
Q Consensus 158 g~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~ 237 (260)
| ++||||||+|++|..|.++|+++ +|+.++||+++++|++|||||||+||+|+. +.||++++++|++|||||||
T Consensus 81 g--~~plPvEV~p~a~~~v~~~l~~~---~G~~~~lR~~~~~p~vTDnGN~IlD~~f~~-i~d~~~l~~~L~~i~GVVe~ 154 (173)
T PF06026_consen 81 G--KFPLPVEVVPFAWSYVLRRLKEL---LGGKPVLRMASGGPFVTDNGNYILDVHFGP-IDDPEELERELKSIPGVVET 154 (173)
T ss_dssp T--SS-EEEEE-GGGHHHHHHHHHHT---TT-EEEE-EETTEE-B-TTS-EEEEEESSS-BSSHHHHHHHHHTSTTEEEE
T ss_pred C--CCceeEEEcHHHHHHHHHHHHHh---cCCCceEccCCCCCEEeCCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeE
Confidence 9 49999999999999999999993 399999999877999999999999999995 99999999999999999999
Q ss_pred ccccccccEEEEEcCCCeE
Q 024953 238 GMFLDMATTVIVASELGVT 256 (260)
Q Consensus 238 GlF~~~~~~viv~~~~g~~ 256 (260)
|||.++++.+++|+++|++
T Consensus 155 GlF~~~~~~viv~~~~G~~ 173 (173)
T PF06026_consen 155 GLFLGMADKVIVGGEDGVK 173 (173)
T ss_dssp SEE-SS-SEEEEEETTEEE
T ss_pred CcCcCcCCEEEEEcCCCcC
Confidence 9999999999999999975
No 8
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=362.99 Aligned_cols=234 Identities=55% Similarity=0.885 Sum_probs=215.0
Q ss_pred CCCCChHHHHHHHHHHHHh-cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCC
Q 024953 25 PVILTQDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDS 103 (260)
Q Consensus 25 ~~m~~~~~~K~~IA~~Aa~-lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~ 103 (260)
+.+..+++.|++.|++|.+ ++++|++||||||||+.+.+++|.+.+.++.+.+++.|++|.++++++.+.|+++..++.
T Consensus 19 ~~~~~~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~ 98 (261)
T KOG3075|consen 19 ESLSPQEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDS 98 (261)
T ss_pred cccCchHHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCccccCCC
Confidence 5577889999999999998 667799999999999999999999887667777999999999999999999999999999
Q ss_pred CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCc-cccEEEecCcHHHHHHHHHH
Q 024953 104 YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGL-AMPVEVVPYCWKFTAKRLQD 182 (260)
Q Consensus 104 ~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~-~lPvEV~p~~~~~v~~~l~~ 182 (260)
...+|++|+|||++|+++++++++|+++++||++.-+|+++|+++|++|+.+.||.... .+||||+|++|..+.+.|.+
T Consensus 99 hp~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~ 178 (261)
T KOG3075|consen 99 HPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSE 178 (261)
T ss_pred CceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999999977765433 49999999999999999999
Q ss_pred hhhhCCCceEEee---cCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEe
Q 024953 183 LFEDCGCVAKLRT---TGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIR 258 (260)
Q Consensus 183 ~~~~~g~~~~~R~---~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~ 258 (260)
|. .|+.+.||+ ++.+||||||||+|+|++|..++.|+.+++.+++.+|||||||||+++++.+|++.++| +.+.
T Consensus 179 -~~-~g~~~~lR~g~~~k~~P~VTDngN~IiDv~fe~~i~~~~~~~~~i~~~pGVVe~GLfi~~~~~v~ia~~~gsv~v~ 256 (261)
T KOG3075|consen 179 -FS-FGCEAKLRMGAEGKAGPYVTDNGNFIIDVQFETPIRDLNAASTSIKKIPGVVEHGLFIGMADTVIIAESDGSVSVT 256 (261)
T ss_pred -hh-ccchheecccccccCCCeEeeCCCeEEEEEeecccCCHHHHHHHHhhcCCccccceEeecccEEEEEecCCcccee
Confidence 22 599999997 36799999999999999997679999999999999999999999999999999999999 7665
Q ss_pred cC
Q 024953 259 NK 260 (260)
Q Consensus 259 ~~ 260 (260)
+|
T Consensus 257 ~~ 258 (261)
T KOG3075|consen 257 KK 258 (261)
T ss_pred ec
Confidence 43
No 9
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=99.93 E-value=6.7e-26 Score=191.09 Aligned_cols=120 Identities=21% Similarity=0.216 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhC-CCcEEEcC------
Q 024953 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL-GIPLSDLD------ 102 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~-gi~v~~l~------ 102 (260)
+.++|++||++|+++|+|||+||||+|||+++++++|.++ +++||||||+.++..|.+. +++++.++
T Consensus 2 n~~~K~~IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 2 NAEEKRAIARKAASLIEDGDTIFLDSGTTTLELAKYLPDK------KNLTVVTNSLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEECchHHHHHHHHhhcC------CceEEEECCHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 4578999999999999999999999999999999999875 3899999999999999765 66666543
Q ss_pred -------------CCccccEEEEccCcccCCC-CcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 -------------SYPVVDLAIDGADEVDPFM-NLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 -------------~~~~~D~af~GadgId~~~-~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|++|+||+|++.++ .+..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~-~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIE-NSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHH-hcCeEEEEeChhhcCCe
Confidence 4689999999999999964 55677889999999885 68999999999999543
No 10
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.91 E-value=4.1e-24 Score=192.25 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hCCCcEEEcC----
Q 024953 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SLGIPLSDLD---- 102 (260)
Q Consensus 28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~gi~v~~l~---- 102 (260)
..+.++|++||++|+++|+|||+||||+|||+++++++|+++ +++||||||+.++..+. ..++.++.++
T Consensus 72 ~~~~~~K~~IA~~Aa~~I~~g~tIflD~GtT~~~la~~L~~~------~~ltVvTNsl~ia~~l~~~~~~~villGG~~~ 145 (252)
T PRK10906 72 ATQTEEKERIARKVASQIPNGATLFIDIGTTPEAVAHALLNH------SNLRIVTNNLNVANTLMAKEDFRIILAGGELR 145 (252)
T ss_pred hhcHHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhcCC------CCcEEEECcHHHHHHHhhCCCCEEEEECCEEe
Confidence 345678999999999999999999999999999999999764 27999999999998886 4567776553
Q ss_pred ---------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 ---------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 ---------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|+||+||+|+|.+++ +..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus 146 ~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~-~a~~~illaD~sKf~~~ 214 (252)
T PRK10906 146 SRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIE-NSRHVMLVVDHSKFGRN 214 (252)
T ss_pred cCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHH-hcCcEEEEEccchhCCc
Confidence 46899999999999998754 5677889999999885 58999999999999643
No 11
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=99.91 E-value=3.8e-24 Score=192.30 Aligned_cols=121 Identities=19% Similarity=0.071 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC----
Q 024953 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD---- 102 (260)
Q Consensus 28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~---- 102 (260)
..+.++|++||++|+++|+|||+||||+|||+++++++|++. .++||||||+.++..+.. .+++++.++
T Consensus 73 ~~~~~~K~~IA~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~------~~ltvvTnsl~i~~~l~~~~~~~villGG~~~ 146 (252)
T PRK10681 73 SRLVEEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNE------LPFTAVCYSLNTFLALQEKPHCRAILCGGEFH 146 (252)
T ss_pred HhCHHHHHHHHHHHHhhcCCCCEEEEECCccHHHHHHhcCCC------CCeEEEECCHHHHHHHhhCCCCEEEEECcEEe
Confidence 345578999999999999999999999999999999999753 269999999999988864 566766543
Q ss_pred ---------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCccc
Q 024953 103 ---------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVP 155 (260)
Q Consensus 103 ---------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~ 155 (260)
+.+++|+||+||+|+|.+++ +..+..++.+|++|+. +|+++|+|+|||||+.
T Consensus 147 ~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~-~a~~~illaD~sKf~~ 214 (252)
T PRK10681 147 ASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMA-MAQKHVLVVDHSKFGK 214 (252)
T ss_pred cCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHH-hhCcEEEEEcccccCc
Confidence 46899999999999998754 5677889999998885 5899999999999964
No 12
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=99.91 E-value=9.1e-24 Score=189.80 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=102.8
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC-----
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD----- 102 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~----- 102 (260)
.+.++|++||++|+++|+|||+||||+|||+++++++|.+. ++||||||+.++..+.. .+++++.++
T Consensus 75 ~~~~~K~~IA~~Aa~~I~~g~~Ifld~GsT~~~la~~L~~~-------~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~ 147 (251)
T PRK13509 75 QNHDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGK-------PVQIITNYLPLANYLIDQEHDSVIIMGGQYNK 147 (251)
T ss_pred hCHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHhCCC-------CeEEEeCCHHHHHHHHhCCCCEEEEECCeEcC
Confidence 45578999999999999999999999999999999999753 69999999999988864 456666543
Q ss_pred -------------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 -------------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 -------------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|+||+||+|+|.+|.+..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus 148 ~~~~~~G~~~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~-~s~~~illaDssKfg~~ 213 (251)
T PRK13509 148 SQSITLSPQGSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLS-VVGKLVVLVDSSKIGER 213 (251)
T ss_pred CcceeECHHHHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHH-HhCcEEEEEcccccCce
Confidence 468999999999999976656677788999999885 68999999999999643
No 13
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=99.90 E-value=9.9e-24 Score=191.43 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=104.0
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC-----
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD----- 102 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~----- 102 (260)
.+.++|++||++|+++|+|||+||||+|||+++++++|+++ .++||||||+.++..+.. .+++++.++
T Consensus 88 ~~~~~K~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~ 161 (269)
T PRK09802 88 LNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKH------TDVIAMTNGMNVANALLEAEGVELLMTGGHLRR 161 (269)
T ss_pred hCHHHHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcCcC------CCeEEEeCCHHHHHHHHhCCCCEEEEECCEEec
Confidence 45578999999999999999999999999999999999754 269999999999988864 567776553
Q ss_pred --------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 --------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 --------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|+||+||+|++.+++ +..+..++.+|++|+. +|++.|+|+|||||+..
T Consensus 162 ~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~-~s~~~ill~D~sKf~~~ 229 (269)
T PRK09802 162 QSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCE-VAERIIVVTDSSKFNRS 229 (269)
T ss_pred CCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHH-HcCcEEEEEeccccCCc
Confidence 46899999999999998755 4677889999999885 58999999999999643
No 14
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=99.90 E-value=2e-23 Score=188.08 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CC-CcEEEcC----
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LG-IPLSDLD---- 102 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~g-i~v~~l~---- 102 (260)
...++|++||++|+++|++||+||||+|||+++++++|++. .++||||||+.++..+.. .+ +.++.++
T Consensus 73 ~~~~~K~~IA~~Aa~~I~~g~tIfld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~ 146 (256)
T PRK10434 73 INTHKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRF------NNITVMTNSLHIVNALSELDNEQTILMPGGTFR 146 (256)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhccC------CCeEEEECCHHHHHHHhhCCCCCEEEEECCEEe
Confidence 35578999999999999999999999999999999999864 269999999999998865 33 5666543
Q ss_pred ---------------CCccccEEEEccCcccCCCCcc-cCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 ---------------SYPVVDLAIDGADEVDPFMNLV-KGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 ---------------~~~~~D~af~GadgId~~~~~i-~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|+||+||+|++.++++. .+. ++.+|++|+. +|+++|+|+||+||+..
T Consensus 147 ~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~-~~~~k~~~~~-~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 147 KKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNE-VYTVSKAMCN-AAREIILMADSSKFGRK 214 (256)
T ss_pred CCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCH-HHHHHHHHHH-HcCcEEEEECCcccCCc
Confidence 4689999999999999886554 444 5889987775 69999999999999643
No 15
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.90 E-value=2.5e-23 Score=185.94 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hCCCcEEEcC-----
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SLGIPLSDLD----- 102 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~gi~v~~l~----- 102 (260)
.+.++|++||++|+++|+|||+||||+|||+.+++++|+++ ++||||||+.++..+. ..+++++.++
T Consensus 75 ~~~~~K~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~~-------~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~ 147 (240)
T PRK10411 75 SHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDI-------NIQVFTNSHPICQELGKRERIQLISSGGTLER 147 (240)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCCC-------CeEEEeCCHHHHHHHhcCCCCEEEEECCEEeC
Confidence 45678999999999999999999999999999999999753 6999999999998885 4567766543
Q ss_pred --------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCccc
Q 024953 103 --------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVP 155 (260)
Q Consensus 103 --------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~ 155 (260)
+.+++|++|+||+|++.+++ +.....++.+|+.|+. +|+++|+++|||||+.
T Consensus 148 ~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~-~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 148 KYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLK-RAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHH-HhCcEEEEEeccccCC
Confidence 46899999999999998754 4577889999988885 6899999999999954
No 16
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.6e-23 Score=186.20 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC----
Q 024953 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD---- 102 (260)
Q Consensus 28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~---- 102 (260)
..+.++|++||++|+++|+|||+||||+|||++++|++|++. +++|+||||+.++..|.. .+..++.++
T Consensus 72 ~~~~~eK~~IA~~Aa~lI~~g~~ifld~GTT~~~la~~L~~~------~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~ 145 (253)
T COG1349 72 ALNTEEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDD------NNLTVITNSLNIAAALLEKPNIEVILLGGTVR 145 (253)
T ss_pred HhhHHHHHHHHHHHHhhCCCCCEEEECCCcHHHHHHHHhCcC------CCeEEEeCCHHHHHHHHhCCCCeEEEeCcEEE
Confidence 345678999999999999999999999999999999999865 259999999999887754 456665442
Q ss_pred ---------------CCccccEEEEccCcccCCC-CcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 ---------------SYPVVDLAIDGADEVDPFM-NLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 ---------------~~~~~D~af~GadgId~~~-~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
+.+++|++|+|++|+|.++ .+..+..++.+|++|+. +|+++|+|+|||||+++
T Consensus 146 ~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~-~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 146 KKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIE-AAREVILLADSSKFGRV 214 (253)
T ss_pred cCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHH-hhCcEEEEEcCCccCCc
Confidence 4689999999999999875 45677889999988875 68999999999999644
No 17
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=98.29 E-value=1.5e-05 Score=73.00 Aligned_cols=130 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEE--CCc-----HHHHHHHHhCCCcEEEcCC
Q 024953 32 ELKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGI--PTS-----KKTHEQAVSLGIPLSDLDS 103 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvV--TnS-----l~~a~~l~~~gi~v~~l~~ 103 (260)
+.+++|++.++++|++|++|.- +.++|+..+++...+. + ++++|+ -+- ...+.+|.+.|+++..+-.
T Consensus 94 ~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 94 EAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK---G--KRFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence 4578899999999999998774 5577888888777643 1 134433 222 2457778888998876532
Q ss_pred C------ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953 104 Y------PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169 (260)
Q Consensus 104 ~------~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~ 169 (260)
. .++|++++|||.|..+|....--|...+- .+..+....+|+++.++||...+.. ..+|+|-.
T Consensus 169 sa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA-~~Ak~~~vPfyV~a~~~k~~~~~~~--~~i~ieer 237 (275)
T PRK08335 169 AQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLA-LACHDNGVPFYVAAETFKFHPELKS--EEVELVER 237 (275)
T ss_pred cHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEECccceecccCCC--CCcccccc
Confidence 1 26999999999999999876555544442 2223456789999999999776543 26666544
No 18
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9e-06 Score=75.05 Aligned_cols=121 Identities=21% Similarity=0.191 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcH------HHHHHHHhCCCcEEEc
Q 024953 30 QDELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSK------KTHEQAVSLGIPLSDL 101 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl------~~a~~l~~~gi~v~~l 101 (260)
.+..|+.||+.++++|+||++|. .+.++|+..+++.-.++. ++++| ||-|- .++..|++.|++++.+
T Consensus 102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~-----k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRG-----KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcC-----CceEEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 44678899999999999999988 699999999988877652 13444 55443 4678889999988765
Q ss_pred CC------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 102 DS------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 102 ~~------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
-. ..++|++|+|+|+|..+|.++.--|...+-.. ..+...-+++++.+-||+++
T Consensus 177 ~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~-A~e~~~Pf~v~aesyKf~p~ 236 (301)
T COG1184 177 VDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALA-ARELRVPFYVVAESYKFVPK 236 (301)
T ss_pred echHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHH-HHHhCCCEEEEeeeeccccc
Confidence 31 12699999999999999988766666555422 23456789999999999875
No 19
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=98.25 E-value=2e-05 Score=73.04 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCcCCCEEEECC-C--------hhHHHHHHHHHhHHhcCCCCCEEE-ECCc-------HHHHHHHHhCC
Q 024953 33 LKKIAAYKAVEFVESGMVLGLGT-G--------STAKHAVDRIGELLRQGKLTNIVG-IPTS-------KKTHEQAVSLG 95 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lgs-G--------ST~~~la~~L~~~~~~~~l~~itv-VTnS-------l~~a~~l~~~g 95 (260)
..++||+.|+++|++|++|.--+ + +|+..+++...+.. ++++| |+-| ..++..|.+.|
T Consensus 104 ~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g-----~~~~V~v~EsrP~~~G~~~~a~~L~~~g 178 (303)
T TIGR00524 104 TNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDG-----KRIRVIACETRPRNQGSRLTAWELMQDG 178 (303)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcC-----CceEEEECCCCCccchHHHHHHHHHHCC
Confidence 45779999999999999887544 3 58888887775431 13333 3321 34677888899
Q ss_pred CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
+++..+. +..++|++|+|||.|-.+|.+..--|...+- .+..+....+|+++.+.||..+... +..+|+|
T Consensus 179 I~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA-~~Ak~~~vPv~V~a~s~K~~~~~~~-g~~i~~e 256 (303)
T TIGR00524 179 IDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLA-VLAKEFRIPFFVAAPLSTFDTKTSC-GEDIVIE 256 (303)
T ss_pred CCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHH-HHHHHhCCCEEEecccccccCCCCC-ccccccc
Confidence 9887652 2236999999999999999877555554443 2223456789999999999765321 2467776
Q ss_pred Eec
Q 024953 168 VVP 170 (260)
Q Consensus 168 V~p 170 (260)
-.+
T Consensus 257 ~~~ 259 (303)
T TIGR00524 257 ERD 259 (303)
T ss_pred cCC
Confidence 543
No 20
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=98.24 E-value=1.5e-05 Score=74.04 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCc------HHHHHHHHhCCCcEEEcCC
Q 024953 32 ELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTS------KKTHEQAVSLGIPLSDLDS 103 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-VTnS------l~~a~~l~~~gi~v~~l~~ 103 (260)
...++|++.|+++|++|++|. .+.++|+..+++...+.. ++++| |+-| ..++..|.+.|+++..+..
T Consensus 105 ~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~-----k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 105 NAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQG-----KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCC-----CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 356779999999999999887 566789988887775431 13333 3322 2467788889998875531
Q ss_pred ------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953 104 ------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169 (260)
Q Consensus 104 ------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~ 169 (260)
-.++|++|+|||.|-.+|....--|...+- .+..+...-+|+++.+.||..+.-. +..+|+|-.
T Consensus 180 sav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A-~~Ak~~~vPv~V~a~~~K~~~~~~~-~~~~~ie~~ 249 (310)
T PRK08535 180 SAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIA-LAAHEARVPFMVAAETYKFSPKTLL-GELVEIEER 249 (310)
T ss_pred hHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHH-HHHHHhCCCEEEecccceecCCCCC-CCcceeccc
Confidence 126999999999999999877555544442 2234557889999999999765321 134566544
No 21
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=98.24 E-value=1.6e-05 Score=73.62 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCc-----HHHHHHHHhCCCcEEEcCC-
Q 024953 31 DELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS-----KKTHEQAVSLGIPLSDLDS- 103 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v~~l~~- 103 (260)
....++|++.|+++|++|++|. .+.++|+..+++...+..+ .+ .+.+.-+. ..++..|.+.|+++..+..
T Consensus 99 ~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~--~f-~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 99 DKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGK--DI-EVIATETRPRKQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCC--cE-EEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence 3457789999999999999887 5667898888877754311 11 23332222 2467888889998875521
Q ss_pred -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953 104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP 170 (260)
Q Consensus 104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p 170 (260)
..++|++|+|||.|-.+|....--|...+- .+..+....+|++|++.||..+.-. +..+++|-.+
T Consensus 176 a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA-~~Ak~~~vPv~V~a~~~K~~~~~~~-~~~~~ie~~~ 245 (301)
T TIGR00511 176 AVRYFMKEVDHVVVGADAITANGALINKIGTSQLA-LAAREARVPFMVAAETYKFHPKTIT-GELVEIEERD 245 (301)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHH-HHHHHhCCCEEEEcccceecCCCCC-CCcccccccC
Confidence 126999999999999999877555544443 2223557899999999999765321 1345555543
No 22
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=98.10 E-value=6.6e-05 Score=70.45 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCcCCC----EEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-CCcH-------HHHHH
Q 024953 32 ELKKIAAYKAVEFVESGM----VLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-PTSK-------KTHEQ 90 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~----~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-TnSl-------~~a~~ 90 (260)
+..++|++.++++|++|+ +|.-- +| +|+..+++...++ + ++++|+ +-|- .++.+
T Consensus 127 ~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g--~~~~V~v~EsrP~~qG~rlta~~ 201 (331)
T TIGR00512 127 EDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---G--RLEHVYADETRPRLQGARLTAWE 201 (331)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---C--CceEEEECCCCchhhHHHHHHHH
Confidence 346679999999999999 87763 33 3788787777543 1 134443 3221 24667
Q ss_pred HHhCCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCc
Q 024953 91 AVSLGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGL 162 (260)
Q Consensus 91 l~~~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~ 162 (260)
|.+.|+++..+. +..++|++++|||.|..+|.+..--|...+- .+..+....+|+++.++||..+.-. ..
T Consensus 202 L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA-~~Ak~~~vPfyV~a~~~kfd~~~~~-~~ 279 (331)
T TIGR00512 202 LVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLA-VLAKHHGVPFYVAAPTSTIDLETKD-GA 279 (331)
T ss_pred HHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccccCCCC-cc
Confidence 888999887553 2236999999999999999876555544442 2224556789999999999755322 24
Q ss_pred cccEEEec
Q 024953 163 AMPVEVVP 170 (260)
Q Consensus 163 ~lPvEV~p 170 (260)
.+|+|-.+
T Consensus 280 ~i~iE~r~ 287 (331)
T TIGR00512 280 EIPIEERP 287 (331)
T ss_pred ccccccCC
Confidence 57777654
No 23
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=97.98 E-value=0.00014 Score=68.57 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEE-CCc-H------HHHHHHHhCC
Q 024953 33 LKKIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGI-PTS-K------KTHEQAVSLG 95 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvV-TnS-l------~~a~~l~~~g 95 (260)
..++|++.++++|++|++|.-- +|+ |++.+++...++ + ++++|+ +-| . .++.+|.+.|
T Consensus 132 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~---g--k~~~V~v~EsRP~~qG~~lta~eL~~~G 206 (344)
T PRK05720 132 INRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK---G--IDIHVYADETRPRLQGARLTAWELYQAG 206 (344)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHc---C--CceEEEEcCCCChhhhHHHHHHHHHHCC
Confidence 3457899999999999988753 443 566677766543 1 134443 322 1 2467788899
Q ss_pred CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
+++..+- +...+|++|+|||.|-.+|....--|...+- .+..+....+|+++.++||..+... +..+|+|
T Consensus 207 I~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lA-l~Ak~~~vPfyV~a~~~kfd~~~~~-g~~i~iE 284 (344)
T PRK05720 207 IDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLA-IAAKYHGVPFYVAAPSSTIDLTLAD-GKEIPIE 284 (344)
T ss_pred CCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccCcCCCC-Ccccccc
Confidence 9887653 2235999999999999999876555544442 2224557789999999999765322 2457776
Q ss_pred Eec
Q 024953 168 VVP 170 (260)
Q Consensus 168 V~p 170 (260)
-.+
T Consensus 285 ~r~ 287 (344)
T PRK05720 285 ERD 287 (344)
T ss_pred cCC
Confidence 654
No 24
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.90 E-value=5e-05 Score=67.25 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH--------------HHHHHhCCCc
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT--------------HEQAVSLGIP 97 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~--------------a~~l~~~gi~ 97 (260)
..|..+|++|++.++||+.|.||.| --...|.++++. +.+.+.|.+. .....-.+.+
T Consensus 6 ~~~e~ia~r~A~el~dG~~VnlGIG-lPtlvan~~~~~--------~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~~ 76 (225)
T COG2057 6 TEREMIAKRAARELKDGDYVNLGIG-LPTLVANYAPEG--------MNVLLQSENGLLGVGPAPLPGEEDADLINAGKQP 76 (225)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCC-chHHhHhhcccc--------cceEEecCceeEEecCCCCCCCCCcchhhCCCce
Confidence 5689999999999999999999999 666777888742 2222222211 1112222223
Q ss_pred EEEc--------------CCCccccEEEEccCcccCCCC---------cccCcchhHHHHHHHHHhcCcEEEEEeCCCcc
Q 024953 98 LSDL--------------DSYPVVDLAIDGADEVDPFMN---------LVKGRGGSLLREKMVEGACKKFVVIVDESKLV 154 (260)
Q Consensus 98 v~~l--------------~~~~~~D~af~GadgId~~~~---------~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~ 154 (260)
+..+ -+.-|+|++|+|+-+||..++ ..+|.++|+- +...|+++|++.+|+|-.
T Consensus 77 vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmd----l~~gakkvii~m~H~~k~ 152 (225)
T COG2057 77 VTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMD----LVTGAKKVIVVMEHTKKS 152 (225)
T ss_pred eEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchh----hhcCCcEEEEEeeeeccc
Confidence 3221 134599999999999998764 3466666654 245789999999999873
No 25
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=97.86 E-value=0.00011 Score=66.77 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH-----HHHHHHHhCCCcEEEcCC
Q 024953 30 QDELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK-----KTHEQAVSLGIPLSDLDS 103 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl-----~~a~~l~~~gi~v~~l~~ 103 (260)
.....++|++.+.++|++|++|. .|-++|+..+.....+..+ .+ .+.|+-+.. ..+..|.+.|+++..+..
T Consensus 90 ~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~--~~-~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d 166 (282)
T PF01008_consen 90 IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGK--KF-RVIVLESRPYNEGRLMAKELAEAGIPVTLIPD 166 (282)
T ss_dssp HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTE--EE-EEEEE--TTTTHHHTHHHHHHHTT-EEEEE-G
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCC--eE-EEEEccCCcchhhhhHHHHhhhcceeEEEEec
Confidence 34557789999999999999887 6999999988887544211 01 233332221 467778888998775531
Q ss_pred ------Ccc-ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 104 ------YPV-VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 104 ------~~~-~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
..+ +|++++|||.|-.+|..+.--|...+- -...+....+|+++++.||..+
T Consensus 167 ~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a-~~Ak~~~vPv~v~~~~~K~~~~ 225 (282)
T PF01008_consen 167 SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLA-LAAKEFNVPVYVLAESYKFSPR 225 (282)
T ss_dssp GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHH-HHHHHTT-EEEEE--GGGBETT
T ss_pred hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHH-HHHHhhCCCEEEEccccccccc
Confidence 125 999999999999999876544443332 1223456789999999999765
No 26
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00015 Score=65.63 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCcCCCEEEECCChhH-HHHHHHHHhHHhcCCCCCEEE-ECC------cHHHHHHHHhCCCcEEEcCC-
Q 024953 33 LKKIAAYKAVEFVESGMVLGLGTGSTA-KHAVDRIGELLRQGKLTNIVG-IPT------SKKTHEQAVSLGIPLSDLDS- 103 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~LgsGST~-~~la~~L~~~~~~~~l~~itv-VTn------Sl~~a~~l~~~gi~v~~l~~- 103 (260)
.++.||+.+-.+|.||++|..-+=|-+ +.+...-++.. +...| ||- ....+.+|.+.|+++..+-.
T Consensus 116 sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~-----~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDS 190 (313)
T KOG1466|consen 116 SRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNK-----KRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDS 190 (313)
T ss_pred HHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcC-----ceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehh
Confidence 467799999999999999998665544 33333323221 24555 442 33567788999999876421
Q ss_pred -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHH-HhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHH
Q 024953 104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVE-GACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWK 174 (260)
Q Consensus 104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~-~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~ 174 (260)
..++|..|.||+||-++|+.|.-.|...+ .+++ ++-+-+|++|.+-||+.-+-.+...+|-+-.|+.+.
T Consensus 191 aVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~--~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~~f~ 265 (313)
T KOG1466|consen 191 AVGYVMERVDLVLVGAEGVVESGGIINKIGTYQV--AVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPFKFS 265 (313)
T ss_pred hHHHHHhhccEEEEccceeeecCceeeecccchh--hhhHHhcCCCeEEEeeccceeeeccCcccccccccCCcccC
Confidence 23799999999999998888765554333 2222 334679999999999754322234667666665543
No 27
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.81 E-value=0.00036 Score=66.27 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCcCCCEEEEC--CC--------hhHHHHHHHHHhHHhcCCCCCEEEECCc-H-------HHHHHHHh
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLG--TG--------STAKHAVDRIGELLRQGKLTNIVGIPTS-K-------KTHEQAVS 93 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~Lg--sG--------ST~~~la~~L~~~~~~~~l~~itvVTnS-l-------~~a~~l~~ 93 (260)
+..++|++.++++|++|++|.-- +| .|+..+++...+. + ++++|+... - .++.+|.+
T Consensus 151 ~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~ 225 (363)
T PRK05772 151 DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKAL---G--MSVSVIAPETRPWLQGSRLTVYELME 225 (363)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHC---C--CeEEEEECCCCccchhHHHHHHHHHH
Confidence 34677999999999999987753 33 2566666665543 1 245554322 1 24667888
Q ss_pred CCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCcccc
Q 024953 94 LGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMP 165 (260)
Q Consensus 94 ~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lP 165 (260)
.|+++..+- ....+|++|+|||.|-.+|....--|...+- .+..+....+|++|.++||..+... -.+|
T Consensus 226 ~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA-~~Ak~~~vPfyV~ap~~k~d~~~~~--~~i~ 302 (363)
T PRK05772 226 EGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEA-VIAHELGIPFYALAPTSTFDLKSDV--NDVK 302 (363)
T ss_pred CCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHH-HHHHHhCCCEEEEccccccCccccc--cccc
Confidence 999887542 2235999999999999999876555544442 2223456789999999999765432 3566
Q ss_pred EEEe
Q 024953 166 VEVV 169 (260)
Q Consensus 166 vEV~ 169 (260)
+|-.
T Consensus 303 ieer 306 (363)
T PRK05772 303 IEER 306 (363)
T ss_pred cccC
Confidence 6554
No 28
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.64 E-value=0.0011 Score=62.23 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEECCc--H-----H-HHHHHHhCCCc
Q 024953 35 KIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGIPTS--K-----K-THEQAVSLGIP 97 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTnS--l-----~-~a~~l~~~gi~ 97 (260)
++|++.|+++|++|++|.-- +|+ |++.+++...+. + ++++|+... . + ++.+|.+.|++
T Consensus 124 ~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~~GI~ 198 (329)
T PRK06371 124 KKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---G--KNIFVFVDETRPRLQGARLTAWELAQEGID 198 (329)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---C--CeeEEEECCCCCcchHHHHHHHHHHHCCCC
Confidence 56899999999999988763 344 456777766543 1 134444332 1 2 46778888999
Q ss_pred EEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953 98 LSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169 (260)
Q Consensus 98 v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~ 169 (260)
+..+- +...+|++|+|||.|-.+|.+..--|...+- .+..+....+|++|.+++|...... +-.+|+|-.
T Consensus 199 vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lA-l~Ak~~~VPfyV~a~~~t~d~~~~~-g~~i~iEer 276 (329)
T PRK06371 199 HAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKA-VLAKVNGIPFYVAAPGSTFDFSIKS-GDEIPIEER 276 (329)
T ss_pred EEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEeccccccCCCCCC-cCccccccC
Confidence 87542 2235999999999999999877555544442 2223456788999998888533221 124666543
No 29
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.54 E-value=0.0019 Score=60.91 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEECC-cH------H-HHHHHHhCC
Q 024953 33 LKKIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGIPT-SK------K-THEQAVSLG 95 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTn-Sl------~-~a~~l~~~g 95 (260)
..++|++.++++|++|++|.-- +|+ |++.+++...+. + ++++|+.. |- + ++.+|.+.|
T Consensus 133 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~G 207 (339)
T PRK06036 133 RNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---G--KEIKVIACETRPLNQGSRLTTWELMQDN 207 (339)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHc---C--CceEEEEcCCCchhhHHHHHHHHHHHcC
Confidence 3567889999999999988864 343 677777776543 1 14544433 21 2 466788899
Q ss_pred CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
+++..+- +...+|++|.|||.|-.+| ...--|...+- .+..+....+|++|..+||...... + .+|+|
T Consensus 208 I~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA-~~Ak~~~vPfyV~ap~s~~d~~~~~-g-~i~iE 283 (339)
T PRK06036 208 IPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHS-VLAKEHEIPFYVAAPLSTFDFEGWE-G-SVKIE 283 (339)
T ss_pred CCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHH-HHHHHhCCCEEEEeecCccCCCcCC-C-Ccccc
Confidence 9887542 2234999999999998885 43323333331 2223556789999999999544321 2 46665
Q ss_pred Ee
Q 024953 168 VV 169 (260)
Q Consensus 168 V~ 169 (260)
-.
T Consensus 284 ~r 285 (339)
T PRK06036 284 ER 285 (339)
T ss_pred cC
Confidence 53
No 30
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=97.31 E-value=0.0042 Score=58.91 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECC---------ChhHHHHHHHHHhHHhcCCCCCEEE-ECCcH------HH-HHHHHhC
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGT---------GSTAKHAVDRIGELLRQGKLTNIVG-IPTSK------KT-HEQAVSL 94 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~Lgs---------GST~~~la~~L~~~~~~~~l~~itv-VTnSl------~~-a~~l~~~ 94 (260)
+..++|++.++++|++|+ |.--+ ..|++.+++...+. + +.+.| ++=|- +. +.+|.+.
T Consensus 145 ~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~ 218 (356)
T PRK08334 145 EANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKD---G--TLKLLWVDETRPVLQGARLSAWEYHYD 218 (356)
T ss_pred HHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHc---C--CeEEEEECCCCchhhHHHHHHHHHHHC
Confidence 346789999999999999 54333 24678888877643 2 13443 44221 23 5678888
Q ss_pred CCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccE
Q 024953 95 GIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV 166 (260)
Q Consensus 95 gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPv 166 (260)
|+++..+- +..++|++|.|||.|-.+|....--|...+- .+..+...-+|++|..+||...... +..+|+
T Consensus 219 GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA-~~Ak~~~vPfyV~Ap~~t~d~~~~~-~~~i~i 296 (356)
T PRK08334 219 GIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLA-VLAKEHGIPFFTVAPLSTIDMSLKS-GKEIPI 296 (356)
T ss_pred CCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEEcccCccCCCCCC-Cccccc
Confidence 99887542 2236999999999999999876555544432 2223456789999999999644432 235677
Q ss_pred EEe
Q 024953 167 EVV 169 (260)
Q Consensus 167 EV~ 169 (260)
|-.
T Consensus 297 E~r 299 (356)
T PRK08334 297 EER 299 (356)
T ss_pred ccC
Confidence 654
No 31
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=97.22 E-value=0.0037 Score=56.67 Aligned_cols=116 Identities=19% Similarity=0.142 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCc-----HHHHHHHHhCCCcEEEcCC---
Q 024953 33 LKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS-----KKTHEQAVSLGIPLSDLDS--- 103 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v~~l~~--- 103 (260)
.-+.|++.|+++| +|++|. +|+++|+..+...-. + ...+.++-+- ..++..|.+.|+++..+..
T Consensus 73 ~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~~-~-----~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~ 145 (253)
T PRK06372 73 HEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSSE-K-----IKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASM 145 (253)
T ss_pred HHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcC-C-----CCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHH
Confidence 3456888899999 556665 687888877764321 1 0134333322 2467778888998775421
Q ss_pred ---CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 104 ---YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 104 ---~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
..++|++|+|||.|-.+|....--|...+- .+..+...-+|+++.+-||.++
T Consensus 146 ~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~A-l~A~~~~vPv~V~~~s~Kf~~~ 200 (253)
T PRK06372 146 CEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLA-LCARYLKKPFYSLTISMKIERN 200 (253)
T ss_pred HHHHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEEeeccccCCC
Confidence 126999999999999999877555554443 2234557789999999999654
No 32
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=97.01 E-value=0.0029 Score=55.60 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH------H-----HHHHhC--------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT------H-----EQAVSL-------- 94 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~------a-----~~l~~~-------- 94 (260)
++.||+.|+++|+||++|.+|.| .-..++.+|.+. +++++.+-+=-. . ..+.+.
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~lGiG-iP~~va~~l~~~------~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g~~~~~~~ 75 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIG-IPTLVANYLPEG------IEVFLQSENGILGMGPAPEPGEEDPDLINAGKQPVTLL 75 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEeec-HHHHHHHHHhcC------CeEEEEEeCceecCccCCCCCCcCHHHHhCCCCceeec
Confidence 68899999999999999999999 667777777652 256665543111 0 022222
Q ss_pred -CCcEE------EcCCCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953 95 -GIPLS------DLDSYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGACKKFVVIVDESK 152 (260)
Q Consensus 95 -gi~v~------~l~~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A~~~IlLaD~sK 152 (260)
+..+. .+....++|++|+|+-+||..|+. ..|.|++.- +.+.|++.|+...|++
T Consensus 76 ~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d----~~~~a~~~i~~~~~t~ 145 (207)
T TIGR02428 76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAMD----LVAGAKRVIVAMEHTT 145 (207)
T ss_pred cCcEEecChhheeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchhh----hhcCCCEEEEEEeeEC
Confidence 11111 122345899999999999986542 233333222 2345788877776644
No 33
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=96.60 E-value=0.01 Score=52.69 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCcCCCEEEECCCh---hHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGS---T~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
|..=+++|+++|+|||+|.+|.-. +-..++++|.++ ++ +++|++.|+
T Consensus 4 K~~s~~eAv~~I~DG~ti~~gGf~~~~~P~ali~al~r~---~~-~dLtli~~~ 53 (219)
T PRK09920 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---GV-RDLTLIAND 53 (219)
T ss_pred ccCcHHHHHhcCCCCCEEEECcccCcCCHHHHHHHHHhc---CC-CceEEEEeC
Confidence 444567888999999999987643 677888888654 22 489999754
No 34
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=96.38 E-value=0.026 Score=50.19 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=34.1
Q ss_pred CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 ~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
..+++|+||+=+...|..||+...++....- ..++.+|+++|+-++ ++++.
T Consensus 148 ~a~~~DvAlIha~~AD~~GN~~~~~~~~~~~-~~~A~AAk~vIv~vE--~IV~~ 198 (222)
T TIGR02429 148 YPLPADFALIKAHKADRWGNLTYRKAARNFG-PIMAMAAKTTIAQVS--QVVEL 198 (222)
T ss_pred cCCCCcEEEEEecccCCCCcEEEECccccCC-HHHHhhcCcEEEEEE--EEecC
Confidence 3468999999999999999986544323232 236677888655444 45543
No 35
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=96.03 E-value=0.084 Score=52.18 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=69.1
Q ss_pred HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhc-----CCCCCEEEECCcHH-----------------------
Q 024953 38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQ-----GKLTNIVGIPTSKK----------------------- 86 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~-----~~l~~itvVTnSl~----------------------- 86 (260)
+++|+++|+|||+|++|.. .+-..|.++|.++.++ .+. ++++++....
T Consensus 5 aeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~-~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~s 83 (485)
T TIGR03458 5 ADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPF-KITLLTGASTGPELDGVLAEADAIARRLPYQSD 83 (485)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCc-cEEEEEecccCCcccccccccCCEEEEecccCC
Confidence 6789999999999999964 6788889999766421 111 5665552211
Q ss_pred --HHHHHHhCCCcEEEc---------CCCc--cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953 87 --THEQAVSLGIPLSDL---------DSYP--VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (260)
Q Consensus 87 --~a~~l~~~gi~v~~l---------~~~~--~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s 151 (260)
......+..+..+.. .... ++|++++-+.-.|.+|++..+......+ .+ +++|+++|+-++..
T Consensus 84 p~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~-~a-a~aAk~VIvEVN~~ 159 (485)
T TIGR03458 84 PTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNP-TF-LELADKVIVEVNTW 159 (485)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHH-HH-HHhCCEEEEEECCC
Confidence 011111111222211 1122 7999999999999999887765444333 33 35688887777654
No 36
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=96.03 E-value=0.048 Score=48.35 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCcCCCEEEECC---ChhHHHHHHHHHhHHhcCCCCCEEEECCcH---H--HHHHHHhC-----------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGT---GSTAKHAVDRIGELLRQGKLTNIVGIPTSK---K--THEQAVSL----------- 94 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~Lgs---GST~~~la~~L~~~~~~~~l~~itvVTnSl---~--~a~~l~~~----------- 94 (260)
|..-+++|++.++|||+|.+|. --+-..++.+|-+. +.+++|+|+|+. . .-.++...
T Consensus 4 k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~~----GvkdLt~I~n~~g~~d~glg~li~~~~vkk~i~S~ig 79 (220)
T COG1788 4 KLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIRQ----GVKDLTVISNNAGFPDLGLGKLIGNGQVKKMIASYIG 79 (220)
T ss_pred hhhhHHHHHhhCCCCCEEEEccccccCChHHHHHHHHHc----CCcceEEEecCCCCCcccHHHHhhcCcEEEEEEeccC
Confidence 6667888999999999999864 23566777887653 235899999983 2 11222111
Q ss_pred ---------------------------------CCc------------------------EEEcCCCccccEEEEccCcc
Q 024953 95 ---------------------------------GIP------------------------LSDLDSYPVVDLAIDGADEV 117 (260)
Q Consensus 95 ---------------------------------gi~------------------------v~~l~~~~~~D~af~GadgI 117 (260)
|++ .+.+....+.|+||+-+.--
T Consensus 80 ~n~~~~r~~~~geleve~~pqgtLaerirAgg~Glp~~~t~tg~Gt~v~~gk~~~~~~G~~yvle~~lraDvAiI~a~ka 159 (220)
T COG1788 80 SNPEFGRQMLAGELEVELVPQGTLAERIRAGGAGLPGFPTRTGVGTLVAEGKVTRPFDGEPYVLEPALRADVALIHAHKA 159 (220)
T ss_pred CCHHHHHHhhcceEEEEECCchHHHHHHHhhhcCCCcceeccccCceeecCcEEEeeCCeEEEEecccCcceEEEEeeec
Confidence 010 00112456999999999999
Q ss_pred cCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 118 DPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 118 d~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
|..||+...+..-.+. ..++-+|+++|+-+++
T Consensus 160 D~~GNl~y~~t~~nfn-~~~A~AAk~~IvevEe 191 (220)
T COG1788 160 DSHGNLTYRGTARNFN-PLMAMAAKRTIVEVEE 191 (220)
T ss_pred CCcCCEEEEcccccCC-HHHHhhcCeEEEEEEe
Confidence 9999987655444444 3445568887765543
No 37
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=95.80 E-value=0.0098 Score=53.72 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=39.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----CcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 23 PPPVILTQDELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 23 ~~~~m~~~~~~K~~IA~~Aa~l----I~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
+|+.... ++.++.+++.|++| +++|++|+++-|+|+.+++++|... ..+++++|+
T Consensus 25 v~~~~~~-~~~~~~l~~~aA~~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~~----~~~~~~vV~ 83 (255)
T PF04198_consen 25 VPSPSDD-EDILESLGEAAAEYLSELLKDGDVIGVGWGRTLYAVANHLPPK----SLPNVTVVP 83 (255)
T ss_dssp ESSSTTT-HHHHHHHHHHHHHHHHHH--TTEEEEE-TSHHHHHHHHTS--S----SSSCEEEEE
T ss_pred ecCCCCh-HHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHHHHHHhcCcc----CCCCcEEEE
Confidence 3555555 66788899988874 5899999999999999999999863 124788876
No 38
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.087 Score=48.94 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-----ECCcH--HHHHHHHhCCCcEEEcC---
Q 024953 34 KKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-----IPTSK--KTHEQAVSLGIPLSDLD--- 102 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-----VTnSl--~~a~~l~~~gi~v~~l~--- 102 (260)
.+.||..|.++|.++++|. +|++.|+..|.+.-.++.+ ..+| .+|.- ..+..+.+.|++...+.
T Consensus 149 ~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~R-----kf~viVaE~~p~~qgH~~Ak~la~~giettVI~daa 223 (353)
T KOG1465|consen 149 RENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGR-----KFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAA 223 (353)
T ss_pred hHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhccC-----ceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHH
Confidence 3569999999999999887 7999999999887765421 2332 33333 34555667888744332
Q ss_pred ---CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953 103 ---SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156 (260)
Q Consensus 103 ---~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~ 156 (260)
...++.+.++|+..+-.+|++....|.-.+-.. ..+.+--+|++|-.-|+..-
T Consensus 224 VfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAla-Ak~h~vPv~VlAp~yKLsPl 279 (353)
T KOG1465|consen 224 VFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALA-AKHHSVPVIVLAPMYKLSPL 279 (353)
T ss_pred HHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHH-HHhcCCcEEEecchhhcCCC
Confidence 123899999999999999987655555444322 23557789999999998653
No 39
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.48 E-value=0.027 Score=52.83 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 16 GLSPLSSPPPVILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 16 ~~~~~~~~~~~m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
||.-.--+|+.-.+.+..++++|+.|+. .|++||+|+++.|+|+..+++++.... .+++++|+
T Consensus 79 gL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~----~~~~~vV~ 145 (321)
T COG2390 79 GLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP----LRDVKVVQ 145 (321)
T ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccHHHHHHHHhcCcCc----cCCeEEEE
Confidence 4443334555555555556768888876 669999999999999999999997542 23677764
No 40
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=95.21 E-value=0.13 Score=50.57 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHhCCCcEEEc--CC---
Q 024953 35 KIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVSLGIPLSDL--DS--- 103 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~~gi~v~~l--~~--- 103 (260)
++|-+.|.+-|+|||+|. .|+.+++..+..+-.+.. ..+ .+.||-.-.. ....|...|+++... ..
T Consensus 347 qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~--k~f-rVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~sy 423 (556)
T KOG1467|consen 347 QAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELG--KKF-RVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASY 423 (556)
T ss_pred HHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhC--cce-EEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHH
Confidence 346677788999999877 699999988877743321 112 3555554332 344556678775422 10
Q ss_pred -CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhc-CcEEEEEeCCCcccCC
Q 024953 104 -YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC-KKFVVIVDESKLVPHL 157 (260)
Q Consensus 104 -~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A-~~~IlLaD~sKf~~~l 157 (260)
...+++.|+||..+=.+|.+..--|.+.+ .|++++. =-+++.|.+-||.+|.
T Consensus 424 im~evtkvfLGahailsNG~vysR~GTa~v--alvAna~nVPVlVCCE~yKF~eRv 477 (556)
T KOG1467|consen 424 IMLEVTKVFLGAHAILSNGAVYSRVGTACV--ALVANAFNVPVLVCCEAYKFHERV 477 (556)
T ss_pred HHHhcceeeechhhhhcCcchhhhcchHHH--HHHhcccCCCEEEEechhhhhhhh
Confidence 13689999999999888876655555555 4554322 2467888899998774
No 41
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=94.83 E-value=0.094 Score=44.30 Aligned_cols=49 Identities=39% Similarity=0.668 Sum_probs=32.7
Q ss_pred HHHHHHhcC--cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 37 AAYKAVEFV--ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 37 IA~~Aa~lI--~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
++....+.+ +...+|+|.+|||...+.+.|.+....+..+++.++..+.
T Consensus 8 i~~~i~~~~~~~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DE 58 (169)
T cd00458 8 IEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDE 58 (169)
T ss_pred HHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECcc
Confidence 334444434 3456899999999999999997543222234678777766
No 42
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=94.61 E-value=0.3 Score=48.21 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=66.4
Q ss_pred cCcCCCEEEEC-----CChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHH-HH---hCCC------------------
Q 024953 44 FVESGMVLGLG-----TGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ-AV---SLGI------------------ 96 (260)
Q Consensus 44 lI~dg~~I~Lg-----sGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~-l~---~~gi------------------ 96 (260)
=++|||||-+- .=-.+..+.+.+.+. +++++|+.++|+.-++. +. +.|.
T Consensus 39 gl~dgmtisfhhh~r~gd~v~n~v~~~~~~~----g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~~~~is 114 (492)
T TIGR01584 39 GLKDGMTISFHHHFREGDYVVNMVMRIIADM----GFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTLGDEIS 114 (492)
T ss_pred CCcCCcEEEeeccccCccHHHHHHHHHHHHc----CcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchHHHHHh
Confidence 37999999863 334455555666643 45799999999854332 21 2221
Q ss_pred ------cEEE---------c-CCCccccEEEEccCcccCCCCcc--c--CcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953 97 ------PLSD---------L-DSYPVVDLAIDGADEVDPFMNLV--K--GRGGSLLREKMVEGACKKFVVIVDES 151 (260)
Q Consensus 97 ------~v~~---------l-~~~~~~D~af~GadgId~~~~~i--~--~~~~a~~kekii~~~A~~~IlLaD~s 151 (260)
+++. + ....++|+||+++.-.|..|++. . +.+...-.....+++|+++|+.+|.-
T Consensus 115 ~g~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg~~G~s~~gslgya~~dA~~A~kVIaevn~~ 189 (492)
T TIGR01584 115 KGILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDEMGNANGMTGKSPCGSLGYAIVDAQYADKVVAITDSL 189 (492)
T ss_pred cCCCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCcccCCCCcccCCCcccCccchhHHHHHhCCEEEEEECCC
Confidence 1111 1 13468999999999999988765 1 23334444455667899998888763
No 43
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=93.89 E-value=0.69 Score=43.46 Aligned_cols=129 Identities=20% Similarity=0.219 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCcCCCEEE--ECCCh-------hHHHHHHHHHhHHhcCCCCCEEEECCcH--------HHHHHHHhCCC
Q 024953 34 KKIAAYKAVEFVESGMVLG--LGTGS-------TAKHAVDRIGELLRQGKLTNIVGIPTSK--------KTHEQAVSLGI 96 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~--LgsGS-------T~~~la~~L~~~~~~~~l~~itvVTnSl--------~~a~~l~~~gi 96 (260)
-++|++.-++++++|+.|. ..+|+ |++-.++..... | +++.++...- -++-+|.+.|+
T Consensus 136 n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~---g--k~i~v~a~ETRP~lQGARLTawEL~~~GI 210 (346)
T COG0182 136 NRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEE---G--KDIRVFADETRPYLQGARLTAWELVQDGI 210 (346)
T ss_pred HHHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHC---C--CeeEEEeCCCccccccceeeHHHHhhcCC
Confidence 4568899999999999986 33343 355666666532 2 3688877544 46778888999
Q ss_pred cEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHH-HhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 97 PLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVE-GACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 97 ~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~-~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
++..+- ++-.+|.++.|||-|-.+|....--|.. ..++++ +.--.|++.+..|-|...+.. +-.+|||
T Consensus 211 pvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY--~lAvlAk~~gIPFyVaAP~sTiD~~~~~-G~~I~IE 287 (346)
T COG0182 211 PVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTY--QLAVLAKHHGIPFYVAAPLSTIDFELKS-GEDIPIE 287 (346)
T ss_pred ceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHH--HHHHHHHHcCCCeEEEcccCccccccCC-CCcccee
Confidence 887542 3346999999999999887543222221 123332 345678999999999655443 2468988
Q ss_pred Eec
Q 024953 168 VVP 170 (260)
Q Consensus 168 V~p 170 (260)
=.+
T Consensus 288 ER~ 290 (346)
T COG0182 288 ERD 290 (346)
T ss_pred ecC
Confidence 654
No 44
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=93.50 E-value=0.57 Score=40.55 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHhc-CC---CCCEEEECCc-H--H-HHH------------
Q 024953 33 LKKIAAYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLRQ-GK---LTNIVGIPTS-K--K-THE------------ 89 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~~-~~---l~~itvVTnS-l--~-~a~------------ 89 (260)
.|..=|++|+++|++||.|+.|. + ++...+.++|.++..+ .. ...+++.+.. + . ...
T Consensus 7 ~Kl~sa~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~ 86 (198)
T PF02550_consen 7 RKLVSAEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRH 86 (198)
T ss_dssp HHBE-HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEE
T ss_pred hhcCCHHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhccc
Confidence 34445899999999999999986 3 3455666777644321 00 0123332221 0 0 111
Q ss_pred ----------HHHhCC-CcEEE---------c-CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEE
Q 024953 90 ----------QAVSLG-IPLSD---------L-DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148 (260)
Q Consensus 90 ----------~l~~~g-i~v~~---------l-~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLa 148 (260)
.+.+.| ...+. + .....+|++++.+...|.+|.+..|.+....+ .++ +.|+.+|+-+
T Consensus 87 ~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~-~~i-e~A~~vI~eV 164 (198)
T PF02550_consen 87 NSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTK-AAI-EQAKKVIVEV 164 (198)
T ss_dssp EESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHH-HHH-HHTSEEEEEE
T ss_pred CcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHH-HHH-hcCCeEEEEc
Confidence 111122 11111 1 12234899999999999999888775543333 444 5688888877
Q ss_pred eC
Q 024953 149 DE 150 (260)
Q Consensus 149 D~ 150 (260)
..
T Consensus 165 N~ 166 (198)
T PF02550_consen 165 NP 166 (198)
T ss_dssp ET
T ss_pred CC
Confidence 63
No 45
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=92.27 E-value=0.7 Score=44.89 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=50.8
Q ss_pred cCcCCCEEEECC----C-hhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----HHHhCCC-----------------
Q 024953 44 FVESGMVLGLGT----G-STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----QAVSLGI----------------- 96 (260)
Q Consensus 44 lI~dg~~I~Lgs----G-ST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----~l~~~gi----------------- 96 (260)
=++|||||-+-- | -.+..+.+.+.+. +++++|+.++|+.-.+ ..+..-+
T Consensus 16 glkDGMTISFHHH~RnGD~V~nmVm~~i~~m----GiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS 91 (466)
T PF04223_consen 16 GLKDGMTISFHHHLRNGDYVLNMVMDEIAEM----GIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRGPLGEAIS 91 (466)
T ss_dssp T--TT-EEEE--TTGGGB-HHHHHHHHHHHT----T--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHH
T ss_pred CCcCCcEEEeehhccCccHHHHHHHHHHHHc----CCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHh
Confidence 369999998742 3 3444555666543 4569999999985432 2222211
Q ss_pred ------cEEEc----------CCCccccEEEEccCcccCCCCcccC--------cchhHHHHHHHHHhcCcEEEEEeC
Q 024953 97 ------PLSDL----------DSYPVVDLAIDGADEVDPFMNLVKG--------RGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 97 ------~v~~l----------~~~~~~D~af~GadgId~~~~~i~~--------~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
+++.- ....++|+||+||...|.-|++.-. .|.+..- ++.|+++|++.|.
T Consensus 92 ~G~l~~Pvi~rSHGGR~raIe~Ge~~IDVAFi~AP~~D~~GN~nG~~G~saCGsLGYa~~D----A~yA~~VV~iTD~ 165 (466)
T PF04223_consen 92 EGKLKKPVIIRSHGGRARAIESGELHIDVAFIAAPSCDEYGNANGVGGKSACGSLGYAMVD----AQYADKVVAITDN 165 (466)
T ss_dssp CT--SS-EEE-BHHHHHHHHHCTSS--SEEEEEESEEETTS-EESSSSSS--S--CCHHHH----HHH-SEEEEEESS
T ss_pred CCCCCCCEEEeCCCCchhheecCCcceEEEEEcCCccccccCcCCCcCCccccccccchhh----HHhcCcEEEEecC
Confidence 11110 1356999999999999987764311 1234443 4678999999986
No 46
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=91.87 E-value=0.81 Score=45.15 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCChHHHHHHH--HHHHHhcCcCCCEEEEC--CChhHHHHHHHHHhHHhcC-----CCCCEEEEC-CcHH--HHHHHHhC
Q 024953 27 ILTQDELKKIA--AYKAVEFVESGMVLGLG--TGSTAKHAVDRIGELLRQG-----KLTNIVGIP-TSKK--THEQAVSL 94 (260)
Q Consensus 27 m~~~~~~K~~I--A~~Aa~lI~dg~~I~Lg--sGST~~~la~~L~~~~~~~-----~l~~itvVT-nSl~--~a~~l~~~ 94 (260)
|...+..++.+ +.+|+.+|++||+|+++ .+.+...+.++|+++.+.. .+ .++.++ -|.. .-..+...
T Consensus 6 ~~~~~~~~k~~~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l-~i~~~~gas~~~~~~~~~~~a 84 (501)
T COG0427 6 MRLRELYKKKLITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDL-RVLLFTGASIGADEDLKLAEA 84 (501)
T ss_pred hhhHHHhhhhcCCHHHHHHhhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCce-EEEEEeccccCcchhhhhhcc
Confidence 33344444444 89999999999999998 4457778888888764221 23 233333 3332 22222221
Q ss_pred C----------------------CcEE---------EcCC-Cc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhc
Q 024953 95 G----------------------IPLS---------DLDS-YP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC 141 (260)
Q Consensus 95 g----------------------i~v~---------~l~~-~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A 141 (260)
| .... .+.+ .. .+|++++-+..++.+|.++.+.+-...++ ....|
T Consensus 85 ~~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g~svg~~~~--~~~~A 162 (501)
T COG0427 85 GEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPGTSVGNSKS--WAEGA 162 (501)
T ss_pred cchhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccCCceEeeccccCCcHH--HHhhc
Confidence 1 1000 0111 12 48999999999999998877765555554 33568
Q ss_pred CcEEEEEeC
Q 024953 142 KKFVVIVDE 150 (260)
Q Consensus 142 ~~~IlLaD~ 150 (260)
+++|+-+..
T Consensus 163 ~kVIveVN~ 171 (501)
T COG0427 163 EKVIVEVNK 171 (501)
T ss_pred cEEEEEhhc
Confidence 888776643
No 47
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=91.46 E-value=0.25 Score=46.16 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 32 ELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 32 ~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
+..+++|+.|++ ++++|++|+++-|+|+..+++++.... ..+++++|+
T Consensus 96 ~~~~~vg~~aA~~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~~---~~~~~~vV~ 147 (318)
T PRK15418 96 DIGGRLGIGAAHMLMSLLQPQQLLAVGFGEATMNTLQHLSGFI---SSQQIRLVT 147 (318)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCEEEEcchHHHHHHHHhccccC---CCCCCEEEE
Confidence 345678888876 558999999999999999999986311 113677775
No 48
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=88.45 E-value=1.5 Score=42.01 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=61.5
Q ss_pred CcCCCEEEE-----CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHH-H---HhCCC-------------------
Q 024953 45 VESGMVLGL-----GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ-A---VSLGI------------------- 96 (260)
Q Consensus 45 I~dg~~I~L-----gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~-l---~~~gi------------------- 96 (260)
++|||+|-+ |.-.++..+.+.+++. +++|+|+-++|+.-... + .+.|+
T Consensus 62 lkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m----GfKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~lg~~IS~ 137 (513)
T COG3051 62 LKDGMTISFHHAFRGGDLVVNMVMDVIAKM----GFKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPLGEEISR 137 (513)
T ss_pred ccCCeEEEeeehhcCCceeHHHHHHHHHHh----CccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchHHHHHhh
Confidence 799999976 5566777777777754 45699999999864321 1 11221
Q ss_pred -----cEE---------Ec-CCCccccEEEEccCcccCCCCc----ccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 97 -----PLS---------DL-DSYPVVDLAIDGADEVDPFMNL----VKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 97 -----~v~---------~l-~~~~~~D~af~GadgId~~~~~----i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
++. .+ ....++|+||+|+-..|.-|++ =|..-+.+=.-.+=++.|+++++|.|+
T Consensus 138 Gll~~PV~i~SHGGRv~~i~sGel~IDvAFlgvP~cDe~GNaNG~~GKa~cGSlGYA~vDA~yAd~VV~lTe~ 210 (513)
T COG3051 138 GLLAEPVQIHSHGGRVHLVQSGELHIDVAFLGVPSCDEFGNANGFTGKACCGSLGYAMVDAQYADQVVMLTEE 210 (513)
T ss_pred hHhhCCeEEeccCceEEEeecCceeEEEEEecCCChhhhcCcCCCcCccccccccceeechhhcceEEEehhh
Confidence 111 11 1347999999998887764332 122222222222235778999888875
No 49
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=87.13 E-value=0.98 Score=33.66 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred cccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccc
Q 024953 163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD 242 (260)
Q Consensus 163 ~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~ 242 (260)
.+=|.+.|..+..+.+.|..+ .|.+. ...+++|++|+=+--.. ..+..+.-+.|+.+|||....+-..
T Consensus 7 s~vV~~~p~~~~~v~~~l~~~---~gvEV--------h~~~~~GKiVVtiE~~~-~~~~~~~~~~i~~l~GVlsa~lvYh 74 (79)
T PF03927_consen 7 SLVVHARPERLEEVAEALAAI---PGVEV--------HAVDEDGKIVVTIEAES-SEEEVDLIDAINALPGVLSASLVYH 74 (79)
T ss_dssp EEEEEE-CCCHHHHHHHHCCS---TTEEE--------EEEETTTEEEEEEEESS-HHHHHHHHHHHCCSTTEEEEEESSE
T ss_pred EEEEEECchhHHHHHHHHHcC---CCcEE--------EeeCCCCeEEEEEEeCC-hHHHHHHHHHHHcCCCceEEEEEEE
Confidence 355778899999999999997 35543 34466788887554332 4556777778999999999887654
Q ss_pred c
Q 024953 243 M 243 (260)
Q Consensus 243 ~ 243 (260)
.
T Consensus 75 ~ 75 (79)
T PF03927_consen 75 Y 75 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=85.32 E-value=4.5 Score=39.46 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHh------cCcCCCEEEECCChhHHHHHHHHHhHHhc
Q 024953 30 QDELKKIAAYKAVE------FVESGMVLGLGTGSTAKHAVDRIGELLRQ 72 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~------lI~dg~~I~LgsGST~~~la~~L~~~~~~ 72 (260)
.......||+.|++ |++||-+.--|+|-+.+.++++|.+..++
T Consensus 205 ~~P~~L~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~ 253 (466)
T PF04223_consen 205 KDPRELLIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMRE 253 (466)
T ss_dssp --HHHHHHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHH
Confidence 34556778888887 56999999999999999999999987654
No 51
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=83.20 E-value=2.5 Score=29.70 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred EEEecCc--HHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHH-hcCCCcEEee
Q 024953 166 VEVVPYC--WKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDN-ILRLAGVVEH 237 (260)
Q Consensus 166 vEV~p~~--~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~-l~~i~GVve~ 237 (260)
|++.|-. +..+.+.|.++ ++++. -..+|-..++++-+.+.. ..+..++-.. |..+|||..+
T Consensus 3 V~~~~~~~~~~~~~~~l~~~-------p~V~~---~~~vtG~~d~~~~v~~~d-~~~l~~~i~~~l~~~~gV~~~ 66 (74)
T PF01037_consen 3 VKVEPGHDAYDEFAEALAEI-------PEVVE---CYSVTGEYDLILKVRARD-MEELEEFIREKLRSIPGVRRT 66 (74)
T ss_dssp EEESTTGTHHHHHHHHHHTS-------TTEEE---EEEESSSSSEEEEEEESS-HHHHHHHHHHTHHTSTTEEEE
T ss_pred EEEcCCCchHHHHHHHHHcC-------CCEEE---EEEEeCCCCEEEEEEECC-HHHHHHHHHHHhhcCCCEEEE
Confidence 5566766 77777777775 33332 245566779999999864 5555555555 9999999875
No 52
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=81.13 E-value=13 Score=37.26 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHhcCcCCCEEEECCC--hhHHHHHHHHHhHHhcCCCCCEEEECC--cHHHHHHHHhCCC----------------
Q 024953 37 AAYKAVEFVESGMVLGLGTG--STAKHAVDRIGELLRQGKLTNIVGIPT--SKKTHEQAVSLGI---------------- 96 (260)
Q Consensus 37 IA~~Aa~lI~dg~~I~LgsG--ST~~~la~~L~~~~~~~~l~~itvVTn--Sl~~a~~l~~~gi---------------- 96 (260)
+......+|+|||+|.|..= --...+++.|.+-. ....++++.|-. +......+...|+
T Consensus 30 ~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~-~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~ 108 (543)
T TIGR01110 30 GVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCD-PEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRI 108 (543)
T ss_pred HHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhC-ccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHH
Confidence 44555678999999999644 34555666554322 122346777665 3333333433332
Q ss_pred ---------cEEEcC----------CCccccEEEEccCcccCCCCcccCc
Q 024953 97 ---------PLSDLD----------SYPVVDLAIDGADEVDPFMNLVKGR 127 (260)
Q Consensus 97 ---------~v~~l~----------~~~~~D~af~GadgId~~~~~i~~~ 127 (260)
.+..+. ...++|++++-+.-.|.+|++..|.
T Consensus 109 ~~av~~G~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~slG~ 158 (543)
T TIGR01110 109 AQLLEDGKLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLYTGP 158 (543)
T ss_pred HHHHHcCCeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEEecC
Confidence 111110 1346899999999999999886543
No 53
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=81.07 E-value=2.7 Score=41.60 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhHHh
Q 024953 32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGELLR 71 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~~~ 71 (260)
+..++||+.++++| +||.++=+|.|.....++++|.++.+
T Consensus 230 p~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mk 275 (492)
T TIGR01584 230 PKELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMI 275 (492)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHH
Confidence 55688999999998 89999999999999999999987643
No 54
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=80.42 E-value=3.4 Score=35.89 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHhcCcCCCEEEEC----CChhHHHHHHHHHhH
Q 024953 37 AAYKAVEFVESGMVLGLG----TGSTAKHAVDRIGEL 69 (260)
Q Consensus 37 IA~~Aa~lI~dg~~I~Lg----sGST~~~la~~L~~~ 69 (260)
++++++++|+|||+|++| +| +-..++.+|.++
T Consensus 4 ~~eAva~~I~dG~~v~~GG~~~~~-~P~al~~~l~r~ 39 (217)
T PF01144_consen 4 LAEAVARLIRDGDTVAVGGFGSSG-IPMALVRELARQ 39 (217)
T ss_dssp HHHHHTCT--TTEEEEE-SBTTBT-HHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCEEEECCCcccC-cHHHHHHHHHhc
Confidence 344455599999999999 66 445677777654
No 55
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=77.19 E-value=18 Score=35.98 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCcCCCEEEECCCh---hHHHHHHHHHhHHhc-CCCCCEEEEC
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQ-GKLTNIVGIP 82 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGS---T~~~la~~L~~~~~~-~~l~~itvVT 82 (260)
|..=|+.|+.+|+||++|.+++-+ .-.+++++|.++... +.=+++|++-
T Consensus 4 K~isa~ea~~~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~ 56 (527)
T COG4670 4 KVISAQEAAALIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFIS 56 (527)
T ss_pred ccccHHHHHhhCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEc
Confidence 556689999999999999986544 345677777665421 1113666654
No 56
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=77.05 E-value=6.9 Score=29.81 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=50.1
Q ss_pred cccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceE-eCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc
Q 024953 163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFV-TDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL 241 (260)
Q Consensus 163 ~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~v-Td~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~ 241 (260)
.+-|.+.|.....+.+.|..+ .|++.- .. +++|.+|+=+--.. ..+.-+.-..|+.+|||+...|-+
T Consensus 9 SlVV~~~Pe~~~~V~~~l~~i---pg~Evh--------~~d~~~GKiVVtiE~~~-~~~~~~~i~~I~~l~GVlsa~lVY 76 (87)
T PRK10553 9 SLVVQAKSERISDISTQLNAF---PGCEVA--------VSDAPSGQLIVVVEAED-SETLLQTIESVRNVEGVLAVSLVY 76 (87)
T ss_pred EEEEEeChHHHHHHHHHHHcC---CCcEEE--------eecCCCCeEEEEEEeCC-hHHHHHHHHHHHcCCCceEEEEEE
Confidence 466777899999999999987 465543 22 35788887665332 556667777899999999988876
Q ss_pred cc
Q 024953 242 DM 243 (260)
Q Consensus 242 ~~ 243 (260)
+.
T Consensus 77 h~ 78 (87)
T PRK10553 77 HQ 78 (87)
T ss_pred EE
Confidence 43
No 57
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=71.85 E-value=8.8 Score=38.12 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhcCc----CC------CEEEECCChhHHHHHHHHHhH
Q 024953 18 SPLSSPPPVILTQDELKKIAAYKAVEFVE----SG------MVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 18 ~~~~~~~~~m~~~~~~K~~IA~~Aa~lI~----dg------~~I~LgsGST~~~la~~L~~~ 69 (260)
.|+...|+...+ +.-++||+..+++|+ || ++|=+|-|+.-..++..|.++
T Consensus 211 ~pl~~~~~~~~~--~~~~~Ia~~va~~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~ 270 (485)
T TIGR03458 211 APDRNSPFTPPD--EVSQKIAGHLIDFLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDS 270 (485)
T ss_pred CCCccCCCCCcC--HHHHHHHHHHHHHHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcC
Confidence 344444443332 445789999999976 88 999999999999999999754
No 58
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=69.07 E-value=10 Score=31.26 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=49.8
Q ss_pred EEEEEeCCCcccCCCCCCccccEEEe-cCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHH
Q 024953 144 FVVIVDESKLVPHLGGSGLAMPVEVV-PYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 222 (260)
Q Consensus 144 ~IlLaD~sKf~~~lg~~~~~lPvEV~-p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~ 222 (260)
+.++.|..|++.... .-+=+.+. +..+..+.+.|.+. ++++. -..+|-.-|+++.+.+.. ..+..
T Consensus 56 ~~~~v~~~~lg~~~~---a~v~v~v~~~~~~~~~~~~l~~~-------p~V~~---~~~~tG~~dl~~~v~~~d-~~~l~ 121 (153)
T PRK11179 56 TRVDVNPKQLGYDVC---CFIGIILKSAKDYPSALAKLESL-------DEVVE---AYYTTGHYSIFIKVMCRS-IDALQ 121 (153)
T ss_pred EEEEECHHHcCCCEE---EEEEEEEcccccHHHHHHHHhCC-------CCEEE---EEEcccCCCEEEEEEECC-HHHHH
Confidence 446788888753321 11223332 44566666666664 34442 134455669999999874 66677
Q ss_pred HH-HHHhcCCCcEEeec
Q 024953 223 VA-SDNILRLAGVVEHG 238 (260)
Q Consensus 223 ~l-~~~l~~i~GVve~G 238 (260)
++ .+.|..+|||..+-
T Consensus 122 ~~~~~~l~~~~gV~~~~ 138 (153)
T PRK11179 122 HVLINKIQTIDEIQSTE 138 (153)
T ss_pred HHHHHHhhcCCCeeeEE
Confidence 65 46788999999643
No 59
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=68.47 E-value=54 Score=32.02 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=58.5
Q ss_pred HHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHH-HhCCCcEEEcCC----CccccEE
Q 024953 36 IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA-VSLGIPLSDLDS----YPVVDLA 110 (260)
Q Consensus 36 ~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l-~~~gi~v~~l~~----~~~~D~a 110 (260)
.+|++-..-+++-.+++||.|-+....|++|... +..+++++-=...-+..+ .+.+..+..+++ ....|+.
T Consensus 167 ~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~----g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 167 ELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEK----GVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVV 242 (414)
T ss_pred HHHHHHhcccccCeEEEEcccHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEE
Confidence 3455555556677799999999999999999864 224788888888777655 567766666542 2379999
Q ss_pred EEccCcccC
Q 024953 111 IDGADEVDP 119 (260)
Q Consensus 111 f~GadgId~ 119 (260)
|.++.+-++
T Consensus 243 issTsa~~~ 251 (414)
T COG0373 243 ISSTSAPHP 251 (414)
T ss_pred EEecCCCcc
Confidence 998877654
No 60
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=65.38 E-value=12 Score=26.97 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=38.9
Q ss_pred ccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEe--CCCCEEEEeeCCC-CCCCHHHHHHHhcCCCcEEee
Q 024953 162 LAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVT--DNGNYVIDLYLKK-DIGDLKVASDNILRLAGVVEH 237 (260)
Q Consensus 162 ~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vT--d~GN~IiD~~f~~-~~~~~~~l~~~l~~i~GVve~ 237 (260)
|++.++|.-....-+...+...+.+.|.. ++.- -..+ ++|...+++.+.- .......+-+.|+++|||.+.
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~n--I~~i---~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVN--IRSI---NARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISV 78 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSE--EEEE---EEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCC--eEEE---EeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEE
Confidence 77777776655555556666665545653 3210 0111 2555555554430 133455666789999999863
No 61
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.91 E-value=22 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred EEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 50 ~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
+|.+|.|.....+++.|.+.. .++++|..+......+...+..++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-----~~vvvid~d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-----IDVVVIDRDPERVEELREEGVEVIY 46 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-----SEEEEEESSHHHHHHHHHTTSEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC-----CEEEEEECCcHHHHHHHhccccccc
Confidence 478999999999999998641 2699999999999988888877654
No 62
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=60.92 E-value=2.7 Score=36.14 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcC----CCccccEEEEc
Q 024953 54 GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLD----SYPVVDLAIDG 113 (260)
Q Consensus 54 gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~----~~~~~D~af~G 113 (260)
|||+|+ +++.|+++. ++..|....--.+.+++.|+.+..++ .++++|+.+|.
T Consensus 10 GsG~TT--va~~lAe~~------gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~ 65 (179)
T COG1102 10 GSGKTT--VARELAEHL------GLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDR 65 (179)
T ss_pred CCChhH--HHHHHHHHh------CCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHH
Confidence 788887 678888764 68888877766777788898876553 45677776654
No 63
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=57.64 E-value=12 Score=32.54 Aligned_cols=35 Identities=37% Similarity=0.418 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCcC--CCEEEECCChhHHHHHHHHHhH
Q 024953 35 KIAAYKAVEFVES--GMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 35 ~~IA~~Aa~lI~d--g~~I~LgsGST~~~la~~L~~~ 69 (260)
+.+|+...+.|++ +.+|+|..|+|...+.+.|...
T Consensus 5 ~~~a~~l~~~i~~~~~~~i~lsgG~T~~~~~~~l~~~ 41 (232)
T cd01399 5 EAAAELIAELIREKPPAVLGLATGSTPLGVYEELIEL 41 (232)
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Confidence 3456666667777 7899999999999999999753
No 64
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=54.79 E-value=33 Score=28.58 Aligned_cols=84 Identities=13% Similarity=0.274 Sum_probs=49.5
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEec---CcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCC
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVP---YCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIG 219 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p---~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~ 219 (260)
++..+.|..|++.... .-+=|++.+ ..+..+.+.|.++ ++++. -..+|-..++++-+.+.. ..
T Consensus 60 ~~~~~v~p~~lg~~~~---a~v~i~~~~~~~~~~~~~~~~l~~~-------p~V~~---~~~vtG~~d~~l~v~~~~-~~ 125 (164)
T PRK11169 60 GYTALLNPHYLDASLL---VFVEITLNRGAPDVFEQFNAAVQKL-------EEIQE---CHLVSGDFDYLLKTRVPD-MS 125 (164)
T ss_pred EEEEEECHHHhCCCEE---EEEEEEEcCCChHHHHHHHHHHhcC-------cceee---eeeecCCCCEEEEEEECC-HH
Confidence 4567788888743221 112233322 2244455555553 34442 245666789999999874 66
Q ss_pred CHHHHH-HHhcCCCcEEeeccc
Q 024953 220 DLKVAS-DNILRLAGVVEHGMF 240 (260)
Q Consensus 220 ~~~~l~-~~l~~i~GVve~GlF 240 (260)
+..++- +.|..+|||..+--+
T Consensus 126 ~l~~~l~~~l~~~~gV~~~~t~ 147 (164)
T PRK11169 126 AYRKLLGETLLRLPGVNDTRTY 147 (164)
T ss_pred HHHHHHHHHhhcCCCeeeEEEE
Confidence 666644 678899999875433
No 65
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=54.53 E-value=2.6 Score=30.57 Aligned_cols=28 Identities=32% Similarity=0.285 Sum_probs=21.1
Q ss_pred HHHHHHHHH-hcCcCCCEEEECCChhHHH
Q 024953 34 KKIAAYKAV-EFVESGMVLGLGTGSTAKH 61 (260)
Q Consensus 34 K~~IA~~Aa-~lI~dg~~I~LgsGST~~~ 61 (260)
|.+-+++++ ++|.+|-..+-.||||+++
T Consensus 33 k~R~vKKi~~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 33 KPREVKKIVNELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHhhCeEEEEcCCCcEEe
Confidence 444445554 6999999999999999854
No 66
>KOG2828 consensus Acetyl-CoA hydrolase [Energy production and conversion]
Probab=53.86 E-value=22 Score=34.45 Aligned_cols=111 Identities=19% Similarity=0.130 Sum_probs=69.4
Q ss_pred HHHHHhcCcCCCEEEECC-ChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH--------HHHHHh--------------C
Q 024953 38 AYKAVEFVESGMVLGLGT-GSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT--------HEQAVS--------------L 94 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~Lgs-GST~~~la~~L~~~~~~~~l~~itvVTnSl~~--------a~~l~~--------------~ 94 (260)
..+|..+|+.++.+|+|. -+|-..|++.+.++..+++|..++++--|..- ....++ .
T Consensus 29 ~~ea~~~vks~~f~~vg~~aa~PnaLl~a~~~~~~s~nLn~~~~~h~~~~g~e~~~pe~~~~iq~ns~fvg~~irK~Vn~ 108 (454)
T KOG2828|consen 29 LFEAGAYVKSSGFTGVGGPAATPNALLEAVEKNNLSGNLNFILFVHASLGGEENAWPEYDMIIQRNSHFVGKPIRKAVNL 108 (454)
T ss_pred hhhcccccccCCceeecccccCcHHHHHHHHHhccccccceeEEeeeccCCccccChhhhhhhhcCccccCcchHHHhhc
Confidence 456788999999999864 57778899999876555666555555544422 111111 1
Q ss_pred CC-----------cEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 95 GI-----------PLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 95 gi-----------~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
|. +.......+.+|.+|+-+.-.|.+|....|-.-.-.++.+ ..|+++|..+..
T Consensus 109 Gradf~pifLsevP~l~t~G~~~~d~alI~vSppde~Gfc~lG~sVdts~aa~--t~skkIIa~VNt 173 (454)
T KOG2828|consen 109 GRADFFPIFLSEVPQLLTYGTYTLDFALIEVSPPDEDGFCVLGTSVDTSPAAA--TNSKKIIAEVNT 173 (454)
T ss_pred CccccchhHHHhchHHHhcceeeceeEEEEecCCccCCceeccCCccchHHHH--hccchheehhcc
Confidence 10 1111124568999999999999988776664433344333 457887776654
No 67
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=53.62 E-value=56 Score=31.68 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=56.5
Q ss_pred HHHHHHHHHh------cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCC---CEEEECCcHHHHH--HHHhCCCcE----
Q 024953 34 KKIAAYKAVE------FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLT---NIVGIPTSKKTHE--QAVSLGIPL---- 98 (260)
Q Consensus 34 K~~IA~~Aa~------lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~---~itvVTnSl~~a~--~l~~~gi~v---- 98 (260)
...||+.|++ |.++|-+.--|+|-..+.+.+.|.++.++.+++ .+-.||+.+--.. .|...=+.+
T Consensus 254 eLlIA~~aa~VI~~SgYFkdGFs~QTGtGGAsLaVtrfl~ekM~~~nI~AsfaLGGIT~~mVdLhE~gLi~kllDvQsFD 333 (513)
T COG3051 254 ELLIARSAADVIVNSGYFKDGFSMQTGTGGASLAVTRFLEEKMRRRNIKASFALGGITATMVDLHEEGLIDKLLDVQSFD 333 (513)
T ss_pred HHHHHHHHhhhhhcCCcccCceeeecCCCchhHHHHHHHHHHHHhhccceeeecccchHHHHHHHHHHHHHHHhcccccC
Confidence 4679999998 558999999999999999999998765432211 2233565542211 111100001
Q ss_pred ---------------EEcC----------CCccccEEEEccCcccCCCC
Q 024953 99 ---------------SDLD----------SYPVVDLAIDGADEVDPFMN 122 (260)
Q Consensus 99 ---------------~~l~----------~~~~~D~af~GadgId~~~~ 122 (260)
++-+ ...+.|+++++|-+||.+++
T Consensus 334 ~~aa~Sla~np~h~EIsAn~YAnp~skGa~vdrLdvviLSALEiDt~FN 382 (513)
T COG3051 334 SDAAQSLARNPNHIEISANQYANPGSKGASVDRLDVVILSALEIDTQFN 382 (513)
T ss_pred cHHHHHHhcCCccEEechhhhcCCCCCCceeceeeEEEEEeeeeccccc
Confidence 1100 23589999999999998875
No 68
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=53.61 E-value=72 Score=27.94 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=43.4
Q ss_pred HHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcC--------CCccccEEE
Q 024953 41 AVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLD--------SYPVVDLAI 111 (260)
Q Consensus 41 Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~--------~~~~~D~af 111 (260)
-+++|++|..|. ||+|.=. +.++|.+.. .. ....|-.+..-...|...|++++..+ ....||.++
T Consensus 7 I~~~I~pgsrVLDLGCGdG~--LL~~L~~~k---~v-~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 7 IAEWIEPGSRVLDLGCGDGE--LLAYLKDEK---QV-DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred HHHHcCCCCEEEecCCCchH--HHHHHHHhc---CC-eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEe
Confidence 457999998665 8888543 446676531 11 35667777777777888899988543 123566666
Q ss_pred Ec
Q 024953 112 DG 113 (260)
Q Consensus 112 ~G 113 (260)
++
T Consensus 81 ls 82 (193)
T PF07021_consen 81 LS 82 (193)
T ss_pred hH
Confidence 54
No 69
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=53.01 E-value=46 Score=30.82 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=30.0
Q ss_pred cCcCCCEE---EECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHH
Q 024953 44 FVESGMVL---GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91 (260)
Q Consensus 44 lI~dg~~I---~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l 91 (260)
-+++||+| |.|-|+++.++|++-.. +++.||.|.+-...+
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v--------~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV--------TVVGVTLSEEQLAYA 111 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC--------EEEEeeCCHHHHHHH
Confidence 56999984 56778888888876521 689999998765544
No 70
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=52.63 E-value=35 Score=28.66 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEE----CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCC
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGL----GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSY 104 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~L----gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~ 104 (260)
..+++..++|+.-++.++.|++|.| |+|-|+ |+|.|.+.+. . +-.|.+..+.+.+.-...+.+ .
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTt--f~rgi~~~Lg---~-~~~V~SPTFtlv~~Y~~~~~~------l 73 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAGKTT--LVRGIAKGLG---V-DGNVKSPTFTLVEEYEEGRLP------L 73 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHH--HHHHHHHHcC---C-CCcccCCCeeeehhhcCCCCc------E
Confidence 3456788899999999999999995 899997 4566654321 0 234556666555444333333 3
Q ss_pred ccccEEEEc-cCccc
Q 024953 105 PVVDLAIDG-ADEVD 118 (260)
Q Consensus 105 ~~~D~af~G-adgId 118 (260)
+|+|+|=++ ..+++
T Consensus 74 yH~DlYRl~d~ee~~ 88 (149)
T COG0802 74 YHFDLYRLSDPEELD 88 (149)
T ss_pred EEEeeeccCChHHhH
Confidence 577777666 33343
No 71
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=52.29 E-value=22 Score=31.57 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.2
Q ss_pred CCCEEEECCChhHHHHHHHHHh
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~ 68 (260)
++++|+|..|+|...+.+.|.+
T Consensus 33 ~~~~iglsgG~T~~~~~~~L~~ 54 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKALIE 54 (261)
T ss_pred CceEEEecCCCCHHHHHHHHHH
Confidence 6788999999999999999984
No 72
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=51.19 E-value=38 Score=27.17 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=50.7
Q ss_pred HHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hC---CCcEEEcCCC----cccc
Q 024953 37 AAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SL---GIPLSDLDSY----PVVD 108 (260)
Q Consensus 37 IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~---gi~v~~l~~~----~~~D 108 (260)
.|++...-++...++.||+|-+...++.+|... +.++++++.-+..-+..+. .. ++....+.+. ..+|
T Consensus 2 la~~~~~~l~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 2 LAKKKFGDLKGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp HHCTHHSTGTTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTES
T ss_pred hhHHhcCCcCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCC
Confidence 355566667888899999999999999999864 2236999988877665553 32 3445555432 2577
Q ss_pred EEEEccC
Q 024953 109 LAIDGAD 115 (260)
Q Consensus 109 ~af~Gad 115 (260)
+.|-.+.
T Consensus 78 ivI~aT~ 84 (135)
T PF01488_consen 78 IVINATP 84 (135)
T ss_dssp EEEE-SS
T ss_pred eEEEecC
Confidence 6665543
No 73
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=49.13 E-value=67 Score=28.76 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcCC-CEEEECCChh---------------HHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcE
Q 024953 35 KIAAYKAVEFVESG-MVLGLGTGST---------------AKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPL 98 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg-~~I~LgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v 98 (260)
..+.++|.+++++| +.|=+|.+|| +..+++.|.+.. .. .+.+=|.+..++..+.+.+.++
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~---~~-piSIDT~~~~v~~aaL~~g~~i 99 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP---DV-PISVDTFNAEVAEAALKAGADI 99 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC---CC-eEEEeCCcHHHHHHHHHhCCCE
Confidence 55678899999998 6777999999 445555554321 22 4788888888888776666443
No 74
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=45.84 E-value=47 Score=27.75 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=53.4
Q ss_pred EECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHH---H-HHHHHhCCCcEEEcC--------------------CCc--
Q 024953 52 GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK---T-HEQAVSLGIPLSDLD--------------------SYP-- 105 (260)
Q Consensus 52 ~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~---~-a~~l~~~gi~v~~l~--------------------~~~-- 105 (260)
|||||-|+. ++.|.+.. ... .++-++.|.+- + ...+.+.+.++..+. ..+
T Consensus 8 fLGsGKTTl--i~~ll~~~-~~~-~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~ 83 (178)
T PF02492_consen 8 FLGSGKTTL--INHLLKRN-RQG-ERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEE 83 (178)
T ss_dssp STTSSHHHH--HHHHHHHH-TTT-S-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHG
T ss_pred CCCCCHHHH--HHHHHHHh-cCC-ceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCC
Confidence 589999985 34444221 122 26889998874 2 344566676666542 345
Q ss_pred cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc
Q 024953 106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV 154 (260)
Q Consensus 106 ~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~ 154 (260)
++|..|+=+.|...-..+.. .+..+++. + .-..+|.++|...|.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~--~~~~~~~~-~--~~~~iI~vVDa~~~~ 127 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLIL--QDPPLKED-F--RLDSIITVVDATNFD 127 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHH--HSHHHHHH-E--SESEEEEEEEGTTHG
T ss_pred CcCEEEECCccccccchhhh--cccccccc-c--cccceeEEecccccc
Confidence 79999998888642222210 03333322 1 246789999998883
No 75
>PRK10646 ADP-binding protein; Provisional
Probab=45.70 E-value=51 Score=27.67 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEE----CCChhHHHHHHHHHhH
Q 024953 30 QDELKKIAAYKAVEFVESGMVLGL----GTGSTAKHAVDRIGEL 69 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~L----gsGST~~~la~~L~~~ 69 (260)
..++=+++|++-++.+++|++|.| |+|-|+ |+|.|.+.
T Consensus 10 s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTt--f~rgl~~~ 51 (153)
T PRK10646 10 DEQATLDLGARVAKACDGATVIYLYGDLGAGKTT--FSRGFLQA 51 (153)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHH--HHHHHHHH
Confidence 344566788888999999999985 899997 55666543
No 76
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=40.41 E-value=34 Score=27.64 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCcCCCEEEE----CCChhHHHHHHHHHhH
Q 024953 35 KIAAYKAVEFVESGMVLGL----GTGSTAKHAVDRIGEL 69 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg~~I~L----gsGST~~~la~~L~~~ 69 (260)
+++|+.-++.+++|++|.| |+|-|+ |++.+.+.
T Consensus 2 ~~la~~l~~~l~~g~vi~L~GdLGaGKTt--f~r~l~~~ 38 (123)
T PF02367_consen 2 IRLAKKLAQILKPGDVILLSGDLGAGKTT--FVRGLARA 38 (123)
T ss_dssp HHHHHHHHHHHSS-EEEEEEESTTSSHHH--HHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHH--HHHHHHHH
Confidence 4578888888899999986 899997 55666644
No 77
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=40.40 E-value=59 Score=32.78 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCcCCC---EEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFVESGM---VLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~---~I~LgsGST~~~la~~L~~~ 69 (260)
+..+.||+.++++|.+|. ++=+|-|.....+...|+.+
T Consensus 223 e~~~~ia~~v~~~I~dg~~v~tLq~GIG~~p~AI~~~L~~~ 263 (543)
T TIGR01110 223 DVQVLMAMMAIKGIYAEYQVQRLNHGIGFNTAAIELLLPTY 263 (543)
T ss_pred HHHHHHHHHHHhhCcCCCcCceeeeccCcCHHHHHHHhccc
Confidence 556889999999999999 99999999999999999865
No 78
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=36.41 E-value=1.3e+02 Score=27.44 Aligned_cols=40 Identities=33% Similarity=0.403 Sum_probs=24.0
Q ss_pred cCcCCCEE---EECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHH
Q 024953 44 FVESGMVL---GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91 (260)
Q Consensus 44 lI~dg~~I---~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l 91 (260)
-+++|+.| |-|-|+++.++++.-.- +++.||.|..-...+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~--------~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGC--------HVTGITLSEEQAEYA 101 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHH
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCc--------EEEEEECCHHHHHHH
Confidence 47999964 45667777777776531 699999999766554
No 79
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=36.29 E-value=76 Score=27.67 Aligned_cols=47 Identities=6% Similarity=-0.177 Sum_probs=34.4
Q ss_pred CEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCC
Q 024953 49 MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLG 95 (260)
Q Consensus 49 ~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~g 95 (260)
|.|.+-|++|+..|.+.+........+.+++++.-|..++..+...+
T Consensus 172 d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~ 218 (240)
T PRK09189 172 DAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASL 218 (240)
T ss_pred CEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhcc
Confidence 89999999999999998863210011235778888999998887654
No 80
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.97 E-value=58 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.8
Q ss_pred EEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 50 ~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
++.+|+|-+..++|..|.+.- .++|++..+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g-----~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELG-----KEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTT-----SEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHhC-----cEEEEEeccc
Confidence 578999999999999998652 2688887654
No 81
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=34.70 E-value=80 Score=25.73 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=42.3
Q ss_pred cCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEE
Q 024953 141 CKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYV 209 (260)
Q Consensus 141 A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~I 209 (260)
..-.|+++|-+-+. + .|..+..|.++|++...+.|+.. .+.+++.-.||+||=-|
T Consensus 62 y~GNIvIaDit~l~-~------------d~~~~~~V~e~lr~~a~~~ggdi-~~l~~n~viITP~~IkI 116 (124)
T COG2450 62 YAGNIVIADITPLE-R------------DDDLFERVIEELRDTAEEVGGDI-AKLGDNVVIITPNGIKI 116 (124)
T ss_pred hcCCEEEEEcCCcc-c------------ChhHHHHHHHHHHHHHHHhCchh-hhhcCCEEEECCCCceE
Confidence 34589999988772 1 46778999999999887777764 45567788999998655
No 82
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=34.43 E-value=68 Score=28.41 Aligned_cols=50 Identities=20% Similarity=0.109 Sum_probs=38.3
Q ss_pred CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEE
Q 024953 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~ 99 (260)
=|.|.+-|++++..|++.++... ..+.++.++.-|..++..+++.|+...
T Consensus 183 ~d~v~ftS~~~~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~a~~~~G~~~~ 232 (255)
T PRK05752 183 LNGLVVSSGQGFEHLQQLAGADW--PELARLPLFVPSPRVAEQARAAGAQTV 232 (255)
T ss_pred CCEEEECCHHHHHHHHHHhChhH--HHhcCceEEEeCHHHHHHHHHcCCCce
Confidence 38899999999999998875321 012357788889999999999998655
No 83
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.50 E-value=1.5e+02 Score=20.40 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHhhhhCCCceE-EeecCCCceEeCCCCEEEEeeC--CCCCC-CHHHHHHHhcCCCcEEeec
Q 024953 170 PYCWKFTAKRLQDLFEDCGCVAK-LRTTGEQPFVTDNGNYVIDLYL--KKDIG-DLKVASDNILRLAGVVEHG 238 (260)
Q Consensus 170 p~~~~~v~~~l~~~~~~~g~~~~-~R~~~~~p~vTd~GN~IiD~~f--~~~~~-~~~~l~~~l~~i~GVve~G 238 (260)
|..+..+.+.|.+. |.... +... ..++|..-+.+.+ .. .. ...++-+.|+++|||.+.-
T Consensus 11 ~g~l~~I~~~la~~----~inI~~i~~~-----~~~~~~~~i~~~v~v~~-~~~~l~~l~~~L~~i~~V~~v~ 73 (76)
T cd04888 11 PGVLSKVLNTIAQV----RGNVLTINQN-----IPIHGRANVTISIDTST-MNGDIDELLEELREIDGVEKVE 73 (76)
T ss_pred CchHHHHHHHHHHc----CCCEEEEEeC-----CCCCCeEEEEEEEEcCc-hHHHHHHHHHHHhcCCCeEEEE
Confidence 55567777777664 65443 1111 1123333333322 32 44 6788999999999998754
No 84
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=33.33 E-value=75 Score=29.94 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=40.3
Q ss_pred hcCcCC--CEEEECCChhHHHHHHHHHhH-----HhcCCCCCEEEECCcHHHHHHHHhCCCcE
Q 024953 43 EFVESG--MVLGLGTGSTAKHAVDRIGEL-----LRQGKLTNIVGIPTSKKTHEQAVSLGIPL 98 (260)
Q Consensus 43 ~lI~dg--~~I~LgsGST~~~la~~L~~~-----~~~~~l~~itvVTnSl~~a~~l~~~gi~v 98 (260)
+.+..| |.|.+-|++|+..|.+.+... .......++++++=+..++..+.+.|+++
T Consensus 195 ~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~G~~~ 257 (381)
T PRK07239 195 DAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRAGVPT 257 (381)
T ss_pred HHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHcCCCc
Confidence 344444 899999999999999988632 00000125778888999999999988765
No 85
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=32.67 E-value=38 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.1
Q ss_pred CcCCCEEEECCChhHHHHHHHHHhHH
Q 024953 45 VESGMVLGLGTGSTAKHAVDRIGELL 70 (260)
Q Consensus 45 I~dg~~I~LgsGST~~~la~~L~~~~ 70 (260)
.+||...-+-.|+|+..+|+.+...+
T Consensus 5 lpdG~~~~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 5 LPDGSIKELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp ETTSCEEEEETTBBHHHHHHHHSHHH
T ss_pred CCCCCeeeCCCCCCHHHHHHHHCHHH
Confidence 38999999999999999999997654
No 86
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=30.95 E-value=51 Score=28.21 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=41.0
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
.+-+.|.+-|++++..+.+.+.+.. ..+.+..+++-+..++..+++.|++...
T Consensus 167 ~~~~~v~ftS~~~~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~~l~~~g~~~~~ 219 (231)
T PF02602_consen 167 GEIDAVVFTSPSAVRAFLELLKKNG--ALLKRVPIVAIGPRTAKALRELGFKVDI 219 (231)
T ss_dssp TTTSEEEESSHHHHHHHHHHSSGHH--HHHTTSEEEESSHHHHHHHHHTT-SCSE
T ss_pred CCCCEEEECCHHHHHHHHHHhHhhh--hhhhCCEEEEECHHHHHHHHHcCCCceE
Confidence 3458999999999999999987520 0013789999999999999999987643
No 87
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=30.14 E-value=66 Score=29.07 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEE
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~ 99 (260)
.-+++.+-||||+..|.+.+.+... ..+.+..++.-|..++..+.+.|+..+
T Consensus 190 ~~d~i~ftS~sav~~f~~~l~~~~~-~~l~~~~~v~is~rtA~~a~~~G~~~v 241 (266)
T PRK08811 190 PRSVLALSSAEALTLILQQLPDALR-RALQQRPVVASSDRLLDAAHAAGFIHV 241 (266)
T ss_pred CCCEEEEChHHHHHHHHHHhhhhHH-HHHhCCCEEEeCHHHHHHHHHcCCCce
Confidence 4689999999999999988864210 011256778889999999999987655
No 88
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=28.81 E-value=82 Score=26.98 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=40.9
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEc
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l 101 (260)
.+-|.|.+-|++++..+.+.+........+.+..+++-+..++..+++.|+.....
T Consensus 176 ~~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~ 231 (249)
T PRK05928 176 GEVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIV 231 (249)
T ss_pred CCCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCccee
Confidence 46799999999999999998864210000125788899999999999988764433
No 89
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=28.74 E-value=1.4e+02 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=40.8
Q ss_pred CCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
++.+|.+|.|..-..+++.|.++. .++++|.++.+..+.+++.+.+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-----~~vvvId~d~~~~~~~~~~g~~~i~ 465 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-----IPLVVIETSRTRVDELRERGIRAVL 465 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHHCCCeEEE
Confidence 477899999999999999997541 2799999999888888888877664
No 90
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.55 E-value=2.1e+02 Score=28.61 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCcCC-CEEEECCChh------HHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 35 KIAAYKAVEFVESG-MVLGLGTGST------AKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg-~~I~LgsGST------~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
..|.++|.+++++| |.|=||.+|| +..+++.|.+.. .. .+.+=|.+..++..+.+.|..++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~---~~-pISIDT~~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL---DS-PVIADTPTLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC---CC-cEEEeCCCHHHHHHHHHcCCCEEE
Confidence 56888999999998 7888999998 666666665431 22 578888888888877777776553
No 91
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=28.32 E-value=1.7e+02 Score=24.48 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=36.7
Q ss_pred EEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 50 ~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
+||=..|.|+-.+++.+.......+ .+++|||+.-.+...+...|...++
T Consensus 70 Vvft~~~~tAD~~Ie~~v~~~~~~~-~~v~VVTSD~~iq~~~~~~GA~~is 119 (166)
T PF05991_consen 70 VVFTKEGETADDYIERLVRELKNRP-RQVTVVTSDREIQRAARGRGAKRIS 119 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCC-CeEEEEeCCHHHHHHHhhCCCEEEc
Confidence 4556778999998888876543212 3799999999888888777776554
No 92
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.81 E-value=1.3e+02 Score=27.84 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+.+.+...=-|..|+|++...=+-+|.+.-++-+...+-++|+.+
T Consensus 56 ~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4668889999999887655588888888666666666544333344688888766
No 93
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=26.61 E-value=5e+02 Score=23.76 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=40.8
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-HHHhCCCcEEEcCC----CccccEEEEccC
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-QAVSLGIPLSDLDS----YPVVDLAIDGAD 115 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-~l~~~gi~v~~l~~----~~~~D~af~Gad 115 (260)
....++.+|+|.....+++.|... + ..+++++..+..-+. .+...|.....+.. ....|+.|..+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~---g-~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK---G-VAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc---C-CCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCC
Confidence 344466689999999999999753 1 126888888776544 44555654443321 123577666554
No 94
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=26.58 E-value=2.5e+02 Score=25.93 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCcCC-CEEEECCChh---------------HHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcE
Q 024953 35 KIAAYKAVEFVESG-MVLGLGTGST---------------AKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPL 98 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg-~~I~LgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v 98 (260)
..+.++|.+++++| |.|=||.-|| +..+++.|.+.. .. .+.+=|....++..+.+.|..+
T Consensus 38 ~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~---~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF---EV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CC-eEEEECCCHHHHHHHHHcCCCE
Confidence 34667799999998 6777995554 444455554321 12 4777788888888877777665
Q ss_pred E
Q 024953 99 S 99 (260)
Q Consensus 99 ~ 99 (260)
+
T Consensus 114 I 114 (282)
T PRK11613 114 I 114 (282)
T ss_pred E
Confidence 4
No 95
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=25.57 E-value=2e+02 Score=18.80 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=34.0
Q ss_pred cCcHHHHHHHHHHhhhhCCCceE-EeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeec
Q 024953 170 PYCWKFTAKRLQDLFEDCGCVAK-LRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHG 238 (260)
Q Consensus 170 p~~~~~v~~~l~~~~~~~g~~~~-~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~G 238 (260)
|..+..+.+.+.+ .|+... +..... .++|..++-+.+.. . .+.++-++|+.++||.+.-
T Consensus 10 ~g~l~~i~~~l~~----~~~nI~~~~~~~~----~~~~~~~~~~~v~~-~-~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 10 PGVIGKVGTILGE----HGINIAAMQVGRK----EKGGIAYMVLDVDS-P-VPEEVLEELKALPGIIRVR 69 (71)
T ss_pred CCHHHHHHHHHHh----cCCCeeeEEEecc----CCCCEEEEEEEcCC-C-CCHHHHHHHHcCCCeEEEE
Confidence 4445555555555 466442 222111 11345555555543 3 6889999999999998753
No 96
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=25.17 E-value=3e+02 Score=24.80 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCcCC-CEEEECCChh---------------HHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcE
Q 024953 35 KIAAYKAVEFVESG-MVLGLGTGST---------------AKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPL 98 (260)
Q Consensus 35 ~~IA~~Aa~lI~dg-~~I~LgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v 98 (260)
..+.++|.+++++| +.|=+|.-|| +..+++.|.+.. .. .+.+=|.+..++..+.+.|..+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~---~~-plSIDT~~~~v~e~al~~G~~i 99 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL---DV-LISVDTFRAEVARAALEAGADI 99 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CC-cEEEeCCCHHHHHHHHHhCCCE
Confidence 44667799999999 5777987666 555666665431 22 4777788888888776666554
Q ss_pred E
Q 024953 99 S 99 (260)
Q Consensus 99 ~ 99 (260)
+
T Consensus 100 I 100 (257)
T cd00739 100 I 100 (257)
T ss_pred E
Confidence 3
No 97
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=23.97 E-value=2.1e+02 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=35.2
Q ss_pred EEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcC
Q 024953 51 LGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLD 102 (260)
Q Consensus 51 I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~ 102 (260)
..+|+|..-..+|-+|.+.- .++++++.+. ....+.+.|+.+..-.
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g-----~~V~l~~r~~-~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAG-----HDVTLVSRSP-RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTT-----CEEEEEESHH-HHHHHHHHCEEEEETT
T ss_pred EEECcCHHHHHHHHHHHHCC-----CceEEEEccc-cHHhhhheeEEEEecc
Confidence 56899999999999997531 3799999998 5555777777666543
No 98
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=23.76 E-value=4.1e+02 Score=25.41 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.5
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+..++.+|+|-+..++|..|.+. + .++++++.+.
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~---g--~~Vtli~~~~ 181 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYER---G--LHPTLIHRSD 181 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---C--CcEEEEeccc
Confidence 356788999999999999999754 1 2689988653
No 99
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.72 E-value=2.2e+02 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.077 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTA 59 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~ 59 (260)
.++|+++.+.+++.+...-.|+.|.|++.
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~viagv~~~~ 81 (288)
T cd00954 53 VEERKQIAEIVAEAAKGKVTLIAHVGSLN 81 (288)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeccCCCC
Confidence 57789999999998876667888887643
No 100
>PRK04998 hypothetical protein; Provisional
Probab=23.48 E-value=3.2e+02 Score=20.41 Aligned_cols=69 Identities=7% Similarity=0.188 Sum_probs=36.6
Q ss_pred cc--ccEEEecCcHHHHHHHHHHhhhhCC--C-ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEE
Q 024953 162 LA--MPVEVVPYCWKFTAKRLQDLFEDCG--C-VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVV 235 (260)
Q Consensus 162 ~~--lPvEV~p~~~~~v~~~l~~~~~~~g--~-~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVv 235 (260)
|| -|+-|+-.+-....+.+..++..+. . ..+.|.+++|-|+|= -+.+.... -....++-++|..+|||.
T Consensus 12 fPc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Sv----tv~v~v~s-~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 12 FPCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSV----SITITATS-IEQVETLYEELAKIEGVR 85 (88)
T ss_pred CCCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEE----EEEEEECC-HHHHHHHHHHHhcCCCEE
Confidence 55 5566654444455555555554321 1 134454444334331 13444332 235667788999999995
No 101
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=23.43 E-value=2e+02 Score=20.17 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.2
Q ss_pred CCHHHHHHHhcCCCcEEee
Q 024953 219 GDLKVASDNILRLAGVVEH 237 (260)
Q Consensus 219 ~~~~~l~~~l~~i~GVve~ 237 (260)
.....+-++|+++|||.+.
T Consensus 49 ~~L~~li~~L~~i~gV~~V 67 (74)
T cd04877 49 EKLQTLMPEIRRIDGVEDV 67 (74)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 4567777899999999874
No 102
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=23.16 E-value=3.1e+02 Score=27.98 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=40.9
Q ss_pred CCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
.+.+|.+|.|..-..+++.|.++ +. +++++-++.+..+.+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~----g~-~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS----GV-KMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC----CC-CEEEEECCHHHHHHHHhcCCeEEE
Confidence 46799999999999999999754 12 699999999988888888887764
No 103
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.11 E-value=2e+02 Score=25.71 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
.++|+++.+.+++.+.....|+.|.|++...-+.++.+..++.+...+.+++..
T Consensus 49 ~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 49 DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 467899999999998876777777776444333333322222223245555543
No 104
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.65 E-value=98 Score=18.17 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.7
Q ss_pred eEeCCCCEEEEeeCCC
Q 024953 201 FVTDNGNYVIDLYLKK 216 (260)
Q Consensus 201 ~vTd~GN~IiD~~f~~ 216 (260)
++..+||.|++..|+.
T Consensus 3 ~id~~G~~vi~~~yd~ 18 (35)
T PF14903_consen 3 YIDKNGKIVIPPKYDE 18 (35)
T ss_pred EEeCCCCEEEEccccC
Confidence 6778999999998875
No 105
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=21.22 E-value=5.2e+02 Score=22.96 Aligned_cols=63 Identities=30% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHhcCcCC-CEEEECCC-----hhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEc
Q 024953 36 IAAYKAVEFVESG-MVLGLGTG-----STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (260)
Q Consensus 36 ~IA~~Aa~lI~dg-~~I~LgsG-----ST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l 101 (260)
.+|+..+++...| ++++|-+| ||..++.+.|.+.. .+. .+.+|+.=-.....+...|+++..-
T Consensus 80 ~~~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~--~~~-~veivPGIss~~a~aa~~g~pL~~~ 148 (238)
T PRK05948 80 AAADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELY--PQV-AIQTIPGVCSPLAAAAALGIPLTLG 148 (238)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CCC-CEEEECChhHHHHHHHHhCCCeecC
Confidence 4566666667776 68888888 56666666665421 123 6888887655555567788887643
No 106
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.00 E-value=3.9e+02 Score=23.25 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--cCcCCCE---EEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhC-------CCcEE--
Q 024953 34 KKIAAYKAVE--FVESGMV---LGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL-------GIPLS-- 99 (260)
Q Consensus 34 K~~IA~~Aa~--lI~dg~~---I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~-------gi~v~-- 99 (260)
|+.|-....+ -+++||. ||-||||-+.+++ .+.... .++.+--+.......++. ++.++
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~------~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g 91 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSG------RVIAIERDEEALELIERNAARFGVDNLEVVEG 91 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCc------eEEEEecCHHHHHHHHHHHHHhCCCcEEEEec
Q ss_pred ----EcCCCccccEEEEc
Q 024953 100 ----DLDSYPVVDLAIDG 113 (260)
Q Consensus 100 ----~l~~~~~~D~af~G 113 (260)
.|.+...+|.+|+|
T Consensus 92 ~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 92 DAPEALPDLPSPDAIFIG 109 (187)
T ss_pred cchHhhcCCCCCCEEEEC
No 107
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.77 E-value=38 Score=23.76 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.9
Q ss_pred HHHHhcCcCCCEEEECCChhHHHHHHHHHhHH
Q 024953 39 YKAVEFVESGMVLGLGTGSTAKHAVDRIGELL 70 (260)
Q Consensus 39 ~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~ 70 (260)
++|++.|+.=|.=|+.||-....+|++|.++.
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENH 45 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHh
Confidence 45666666666667889999999999998653
No 108
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=20.68 E-value=1.8e+02 Score=23.70 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCcCCCEEEE----CCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFVESGMVLGL----GTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~L----gsGST~~~la~~L~~~ 69 (260)
++=+++|+.-++.+++|++|.| |+|-|+ |++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTt--l~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTT--LVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHH--HHHHHHHH
Confidence 3345678888888999999975 889887 45777654
No 109
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=20.58 E-value=2.1e+02 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=34.8
Q ss_pred ccccEEEEccC-cccCCCCc--ccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCC
Q 024953 105 PVVDLAIDGAD-EVDPFMNL--VKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLG 158 (260)
Q Consensus 105 ~~~D~af~Gad-gId~~~~~--i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg 158 (260)
...|+.|-||+ +|...|.+ ..+.+.. ++....-+..|+++.-+|+++++.
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn~----R~~~~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGNG----RLSTTLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCCc----hhhccCCCeEEEEEEHHHccCCHH
Confidence 47899999999 88777754 3333332 222334688899999999987754
No 110
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.55 E-value=2.2e+02 Score=25.45 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
..++++++.+.+++.....-.|..|.|++...-+.++.+..++.+...+.+++..
T Consensus 51 t~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 51 SDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3466888889999988766678888887444333344333222233235555443
No 111
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=20.04 E-value=2.8e+02 Score=26.97 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhCCC-ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEe
Q 024953 173 WKFTAKRLQDLFEDCGC-VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVE 236 (260)
Q Consensus 173 ~~~v~~~l~~~~~~~g~-~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve 236 (260)
-....+.+.+++.++|+ ..++| + .+.|+.+|.=.... -..+.+++..|..+||...
T Consensus 199 ~D~L~~~V~~IL~~~GY~~i~V~-~------~~pG~v~I~G~Iq~-~~~w~~V~~lL~~vpGL~g 255 (395)
T PRK15367 199 DDLLIREVQDVLIKMGYPHAEVS-S------EGPGSVLIHDDIQM-DQQWRKVQPLLADIPGLLH 255 (395)
T ss_pred HHHHHHHHHHHHHHcCcCceEEe-c------CCCCeEEEEeeecC-CcchHHHHHHHHhCcCcce
Confidence 45666777777777888 44555 2 34799999866653 3457899999999999764
Done!