Query 024953
Match_columns 260
No_of_seqs 287 out of 1836
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7o_A Ribose-5-phosphate isom 100.0 1.9E-68 6.6E-73 470.2 21.7 222 31-260 2-223 (225)
2 3hhe_A Ribose-5-phosphate isom 100.0 6.1E-68 2.1E-72 473.3 25.1 237 18-260 13-252 (255)
3 2pjm_A Ribose-5-phosphate isom 100.0 1.1E-66 3.9E-71 459.4 24.5 222 29-260 2-226 (226)
4 4gmk_A Ribose-5-phosphate isom 100.0 2.4E-66 8.2E-71 456.1 24.0 223 29-259 3-226 (228)
5 3uw1_A Ribose-5-phosphate isom 100.0 2.7E-66 9.4E-71 459.4 22.0 222 26-259 7-235 (239)
6 1lk5_A D-ribose-5-phosphate is 100.0 1E-65 3.5E-70 454.7 24.9 226 29-260 2-229 (229)
7 2f8m_A Ribose 5-phosphate isom 100.0 3.2E-65 1.1E-69 454.7 24.2 229 30-259 9-240 (244)
8 1uj6_A Ribose 5-phosphate isom 100.0 1.6E-64 5.4E-69 446.7 23.3 223 27-257 2-225 (227)
9 1xtz_A Ribose-5-phosphate isom 100.0 7.4E-65 2.5E-69 457.0 21.3 238 15-257 3-254 (264)
10 3ixq_A Ribose-5-phosphate isom 100.0 3.9E-64 1.3E-68 441.8 25.0 223 28-260 1-226 (226)
11 3kwm_A Ribose-5-phosphate isom 100.0 6.8E-64 2.3E-68 441.0 21.3 215 28-258 7-223 (224)
12 1m0s_A Ribose-5-phosphate isom 100.0 4E-63 1.4E-67 435.4 22.8 216 29-259 2-219 (219)
13 1o8b_A Ribose 5-phosphate isom 100.0 1.6E-63 5.5E-68 438.0 14.3 216 29-260 2-219 (219)
14 1vb5_A Translation initiation 99.3 1.1E-11 3.8E-16 111.8 12.4 133 31-171 93-239 (276)
15 3ecs_A Translation initiation 98.1 1.5E-05 5.1E-10 73.0 11.2 130 34-169 108-251 (315)
16 2w48_A Sorbitol operon regulat 98.1 2.5E-06 8.5E-11 77.4 4.6 50 31-83 89-142 (315)
17 3a11_A Translation initiation 98.0 3.8E-05 1.3E-09 70.9 11.8 131 33-170 127-271 (338)
18 2o0m_A Transcriptional regulat 98.0 2.3E-06 7.9E-11 78.7 3.0 88 29-118 119-247 (345)
19 1poi_B Glutaconate coenzyme A- 97.9 2.6E-05 9.1E-10 69.5 7.4 114 34-158 8-161 (260)
20 3d3u_A 4-hydroxybutyrate COA-t 97.8 8.1E-05 2.8E-09 70.8 10.0 51 31-87 193-243 (439)
21 1t9k_A Probable methylthioribo 97.8 0.00014 4.7E-09 67.4 10.8 132 32-170 133-289 (347)
22 2yvk_A Methylthioribose-1-phos 97.7 0.00011 3.9E-09 68.6 9.5 131 33-170 159-314 (374)
23 2a0u_A Initiation factor 2B; S 97.7 0.00015 5E-09 68.1 9.7 131 33-170 155-318 (383)
24 1t5o_A EIF2BD, translation ini 97.7 0.00027 9.2E-09 65.6 11.1 129 33-170 132-285 (351)
25 3rrl_A Succinyl-COA:3-ketoacid 97.5 0.00061 2.1E-08 59.8 10.0 43 38-84 11-56 (235)
26 3rrl_B Succinyl-COA:3-ketoacid 97.5 2.8E-05 9.6E-10 67.1 1.2 108 34-153 2-144 (207)
27 1k6d_A Acetate COA-transferase 97.4 0.00067 2.3E-08 58.7 9.9 44 38-85 8-54 (220)
28 3cdk_A Succinyl-COA:3-ketoacid 97.3 0.00096 3.3E-08 58.6 9.0 43 38-84 11-56 (241)
29 3d3u_A 4-hydroxybutyrate COA-t 97.0 0.0009 3.1E-08 63.6 6.6 115 33-152 9-160 (439)
30 3qli_A Coenzyme A transferase; 97.0 0.0033 1.1E-07 60.1 10.1 126 23-150 11-182 (455)
31 1poi_A Glutaconate coenzyme A- 96.4 0.011 3.9E-07 53.7 9.0 43 38-84 6-52 (317)
32 2g39_A Acetyl-COA hydrolase; c 96.2 0.015 5E-07 56.2 8.7 115 34-151 14-167 (497)
33 2ahu_A Putative enzyme YDIF; C 96.1 0.0093 3.2E-07 58.0 7.3 52 34-85 14-70 (531)
34 1xr4_A Putative citrate lyase 96.0 0.012 4.1E-07 57.0 7.4 112 38-150 49-206 (509)
35 2oas_A ATOA, 4-hydroxybutyrate 96.0 0.027 9.2E-07 53.4 9.4 108 38-150 9-152 (436)
36 4eu9_A Succinyl-COA:acetate co 95.9 0.042 1.4E-06 53.1 10.3 116 34-151 13-171 (514)
37 2nvv_A Acetyl-COA hydrolase/tr 95.8 0.021 7.2E-07 55.2 8.0 111 38-151 8-162 (506)
38 3gk7_A 4-hydroxybutyrate COA-t 95.7 0.033 1.1E-06 53.1 8.9 113 34-150 10-157 (448)
39 3eh7_A 4-hydroxybutyrate COA-t 95.7 0.027 9.4E-07 53.4 8.3 113 34-150 14-161 (434)
40 3efb_A Probable SOR-operon reg 95.4 0.011 3.8E-07 52.2 4.2 46 24-69 33-82 (266)
41 3nze_A Putative transcriptiona 95.4 0.018 6E-07 51.0 5.4 49 30-82 35-87 (267)
42 3kv1_A Transcriptional repress 95.2 0.015 5.3E-07 51.4 4.4 39 30-68 34-76 (267)
43 2hj0_A Putative citrate lyase, 95.1 0.14 4.8E-06 49.6 11.0 109 37-150 51-209 (519)
44 1w2w_B 5-methylthioribose-1-ph 94.8 0.044 1.5E-06 46.4 5.9 63 106-170 51-113 (191)
45 3k6m_A Succinyl-COA:3-ketoacid 94.8 0.079 2.7E-06 50.9 8.3 110 32-152 261-406 (481)
46 3k6m_A Succinyl-COA:3-ketoacid 94.5 0.15 5.2E-06 49.0 9.4 43 38-84 7-52 (481)
47 2ahu_A Putative enzyme YDIF; C 94.5 0.14 4.8E-06 49.7 9.3 106 34-150 288-418 (531)
48 2gnp_A Transcriptional regulat 94.3 0.048 1.6E-06 48.1 5.2 46 33-82 39-88 (266)
49 1xr4_A Putative citrate lyase 94.1 0.55 1.9E-05 45.3 12.6 38 32-69 248-291 (509)
50 2hj0_A Putative citrate lyase, 93.8 0.35 1.2E-05 46.8 10.6 38 32-69 251-294 (519)
51 2okg_A Central glycolytic gene 93.7 0.04 1.4E-06 48.3 3.5 47 33-82 38-88 (255)
52 2oas_A ATOA, 4-hydroxybutyrate 93.6 0.42 1.4E-05 45.2 10.6 38 32-69 188-225 (436)
53 2r5f_A Transcriptional regulat 91.4 0.19 6.5E-06 44.1 4.7 38 32-69 38-80 (264)
54 3qli_A Coenzyme A transferase; 90.1 0.55 1.9E-05 44.8 6.8 45 32-82 219-263 (455)
55 1stz_A Heat-inducible transcri 87.4 0.073 2.5E-06 48.7 -1.2 47 32-91 100-147 (338)
56 3gk7_A 4-hydroxybutyrate COA-t 86.0 1 3.5E-05 42.8 5.8 38 32-69 193-230 (448)
57 3eh7_A 4-hydroxybutyrate COA-t 85.3 1.3 4.5E-05 41.8 6.2 38 32-69 197-234 (434)
58 2jsx_A Protein NAPD; TAT, proo 81.1 2.3 7.7E-05 31.8 4.8 71 163-245 9-80 (95)
59 2cvi_A 75AA long hypothetical 78.1 2.2 7.6E-05 30.1 3.9 61 166-237 8-69 (83)
60 2zbc_A 83AA long hypothetical 72.0 3.8 0.00013 28.5 3.7 62 166-238 8-70 (83)
61 3fwz_A Inner membrane protein 71.3 24 0.00081 26.8 8.6 49 48-101 8-56 (140)
62 2ri0_A Glucosamine-6-phosphate 68.8 6.4 0.00022 33.1 5.1 46 35-82 11-61 (234)
63 4eu9_A Succinyl-COA:acetate co 66.8 15 0.0005 35.2 7.7 58 19-82 226-293 (514)
64 2ia0_A Putative HTH-type trans 66.8 12 0.0004 30.2 6.1 80 143-238 63-151 (171)
65 1fs5_A Glucosamine-6-phosphate 66.6 6.9 0.00024 33.7 5.0 34 48-81 34-69 (266)
66 2cyy_A Putative HTH-type trans 65.1 3.2 0.00011 32.6 2.3 84 143-240 53-136 (151)
67 2cg4_A Regulatory protein ASNC 64.5 11 0.00036 29.4 5.3 84 143-240 54-139 (152)
68 1ne7_A Glucosamine-6-phosphate 59.9 13 0.00044 32.6 5.5 21 49-69 35-55 (289)
69 2djw_A Probable transcriptiona 59.2 6.7 0.00023 28.0 3.0 62 166-238 8-70 (92)
70 2g39_A Acetyl-COA hydrolase; c 58.8 12 0.00042 35.7 5.5 48 32-83 231-288 (497)
71 2e1c_A Putative HTH-type trans 58.6 3.7 0.00013 33.3 1.6 82 144-239 74-155 (171)
72 2dbb_A Putative HTH-type trans 58.5 5.8 0.0002 30.9 2.7 83 143-239 55-139 (151)
73 3ix7_A Uncharacterized protein 58.1 24 0.00081 27.8 6.2 65 32-102 52-123 (134)
74 2bkx_A Glucosamine-6-phosphate 55.1 8.6 0.00029 32.4 3.4 34 35-68 10-49 (242)
75 2nvv_A Acetyl-COA hydrolase/tr 54.8 18 0.00061 34.7 5.9 49 32-83 226-284 (506)
76 2p5v_A Transcriptional regulat 53.4 16 0.00055 28.7 4.6 81 144-238 57-140 (162)
77 3llv_A Exopolyphosphatase-rela 51.0 73 0.0025 23.6 8.4 48 48-100 7-54 (141)
78 2nzc_A Hypothetical protein; s 49.5 6.6 0.00023 28.9 1.5 60 174-236 18-77 (86)
79 3c85_A Putative glutathione-re 46.7 58 0.002 25.5 7.0 51 46-100 38-88 (183)
80 1y89_A DEVB protein; structura 45.8 22 0.00075 30.1 4.5 34 35-68 15-50 (238)
81 3upu_A ATP-dependent DNA helic 44.8 48 0.0016 30.5 7.1 71 17-92 11-91 (459)
82 1i1g_A Transcriptional regulat 44.6 22 0.00074 26.9 3.9 61 167-238 71-132 (141)
83 3l9w_A Glutathione-regulated p 40.8 1E+02 0.0034 28.3 8.5 48 48-100 5-52 (413)
84 4gek_A TRNA (CMO5U34)-methyltr 39.3 24 0.00082 30.2 3.8 54 34-92 57-113 (261)
85 1ucr_A Protein DSVD; dissimila 38.6 8.2 0.00028 27.8 0.5 28 35-62 36-64 (78)
86 2ko1_A CTR148A, GTP pyrophosph 36.6 37 0.0013 23.1 3.8 72 162-238 4-76 (88)
87 2pn6_A ST1022, 150AA long hypo 35.6 16 0.00053 28.2 1.8 59 170-239 75-134 (150)
88 4es6_A Uroporphyrinogen-III sy 34.6 41 0.0014 28.2 4.5 53 47-101 185-237 (254)
89 4df3_A Fibrillarin-like rRNA/T 31.8 35 0.0012 29.1 3.6 43 44-92 74-119 (233)
90 2w25_A Probable transcriptiona 31.1 12 0.00041 29.0 0.4 81 143-237 53-134 (150)
91 1jr2_A Uroporphyrinogen-III sy 30.0 58 0.002 27.9 4.7 53 46-99 209-261 (286)
92 1vl1_A 6PGL, 6-phosphogluconol 30.0 25 0.00087 29.8 2.3 21 48-68 46-66 (232)
93 3css_A 6-phosphogluconolactona 29.7 44 0.0015 28.8 3.9 21 48-68 38-58 (267)
94 2cfx_A HTH-type transcriptiona 29.2 77 0.0026 24.1 4.9 75 143-234 51-125 (144)
95 2dph_A Formaldehyde dismutase; 29.0 2.6E+02 0.0087 24.8 9.1 68 44-115 182-263 (398)
96 3dfz_A SIRC, precorrin-2 dehyd 28.2 1.7E+02 0.006 24.5 7.3 49 46-99 30-80 (223)
97 3s5o_A 4-hydroxy-2-oxoglutarat 27.8 93 0.0032 27.3 5.8 55 31-85 66-120 (307)
98 3i8o_A KH domain-containing pr 27.5 1E+02 0.0035 24.4 5.3 41 57-103 92-132 (142)
99 3mvn_A UDP-N-acetylmuramate:L- 27.3 55 0.0019 25.7 3.8 35 34-69 125-160 (163)
100 3mw8_A Uroporphyrinogen-III sy 27.2 49 0.0017 27.4 3.6 54 47-101 172-225 (240)
101 3l4b_C TRKA K+ channel protien 26.1 2.3E+02 0.0078 22.6 7.6 46 50-100 3-49 (218)
102 3p9z_A Uroporphyrinogen III co 24.4 78 0.0027 26.2 4.4 48 46-99 160-207 (229)
103 1rwu_A Hypothetical UPF0250 pr 24.2 1.1E+02 0.0039 22.9 4.9 40 188-235 64-106 (109)
104 1w3i_A EDA, 2-keto-3-deoxy glu 22.9 1.2E+02 0.004 26.4 5.4 51 31-85 51-102 (293)
105 3hvz_A Uncharacterized protein 22.6 53 0.0018 23.2 2.5 26 44-69 11-36 (78)
106 3m5v_A DHDPS, dihydrodipicolin 22.6 96 0.0033 27.1 4.8 55 31-85 59-114 (301)
107 3tqh_A Quinone oxidoreductase; 22.6 2.3E+02 0.008 24.1 7.4 67 44-116 149-225 (321)
108 2ehh_A DHDPS, dihydrodipicolin 21.0 1E+02 0.0035 26.8 4.6 54 31-85 52-106 (294)
109 3cpr_A Dihydrodipicolinate syn 20.9 1.1E+02 0.0037 26.9 4.8 54 31-85 68-122 (304)
110 3flu_A DHDPS, dihydrodipicolin 20.8 87 0.003 27.3 4.1 55 31-85 59-113 (297)
111 2nuw_A 2-keto-3-deoxygluconate 20.7 1.1E+02 0.0037 26.6 4.7 52 31-85 51-102 (288)
112 1kol_A Formaldehyde dehydrogen 20.6 4.2E+02 0.014 23.3 8.8 68 44-115 182-263 (398)
113 2r91_A 2-keto-3-deoxy-(6-phosp 20.6 1E+02 0.0035 26.7 4.5 52 31-85 50-101 (286)
114 3si9_A DHDPS, dihydrodipicolin 20.0 79 0.0027 28.0 3.7 55 31-85 74-128 (315)
No 1
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=1.9e-68 Score=470.18 Aligned_cols=222 Identities=44% Similarity=0.663 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEE
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLA 110 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~a 110 (260)
+++|++||++|++||++||+||||||||+.+++++|+++.+++.+ ++++||||.+++.++.+.|++++.+++.+++|+|
T Consensus 2 ~~~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a 80 (225)
T 3l7o_A 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT 80 (225)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred hHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence 478999999999999999999999999999999999987554444 7999999999999999999999999888899999
Q ss_pred EEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCc
Q 024953 111 IDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV 190 (260)
Q Consensus 111 f~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~ 190 (260)
|||||+||++++++|++++|++|||+++++|+++|+|+|+|||+++|| +|||||||+|++|.+|.++|+++ |+.
T Consensus 81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l----G~~ 154 (225)
T 3l7o_A 81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG--AFRLPVEVVQYGAERLFREFEKK----GYK 154 (225)
T ss_dssp EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----TCC
T ss_pred EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC--CCCEEEEEehhHHHHHHHHHHHc----CCc
Confidence 999999999999999999999999999999999999999999999999 49999999999999999999996 999
Q ss_pred eEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953 191 AKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 191 ~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
++||+++++||+|||||||+||+|.. |.||.+|+++|++||||||||||.++++.+++|+++|++++++
T Consensus 155 ~~lR~~~~~p~vTDnGn~IlD~~f~~-i~~p~~l~~~l~~i~GVVe~GlF~~~a~~v~v~~~~g~~~~~~ 223 (225)
T 3l7o_A 155 PSFREYDGVRFVTDMKNFIIDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEA 223 (225)
T ss_dssp EEECEETTEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEET---TEEEEC
T ss_pred eEEEEcCCCcEEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeeeccCCCEEEEEcCCceEEecc
Confidence 99999888999999999999999985 9999999999999999999999999999999999999888764
No 2
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=6.1e-68 Score=473.35 Aligned_cols=237 Identities=38% Similarity=0.642 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCc
Q 024953 18 SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIP 97 (260)
Q Consensus 18 ~~~~~~~~~m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~ 97 (260)
....++|+.|. ++++|++||++|+++|++||+||||||||+.+++++|+++.++ ++ ++++||||..++.++.+.|++
T Consensus 13 ~~~~~~~~~m~-~~e~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~-gl-~ItvVttS~~ta~~l~~~GI~ 89 (255)
T 3hhe_A 13 EAQTQGPGSMN-VQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVAN-GL-RVTCVATSQYSEQLCHKFGVP 89 (255)
T ss_dssp ----------C-HHHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHT-TC-CEEEEESSHHHHHHHHHTTCC
T ss_pred eecCCCCCCCC-HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhcc-CC-cEEEEcCCHHHHHHHHHcCCc
Confidence 34457788876 7889999999999999999999999999999999999987543 35 799999999999999999999
Q ss_pred EEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHH
Q 024953 98 LSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTA 177 (260)
Q Consensus 98 v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~ 177 (260)
++.+++..++|+||||||+||++++++|++++|++|||+++++|+++|+|+|+|||+++|| +|||||||+|++|.+|.
T Consensus 90 l~~l~~~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG--~~plPVEViP~a~~~v~ 167 (255)
T 3hhe_A 90 ISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG--AFALPIEVNPFGIHATR 167 (255)
T ss_dssp BCCTTTCCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHH
T ss_pred EEecccccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC--CCCeEEEEchhHHHHHH
Confidence 9999887799999999999999999999999999999999999999999999999999999 49999999999999999
Q ss_pred HHHHHhhhh--CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCC-C
Q 024953 178 KRLQDLFED--CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASEL-G 254 (260)
Q Consensus 178 ~~l~~~~~~--~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~-g 254 (260)
++|+++|.. +|+++++|+++++||||||||||+||+|.+ |.||.+|+++|++||||||||||.++++.||+|+++ |
T Consensus 168 ~~l~~~~~~~glgg~~~lR~~~~gp~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GLF~~~a~~vivg~~~~G 246 (255)
T 3hhe_A 168 IAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQ 246 (255)
T ss_dssp HHHHHHHHHHTCCSCEEECEETTEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEECTTSC
T ss_pred HHHHhhhccccCCCeEEEeeCCCCcEEcCCCCEEEEeeCCC-cCCHHHHHHHHhcCCCEeeecccccCCCEEEEEcCCCC
Confidence 999996543 267999999999999999999999999996 999999999999999999999999999999999999 9
Q ss_pred eEEecC
Q 024953 255 VTIRNK 260 (260)
Q Consensus 255 ~~~~~~ 260 (260)
++++++
T Consensus 247 v~~~~~ 252 (255)
T 3hhe_A 247 IKVLEP 252 (255)
T ss_dssp EEEECG
T ss_pred eEEEec
Confidence 998753
No 3
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=1.1e-66 Score=459.36 Aligned_cols=222 Identities=41% Similarity=0.677 Sum_probs=208.7
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D 108 (260)
+++++|++||++|++||++||+||||+|||+.+++++|+++.+++.+ ++++||||+.++.++.+.|++++.+++. .+|
T Consensus 2 ~~~~~K~~iA~~A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l-~itvVtnS~~~a~~l~~~gi~v~~l~~~-~iD 79 (226)
T 2pjm_A 2 SNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY-DVD 79 (226)
T ss_dssp CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC-CCS
T ss_pred ChHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCC-cEEEEeCcHHHHHHHHhcCCeEEeeccc-cCC
Confidence 46789999999999999999999999999999999999876433445 7999999999999999999999999775 499
Q ss_pred EEEEccCcccCC-CCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953 109 LAIDGADEVDPF-MNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (260)
Q Consensus 109 ~af~GadgId~~-~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~ 187 (260)
++|+|||+||++ ++++++++++++|||+++++|+++|+|+|+|||+++||.+ |||||||+|++|.+|.++|+++
T Consensus 80 ~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~-~~lPvEV~p~a~~~v~~~l~~~---- 154 (226)
T 2pjm_A 80 IAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEK-FPIPVEVIPSAYRVVIRALSEM---- 154 (226)
T ss_dssp EEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSS-SCEEEEECGGGHHHHHHHHHHT----
T ss_pred EEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCC-CCEEEEEehhHHHHHHHHHHHc----
Confidence 999999999999 9999999999999999999999999999999999999964 9999999999999999999996
Q ss_pred CCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953 188 GCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 188 g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
|+.++||++ +++||+|||||||+|| |.+ |.||.+|+++|++||||||||||.+ ++.+|+|+++|+++++|
T Consensus 155 g~~~~lR~~~~~~gp~vTDnGn~IlD~-~~~-i~~p~~l~~~l~~i~GVve~GlF~~-a~~v~~~~~~g~~~~~~ 226 (226)
T 2pjm_A 155 GGEAVIRLGDRKRGPVITDNGNMIIDV-FMN-IDDAIELEKEINNIPGVVENGIFTK-VDKVLVGTKKGVKTLKK 226 (226)
T ss_dssp TCEEEECBCSSSSSBCBCTTSCEEEEE-ECC-CSCHHHHHHHHHTSTTEEEESEECC-CSEEEEEETTEEEEECC
T ss_pred CCceEEeecCCCCCcEEcCCCCEEEEe-CCC-CCCHHHHHHHhcCCCCEEeecCccC-CCEEEEEcCCceEEccC
Confidence 899999986 6789999999999999 985 9999999999999999999999999 99999999999999886
No 4
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=100.00 E-value=2.4e-66 Score=456.07 Aligned_cols=223 Identities=45% Similarity=0.681 Sum_probs=213.0
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D 108 (260)
+|++.|+++|++|++||++||+||||||||+.+++++|+++.+++.+ +++.|++|.+++.+++++|+++..+++..++|
T Consensus 3 ~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD 81 (228)
T 4gmk_A 3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHID 81 (228)
T ss_dssp HHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCccc
Confidence 58899999999999999999999999999999999999988765566 79999999999999999999999999888999
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG 188 (260)
Q Consensus 109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g 188 (260)
+||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++|| +|||||||+|++|.+|.++|.++ |
T Consensus 82 ~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG--~fplPVEVip~a~~~v~~~l~~l----G 155 (228)
T 4gmk_A 82 LTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLG--QFPLPVEVIPYGSGTVFKRFEEK----G 155 (228)
T ss_dssp EEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----T
T ss_pred eEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccC--CeeEEEEEehhhHHHHHHHHHHc----C
Confidence 99999999999999999999999999999999999999999999999999 49999999999999999999996 9
Q ss_pred CceEEeecCC-CceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEec
Q 024953 189 CVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN 259 (260)
Q Consensus 189 ~~~~~R~~~~-~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~ 259 (260)
+.+++|++++ +||+|||||||+||+|.+ |.||.+|+++|++||||||||||.++++.+++|++||+++++
T Consensus 156 ~~~~~R~~~~g~~~vTDnGN~IlD~~~~~-i~dp~~l~~~L~~i~GVVe~GLF~~~a~~vivg~~dGv~~l~ 226 (228)
T 4gmk_A 156 LNPEFRKNEDGSLLHTDSDNYIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLE 226 (228)
T ss_dssp CCEEECBCTTSSBCCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEE
T ss_pred CceeecccCCCCeEEecCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeeeeecCCCCEEEEEeCCCcEEEe
Confidence 9999999754 679999999999999986 999999999999999999999999999999999999999986
No 5
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=2.7e-66 Score=459.42 Aligned_cols=222 Identities=37% Similarity=0.576 Sum_probs=208.5
Q ss_pred CCCChHHHHHHHHHHHHhcCcC----CCEEEECCChhHHHHHHHHHhHHhcCCCCCEE-EECCcHHHHHHHHhCCCcEEE
Q 024953 26 VILTQDELKKIAAYKAVEFVES----GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIV-GIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 26 ~m~~~~~~K~~IA~~Aa~lI~d----g~~I~LgsGST~~~la~~L~~~~~~~~l~~it-vVTnSl~~a~~l~~~gi~v~~ 100 (260)
+|++++++|+++|++|+++|++ ||+||||||||+.+++++|+++.+ +++ +||||..++.++.+.|+++..
T Consensus 7 ~~m~~~~~K~~aA~~A~~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~~-----~i~~~V~tS~~t~~~~~~~Gi~l~~ 81 (239)
T 3uw1_A 7 LLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKD-----RYRGAVSSSVATTERLKSHGIRVFD 81 (239)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSCTTCEEEECCSHHHHHHHHHHHTTGG-----GSCEEEESSHHHHHHHHHTTCCBCC
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCCCEEEECccHHHHHHHHHHHhhhc-----cceEEeCCcHHHHHHHHHcCCcEEe
Confidence 4567889999999999999999 999999999999999999987632 577 799999999999999999999
Q ss_pred cCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHH
Q 024953 101 LDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRL 180 (260)
Q Consensus 101 l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l 180 (260)
+++.+++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+||++++|| +|||||||+|++|.+|.++|
T Consensus 82 l~~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg--~~plPVEViP~a~~~v~~~l 159 (239)
T 3uw1_A 82 LNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRL 159 (239)
T ss_dssp GGGCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHH
T ss_pred cccccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC--CCCeEEEEChhHHHHHHHHH
Confidence 9888899999999999999999999999999999999999999999999999999999 49999999999999999999
Q ss_pred HHhhhhCCCceEEeecCCC-ceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccc-cccEEEEEcCCCeEEe
Q 024953 181 QDLFEDCGCVAKLRTTGEQ-PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD-MATTVIVASELGVTIR 258 (260)
Q Consensus 181 ~~~~~~~g~~~~~R~~~~~-p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~-~~~~viv~~~~g~~~~ 258 (260)
+++ |+.++||+++++ ||+|||||||+||+|.. |.||.+|+++|++||||||||||.+ ++|.+++|+++|++++
T Consensus 160 ~~l----G~~~~lR~~~~g~p~vTDnGN~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~a~~vivg~~~Gv~~~ 234 (239)
T 3uw1_A 160 AAL----GGVPVLRVKQDGTPYVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVETL 234 (239)
T ss_dssp HHT----TCEEEECBCTTSSBCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEE
T ss_pred HHc----CCCeEEeecCCCCceEccCCCEEEEecCCC-CCCHHHHHHHHcCCCCEEeecCCcCCCCCEEEEEcCCceEEE
Confidence 996 999999997554 99999999999999985 9999999999999999999999998 5899999999998876
Q ss_pred c
Q 024953 259 N 259 (260)
Q Consensus 259 ~ 259 (260)
+
T Consensus 235 ~ 235 (239)
T 3uw1_A 235 R 235 (239)
T ss_dssp E
T ss_pred e
Confidence 5
No 6
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=1e-65 Score=454.73 Aligned_cols=226 Identities=42% Similarity=0.697 Sum_probs=208.3
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D 108 (260)
++.++|++||++|+++|+|||+||||+|||+.+++++|+++.++..++++|+||||+.++.++.+.+++++.++..+++|
T Consensus 2 ~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~D 81 (229)
T 1lk5_A 2 NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAID 81 (229)
T ss_dssp CHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEE
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccCC
Confidence 46789999999999999999999999999999999999865332223369999999999999988899999887656999
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG 188 (260)
Q Consensus 109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g 188 (260)
+||+||||||++++++++++++++|||+++++|+++|+|+|||||+++||. +|||||||+|++|.++.++|+++ |
T Consensus 82 ~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~-~~~lPvEV~p~~~~~v~~~l~~l----g 156 (229)
T 1lk5_A 82 VAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQ-KMPVPIEVIPQAWKAIIEELSIF----N 156 (229)
T ss_dssp EEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTS-SCCEEEEECGGGHHHHHHHGGGG----T
T ss_pred EEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCC-CCCEEEEECcchHHHHHHHHHHc----C
Confidence 999999999999889999999999999998899999999999999999996 49999999999999999999997 8
Q ss_pred CceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953 189 CVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 189 ~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
+.++||++ +++||+|||||||+||+|.+ |.||.+++++|++||||||||||.++++.+++|+++|++++++
T Consensus 157 ~~~~~R~~~~~~~~~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~~~ 229 (229)
T 1lk5_A 157 AKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER 229 (229)
T ss_dssp CEEEECBCSSSSSBCCCTTSCEEEEEECSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEEC
T ss_pred CCeEEeeccCCCCcEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceecccccCCCEEEEEeCCCeEEeCC
Confidence 99999985 67899999999999999985 9999999999999999999999999999999999999888763
No 7
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=3.2e-65 Score=454.66 Aligned_cols=229 Identities=42% Similarity=0.713 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHHh-cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953 30 QDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~-lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D 108 (260)
+++.|++||++|++ +|+|||+||||+|||+.+++++|+++.+++.++++++||||+.++.+|.+.|++++.++...++|
T Consensus 9 ~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD 88 (244)
T 2f8m_A 9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNID 88 (244)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCBS
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcCC
Confidence 57899999999999 99999999999999999999999866433334469999999999999988899999886545899
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc-cCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (260)
Q Consensus 109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~-~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~ 187 (260)
+||+||||||+++++++++++|++|||+++++|+++|+|+|+|||+ ++||.. |||||||+|++|.+|.++|+++|...
T Consensus 89 ~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~-~plPvEV~p~a~~~v~~~l~~l~~~~ 167 (244)
T 2f8m_A 89 ITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMT-GAVPIEILTFGYEKIIENLLKIYTLK 167 (244)
T ss_dssp EEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCS-SCEEEEECSTTHHHHHHHHTTSTTTT
T ss_pred EEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCCC-CcEEEEEcccHHHHHHHHHHHHhhcc
Confidence 9999999999998899999999999998888999999999999999 999974 99999999999999999999986555
Q ss_pred CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEec
Q 024953 188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRN 259 (260)
Q Consensus 188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~~ 259 (260)
|+.++||+++++||||||||||+||+|.++|.||.+++++|++||||||||||.++++.+|+|+++| +.+.+
T Consensus 168 G~~~~lR~~~~~p~vTDnGn~IlD~~f~~~i~dp~~l~~~l~~i~GVVe~GlF~~~a~~vi~~~~~G~v~~~~ 240 (244)
T 2f8m_A 168 GCTYKIRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLN 240 (244)
T ss_dssp TCEEEECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEcCCCCEEEEecCCCCCCCHHHHHHHHhcCCCcceeeeEecCCCEEEEEeCCCeEEeec
Confidence 8999999877889999999999999998669999999999999999999999999999999999999 55443
No 8
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=1.6e-64 Score=446.65 Aligned_cols=223 Identities=46% Similarity=0.717 Sum_probs=204.9
Q ss_pred CCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953 27 ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPV 106 (260)
Q Consensus 27 m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~ 106 (260)
|+.+.++|++||++|+++|+|||+||||+|||+.+++++|+++.+++.++++++||||+.++.+|.+.|++++.+.+ ++
T Consensus 2 ~~~~~~~K~~IA~~Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~-~~ 80 (227)
T 1uj6_A 2 ERPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EG 80 (227)
T ss_dssp -CTTHHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TC
T ss_pred CCchHHHHHHHHHHHHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCC-Cc
Confidence 45578899999999999999999999999999999999998654333332399999999999999989999999966 89
Q ss_pred ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953 107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (260)
Q Consensus 107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~ 186 (260)
+|+||+||||||.++.++++++++++||||++++|+++|+|+|||||++++| +|||||||+|++|.++.++|+++
T Consensus 81 ~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~sK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~~--- 155 (227)
T 1uj6_A 81 VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIADL--- 155 (227)
T ss_dssp EEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHTT---
T ss_pred CCEEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEcchhccccC--CCceeEEECcCHHHHHHHHHHhh---
Confidence 9999999999999888899999999999999887999999999999999999 59999999999999999999997
Q ss_pred CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEE
Q 024953 187 CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTI 257 (260)
Q Consensus 187 ~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~ 257 (260)
|+.++||+.+++||+|||||||+||+|.+ |.||.+++++|++||||||||||.++++.+++|+++| +++
T Consensus 156 -g~~~~~R~~~~~~~vTdnGn~ilD~~~~~-i~~~~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~ 225 (227)
T 1uj6_A 156 -GGEPELRMDGDEFYFTDGGHLIADCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEEL 225 (227)
T ss_dssp -TCCEEECEETTEECCCTTSCEEEEECCCS-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEEETTEEEEE
T ss_pred -CCCeEEEecCCCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhCCCCcceeccEecCCCEEEEEeCCCeEEe
Confidence 89999998667899999999999999985 9999999999999999999999999999999999999 544
No 9
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-65 Score=456.99 Aligned_cols=238 Identities=32% Similarity=0.545 Sum_probs=202.2
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCc--CCCEEEECCChhHHHHHHHHHhHHhcCCCC----CEEEECCcHHH
Q 024953 15 TGLSPLSSPPPVILTQDELKKIAAYKAVE-FVE--SGMVLGLGTGSTAKHAVDRIGELLRQGKLT----NIVGIPTSKKT 87 (260)
Q Consensus 15 ~~~~~~~~~~~~m~~~~~~K~~IA~~Aa~-lI~--dg~~I~LgsGST~~~la~~L~~~~~~~~l~----~itvVTnSl~~ 87 (260)
+|+.+.|+-|+.++++.++|++||++|++ +|+ +||+||||+|||+.+++++|.++.+++.++ ++++||||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~ 82 (264)
T 1xtz_A 3 AGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQS 82 (264)
T ss_dssp ----------------CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHH
T ss_pred CCCCccCCCcccCCCHHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHH
Confidence 67888899999999889999999999999 999 999999999999999999998653222111 48999999999
Q ss_pred HHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc-cCCCCCCc--cc
Q 024953 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGL--AM 164 (260)
Q Consensus 88 a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~-~~lg~~~~--~l 164 (260)
+.+|.+.|++++.++..+++|+||+||||||+++++++++++|++|||+++++|+++|+|+|+|||+ ++||.. | ||
T Consensus 83 a~~l~~~gi~v~~l~~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~-~~~pl 161 (264)
T 1xtz_A 83 RNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKN-WRQGV 161 (264)
T ss_dssp HHHHHHTTCEECCTTTCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSS-CCSCE
T ss_pred HHHHHHCCCeEEEehhcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccccccc-CCCCE
Confidence 9999988999999876679999999999999998899999999999999988999999999999999 899963 8 99
Q ss_pred cEEEecCcHHHHHHHHHHhhhhCCC-ceEEeec---CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccc
Q 024953 165 PVEVVPYCWKFTAKRLQDLFEDCGC-VAKLRTT---GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF 240 (260)
Q Consensus 165 PvEV~p~~~~~v~~~l~~~~~~~g~-~~~~R~~---~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF 240 (260)
||||+|++|.+|.++|++. +|+ +++||++ +++||||||||||+||+|.. |.||.+|+++|++||||||||||
T Consensus 162 PVEV~p~a~~~v~~~l~~~---~g~~~~~lR~~~~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GlF 237 (264)
T 1xtz_A 162 PIEIVPSSYVRVKNDLLEQ---LHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGE-ISDPRKLHREIKLLVGVVETGLF 237 (264)
T ss_dssp EEEECGGGHHHHHHHHHHT---SCCSEEEECEETTTEEEECCCTTSCEEEEEECSS-BSCHHHHHHHHHTSTTEEEESEE
T ss_pred eEEEChhHHHHHHHHHHHH---cCCCCceEeecccCCCCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCccccceE
Confidence 9999999999999999443 377 9999985 46899999999999999996 99999999999999999999999
Q ss_pred cccccEEEEEcCCCeEE
Q 024953 241 LDMATTVIVASELGVTI 257 (260)
Q Consensus 241 ~~~~~~viv~~~~g~~~ 257 (260)
.++++.+|+|+++|+.+
T Consensus 238 ~~~a~~vi~~~~~G~~~ 254 (264)
T 1xtz_A 238 IDNASKAYFGNSDGSVE 254 (264)
T ss_dssp CSCCSEEEEECTTSCEE
T ss_pred ecCCCEEEEEeCCceEE
Confidence 99999999999999443
No 10
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.9e-64 Score=441.84 Aligned_cols=223 Identities=41% Similarity=0.692 Sum_probs=208.1
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (260)
Q Consensus 28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~ 107 (260)
|++++.|+++|++|++||++||+||||||||+.+++++|+++.+++.+ +++.|++|.+++.++.+.|+++..+++. .+
T Consensus 1 M~~d~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~l~~~-~i 78 (226)
T 3ixq_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY-DV 78 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC-CC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCccccccc-cc
Confidence 457889999999999999999999999999999999999987765566 6999999999999999999999999875 69
Q ss_pred cEEEEccCccc-CCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953 108 DLAIDGADEVD-PFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (260)
Q Consensus 108 D~af~GadgId-~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~ 186 (260)
|+||||||+|| ++++++||+|+|++|||+++++|+++|+++|+||++++||.+ |||||||+|++|.++.++|.++
T Consensus 79 Dl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~-fplPVEVip~a~~~v~~~l~~l--- 154 (226)
T 3ixq_A 79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEK-FPIPVEVIPSAYRVVIRALSEM--- 154 (226)
T ss_dssp SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSS-SCEEEEECGGGHHHHHHHHHHT---
T ss_pred cEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcCCC-CCccEEEechHHHHHHHHHHHc---
Confidence 99999999998 478999999999999999999999999999999999999974 9999999999999999999996
Q ss_pred CCCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953 187 CGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260 (260)
Q Consensus 187 ~g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~ 260 (260)
|+.+++|++ +++||+|||||||+||+|+ |.||.+++++|++||||||||||.++ +.+++|+++|+++++|
T Consensus 155 -G~~~~~R~~~~~~gp~vTDnGN~IlD~~~~--i~dp~~l~~~L~~ipGVVe~GlF~~~-~~vivg~~~Gv~~i~k 226 (226)
T 3ixq_A 155 -GGEAVIRLGDRKRGPVITDNGNMIIDVFMN--IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK 226 (226)
T ss_dssp -TCEEEECBCSSSSSBCBCTTSCEEEEEECC--CSCHHHHHHHHHTSTTEEEESEECCC-SEEEEEETTEEEEECC
T ss_pred -CCCceEEeeccCCCceEecCCCEEEEecCC--CCCHHHHHHHHhCCCCEEeeCcccCC-CEEEEEeCCeEEEEeC
Confidence 999999986 5789999999999999873 89999999999999999999999985 8899999999999986
No 11
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=6.8e-64 Score=440.97 Aligned_cols=215 Identities=36% Similarity=0.558 Sum_probs=202.9
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPV 106 (260)
Q Consensus 28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~ 106 (260)
++++++|++||++|+++|++||+||||+|||+.+++++|+++. +++++ ||||.+++.++.+.|++++.+++.++
T Consensus 7 ~~~~~~K~~iA~~A~~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~~ 81 (224)
T 3kwm_A 7 NNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFDVVDLNYAGE 81 (224)
T ss_dssp CCHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCCBCCHHHHCS
T ss_pred cChHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCeEEecCcccc
Confidence 4578999999999999999999999999999999999998752 27998 99999999999999999999987789
Q ss_pred ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953 107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (260)
Q Consensus 107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~ 186 (260)
+|+||+|||+||++++++||++++++|||+++++|+++|+|+|+|||+++|| +||+||||+|++|.++.++|+++
T Consensus 82 iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l--- 156 (224)
T 3kwm_A 82 IDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL--- 156 (224)
T ss_dssp EEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC--SSCEEEEECGGGHHHHHHHHHHT---
T ss_pred ccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC--CCCeEEEEChHHHHHHHHHHHHc---
Confidence 9999999999999999999999999999999999999999999999999999 49999999999999999999996
Q ss_pred CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccccc-ccEEEEEcCCCeEEe
Q 024953 187 CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGVTIR 258 (260)
Q Consensus 187 ~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~-~~~viv~~~~g~~~~ 258 (260)
|+.++||+ +|+|||||||+||+|.+ |.||.+++++|++||||||||||.++ ++.+++|+++|++++
T Consensus 157 -g~~~~lR~----~~vTDnGn~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~~~~vi~g~~~g~~~~ 223 (224)
T 3kwm_A 157 -GGQPVYRE----QTITDNGNVILDVYNLK-IDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVV 223 (224)
T ss_dssp -TCEEEECT----TCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEECTTSCEEE
T ss_pred -CCCeEEec----CcCccCCCEEEEcCCCC-CCCHHHHHHHHcCCCCEeeeCcccCCcCCEEEEEcCCceEEe
Confidence 99999996 59999999999999995 99999999999999999999999985 799999999998875
No 12
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=4e-63 Score=435.44 Aligned_cols=216 Identities=35% Similarity=0.559 Sum_probs=201.5
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~~ 107 (260)
++.++|++||++|+++|+|||+||||+|||+.+++++|+++. + ++|+ ||||+.++.++.+.+++++.++..+++
T Consensus 2 ~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~la~~L~~~~--~---~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~ 76 (219)
T 1m0s_A 2 NQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIK--D---KIQGAVAASKESEELLRKQGIEVFNANDVSSL 76 (219)
T ss_dssp CHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTTG--G---GSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC--C---CEEEEECChHHHHHHHHhCCCeEEEeCccccC
Confidence 567899999999999999999999999999999999998641 1 5899 999999999998889999988765699
Q ss_pred cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953 108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (260)
Q Consensus 108 D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~ 187 (260)
|+||+||||+|++++++++++++++|||+++++|+++|+|+|||||+++||. +|||||||+|++|.++.++|+++
T Consensus 77 D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~-~~~lPvEV~p~~~~~v~~~l~~l---- 151 (219)
T 1m0s_A 77 DIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGS-TFPLPVEVIPMARSQVGRKLAAL---- 151 (219)
T ss_dssp EEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTS-SSCEEEEECGGGHHHHHHHHHHT----
T ss_pred CEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCC-CCCEEEEECcchHHHHHHHHHHc----
Confidence 9999999999999889999999999999998889999999999999999996 49999999999999999999997
Q ss_pred CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc-ccccEEEEEcCCCeEEec
Q 024953 188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL-DMATTVIVASELGVTIRN 259 (260)
Q Consensus 188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~-~~~~~viv~~~~g~~~~~ 259 (260)
|+.++||+ | |+|||||||+||+|.+ |.||.+++++|++||||||||||. ++++.+++|+++|++++.
T Consensus 152 g~~~~~R~---g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~~ 219 (219)
T 1m0s_A 152 GGSPEYRE---G-VVTDNGNVILDVHNFS-ILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVID 219 (219)
T ss_dssp TCEEEECT---T-CCCTTSCEEEEEESCC-CSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEEC
T ss_pred CCCcEeeC---c-eEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeccEecCCCCEEEEEeCCCeEEcC
Confidence 89999995 4 9999999999999985 999999999999999999999999 999999999999988763
No 13
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=1.6e-63 Score=437.97 Aligned_cols=216 Identities=38% Similarity=0.600 Sum_probs=158.2
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~~ 107 (260)
++.++|++||++|+++|+|||+||||+|||+.+++++|+++. .++|+ ||||+.++.++.+.+++++.++..+++
T Consensus 2 ~~~~~K~~IA~~Aa~lI~dg~~I~LdsGST~~~la~~L~~~~-----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~ 76 (219)
T 1o8b_A 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK-----GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSL 76 (219)
T ss_dssp ---------------------CEEECCSCC--------------------CCEEESCCC------------CCGGGCSCE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC-----CCEEEEECCcHHHHHHHHhCCCeEEEeCccCcC
Confidence 456789999999999999999999999999999999997641 15899 999999999998889999988765699
Q ss_pred cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953 108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (260)
Q Consensus 108 D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~ 187 (260)
|+||+||||+|++++++++++++++|||+++++|+++|+|+|||||+++|| +|||||||+|++|.++.++|+++
T Consensus 77 D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~l---- 150 (219)
T 1o8b_A 77 GIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG--KFPLPVEVIPMARSAVARQLVKL---- 150 (219)
T ss_dssp EEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHHHHT----
T ss_pred CEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC--CCcEEEEEChhHHHHHHHHHHHc----
Confidence 999999999999988899999999999999888999999999999999999 59999999999999999999997
Q ss_pred CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc-ccccEEEEEcCCCeEEecC
Q 024953 188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL-DMATTVIVASELGVTIRNK 260 (260)
Q Consensus 188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~-~~~~~viv~~~~g~~~~~~ 260 (260)
|+.++||+ | |+|||||||+||+|.+ |.||.+++++|++||||||||||. ++++.+++|+++|+++++|
T Consensus 151 g~~~~~R~---g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~~~ 219 (219)
T 1o8b_A 151 GGRPEYRQ---G-VVTDNGNVILDVHGME-ILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK 219 (219)
T ss_dssp TCEEEECT---T-CCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEEETTEEEEEC-
T ss_pred CCCcEeeC---c-eEeCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceeeeEecCCCCEEEEEeCCCeEEecC
Confidence 89999995 4 9999999999999985 999999999999999999999999 9999999999999998875
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.32 E-value=1.1e-11 Score=111.81 Aligned_cols=133 Identities=19% Similarity=0.127 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEEC-C------cHHHHHHHHhCCCcEEEcC
Q 024953 31 DELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIP-T------SKKTHEQAVSLGIPLSDLD 102 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVT-n------Sl~~a~~l~~~gi~v~~l~ 102 (260)
.+.|++||+.|+++|++|++|+ ++.|+|+..+++.+.+.. ++++|++ + +..++.+|.+.|++++.+.
T Consensus 93 ~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~-----~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~ 167 (276)
T 1vb5_A 93 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-----KRFKVILTESSPDYEGLHLARELEFSGIEFEVIT 167 (276)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-----CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcC-----CeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEc
Confidence 4679999999999999999999 999999999999986531 2688877 6 6678888988999988654
Q ss_pred CC------ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecC
Q 024953 103 SY------PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY 171 (260)
Q Consensus 103 ~~------~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~ 171 (260)
.. .++|++|+|||+|..+|++..--|.+.+...+ .+.+..+|+++|++||..... +..+|+|-.+.
T Consensus 168 dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A-~~~~vp~~V~a~~~K~~~~~~--~~~i~iE~r~~ 239 (276)
T 1vb5_A 168 DAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALAC-HENAIPFYVAAETYKFHPTLK--SGDVMLMERDL 239 (276)
T ss_dssp GGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHH-HHTTCCEEEECCGGGBCSSCC--GGGCCCCBCCC
T ss_pred HHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHH-HHcCCCEEEeccccccCcccC--ccccccccCCc
Confidence 21 27999999999999999876557777777554 456899999999999976521 35678777654
No 15
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=98.13 E-value=1.5e-05 Score=72.98 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEE-C-C-----cHHHHHHHHhCCCcEEEcCCC-
Q 024953 34 KKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGI-P-T-----SKKTHEQAVSLGIPLSDLDSY- 104 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvV-T-n-----Sl~~a~~l~~~gi~v~~l~~~- 104 (260)
+++||+.++++|++|++|. .+.++|+..+++...+. + ++++|+ + + ....+..|.+.|+++..+...
T Consensus 108 ~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Dsa 182 (315)
T 3ecs_A 108 RNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAA 182 (315)
T ss_dssp HHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGG
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehhH
Confidence 6789999999999999987 48888888888766543 1 134443 2 2 124677788899998765311
Q ss_pred -----ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953 105 -----PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169 (260)
Q Consensus 105 -----~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~ 169 (260)
.++|++|+|||.|..+|.+..--|...+- .+..+....+|+++.+.||....-.....+|+|..
T Consensus 183 ~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~ 251 (315)
T 3ecs_A 183 VGYIMEKADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFK 251 (315)
T ss_dssp HHHHGGGCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGT
T ss_pred HHHHHHhCCEEEECceEEecCCCeeehhhhHHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCcccc
Confidence 17999999999999998876554544442 22334567899999999997542111234565543
No 16
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=98.07 E-value=2.5e-06 Score=77.44 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhc----CcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECC
Q 024953 31 DELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (260)
Q Consensus 31 ~~~K~~IA~~Aa~l----I~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTn 83 (260)
.++|++||++|+++ |++|++|||++|||+..++++|.... ..+++++|++
T Consensus 89 ~~~k~~ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l 142 (315)
T 2w48_A 89 EEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPI 142 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEES
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEc
Confidence 34699999999997 99999999999999999999996421 1137899985
No 17
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=98.02 E-value=3.8e-05 Score=70.90 Aligned_cols=131 Identities=20% Similarity=0.177 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEE-C-Cc-----HHHHHHHHhCCCcEEEcCC-
Q 024953 33 LKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGI-P-TS-----KKTHEQAVSLGIPLSDLDS- 103 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvV-T-nS-----l~~a~~l~~~gi~v~~l~~- 103 (260)
..++|++.++++|++|++|.- +.++|++.+++...+. +. +++|+ + +- ..++.+|.+.|+++..+-.
T Consensus 127 ~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~---gk--~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Ds 201 (338)
T 3a11_A 127 ALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQ---GK--DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDS 201 (338)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHC---CC--eEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehH
Confidence 456799999999999999884 7777998888877643 11 23332 2 22 2467888899999876521
Q ss_pred -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953 104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP 170 (260)
Q Consensus 104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p 170 (260)
..++|++|+|||.|-.+|.+..--|...+- -+..+....+|++|.++||....-. +..+|+|-.+
T Consensus 202 a~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~~-g~~i~iE~r~ 271 (338)
T 3a11_A 202 AARHYMKMTDKVVMGADSITVNGAVINKIGTALIA-LTAKEHRVWTMIAAETYKFHPETML-GQLVEIEMRD 271 (338)
T ss_dssp GTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCEEEEECCGGGBCSCCSS-SSCCCCCBCC
T ss_pred HHHHHHHhCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEecccceecccCCC-CcccccccCC
Confidence 137999999999999999876544444432 2223456789999999999765332 3568887654
No 18
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=97.99 E-value=2.3e-06 Score=78.74 Aligned_cols=88 Identities=9% Similarity=0.064 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHhc----CcC-CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC-----------CcHHHHHHHH
Q 024953 29 TQDELKKIAAYKAVEF----VES-GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP-----------TSKKTHEQAV 92 (260)
Q Consensus 29 ~~~~~K~~IA~~Aa~l----I~d-g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT-----------nSl~~a~~l~ 92 (260)
+....|++||++|+++ |++ |++|||++|||+..++++|.... -..+++++|| ++..++..+.
T Consensus 119 ~~~~~k~~ia~~AA~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la 196 (345)
T 2o0m_A 119 IQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVMA 196 (345)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHHH
Confidence 3334799999999996 999 99999999999999999996420 0012799999 6667766664
Q ss_pred h-CCCcEEEc------C------------------CCccccEEEEccCccc
Q 024953 93 S-LGIPLSDL------D------------------SYPVVDLAIDGADEVD 118 (260)
Q Consensus 93 ~-~gi~v~~l------~------------------~~~~~D~af~GadgId 118 (260)
+ .|.+...+ . ...++|++|+|+.+.+
T Consensus 197 ~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~ 247 (345)
T 2o0m_A 197 NKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL 247 (345)
T ss_dssp HHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred HHhCCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence 3 24432211 0 0137999999998774
No 19
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=97.87 E-value=2.6e-05 Score=69.49 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH-----------HH-HHHhCCCcE---
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-----------HE-QAVSLGIPL--- 98 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~-----------a~-~l~~~gi~v--- 98 (260)
++.||+.|+++|+||+++.+|.| .-..++.++.+.. .+++++.+.+-.+ .. .+.. +...
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiG-iP~~va~~~~~~~----~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~~-~a~~~~~ 81 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTG-LPLIGASVAKRVY----APDCHIIVESGLMDCSPVEVPRSVGDLRFMA-HCGCIWP 81 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSS-HHHHHHHHHHHTT----CTTCEEEETTTEEEECCSSCCSSTTCHHHHT-SEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEeCCC-HHHHHHHHHHHhc----CCCEEEEEeCceecCcccCcccCccCCCcEe-ehhhhcC
Confidence 67999999999999999999999 7777888876521 1256666533100 00 0000 1000
Q ss_pred ----EEc-----CCCccccEEEEccCcccCCCCcc--------------cCcchhHHHHHHHHHhcCcEEEEEeCC--Cc
Q 024953 99 ----SDL-----DSYPVVDLAIDGADEVDPFMNLV--------------KGRGGSLLREKMVEGACKKFVVIVDES--KL 153 (260)
Q Consensus 99 ----~~l-----~~~~~~D~af~GadgId~~~~~i--------------~~~~~a~~kekii~~~A~~~IlLaD~s--Kf 153 (260)
..+ -+..++|++|+|+-+||..|+.- +|.|++.- +.+.|+++|++ +|+ ||
T Consensus 82 ~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D----~~~~A~~~iv~-~h~~rk~ 156 (260)
T 1poi_B 82 NVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRF 156 (260)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTB
T ss_pred HHHHhcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHH----HHhCCCEEEEE-ECCCCee
Confidence 011 12347899999999999877532 33344332 23568888888 887 78
Q ss_pred ccCCC
Q 024953 154 VPHLG 158 (260)
Q Consensus 154 ~~~lg 158 (260)
++++.
T Consensus 157 V~~v~ 161 (260)
T 1poi_B 157 MNKID 161 (260)
T ss_dssp CSSCS
T ss_pred cccCc
Confidence 87654
No 20
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.80 E-value=8.1e-05 Score=70.82 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~ 87 (260)
.+.+++||+.|+++|+||+++.+|.|++...++.+|.++ +++.+.|.-+..
T Consensus 193 ~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~ 243 (439)
T 3d3u_A 193 SDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTD 243 (439)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCH
T ss_pred ChHHHHHHHHHHHhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecc
Confidence 366899999999999999999999999999999999865 378888875543
No 21
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.77 E-value=0.00014 Score=67.40 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECC-Ch--------hHHHHHHHHHhHHhcCCCCCEEEECCc--H------HHHHHHHhC
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGT-GS--------TAKHAVDRIGELLRQGKLTNIVGIPTS--K------KTHEQAVSL 94 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~Lgs-GS--------T~~~la~~L~~~~~~~~l~~itvVTnS--l------~~a~~l~~~ 94 (260)
+..++|++.++++|++|++|.-=+ +. |+..+++...++ + ++++|+... . .++.+|.+.
T Consensus 133 ~~~~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~ 207 (347)
T 1t9k_A 133 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKD 207 (347)
T ss_dssp HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHHHHHHHhC
Confidence 346679999999999999988633 22 888888776543 1 145543321 1 257788889
Q ss_pred CCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccE
Q 024953 95 GIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV 166 (260)
Q Consensus 95 gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPv 166 (260)
|+++..+- +...+|++|+|||.|-.+|.+..--|...+- .+..+....+|+++.++||....-. +..+|+
T Consensus 208 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~i 285 (347)
T 1t9k_A 208 GIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRS-GEEIPI 285 (347)
T ss_dssp TCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeccccCC-cccccc
Confidence 99887653 1224999999999999999876444444432 2223456789999999999765332 256888
Q ss_pred EEec
Q 024953 167 EVVP 170 (260)
Q Consensus 167 EV~p 170 (260)
|-.+
T Consensus 286 E~r~ 289 (347)
T 1t9k_A 286 EERR 289 (347)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 7654
No 22
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=97.72 E-value=0.00011 Score=68.60 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-C-CcH------HHHHHHHhCC
Q 024953 33 LKKIAAYKAVEFVESGMVLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-P-TSK------KTHEQAVSLG 95 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-T-nSl------~~a~~l~~~g 95 (260)
..++|++.++++|++|++|.-= +| +|++.+++...++ +. +++|+ + +-. .++.+|.+.|
T Consensus 159 ~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rltA~eL~~~G 233 (374)
T 2yvk_A 159 TCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---DL--GLHIYACETRPVLQGSRLTAWELMQGG 233 (374)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---CC--EEEEEEeCCCCccccHHHHHHHHHHcC
Confidence 4566999999999999999873 22 3777777776543 21 33333 2 211 2577888899
Q ss_pred CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
+++..+- +...+|++|+|||.|-.+|.+..--|...+- -+..+....||++|.++||..+.-. +..+|+|
T Consensus 234 IpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~iE 311 (374)
T 2yvk_A 234 IDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKC-GADIPIE 311 (374)
T ss_dssp CEEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCCC
T ss_pred CCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeCccCCC-ccccccc
Confidence 9887653 1124999999999999999876444444432 2223456789999999999765432 2568887
Q ss_pred Eec
Q 024953 168 VVP 170 (260)
Q Consensus 168 V~p 170 (260)
-.+
T Consensus 312 er~ 314 (374)
T 2yvk_A 312 ERD 314 (374)
T ss_dssp BCC
T ss_pred cCC
Confidence 754
No 23
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.69 E-value=0.00015 Score=68.08 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCc--------CCCEEEECC--C-------hhHHHHHHHHHhHHhcCCCCCEEEECCc--------HHH
Q 024953 33 LKKIAAYKAVEFVE--------SGMVLGLGT--G-------STAKHAVDRIGELLRQGKLTNIVGIPTS--------KKT 87 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~--------dg~~I~Lgs--G-------ST~~~la~~L~~~~~~~~l~~itvVTnS--------l~~ 87 (260)
..++|++.++++|+ +|++|.-=+ | +|++.+++...++ + ++++|+... -.+
T Consensus 155 ~~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qGarlt 229 (383)
T 2a0u_A 155 FNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPWNQGARLT 229 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHTH
T ss_pred HHHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHc---C--CeEEEEEeCCCCccchHHHH
Confidence 35669999999999 999998632 2 3788888777543 1 134443321 126
Q ss_pred HHHHHhCCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCC
Q 024953 88 HEQAVSLGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGG 159 (260)
Q Consensus 88 a~~l~~~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~ 159 (260)
+.+|.+.|+++..+- +...+|++|+|||.|-.+|.+..--|...+- -+..+....||+++..+||..+.-.
T Consensus 230 A~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~ 308 (383)
T 2a0u_A 230 VYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTAS 308 (383)
T ss_dssp HHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCCS
T ss_pred HHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEeCCcceecCcCCC
Confidence 778888999987653 1124999999999999999876444444432 2223456789999999999765432
Q ss_pred CCccccEEEec
Q 024953 160 SGLAMPVEVVP 170 (260)
Q Consensus 160 ~~~~lPvEV~p 170 (260)
+..+|+|-.+
T Consensus 309 -g~~i~iEer~ 318 (383)
T 2a0u_A 309 -GNHVEIEERE 318 (383)
T ss_dssp -GGGSCCCBCC
T ss_pred -ccccccccCC
Confidence 2578887654
No 24
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=97.67 E-value=0.00027 Score=65.55 Aligned_cols=129 Identities=22% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCcCCCEEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-C-CcH------HHHHHHHhCC
Q 024953 33 LKKIAAYKAVEFVESGMVLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-P-TSK------KTHEQAVSLG 95 (260)
Q Consensus 33 ~K~~IA~~Aa~lI~dg~~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-T-nSl------~~a~~l~~~g 95 (260)
..++|++.++++|++|++|.-= +| +|+..+++...++ +. +++|+ + +-. .++.+|.+.|
T Consensus 132 ~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rlta~eL~~~G 206 (351)
T 1t5o_A 132 RNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQ---GK--EIRVIACETRPLNQGSRLTCWELMEDG 206 (351)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCccccccCCChHHHHHHHHHHC---CC--EEEEEEeCCCcccccHHHHHHHHHhCC
Confidence 4566999999999999999873 22 3677777776543 21 33333 2 221 2577888899
Q ss_pred CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953 96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE 167 (260)
Q Consensus 96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE 167 (260)
+++..+- +...+|++|+|||.|-.+| ...--|...+- -+..+....+|++|.++||... -. +..+|+|
T Consensus 207 I~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~-~~-g~~i~iE 282 (351)
T 1t5o_A 207 IDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVS-VVAKHHNIPFYVAAPKATFDWE-RT-AKDVVIE 282 (351)
T ss_dssp CCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTT-CC-GGGCCCC
T ss_pred CCEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHH-HHHHHcCCCEEEeCccceeccc-cC-CCccccc
Confidence 9987653 1224999999999999999 65434443332 2223456789999999999765 32 3578888
Q ss_pred Eec
Q 024953 168 VVP 170 (260)
Q Consensus 168 V~p 170 (260)
-.+
T Consensus 283 er~ 285 (351)
T 1t5o_A 283 ERP 285 (351)
T ss_dssp BCC
T ss_pred cCC
Confidence 654
No 25
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=97.47 E-value=0.00061 Score=59.78 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 38 AYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
|++|+++|+|||+|++|. | -+...++++|.++ + .+++|+++||
T Consensus 11 a~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~kdLtli~~~ 56 (235)
T 3rrl_A 11 LDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK---G-IKDLIVVSNN 56 (235)
T ss_dssp THHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc---C-CCcEEEEEcC
Confidence 677889999999999985 2 2567788889765 2 3589999985
No 26
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.45 E-value=2.8e-05 Score=67.15 Aligned_cols=108 Identities=24% Similarity=0.305 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----------HHHhCCC---cEE
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----------QAVSLGI---PLS 99 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----------~l~~~gi---~v~ 99 (260)
|+.||++|++.++||++|.||.| .-..++.+++ . +++++.+.+-..-. .+.+.|- ...
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIG-iP~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~ 73 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIG-LPTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV 73 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTT-GGGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCC-hHHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence 78899999999999999999999 4555666665 2 25666655432110 0001111 111
Q ss_pred ----EcC--------CCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEeCCCc
Q 024953 100 ----DLD--------SYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGACKKFVVIVDESKL 153 (260)
Q Consensus 100 ----~l~--------~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A~~~IlLaD~sKf 153 (260)
.++ +..++|++|+|+-+||..|+. +++.|++.- +.+.|+++|++.+|++-
T Consensus 74 ~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d----~~~~A~~vi~~~~~t~k 144 (207)
T 3rrl_B 74 PGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMD----LVHGAKKVIVIMEHCNK 144 (207)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHH----HHHHSSEEEEECCSBCT
T ss_pred CCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHH----HHhCCCEEEEEEeeecC
Confidence 111 345899999999999987642 344444332 23568999999999864
No 27
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.44 E-value=0.00067 Score=58.67 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
+++|+++|+|||+|++|.. .+-..+.++|.++ .++++|+++++.
T Consensus 8 a~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~----~~~dLtl~~~~~ 54 (220)
T 1k6d_A 8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDT 54 (220)
T ss_dssp HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSBC
T ss_pred HHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC----CCCCEEEEEecC
Confidence 6789999999999999863 3467888888765 235899998863
No 28
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=97.28 E-value=0.00096 Score=58.59 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
+++|+++|+|||+|++|.- .+-..++++|.++ ..+++|+++++
T Consensus 11 a~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~----~~~dLtl~~~~ 56 (241)
T 3cdk_A 11 SKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ----GVKDLTVVSNN 56 (241)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEEESS
T ss_pred HHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc----CCCCEEEEEec
Confidence 6788899999999999862 3667888889865 23589999874
No 29
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.02 E-value=0.0009 Score=63.56 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=76.9
Q ss_pred HHHHHHHHHH-hcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----HHHhCCCcE-------
Q 024953 33 LKKIAAYKAV-EFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----QAVSLGIPL------- 98 (260)
Q Consensus 33 ~K~~IA~~Aa-~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----~l~~~gi~v------- 98 (260)
.|..-|++|+ ++|+|||+|+++.+. +...++++|.++. ..++++|++++...... .+. ..+..
T Consensus 9 ~K~~sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~--~~~~dLtli~~~~~~~~~~~~~~l~-~~i~~~~~~~g~ 85 (439)
T 3d3u_A 9 QRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQR--EKLENITVFHMLYFGDAPHLAPEMR-SHVHPTLNFLEG 85 (439)
T ss_dssp HHBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTT--TTCCSEEEECSCBSSCCTTSSGGGT-TTEEEEC-----
T ss_pred cCCCcHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhh--CCCCCEEEEEecCCCcchhccHHhC-CcEEEEECCCCh
Confidence 3555688999 999999999999885 6678999998653 12458999987422110 111 00100
Q ss_pred -------------EE---------c-CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953 99 -------------SD---------L-DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152 (260)
Q Consensus 99 -------------~~---------l-~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sK 152 (260)
.. + ...+++|+||+.+...|.+|++..+. ...+... ++++|+++|+-+++..
T Consensus 86 ~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~-s~~~~~~-~~~aA~~VIveVn~~v 160 (439)
T 3d3u_A 86 NSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGV-SCDYTKA-AAECAPVVVAEVNKQM 160 (439)
T ss_dssp ---------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTT-BCBTHHH-HHHHCSEEEEEEESSS
T ss_pred HHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEec-cccchHH-HHhhCCeEEEEECCCC
Confidence 00 1 13368999999999999999876643 2223333 3467999999999877
No 30
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=96.97 E-value=0.0033 Score=60.10 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCCCCCC-hHHHHHH--HHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCc-HH--HHHHHH---
Q 024953 23 PPPVILT-QDELKKI--AAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTS-KK--THEQAV--- 92 (260)
Q Consensus 23 ~~~~m~~-~~~~K~~--IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS-l~--~a~~l~--- 92 (260)
+|.-|++ .++.|.+ =|++|+++|++||+|+++.+. +-..+.++|.++...+.++++++++.- .- ....+.
T Consensus 11 ~~~~~m~~~~~y~~K~vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~ 90 (455)
T 3qli_A 11 VPRGSMDIRALYDEKLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYEL 90 (455)
T ss_dssp -----CCHHHHHHHHBCCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGG
T ss_pred CcCCccCHHHHHHhcCCCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhh
Confidence 3444444 3333333 489999999999999998764 336788899876432345689997632 11 111111
Q ss_pred -------------------hCC--------CcEEEc---------CCCccccEEEEccCcccCCCCcccCcchhHHHHHH
Q 024953 93 -------------------SLG--------IPLSDL---------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKM 136 (260)
Q Consensus 93 -------------------~~g--------i~v~~l---------~~~~~~D~af~GadgId~~~~~i~~~~~a~~keki 136 (260)
+.| ...+.. ....++|+||+.+...|.+|++..+...... ..
T Consensus 91 ~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~g~s~~~~--~~ 168 (455)
T 3qli_A 91 NNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSLGVGNDYS--SR 168 (455)
T ss_dssp TTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEECTTBCBTH--HH
T ss_pred cCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEEccCCCch--HH
Confidence 001 111111 1234789999999999999887655433222 22
Q ss_pred HHHhcCcEEEEEeC
Q 024953 137 VEGACKKFVVIVDE 150 (260)
Q Consensus 137 i~~~A~~~IlLaD~ 150 (260)
++.+|+++|+-++.
T Consensus 169 ~a~~Ak~VI~EVN~ 182 (455)
T 3qli_A 169 IARSARRFIVEVNR 182 (455)
T ss_dssp HHHHSSEEEEEECT
T ss_pred HHhhcCEEEEEecC
Confidence 34568988887765
No 31
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=96.42 E-value=0.011 Score=53.72 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHHH-hcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 38 AYKAV-EFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 38 A~~Aa-~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
+++|+ ++|+|||+|++|.- .+-..++++|.++ ..+++|++.++
T Consensus 6 a~eAv~~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~~dLtlv~~~ 52 (317)
T 1poi_A 6 LKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ----GITDLTGLGGA 52 (317)
T ss_dssp HHHHHHHHCCTTCEEEECSBTTBSCCHHHHHHHHHT----TCCCEEEECSE
T ss_pred HHHHHHhhCCCCCEEEECCccccCcHHHHHHHHHhC----CCCCEEEEEEC
Confidence 56677 89999999999862 3467888888754 23589999654
No 32
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=96.17 E-value=0.015 Score=56.22 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECC-cHH--HH-HHHHhCCCcEE-------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPT-SKK--TH-EQAVSLGIPLS------- 99 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTn-Sl~--~a-~~l~~~gi~v~------- 99 (260)
|..=|++|+++|+|||+|++|.. .+-..+.++|.++..+.++ +++++++ |.- .. .++....++..
T Consensus 14 Kv~saeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl-~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~ 92 (497)
T 2g39_A 14 KVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS 92 (497)
T ss_dssp GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred ccCcHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCc-eEEEEecccccccchHHHhcCCceEEEEeeCCCH
Confidence 33347889999999999999853 2445777888765321233 4899986 321 11 22222222111
Q ss_pred ------------E------------cCCCc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953 100 ------------D------------LDSYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (260)
Q Consensus 100 ------------~------------l~~~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s 151 (260)
. ....+ ++|+||+-+...|.+|++..+...... ..++++|+++|+-++..
T Consensus 93 ~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIvEVn~~ 167 (497)
T 2g39_A 93 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNS--ASFAIFAKQVIVEINLA 167 (497)
T ss_dssp HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTH--HHHHHHSSEEEEEEETT
T ss_pred HHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcccH--HHHHHhCCeEEEEEcCC
Confidence 0 01234 699999999999999988765433222 33456789988888763
No 33
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=96.15 E-value=0.0093 Score=58.01 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCcCCCEEEECCC----hhHHHHHHHHHhHHh-cCCCCCEEEECCcH
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTG----STAKHAVDRIGELLR-QGKLTNIVGIPTSK 85 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsG----ST~~~la~~L~~~~~-~~~l~~itvVTnSl 85 (260)
|..=+++|+++|+|||+|++|.- .+-..++++|.++.. .+..+++|+++++.
T Consensus 14 K~~sa~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~ 70 (531)
T 2ahu_A 14 PVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG 70 (531)
T ss_dssp CBCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred ccCCHHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence 44457889999999999999762 246778888876521 12346899988653
No 34
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=96.02 E-value=0.012 Score=56.98 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=71.5
Q ss_pred HHHHHhc--CcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHhC---------------
Q 024953 38 AYKAVEF--VESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVSL--------------- 94 (260)
Q Consensus 38 A~~Aa~l--I~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~~--------------- 94 (260)
|++|+++ |+|||+|+++.+. +-..++++|.++..+.+++++|++++|.- .+..+...
T Consensus 49 aeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~r 128 (509)
T 1xr4_A 49 LEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLG 128 (509)
T ss_dssp HHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHHH
T ss_pred HHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHHH
Confidence 8889999 9999999998664 45567777776543334569999987652 22222211
Q ss_pred --------CCcEEEc----------CCCccccEEEEccCcccCCCCccc--Cc---chhHHHHHHHHHhcCcEEEEEeC
Q 024953 95 --------GIPLSDL----------DSYPVVDLAIDGADEVDPFMNLVK--GR---GGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 95 --------gi~v~~l----------~~~~~~D~af~GadgId~~~~~i~--~~---~~a~~kekii~~~A~~~IlLaD~ 150 (260)
.++.... ...+.+|+||+.+...|.+|++.. +. ....+- ..++.+|+++|+-+++
T Consensus 129 ~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~-~a~a~~A~~VIaEVn~ 206 (509)
T 1xr4_A 129 EEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYA-QVDAQYAKCVVLLTEE 206 (509)
T ss_dssp HHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTH-HHHHHHCSEEEEEESC
T ss_pred HHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHH-HHHHhhCCEEEEEeCC
Confidence 0111111 133579999999999999998764 31 111122 3345678888777765
No 35
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=95.96 E-value=0.027 Score=53.40 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH----HHH-HHHhCCCcEEE-----------
Q 024953 38 AYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK----THE-QAVSLGIPLSD----------- 100 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~----~a~-~l~~~gi~v~~----------- 100 (260)
+++|+++|+|||+|+++.+. +...++++|.++.+ .++++|+++++.. ... .+ ...+....
T Consensus 9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~~lr~~i 85 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGVPTRPLL 85 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCTTTHHHH
T ss_pred HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCHHHHHHH
Confidence 67899999999999998541 35678888886632 1358999985421 011 11 11111110
Q ss_pred -------------------cCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 101 -------------------LDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 101 -------------------l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
....+.+|+||+.+...|.+|++..+... ..- ..++++|+++|+-++.
T Consensus 86 ~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~-~~~-~~~a~aA~~VIveVn~ 152 (436)
T 2oas_A 86 QSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISV-EAT-LAACQVAGKIIAHINP 152 (436)
T ss_dssp HTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBC-TTH-HHHHHHCSEEEEEECT
T ss_pred HcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCc-CcH-HHHHHhcCeEEEEEcC
Confidence 01336899999999999999987765332 222 2334678888877776
No 36
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=95.85 E-value=0.042 Score=53.13 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHh----cCCCCCEEEECCcH---HHHHHHHhC---------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLR----QGKLTNIVGIPTSK---KTHEQAVSL--------- 94 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~----~~~l~~itvVTnSl---~~a~~l~~~--------- 94 (260)
|.-=|++|+++|++||+|+++. | .+-..+.++|.++.. .+...++++++... .....+...
T Consensus 13 KlvSaeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~ 92 (514)
T 4eu9_A 13 KVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPF 92 (514)
T ss_dssp GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESC
T ss_pred CCCcHHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEec
Confidence 3334889999999999999973 2 133456666655421 12122577776432 111122211
Q ss_pred -------------CCcEEEc-----------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 95 -------------GIPLSDL-----------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 95 -------------gi~v~~l-----------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
.+..+.. .....+|+||+.+...|.+|++..+......+ .+ .++|+++|+-++.
T Consensus 93 ~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~~-~~-~~~A~~VIvevn~ 170 (514)
T 4eu9_A 93 NTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQ-TF-LNLAEKVIIEVNE 170 (514)
T ss_dssp CCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTHH-HH-HHHCSEEEEEEET
T ss_pred CCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchHH-HH-HHhCCeEEEEEec
Confidence 1111111 12247999999999999999987664433333 33 4579999998886
Q ss_pred C
Q 024953 151 S 151 (260)
Q Consensus 151 s 151 (260)
.
T Consensus 171 ~ 171 (514)
T 4eu9_A 171 W 171 (514)
T ss_dssp T
T ss_pred C
Confidence 4
No 37
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=95.79 E-value=0.021 Score=55.22 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHhcCcCCCEEEECCCh---hHHHHHHHHHhHHhc-----CCCCCEEEECCc-HH--HH-HHHHhCCCcEEE-----
Q 024953 38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQ-----GKLTNIVGIPTS-KK--TH-EQAVSLGIPLSD----- 100 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsGS---T~~~la~~L~~~~~~-----~~l~~itvVTnS-l~--~a-~~l~~~gi~v~~----- 100 (260)
|++|+++|+|||+|+++..+ +-..+.++|.++..+ .++ ++|++++. .. .. .++....++...
T Consensus 8 aeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~-~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~ 86 (506)
T 2nvv_A 8 AEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPF-KIGMFTGASTGARLDGVLAQADAVKFRTPYQSN 86 (506)
T ss_dssp HHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCC-CEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred HHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCc-eEEEEEecCCCcchhHHhccCCceEEEeeeCCC
Confidence 67888999999999998542 344666777655321 133 69998852 21 11 222222222110
Q ss_pred --------------------------cCCCc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953 101 --------------------------LDSYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (260)
Q Consensus 101 --------------------------l~~~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s 151 (260)
....+ ++|+||+-+...|.+|++..+...... ..++++|+++|+-++..
T Consensus 87 ~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIveVn~~ 162 (506)
T 2nvv_A 87 KDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGIL--PTICRLADRIIVELNDK 162 (506)
T ss_dssp HHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTH--HHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcCcH--HHHHHhCCcEEEEECCC
Confidence 01234 699999999999999987765333222 33456789888888763
No 38
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=95.72 E-value=0.033 Score=53.08 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECC-cHH----HHHHHHh--------------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPT-SKK----THEQAVS-------------- 93 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTn-Sl~----~a~~l~~-------------- 93 (260)
|..=|++|+++|++||+|+++.+. +-..+.++|.++.. .++++++++. |+. ....+..
T Consensus 10 Kl~saeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~r 87 (448)
T 3gk7_A 10 RTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTR 87 (448)
T ss_dssp TBCCHHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTTTH
T ss_pred cCCCHHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHHHH
Confidence 444588999999999999998754 34667788876632 3568998876 322 1111111
Q ss_pred -----CCCcEEE--c--------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 94 -----LGIPLSD--L--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 94 -----~gi~v~~--l--------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
..+..+. + ...+++|+||+.+...|.+|++..+..-... ..++++|+++|+-++.
T Consensus 88 ~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~~--~~~a~~A~~VI~eVn~ 157 (448)
T 3gk7_A 88 GSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYT--MQAIKSAKIVLAEVND 157 (448)
T ss_dssp HHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBTH--HHHHHHCSEEEEEEET
T ss_pred hHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCCcChH--HHHHHhCCeEEEEeec
Confidence 1111111 1 1235899999999999999988765332222 2344678988888875
No 39
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=95.72 E-value=0.027 Score=53.40 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHh------C-------
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVS------L------- 94 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~------~------- 94 (260)
|..=|++|+++|++||+|+++.+. +-..+.++|.++. ..++++++++.... ....+.+ .
T Consensus 14 K~~saeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~--~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 91 (434)
T 3eh7_A 14 RIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQA--DLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSR 91 (434)
T ss_dssp GEECHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHST--TTC--CEEECCBCTTCC-----------------------
T ss_pred cCCcHHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhH--hhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHHH
Confidence 444588999999999999998643 4567888888763 23568888875321 1111110 0
Q ss_pred ------CCcEEE--c--------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 95 ------GIPLSD--L--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 95 ------gi~v~~--l--------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
.+..+. + ...+++|+||+.+...|.+|++..+..-. .- ..++.+|+++|+-++.
T Consensus 92 ~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~-~~-~~~~~~A~~VI~eVn~ 161 (434)
T 3eh7_A 92 KAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCD-YS-KPAAESAHLVIGEINR 161 (434)
T ss_dssp ------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCT-TH-HHHHHHCSEEEEEEET
T ss_pred HHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCccc-hH-HHHHHhCCeEEEEecC
Confidence 000000 1 12358999999999999999876553222 22 2334578988888775
No 40
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=95.43 E-value=0.011 Score=52.21 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=36.6
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhH
Q 024953 24 PPVILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 24 ~~~m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
|+.-.+.+..++.+|+.|++ ++++|++|+++.|+|+..++++|...
T Consensus 33 p~~~~~~~~~~~~lg~~aA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~ 82 (266)
T 3efb_A 33 SGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQA 82 (266)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCC
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCcc
Confidence 44334556667788888887 56899999999999999999999643
No 41
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=95.41 E-value=0.018 Score=51.02 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 30 QDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
.++.++.+|+.|++ ++++|++|+++.|+|+..++++|... ..+++++|+
T Consensus 35 ~~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~----~~~~~~vV~ 87 (267)
T 3nze_A 35 EAETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRK----MTHDSIVVQ 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCCC----CCSSCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHhcCcc----CCCCCEEEE
Confidence 44567788888887 56899999999999999999999643 123677764
No 42
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=95.21 E-value=0.015 Score=51.38 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHh
Q 024953 30 QDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 30 ~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~ 68 (260)
.++.++.+|+.|++ ++++|++|+++.|+|+..++++|..
T Consensus 34 ~~~~~~~lg~aaA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~ 76 (267)
T 3kv1_A 34 TNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGI 76 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCC
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHhccc
Confidence 34557788888887 5689999999999999999999964
No 43
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=95.08 E-value=0.14 Score=49.59 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=67.5
Q ss_pred HHHHHHhc--CcCCCEEEECCCh-hHH----HHHHHHHhHHhcCCCCCEEEECCcHHHH-----HHHHhC----------
Q 024953 37 AAYKAVEF--VESGMVLGLGTGS-TAK----HAVDRIGELLRQGKLTNIVGIPTSKKTH-----EQAVSL---------- 94 (260)
Q Consensus 37 IA~~Aa~l--I~dg~~I~LgsGS-T~~----~la~~L~~~~~~~~l~~itvVTnSl~~a-----~~l~~~---------- 94 (260)
=|++|+++ |+|||+|+++..+ +-. .+.++|.++ .++++|++++|.-.. ......
T Consensus 51 saeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~ 126 (519)
T 2hj0_A 51 SIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGL 126 (519)
T ss_dssp CHHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBC
T ss_pred CHHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCC
Confidence 47888898 9999999998763 222 456666653 245899999865211 111211
Q ss_pred ----------C---CcEEE---------cC-CCccccEEEEccCcccCCCCccc--Ccc---hhHHHHHHHHHhcCcEEE
Q 024953 95 ----------G---IPLSD---------LD-SYPVVDLAIDGADEVDPFMNLVK--GRG---GSLLREKMVEGACKKFVV 146 (260)
Q Consensus 95 ----------g---i~v~~---------l~-~~~~~D~af~GadgId~~~~~i~--~~~---~a~~kekii~~~A~~~Il 146 (260)
| ++... +. ..+.+|+||+.+...|.+|++.. +.. ....- ..++++|+++|+
T Consensus 127 g~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~-~~~a~~A~~VIa 205 (519)
T 2hj0_A 127 RDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYA-MIDAKYADQVVI 205 (519)
T ss_dssp HHHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHH-HHHHHHCSEEEE
T ss_pred CcHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhh-HHHHhhCCEEEE
Confidence 1 01110 11 23579999999999999998763 422 12333 344567888877
Q ss_pred EEeC
Q 024953 147 IVDE 150 (260)
Q Consensus 147 LaD~ 150 (260)
-++.
T Consensus 206 EVn~ 209 (519)
T 2hj0_A 206 VTDT 209 (519)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7765
No 44
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=94.79 E-value=0.044 Score=46.41 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=44.5
Q ss_pred cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953 106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP 170 (260)
Q Consensus 106 ~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p 170 (260)
.+|++|+|||.|-.+|.+..--|...+- .+..+....+|++|.++||..+.-. +..+|+|-.+
T Consensus 51 ~Vd~VivGAd~v~~nG~v~nkiGT~~~A-l~Ak~~~vPf~V~a~~~k~~~~~~~-g~~i~iE~r~ 113 (191)
T 1w2w_B 51 PIKAAFVGADRIVRNGDTANKIGTLQLA-VICKQFGIKFFVVAPKTTIDNVTET-GDDIIVEERN 113 (191)
T ss_dssp CEEEEEECCSEECTTSCEEEETTHHHHH-HHHHHHTCEEEEECCGGGBCSSCCS-GGGCCCCBCC
T ss_pred CCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeeeccCC-cceeecccCC
Confidence 3999999999999998876544444432 2223456789999999999765432 2567887654
No 45
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=94.79 E-value=0.079 Score=50.94 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH----------HH-HHHhCC---Cc
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT----------HE-QAVSLG---IP 97 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~----------a~-~l~~~g---i~ 97 (260)
+.++.||+.|++.|+||++|.||.| --..++.++.+. +++++.+-+-.. .. .+.+.| ..
T Consensus 261 ~~~~~Ia~raA~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~t 333 (481)
T 3k6m_A 261 NVRERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETVT 333 (481)
T ss_dssp -CHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBCC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCcccccCCCceEe
Confidence 4578999999999999999999999 444566665432 145544321100 00 000111 11
Q ss_pred EE----EcC--------CCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhc-CcEEEEEeCCC
Q 024953 98 LS----DLD--------SYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGAC-KKFVVIVDESK 152 (260)
Q Consensus 98 v~----~l~--------~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A-~~~IlLaD~sK 152 (260)
.. .++ +.-++|++|+|+-+||..|+. ++|.|++.- +.+.| +++|+...|+.
T Consensus 334 ~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D----~~~ga~~k~ii~~~~t~ 406 (481)
T 3k6m_A 334 VLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEHSA 406 (481)
T ss_dssp EEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHH----HTCCTTSEEEEECCSBC
T ss_pred ccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchh----hhccCCceEEEEEeeEc
Confidence 11 011 234899999999999987642 344445432 23457 58888888764
No 46
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=94.47 E-value=0.15 Score=48.97 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953 38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS 84 (260)
Q Consensus 38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 84 (260)
+++|+++|+|||+|.+|.- .+-..++++|.++ +. +++|+|.|+
T Consensus 7 ~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~---~~-kdLt~v~~~ 52 (481)
T 3k6m_A 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT---GV-KELTAVSNN 52 (481)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---CC-CSEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc---CC-CceEEEEeC
Confidence 5678889999999999862 2457788888764 22 589999885
No 47
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=94.46 E-value=0.14 Score=49.67 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH-HhcCCCCCEEEECCc-----HHHHHHHHhCCCcE---EEcC--
Q 024953 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL-LRQGKLTNIVGIPTS-----KKTHEQAVSLGIPL---SDLD-- 102 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~-~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v---~~l~-- 102 (260)
+++||+.++++|+||+++.+|.| ....++.+|.+. .. +++++.+-+ ....... .+... ..+.
T Consensus 288 ~~~Ia~~~A~~i~dG~~v~lGiG-iP~av~~~l~~~~~~----~~l~~~~E~G~~g~~~~~g~~--~g~~~~~~~~~~~~ 360 (531)
T 2ahu_A 288 RKLVARRALFEMRKGAVGNVGVG-IADGIGLVAREEGCA----DDFILTVETGPIGGITSQGIA--FGANVNTRAILDMT 360 (531)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSS-TTTTHHHHHHHHTCG----GGSEEBCTTSEESCBCC-------CCCBSCSEECCHH
T ss_pred HHHHHHHHHHhccCCCEEEecCc-HHHHHHHHHHhcCCC----CCeEEEEccceecCccCCCcc--ceeEECHHHhcchh
Confidence 67899999999999999999999 666788888762 10 134443311 0000000 01100 0110
Q ss_pred ------CCccccEEEEccCcccCCCCc--------ccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953 103 ------SYPVVDLAIDGADEVDPFMNL--------VKGRGGSLLREKMVEGACKKFVVIVDE 150 (260)
Q Consensus 103 ------~~~~~D~af~GadgId~~~~~--------i~~~~~a~~kekii~~~A~~~IlLaD~ 150 (260)
+..++|++|+|+-+||..|+. +.|.|++.= +.+.|++.|+...|
T Consensus 361 ~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~D----~~~gA~~~i~~~~~ 418 (531)
T 2ahu_A 361 SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFID----ISATSKKIIFCGTL 418 (531)
T ss_dssp HHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHH----HHTTCSEEEEECCS
T ss_pred hhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcchh----hhcCCCeEEEEecc
Confidence 234799999999999987653 344444332 23568888877764
No 48
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=94.33 E-value=0.048 Score=48.08 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=35.2
Q ss_pred HHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 33 LKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 33 ~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
.++.+++.|++ +|+++++|+|++|+|...++++|... ..+++++|.
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~----~~~~v~~v~ 88 (266)
T 2gnp_A 39 LSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP 88 (266)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhcccc----CCCCCEEEE
Confidence 46777777776 56899999999999999999999642 123666654
No 49
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=94.11 E-value=0.55 Score=45.28 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+.+++||+.|+++| +||+++=+|.|+....++.+|.+.
T Consensus 248 ~~~~~IA~~~a~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~ 291 (509)
T 1xr4_A 248 PRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDK 291 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCCEEEeccChHHHHHHHHhhhh
Confidence 55789999999999 999999999999888899999875
No 50
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=93.81 E-value=0.35 Score=46.84 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+.+++||+.|+++| +||+++-+|.|+....++.+|.++
T Consensus 251 ~~~~~IA~~~a~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~ 294 (519)
T 2hj0_A 251 PKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ 294 (519)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence 45788999999985 999999999998888888888776
No 51
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=93.72 E-value=0.04 Score=48.27 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 33 LKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 33 ~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
.++.++++|++ +|+++++|+|++|+|...++++|.... ..+++++|.
T Consensus 38 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~---~~~~v~~v~ 88 (255)
T 2okg_A 38 VKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS---KNRELLFVP 88 (255)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT---TCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhhcccc---CCCCCEEEE
Confidence 35667776665 568999999999999999999996421 123566654
No 52
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=93.64 E-value=0.42 Score=45.18 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+.+++||+.|+++|+||+++=+|.|+....++.+|.++
T Consensus 188 ~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~ 225 (436)
T 2oas_A 188 AVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGH 225 (436)
T ss_dssp HHHHHHHHHHHHHCCTTCEEECCSSHHHHHHHHTCTTC
T ss_pred hHHHHHHHHHHHhcCCCCEEeecCcHHHHHHHHHHhhc
Confidence 55788999999999999999999999999999999765
No 53
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=91.42 E-value=0.19 Score=44.11 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHh----cCcCCCEEEEC-CChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVE----FVESGMVLGLG-TGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~----lI~dg~~I~Lg-sGST~~~la~~L~~~ 69 (260)
..++.+++.|++ +|+++++|+|+ +|+|...++++|...
T Consensus 38 ~~~~~l~~~aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~ 80 (264)
T 2r5f_A 38 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQ 80 (264)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECcchHHHHHHHHhhccc
Confidence 346778887776 56899999999 999999999999653
No 54
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=90.06 E-value=0.55 Score=44.78 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
+..++||+.++++|+||.++=+|.|+....++.+|.++ +++.+-|
T Consensus 219 ~~~~~Ia~~va~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~t 263 (455)
T 3qli_A 219 PEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHT 263 (455)
T ss_dssp THHHHHHHHHHHTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBC
T ss_pred hHHHHHHHHHHHHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEc
Confidence 44678999999999999999999999999999999864 2666655
No 55
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=87.43 E-value=0.073 Score=48.74 Aligned_cols=47 Identities=9% Similarity=-0.151 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH-HHHH
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-HEQA 91 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~-a~~l 91 (260)
++|++||++|++ +++ |.|||+.++++.|++.. ++++|||+... +..+
T Consensus 100 ~eK~~Ia~~aa~---~~~----d~gtt~~~~a~~Ls~~~------~~tvv~~~~~~~~~~L 147 (338)
T 1stz_A 100 EADLAVETFKSM---PLA----DPEKVLFLAGNLLARLT------EGYVLIERPNTRDLKI 147 (338)
T ss_dssp CCCHHHHTCCCT---TBC----CHHHHHHHHHHHHHHHH------TCEEEEECCCGGGCBC
T ss_pred HHHHHHHHHHhh---cCC----CHHHHHHHHHHHHhccC------CeEEEEeCCHHHHHHh
Confidence 569999988875 666 99999999999998652 68988888753 4444
No 56
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=85.97 E-value=1 Score=42.79 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+..++||+.++++|+||+++=+|.|+....++.+|.+.
T Consensus 193 ~~~~~IA~~~a~~i~dG~~lqlGIG~ip~aV~~~L~~~ 230 (448)
T 3gk7_A 193 EVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDK 230 (448)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEBCSSHHHHHHHHTCTTC
T ss_pred cHHHHHHHHHHHHccCCCEEEeccCcHHHHHHHHhhhc
Confidence 56788999999999999999999999999999988753
No 57
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=85.34 E-value=1.3 Score=41.81 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+..++||+.|+++|+||.++=+|.|+....++..|.+.
T Consensus 197 ~~~~~Ia~~~a~~i~dG~~lq~GiG~ip~AV~~~L~~~ 234 (434)
T 3eh7_A 197 EVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDK 234 (434)
T ss_dssp HHHHHHHHHHHHTCCTTCEEECCSSHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHhccCCCEEEeccchHHHHHHHHhhhc
Confidence 55788999999999999999999999999999988753
No 58
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=81.06 E-value=2.3 Score=31.78 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=49.7
Q ss_pred cccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEe-CCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc
Q 024953 163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVT-DNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL 241 (260)
Q Consensus 163 ~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vT-d~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~ 241 (260)
.+-|.+.|.....|.+.|.++ .|+ ++ ..++ +.|.+|+=+--.. ..+..+.-+.++.+|||..+.|-.
T Consensus 9 slvV~~~p~~~~~V~~~L~~i---pgv--Ei------~~~~~~~GkiVV~iEa~~-~~~l~~~i~~I~~i~GVlst~lvy 76 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLNAF---PGC--EV------AVSDAPSGQLIVVVEAED-SETLIQTIESVRNVEGVLAVSLVY 76 (95)
T ss_dssp EEEEEECTTSHHHHHHHHTTS---TTE--EE------EEEETTTTEEEEEEEESS-HHHHHHHHHHHTTSTTEEEEEESS
T ss_pred EEEEEECCCCHHHHHHHHHCC---CCe--EE------EEecCCCCCEEEEEEeCC-HHHHHHHHHHHhcCCCccEEeEEE
Confidence 356777899999999999997 354 32 2233 3677777554332 445556668899999999999987
Q ss_pred cccc
Q 024953 242 DMAT 245 (260)
Q Consensus 242 ~~~~ 245 (260)
...+
T Consensus 77 ~~~e 80 (95)
T 2jsx_A 77 HQQE 80 (95)
T ss_dssp CCCC
T ss_pred EEec
Confidence 6543
No 59
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=78.13 E-value=2.2 Score=30.10 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=41.0
Q ss_pred EEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHH-HhcCCCcEEee
Q 024953 166 VEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASD-NILRLAGVVEH 237 (260)
Q Consensus 166 vEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~-~l~~i~GVve~ 237 (260)
|.+.|-....+.+.|.++ ++++. -..+|-..+|++-+.+.. ..+++++-. .|..+|||..+
T Consensus 8 v~~~~~~~~~~~~~l~~~-------peV~e---~~~vtG~~D~ll~v~~~d-~~~l~~~i~~~l~~~~gV~~~ 69 (83)
T 2cvi_A 8 MVTAAGKEREVMEKLLAM-------PEVKE---AYVVYGEYDLIVKVETDT-LKDLDQFITEKIRKMPEIQMT 69 (83)
T ss_dssp EEECTTCHHHHHHHHHTS-------TTEEE---EEECBSSCSEEEEEEESS-HHHHHHHHHTTGGGCTTEEEE
T ss_pred EEEcCCCHHHHHHHHhCC-------CCeeE---EEEEcccCCEEEEEEECC-HHHHHHHHHHHhccCCCEeEE
Confidence 445566677787778775 34443 234555679999998764 555655554 67789999775
No 60
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=72.01 E-value=3.8 Score=28.47 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=39.6
Q ss_pred EEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHH-HHhcCCCcEEeec
Q 024953 166 VEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVAS-DNILRLAGVVEHG 238 (260)
Q Consensus 166 vEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~-~~l~~i~GVve~G 238 (260)
|.+.|-....+.+.|.++ ++++. -..+|-..++++-+.+.. ..+.+++- +.|..+|||..+-
T Consensus 8 v~~~~~~~~~~~~~l~~~-------peV~~---~~~vtG~~d~l~~v~~~d-~~~l~~~~~~~l~~~~gV~~~~ 70 (83)
T 2zbc_A 8 INTDAGGEDEVFERLKSM-------SEVTE---VHVVYGVYDIVVKVEADS-MDKLKDFVTNTIRKLPKVRSTL 70 (83)
T ss_dssp EEESTTCHHHHHHHHTTC-------TTEEE---EEECSSSCSEEEEEECSS-HHHHHHHHHHTGGGSTTEEEEE
T ss_pred EEEcCCCHHHHHHHHhCC-------CCeEE---EEEEeccCCEEEEEEECC-HHHHHHHHHHHhcCCCCEeEEE
Confidence 455666667777777664 34442 134454668999999764 55555544 3777899997653
No 61
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=71.34 E-value=24 Score=26.78 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=40.3
Q ss_pred CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEc
Q 024953 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l 101 (260)
+.++.+|.|..-..+++.|.+. + .+++++..+......+...|+.++.-
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~----g-~~v~vid~~~~~~~~~~~~g~~~i~g 56 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS----D-IPLVVIETSRTRVDELRERGVRAVLG 56 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT----T-CCEEEEESCHHHHHHHHHTTCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHC----C-CCEEEEECCHHHHHHHHHcCCCEEEC
Confidence 5689999999999999999754 1 27999999998888888888876643
No 62
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=68.84 E-value=6.4 Score=33.13 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=30.2
Q ss_pred HHHHHHHHh----cCcC-CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 35 KIAAYKAVE----FVES-GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 35 ~~IA~~Aa~----lI~d-g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
+.+++.|++ .+++ +++|+|.+|+|...+.++|... .-..++++++.
T Consensus 11 ~~l~~~aA~~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~~--~~~~~~v~v~~ 61 (234)
T 2ri0_A 11 TEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRES--HLDFSDMVSIN 61 (234)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCSSTTHHHHHHHHTS--CCCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHHHhc--CCChhheEEEe
Confidence 345555544 4453 5799999999999999999742 01123566654
No 63
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=66.84 E-value=15 Score=35.19 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=38.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHh----------cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953 19 PLSSPPPVILTQDELKKIAAYKAVE----------FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP 82 (260)
Q Consensus 19 ~~~~~~~~m~~~~~~K~~IA~~Aa~----------lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT 82 (260)
|++..|....+ +.-++||+.+++ +++||.++=+|.|.....++..|.++. .+++.+-|
T Consensus 226 p~~~~~~~~~~--~~~~~Ia~~ia~~i~~e~~ag~l~~dG~~lQ~GiG~ip~AV~~~L~~~~----~~~l~~~t 293 (514)
T 4eu9_A 226 RDENAPFAAPD--ETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGP----FENLVGYS 293 (514)
T ss_dssp CCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHTTSSCTTCCCEECCCSHHHHHHHHHHHHSS----CCSEEEES
T ss_pred CccccCCCCCC--hhhhhHHHHHHHHHHHHHhhccccCCCceeccCCCchHHHHHHHHhhcC----CcCceEee
Confidence 44444443333 233456655554 789999999999999999999998641 23566555
No 64
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.81 E-value=12 Score=30.21 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=53.1
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEecC--------cHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeC
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPY--------CWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYL 214 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p~--------~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f 214 (260)
++....|..|++.. . .-+-+.+.|. .+..+.+.+.++ ++++. -++|-..|+++-+.+
T Consensus 63 ~~~~~~d~~~lG~~-~---a~v~v~~~~~~~~~f~~~~~~~~~~~l~~~-------peV~~----~~vtG~~dll~~v~~ 127 (171)
T 2ia0_A 63 RYTIILGEQLKPKH-L---ALIVLEVGKPVIEDFLERYISYISSTLSAL-------PGVLF----VAKSGEDKIIALVGK 127 (171)
T ss_dssp EEEEEECTTTSCSE-E---EEEEEEESCC--CHHHHHHHHHHHHHHHTS-------TTEEE----EEEETTTEEEEEEEE
T ss_pred eecccCCHHHhhcc-e---EEEEEEECCccccccchhHHHHHHHHHHCC-------CCeEE----EEEcCCCCEEEEEEE
Confidence 45567788887422 1 2234455555 556666666664 34442 226777899999988
Q ss_pred CCCCCCHHHHH-HHhcCCCcEEeec
Q 024953 215 KKDIGDLKVAS-DNILRLAGVVEHG 238 (260)
Q Consensus 215 ~~~~~~~~~l~-~~l~~i~GVve~G 238 (260)
.. ..+..++- +.|..+|||..+-
T Consensus 128 ~d-~~~l~~~l~~~l~~~~gV~~~~ 151 (171)
T 2ia0_A 128 NN-KDELVKFIEENITSIPNLKHIQ 151 (171)
T ss_dssp SS-TTHHHHHHHHHTTTSTTEEEEE
T ss_pred CC-HHHHHHHHHHHhhcCCCeeEEE
Confidence 75 77888877 7899999998876
No 65
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=66.62 E-value=6.9 Score=33.68 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCEEEECCChhHHHHHHHHHhHHhcC--CCCCEEEE
Q 024953 48 GMVLGLGTGSTAKHAVDRIGELLRQG--KLTNIVGI 81 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~~~~~~--~l~~itvV 81 (260)
+.+|+|.+|||...+.+.|.+..+.+ ..++++++
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~ 69 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTF 69 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEE
T ss_pred ceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEE
Confidence 78999999999999999997532111 12367666
No 66
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.06 E-value=3.2 Score=32.56 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=52.1
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHH
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 222 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~ 222 (260)
++....|..|++.... .-+-+.+.|.....+.+.|.++ ++++.. ..+|-..|+++-+.+.. ..+.+
T Consensus 53 ~~~~~~d~~~~G~~~~---a~v~v~~~~~~~~~~~~~l~~~-------p~V~~~---~~~tG~~d~~~~v~~~d-~~~l~ 118 (151)
T 2cyy_A 53 KFTAIIDPEALGYSML---AFILVKVKAGKYSEVASNLAKY-------PEIVEV---YETTGDYDMVVKIRTKN-SEELN 118 (151)
T ss_dssp CCCCCCCGGGGTCCEE---EEEEEEECTTCHHHHHHHHHTC-------TTEEEE---EECSSSSSEEEEEEESS-HHHHH
T ss_pred EEEEEECHHHCCccEE---EEEEEEECcccHHHHHHHHhcC-------CCeeEe---eEecCCCCEEEEEEECC-HHHHH
Confidence 3344567777643221 1233455677888888888875 233321 22344569999998764 56666
Q ss_pred HHHHHhcCCCcEEeeccc
Q 024953 223 VASDNILRLAGVVEHGMF 240 (260)
Q Consensus 223 ~l~~~l~~i~GVve~GlF 240 (260)
++-+.|..+|||..+--+
T Consensus 119 ~~~~~l~~~~gV~~~~t~ 136 (151)
T 2cyy_A 119 NFLDLIGSIPGVEGTHTM 136 (151)
T ss_dssp HHHHHHHTSTTEEEEEEE
T ss_pred HHHHHHhCCCCEeEEEEE
Confidence 666788899999765433
No 67
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=64.54 E-value=11 Score=29.41 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=50.1
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEecC-cHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCH
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPY-CWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDL 221 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p~-~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~ 221 (260)
++....|..|++.... .-+-+.+.|- .+..+.+.+.++ ++++. -..+|-+-|+++-+.+.. ..+.
T Consensus 54 ~~~~~~~~~~~g~~~~---a~v~v~~~~~~~~~~~~~~l~~~-------peV~~---~~~vtG~~d~~~~v~~~d-~~~l 119 (152)
T 2cg4_A 54 GARIDVSPKQLGYDVG---CFIGIILKSAKDYPSALAKLESL-------DEVTE---AYYTTGHYSIFIKVMCRS-IDAL 119 (152)
T ss_dssp EEEEEECTTTTTCCEE---EEEEEEESSGGGHHHHHHHHHTC-------TTEEE---EEEESSSCSEEEEEEESC-HHHH
T ss_pred eEEEecCHHHcCCeEE---EEEEEEECCCCCHHHHHHHHhCC-------cCeEE---EEEEecccCEEEEEEECC-HHHH
Confidence 4556778888743221 1233344443 467777777775 33332 134455669999998764 5555
Q ss_pred HHHH-HHhcCCCcEEeeccc
Q 024953 222 KVAS-DNILRLAGVVEHGMF 240 (260)
Q Consensus 222 ~~l~-~~l~~i~GVve~GlF 240 (260)
.++- +.|..+|||..+--+
T Consensus 120 ~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 120 QHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp HHHHHHTTTTSTTEEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEEE
Confidence 5544 567789999776543
No 68
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=59.88 E-value=13 Score=32.59 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.0
Q ss_pred CEEEECCChhHHHHHHHHHhH
Q 024953 49 MVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 49 ~~I~LgsGST~~~la~~L~~~ 69 (260)
.+|+|.+|||...+.+.|.+.
T Consensus 35 ~~lglsgGsTp~~~~~~L~~~ 55 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIEY 55 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHHhh
Confidence 689999999999999999753
No 69
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=59.19 E-value=6.7 Score=28.01 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=40.6
Q ss_pred EEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHH-HHhcCCCcEEeec
Q 024953 166 VEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVAS-DNILRLAGVVEHG 238 (260)
Q Consensus 166 vEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~-~~l~~i~GVve~G 238 (260)
|.+.|-....+.+.|.++ ++++. -..+|-.-++++-+.+.. ..+.+++- +.|..+|||..+-
T Consensus 8 v~~~~~~~~~~~~~l~~~-------peV~~---~~~vtG~~D~ll~v~~~d-~~~l~~~l~~~l~~~~gV~~~~ 70 (92)
T 2djw_A 8 IRPRGNRVQALGEAIAEL-------PQVAE---VYSVTGPYDLVALVRLKD-VEELDDVVTQGILSLEGVERTE 70 (92)
T ss_dssp EEECGGGHHHHHHHHTTS-------TTEEE---EEEESSSSSEEEEEEESS-GGGHHHHCCCCCTTSTTEEEEE
T ss_pred EEEcCCCHHHHHHHHhcC-------CCeEE---EEEeecCCCEEEEEEECC-HHHHHHHHHHhcccCCCEeEEE
Confidence 445565666776666664 33432 245566779999999764 66666654 5677899996653
No 70
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=58.75 E-value=12 Score=35.71 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhc----CcCC------CEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECC
Q 024953 32 ELKKIAAYKAVEF----VESG------MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (260)
Q Consensus 32 ~~K~~IA~~Aa~l----I~dg------~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTn 83 (260)
+.+++||+.|+++ |++| +++=+|.|+....++..|.+. +++++.+-|-
T Consensus 231 ~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~----~~~~l~~~se 288 (497)
T 2g39_A 231 GETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES----PFENLTMYSE 288 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS----SCCSEEEECS
T ss_pred hHHHHHHHHHHHHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc----ccccceEEee
Confidence 5578899999985 5677 999999999999999999753 2335665554
No 71
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.56 E-value=3.7 Score=33.30 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=51.2
Q ss_pred EEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHH
Q 024953 144 FVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKV 223 (260)
Q Consensus 144 ~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~ 223 (260)
+....|..|++.... .-+-+.+.|.....+.+.|.++ ++++.. ..+|-..|+++-+.+.. ..+.++
T Consensus 74 ~~a~vd~~~~G~~~~---a~v~v~~~~~~~~~v~~~l~~~-------peV~~~---~~vtG~~d~l~~v~~~d-~~~l~~ 139 (171)
T 2e1c_A 74 FTAIIDPEALGYSML---AFILVKVKAGKYSEVASNLAKY-------PEIVEV---YETTGDYDMVVKIRTKN-SEELNN 139 (171)
T ss_dssp CCCCCCGGGGTCCEE---EEEEEEECTTCHHHHHHHHHTS-------TTEEEE---EECSSSSSEEEEEEESS-HHHHHH
T ss_pred eeEEECHHHcCCCEE---EEEEEEECcchHHHHHHHHhcC-------cCeEEE---EEeeCCCCEEEEEEECC-HHHHHH
Confidence 334567777643221 1234455688888888888885 233321 22344669999998764 556666
Q ss_pred HHHHhcCCCcEEeecc
Q 024953 224 ASDNILRLAGVVEHGM 239 (260)
Q Consensus 224 l~~~l~~i~GVve~Gl 239 (260)
+-+.|..+|||..+--
T Consensus 140 ~l~~l~~~~gV~~~~t 155 (171)
T 2e1c_A 140 FLDLIGSIPGVEGTHT 155 (171)
T ss_dssp HHHHHHHSTTEEEEEE
T ss_pred HHHHHhcCCCcceEEE
Confidence 6677889999976543
No 72
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.51 E-value=5.8 Score=30.89 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=47.7
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeC-CCCCCCH
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYL-KKDIGDL 221 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f-~~~~~~~ 221 (260)
++....|..|++.... .-+=+.+.|-....+.+.+.++ ++++. -..+|-+-|+++-+.+ .. ..+.
T Consensus 55 ~~~~~~~~~~~g~~~~---a~v~v~~~~~~~~~~~~~l~~~-------peV~~---~~~vtG~~d~~~~v~~~~d-~~~l 120 (151)
T 2dbb_A 55 KFTIIPDIDKLGYMYA---IVLIKSKVPSDADKVISEISDI-------EYVKS---VEKGVGRYNIIVRLLLPKD-IKDA 120 (151)
T ss_dssp EEEEEECTGGGTEEEE---EEEEEESSHHHHHHHHHHHTTC-------TTEEE---EEEEESSCSEEEEEEEESS-HHHH
T ss_pred EEEecCChHHhCCCEE---EEEEEEeCCCCHHHHHHHHHcC-------CCeEE---EeEecCCCCEEEEEEEcCC-HHHH
Confidence 4555678888742211 1233333454445555555443 33332 1345556799999997 64 5566
Q ss_pred HHHH-HHhcCCCcEEeecc
Q 024953 222 KVAS-DNILRLAGVVEHGM 239 (260)
Q Consensus 222 ~~l~-~~l~~i~GVve~Gl 239 (260)
+++- +.|..+|||..+--
T Consensus 121 ~~~~~~~l~~~~gV~~~~t 139 (151)
T 2dbb_A 121 ENLISEFLQRIKNAENVEV 139 (151)
T ss_dssp HHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEE
Confidence 6655 67889999976543
No 73
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=58.14 E-value=24 Score=27.81 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCc----CCCEEEE---CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcC
Q 024953 32 ELKKIAAYKAVEFVE----SGMVLGL---GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLD 102 (260)
Q Consensus 32 ~~K~~IA~~Aa~lI~----dg~~I~L---gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~ 102 (260)
+.|+..|+.+++.++ .+++-+. ..++.+-..+..++... +.++|||.......+...|++++.++
T Consensus 52 ~~~r~rGr~gL~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~------~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 52 PLRRAKGRRGLETLERLREAAPLEVLETTPKGESVDEKLLFLARDL------EAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHT------TCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHh------CCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 457777888887553 1224444 45567777777787652 67999999999999999999998764
No 74
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=55.12 E-value=8.6 Score=32.44 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHh----cCc--CCCEEEECCChhHHHHHHHHHh
Q 024953 35 KIAAYKAVE----FVE--SGMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 35 ~~IA~~Aa~----lI~--dg~~I~LgsGST~~~la~~L~~ 68 (260)
+.+++.|++ .++ ++++|+|.+|||...+.+.|.+
T Consensus 10 ~~l~~~aA~~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~ 49 (242)
T 2bkx_A 10 EELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIR 49 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHHH
Confidence 334444444 444 4689999999999999999974
No 75
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=54.83 E-value=18 Score=34.66 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhc----CcCC------CEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECC
Q 024953 32 ELKKIAAYKAVEF----VESG------MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (260)
Q Consensus 32 ~~K~~IA~~Aa~l----I~dg------~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTn 83 (260)
+.+++||+.|+++ |++| +++=+|.|+....++..|.+.. .++++.+-|-
T Consensus 226 ~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~~---~~~~l~i~te 284 (506)
T 2nvv_A 226 PVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNP---DIPAFNMYTE 284 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHCT---TSCCEEEECS
T ss_pred hHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhcC---CcccceEEec
Confidence 5578899999985 4456 9999999999999999998641 0235555443
No 76
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.37 E-value=16 Score=28.71 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=46.7
Q ss_pred EEEEEeCCCcccCCCCCCccccEEEecCc--HHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCH
Q 024953 144 FVVIVDESKLVPHLGGSGLAMPVEVVPYC--WKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDL 221 (260)
Q Consensus 144 ~IlLaD~sKf~~~lg~~~~~lPvEV~p~~--~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~ 221 (260)
+....|..|++.... .-+-+.+.|.. ...+.+.+.++ ++++. -..+|-..||++-+.+.. ..+.
T Consensus 57 ~~~~~d~~~~g~~~~---a~v~v~~~~~~~~~~~~~~~l~~~-------peV~~---~~~vtG~~d~~~~v~~~d-~~~l 122 (162)
T 2p5v_A 57 YAALLSPESVNLGLQ---AFIRVSIRKAKDAREDFAASVRKW-------PEVLS---CFALTGETDYLLQAFFTD-MNAF 122 (162)
T ss_dssp EEEEECTGGGTCCEE---EEEEEEECSSTTHHHHHHHHHTTC-------TTEEE---EEEESSSCSEEEEEEESS-HHHH
T ss_pred ecccCChHHhcccEE---EEEEEEEcCCchHHHHHHHHHhcC-------hhhhE---eeeecCCCCEEEEEEECC-HHHH
Confidence 445667777632211 11234445655 66666666554 23332 123555679999998764 5555
Q ss_pred HHHH-HHhcCCCcEEeec
Q 024953 222 KVAS-DNILRLAGVVEHG 238 (260)
Q Consensus 222 ~~l~-~~l~~i~GVve~G 238 (260)
.++- +.|..+|||..+-
T Consensus 123 ~~~l~~~l~~~~gV~~~~ 140 (162)
T 2p5v_A 123 SHFVLDTLLSHHGVQDAQ 140 (162)
T ss_dssp HHHHHHTTTTSTTEEEEE
T ss_pred HHHHHHHhhcCCCeeEEE
Confidence 5544 5678999997654
No 77
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=51.04 E-value=73 Score=23.62 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=37.9
Q ss_pred CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
..++.+|.|..-..+++.|.+. +. +++++..+......+...+..++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~----g~-~V~~id~~~~~~~~~~~~~~~~~~ 54 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA----GK-KVLAVDKSKEKIELLEDEGFDAVI 54 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT----TC-CEEEEESCHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CC-eEEEEECCHHHHHHHHHCCCcEEE
Confidence 3588899999999999999754 22 699999998887777777776554
No 78
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=49.51 E-value=6.6 Score=28.87 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEe
Q 024953 174 KFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVE 236 (260)
Q Consensus 174 ~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve 236 (260)
..+..++.+++.++|.-..-||+ -|+...+=+.| =+....+-+...+|..+|.+||||--
T Consensus 18 ~~~a~kvn~iL~~yg~~I~gRmG--iP~~~~~~~iI-sl~v~~~~d~I~aL~gkLg~i~GV~v 77 (86)
T 2nzc_A 18 EKAYRQVNELLHNFSEDILLRVG--YPVREENMAII-FLVLKTDNDTIGALSGKLGQISGVRV 77 (86)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEE--EEEGGGTEEEE-EEEEEECHHHHHHHHHHHHTSTTEEE
T ss_pred hhhHHHHHHHHHhccCEEEEEcC--CCcCcCCceEE-EEEEECCHHHHHHHHHHhCCCCCEEE
Confidence 33444455555556888888983 35654333333 34443334457889999999999964
No 79
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=46.71 E-value=58 Score=25.49 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=39.1
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
....++.+|.|..-..+++.|.+.. + .+++++..+......+...|..++.
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~--g--~~V~vid~~~~~~~~~~~~g~~~~~ 88 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARY--G--KISLGIEIREEAAQQHRSEGRNVIS 88 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHH--C--SCEEEEESCHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcc--C--CeEEEEECCHHHHHHHHHCCCCEEE
Confidence 3456888999999999999997530 1 2699999998877777777877653
No 80
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=45.83 E-value=22 Score=30.09 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCcC--CCEEEECCChhHHHHHHHHHh
Q 024953 35 KIAAYKAVEFVES--GMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 35 ~~IA~~Aa~lI~d--g~~I~LgsGST~~~la~~L~~ 68 (260)
+++|+..++.+++ ..+|+|.+|||...+.+.|.+
T Consensus 15 ~~aA~~i~~~i~~~~~~~l~lsgGstp~~~~~~L~~ 50 (238)
T 1y89_A 15 KSLADDMLAYSQQGQPVHISLSGGSTPKMLFKLLAS 50 (238)
T ss_dssp HHHHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHh
Confidence 3344444445555 679999999999999999964
No 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=44.78 E-value=48 Score=30.53 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCC---ChHHHHHHHHHHHHhcCcCCC-EEEE----CCChhHHH--HHHHHHhHHhcCCCCCEEEECCcHH
Q 024953 17 LSPLSSPPPVIL---TQDELKKIAAYKAVEFVESGM-VLGL----GTGSTAKH--AVDRIGELLRQGKLTNIVGIPTSKK 86 (260)
Q Consensus 17 ~~~~~~~~~~m~---~~~~~K~~IA~~Aa~lI~dg~-~I~L----gsGST~~~--la~~L~~~~~~~~l~~itvVTnSl~ 86 (260)
-||..++..+|. -..+++++ .......+..++ .+.| |||-|... ++++|... +. ..+.++|.+-.
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~a-v~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~---~~-~~il~~a~T~~ 85 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNA-FNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST---GE-TGIILAAPTHA 85 (459)
T ss_dssp ----------CCSSCCCHHHHHH-HHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT---TC-CCEEEEESSHH
T ss_pred cCCCccccCCCccccCCHHHHHH-HHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC-ceEEEecCcHH
Confidence 356666655553 23344444 344555665555 4444 88888643 33333321 21 25888888887
Q ss_pred HHHHHH
Q 024953 87 THEQAV 92 (260)
Q Consensus 87 ~a~~l~ 92 (260)
.+..+.
T Consensus 86 Aa~~l~ 91 (459)
T 3upu_A 86 AKKILS 91 (459)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 82
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=44.56 E-value=22 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHH-HHhcCCCcEEeec
Q 024953 167 EVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVAS-DNILRLAGVVEHG 238 (260)
Q Consensus 167 EV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~-~~l~~i~GVve~G 238 (260)
.+.|.....+.+.+.++ ++++.. ..+|-..|+++-+.+.. ..+.+++- +.|..+|||..+-
T Consensus 71 ~~~~~~~~~~~~~l~~~-------~~v~~~---~~~~G~~d~~~~v~~~d-~~~l~~~~~~~l~~~~gV~~~~ 132 (141)
T 1i1g_A 71 DTKPEKLFEVAEKLKEY-------DFVKEL---YLSSGDHMIMAVIWAKD-GEDLAEIISNKIGKIEGVTKVC 132 (141)
T ss_dssp EECGGGHHHHHHHHHHS-------TTEEEE---CCCSSSSSEEEEEEESS-HHHHHHHHHHTTTTSTTEEEEE
T ss_pred EECchhHHHHHHHHhcC-------CCeEEE---EEecCCCCEEEEEEECC-HHHHHHHHHHHhhcCCCEeEEE
Confidence 44566778888888885 233321 22344568999888754 45555555 6678899997654
No 83
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=40.77 E-value=1e+02 Score=28.33 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=40.3
Q ss_pred CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEE
Q 024953 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~ 100 (260)
+.+|.+|.|..-..+++.|... + .++++|..+......++..|.+++.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~----g-~~vvvId~d~~~v~~~~~~g~~vi~ 52 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS----G-VKMVVLDHDPDHIETLRKFGMKVFY 52 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT----T-CCEEEEECCHHHHHHHHHTTCCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHC----C-CCEEEEECCHHHHHHHHhCCCeEEE
Confidence 4589999999999999999754 2 2799999999988888888887764
No 84
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=39.28 E-value=24 Score=30.15 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCcCCCEEE-ECCC--hhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH
Q 024953 34 KKIAAYKAVEFVESGMVLG-LGTG--STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~-LgsG--ST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~ 92 (260)
-+.|+..|..++++|+.|. ||+| ..+..+++.+... +. .++.|-.|......++
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~----~~-~v~gvD~s~~ml~~A~ 113 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHD----NC-KIIAIDNSPAMIERCR 113 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSS----SC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCC----CC-EEEEEECCHHHHHHHH
Confidence 4567888888999998654 6655 4555555544321 11 5888999987665554
No 85
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=38.56 E-value=8.2 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHH-hcCcCCCEEEECCChhHHHH
Q 024953 35 KIAAYKAV-EFVESGMVLGLGTGSTAKHA 62 (260)
Q Consensus 35 ~~IA~~Aa-~lI~dg~~I~LgsGST~~~l 62 (260)
.+-+++++ +||.+|-..|..||||+++-
T Consensus 36 ~r~vKK~~~~LV~Eg~leywSSGSTTmyg 64 (78)
T 1ucr_A 36 QREVKKILTALVNDEVLEYWSSGSTTMYG 64 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCceEEEecCCeEEEe
Confidence 33344444 59999999999999987653
No 86
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=36.55 E-value=37 Score=23.12 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=35.4
Q ss_pred ccccEEEecCcHHHHHHHHHHhhhhCCCceE-EeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeec
Q 024953 162 LAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK-LRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHG 238 (260)
Q Consensus 162 ~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~-~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~G 238 (260)
|+.-++|.-....-+...+.+.+.+.|+... ++....+ +.....+.+.... ..+++++-++|++++||.+.-
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~----~~~~~~i~v~~~~-~~~l~~l~~~L~~~~~V~~v~ 76 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD----GIFTCNLMIFVKN-TDKLTTLMDKLRKVQGVFTVE 76 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS----SEEEEEEEEEESS-HHHHHHHHHHHTTCTTEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC----CEEEEEEEEEECC-HHHHHHHHHHHhcCCCceEEE
Confidence 3344444433333344455555555576542 3321111 0011223333222 345678888999999998753
No 87
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=35.61 E-value=16 Score=28.22 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=37.3
Q ss_pred cCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHH-HHhcCCCcEEeecc
Q 024953 170 PYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVAS-DNILRLAGVVEHGM 239 (260)
Q Consensus 170 p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~-~~l~~i~GVve~Gl 239 (260)
+.....+.+.+.++ +++... ..+|-..|+++-+...+ ..+..++- +.|..+|||..+--
T Consensus 75 ~~~~~~~~~~l~~~-------p~V~~~---~~~tG~~d~~~~v~~~d-~~~l~~~l~~~l~~~~gV~~~~t 134 (150)
T 2pn6_A 75 KNYHVELGNKLAQI-------PGVWGV---YFVLGDNDFIVMARYKT-REEFMEKFLERVMSIPEVERTST 134 (150)
T ss_dssp TTHHHHHHHHHHTS-------TTEEEE---EECSSSCSEEEEEEESS-HHHHHHHTHHHHTTCTTEEEEEE
T ss_pred hhHHHHHHHHHhcC-------chhhhh---hhhcCcCCEEEEEEECC-HHHHHHHHHHHhccCCCeeEEEE
Confidence 45667777777775 223211 23444679999998764 55555554 67789999976543
No 88
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=34.64 E-value=41 Score=28.17 Aligned_cols=53 Identities=13% Similarity=-0.020 Sum_probs=41.1
Q ss_pred CCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEc
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l 101 (260)
+-|.|.+-|++|+..|.+.+.+... .+.++.+++-+..++..+.+.|++....
T Consensus 185 ~~d~v~ftS~s~v~~~~~~~~~~~~--~l~~~~~~aIG~~Ta~~l~~~G~~~~~~ 237 (254)
T 4es6_A 185 RLNGLVVSSGQGLQNLYQLAAADWP--EIGRLPLFVPSPRVAEMARELGAQRVID 237 (254)
T ss_dssp TCCEEECCSHHHHHHHHHHHGGGHH--HHTTSCEEESSHHHHHHHHHTTCSSEEE
T ss_pred CCCEEEEcCHHHHHHHHHHhhHHHH--HHhCCeEEEECHHHHHHHHHcCCCceEE
Confidence 4589999999999999998864210 0125788999999999999999876544
No 89
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=31.84 E-value=35 Score=29.07 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=30.7
Q ss_pred cCcCCCEEE-E--CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH
Q 024953 44 FVESGMVLG-L--GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92 (260)
Q Consensus 44 lI~dg~~I~-L--gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~ 92 (260)
.|++|++|. | |+|+|+.++++..+.. | .+..|-.|......+.
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~---G---~V~avD~s~~~~~~l~ 119 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPR---G---RIYGVEFAPRVMRDLL 119 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTT---C---EEEEEECCHHHHHHHH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCC---c---eEEEEeCCHHHHHHHH
Confidence 379999753 4 5667999999988643 2 4788888887665553
No 90
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=31.06 E-value=12 Score=29.00 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred cEEEEEeCCCcccCCCCCCccccEE-EecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCH
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVE-VVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDL 221 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvE-V~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~ 221 (260)
++....|..|.+.... .-+-+. +.|.....+.+.+.++ ++++. -..+|-..|+++-+.+.+ ..+.
T Consensus 53 ~~~~~~d~~~~g~~~~---a~v~~~~~~~~~~~~~~~~l~~~-------p~V~~---~~~~~G~~d~~~~v~~~~-~~~l 118 (150)
T 2w25_A 53 GYSARINPEAVGHLLS---AFVAITPLDPSQPDDAPARLEHI-------EEVES---CYSVAGEASYVLLVRVAS-ARAL 118 (150)
T ss_dssp EEEEEECTGGGTCCEE---EEEEEEESCTTSCCCHHHHHTTC-------TTEEE---EEEESSSCSEEEEEEESS-HHHH
T ss_pred EEEeccChhHcccceE---EEEEEEEcCCCCHHHHHHHHhcC-------cCeEE---EEEeECCCCEEEEEEECC-HHHH
Confidence 3344567776632111 112222 3355555566666554 22331 123455678999998764 6667
Q ss_pred HHHHHHhcCCCcEEee
Q 024953 222 KVASDNILRLAGVVEH 237 (260)
Q Consensus 222 ~~l~~~l~~i~GVve~ 237 (260)
.++-+.|..++||+.+
T Consensus 119 ~~~l~~l~~~~gv~~~ 134 (150)
T 2w25_A 119 EDLLQRIRTTANVRTR 134 (150)
T ss_dssp HHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhhcCCcceE
Confidence 7777778889999874
No 91
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=30.04 E-value=58 Score=27.86 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=40.3
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEE
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~ 99 (260)
.+-|.|.+-|++|+..|.+.+.+... ..+.++.+++-+..++..+.+.|++..
T Consensus 209 ~~~d~v~ftS~~~v~~f~~~~~~~~~-~~l~~~~i~aIG~~Ta~~l~~~G~~~~ 261 (286)
T 1jr2_A 209 GVPASITFFSPSGLTYSLKHIQELSG-DNIDQIKFAAIGPTTARALAAQGLPVS 261 (286)
T ss_dssp CSCSEEEESSHHHHHHHHHHHHHHHG-GGGGGSEEEESSHHHHHHHHHTTCCCS
T ss_pred CCCCEEEEEChHHHHHHHHHHhhhcc-ccccCCEEEEECHHHHHHHHHcCCCce
Confidence 34589999999999999998864110 012367899999999999999997643
No 92
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=30.02 E-value=25 Score=29.84 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.1
Q ss_pred CCEEEECCChhHHHHHHHHHh
Q 024953 48 GMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~ 68 (260)
..+|+|.+|||...+.+.|.+
T Consensus 46 ~~~l~LsgGsTp~~ly~~L~~ 66 (232)
T 1vl1_A 46 KIFVVLAGGRTPLPVYEKLAE 66 (232)
T ss_dssp CEEEEECCSTTHHHHHHHHTT
T ss_pred CeEEEEcCCccHHHHHHHHHH
Confidence 579999999999999999974
No 93
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=29.73 E-value=44 Score=28.83 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.8
Q ss_pred CCEEEECCChhHHHHHHHHHh
Q 024953 48 GMVLGLGTGSTAKHAVDRIGE 68 (260)
Q Consensus 48 g~~I~LgsGST~~~la~~L~~ 68 (260)
..+|+|.+|||...+.+.|.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 569999999999999999875
No 94
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=29.24 E-value=77 Score=24.08 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred cEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHH
Q 024953 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 222 (260)
Q Consensus 143 ~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~ 222 (260)
++....|..|++..+. .-+-+.+.|.....+.+.+.++ ++++. -..+|-+.|+++-+.+. |.+
T Consensus 51 ~~~~~~d~~~~g~~~~---a~v~v~~~~~~~~~~~~~l~~~-------p~V~~---~~~~tG~~d~~~~v~~~----~~~ 113 (144)
T 2cfx_A 51 QYTLEVDQKKLGLPVS---CIVEATVKNADYERFKSYIQTL-------PNIEF---CYRIAGAACYMLKINAE----SLE 113 (144)
T ss_dssp EEEEEECTGGGTCCEE---EEEEEEEGGGCHHHHHHHHHTC-------TTEEE---EEEEESSSSEEEEEEES----SHH
T ss_pred EEecccChhhcCceEE---EEEEEEECcccHHHHHHHHhcC-------hhhhe---eeeeeCCCCEEEEEEEC----CHH
Confidence 3445678877742221 1234455677777777777775 23332 13356567999988864 567
Q ss_pred HHHHHhcCCCcE
Q 024953 223 VASDNILRLAGV 234 (260)
Q Consensus 223 ~l~~~l~~i~GV 234 (260)
++++.+..+++|
T Consensus 114 ~l~~~~~~l~~v 125 (144)
T 2cfx_A 114 AVEDFINKTSPY 125 (144)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhcCc
Confidence 777777667664
No 95
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=29.05 E-value=2.6e+02 Score=24.81 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=38.3
Q ss_pred cCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCC-Cc------------cccE
Q 024953 44 FVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDS-YP------------VVDL 109 (260)
Q Consensus 44 lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~-~~------------~~D~ 109 (260)
-+++|++|.+ |+|..=...++.+... + ...+.++..|..-...+++.|..++.... .. .+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLL---G-AACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCE
Confidence 3678987665 7665444444433322 1 11466666676666677777876554321 11 4778
Q ss_pred EEEccC
Q 024953 110 AIDGAD 115 (260)
Q Consensus 110 af~Gad 115 (260)
+|+.+.
T Consensus 258 vid~~g 263 (398)
T 2dph_A 258 GVDAVG 263 (398)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 777654
No 96
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=28.18 E-value=1.7e+02 Score=24.49 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.5
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHH--HHHHHHhCCCcEE
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK--THEQAVSLGIPLS 99 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~--~a~~l~~~gi~v~ 99 (260)
+..-++.+|+|.....-++.|.+. + .++++|..... ...++...++.++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~---G--A~VtVvap~~~~~l~~l~~~~~i~~i 80 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQE---G--AAITVVAPTVSAEINEWEAKGQLRVK 80 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGG---C--CCEEEECSSCCHHHHHHHHTTSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---C--CEEEEECCCCCHHHHHHHHcCCcEEE
Confidence 556789999999999999999754 2 27999987753 3333444455544
No 97
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.80 E-value=93 Score=27.31 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+...-.|..|+|++...=+-++.+..++-+...+.++|..+
T Consensus 66 ~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 66 SSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp HHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 4678999999999998777788888863333233333322222233567777654
No 98
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=27.47 E-value=1e+02 Score=24.40 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCC
Q 024953 57 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDS 103 (260)
Q Consensus 57 ST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~ 103 (260)
..+-..+..|+... +.+++||.......+...|+++..+..
T Consensus 92 ~~vD~~l~~lA~~~------~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 92 GEIDAMIRKVAKET------NSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp SSHHHHHHHHHHHT------TCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred CcHHHHHHHHHHHh------CCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 45566666677552 679999999999999999999998864
No 99
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=27.32 E-value=55 Score=25.73 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhH
Q 024953 34 KKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGEL 69 (260)
Q Consensus 34 K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~ 69 (260)
++.+.+.+.++.++||+|.+ |+|. ...+++.|.+.
T Consensus 125 ~~eai~~~~~~~~~gDvVLv~Gsg~-~~~~~~~l~~~ 160 (163)
T 3mvn_A 125 VDELVMRIVQQAKPNDHILIMSNGA-FGGIHQKLLTA 160 (163)
T ss_dssp HHHHHHHHHHHCCTTCEEEEECSSC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHHH
Confidence 34566778888899997665 8887 55566666543
No 100
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=27.20 E-value=49 Score=27.41 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=40.3
Q ss_pred CCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEc
Q 024953 47 SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (260)
Q Consensus 47 dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l 101 (260)
+-|.|.+-|++|+..|.+.+.+.... .+.+..+++-+..++..+.+.|++.+..
T Consensus 172 ~~d~v~ftS~s~v~~~~~~~~~~~~~-~l~~~~~~aiG~~ta~~l~~~G~~~~~v 225 (240)
T 3mw8_A 172 GIDTIVVTSGEVLENLINLVPKDSFA-WLRDCHIIVPSARVETQARKKGLRRVTN 225 (240)
T ss_dssp TCCEEECCSHHHHHHHHHHSCGGGHH-HHHHSEEEESSHHHHHHHHHTTCCCEEE
T ss_pred CCCEEEEcCHHHHHHHHHHcchHHHH-HHhCCCEEEECHHHHHHHHHcCCCceEe
Confidence 34899999999999999987532100 0115788899999999999999876544
No 101
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=26.11 E-value=2.3e+02 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=35.4
Q ss_pred EEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hCCCcEEE
Q 024953 50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SLGIPLSD 100 (260)
Q Consensus 50 ~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~gi~v~~ 100 (260)
++.+|.|..-..+++.|.+. + .+++++..+......+. ..+..++.
T Consensus 3 iiIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~l~~~~~~~~i~ 49 (218)
T 3l4b_C 3 VIIIGGETTAYYLARSMLSR---K--YGVVIINKDRELCEEFAKKLKATIIH 49 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHHcCCeEEE
Confidence 67899999999999999754 1 27999999988776654 45666554
No 102
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=24.40 E-value=78 Score=26.18 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=39.5
Q ss_pred cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEE
Q 024953 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (260)
Q Consensus 46 ~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~ 99 (260)
.+-|.|.+-|++|+..+.+.+.- +.++.+++-+..++..+.+.|+++.
T Consensus 160 ~~~d~v~ftS~s~v~~~~~~~~~------~~~~~~~aIG~~Ta~~l~~~G~~v~ 207 (229)
T 3p9z_A 160 KEKSILIFTAISHAKAFLHYFEF------LENYTAISIGNTTALYLQEQGIPSY 207 (229)
T ss_dssp CTTCEEEECSHHHHHHHHHHSCC------CTTCEEEESSHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECHHHHHHHHHHhCc------ccCCEEEEECHHHHHHHHHcCCCce
Confidence 45589999999999999887741 1368899999999999999998754
No 103
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=24.25 E-value=1.1e+02 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCceEEeecCCCceEeCCCCEE---EEeeCCCCCCCHHHHHHHhcCCCcEE
Q 024953 188 GCVAKLRTTGEQPFVTDNGNYV---IDLYLKKDIGDLKVASDNILRLAGVV 235 (260)
Q Consensus 188 g~~~~~R~~~~~p~vTd~GN~I---iD~~f~~~~~~~~~l~~~l~~i~GVv 235 (260)
++.++.|.+ .+|||+ +.+.... -....++-++|..+|||.
T Consensus 64 d~~~~~r~S-------s~GkY~Svtv~v~v~S-~eQv~aiY~~L~~~~~Vk 106 (109)
T 1rwu_A 64 DYTPTVKPS-------SKGNYHSVSITINATH-IEQVETLYEELGKIDIVR 106 (109)
T ss_dssp CCCEEEEES-------SCSSEEEEEEEECCSS-HHHHHHHHHHHSCSSSCE
T ss_pred CCCceecCC-------CCCeEEEEEEEEEECC-HHHHHHHHHHHhcCCCEE
Confidence 456666754 455554 3444332 334566778999999985
No 104
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=22.87 E-value=1.2e+02 Score=26.44 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChh-HHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGST-AKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST-~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.++|+++.+.+++.+.. |..|+|++ +...++ +.+..++-+...+.++|..+
T Consensus 51 ~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~-la~~A~~~Gadavlv~~P~y 102 (293)
T 1w3i_A 51 PEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIR-LAKLSKDFDIVGIASYAPYY 102 (293)
T ss_dssp HHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHH-HHHHGGGSCCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHH-HHHHHHhcCCCEEEEcCCCC
Confidence 46799999999998765 77788873 333333 33332222333566777654
No 105
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.62 E-value=53 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.7
Q ss_pred cCcCCCEEEECCChhHHHHHHHHHhH
Q 024953 44 FVESGMVLGLGTGSTAKHAVDRIGEL 69 (260)
Q Consensus 44 lI~dg~~I~LgsGST~~~la~~L~~~ 69 (260)
+.++|+.+-+-.|+|+..+|+.+...
T Consensus 11 ~tP~G~~~~lp~GaT~~D~A~~Ih~~ 36 (78)
T 3hvz_A 11 FTPKGDVISLPIGSTVIDFAYAIHSA 36 (78)
T ss_dssp ECTTSCEEEEETTCBHHHHHHHHCHH
T ss_pred ECCCCCEEEecCCCCHHHHHHHhhhh
Confidence 45789999999999999999998644
No 106
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.62 E-value=96 Score=27.08 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCcC-CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVES-GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~d-g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+.. .--|..|+|++...=+-++.+..++-+...+-+++..+
T Consensus 59 ~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 114 (301)
T 3m5v_A 59 HEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY 114 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 46799999999999887 67888899874333333333332222233567777654
No 107
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=22.60 E-value=2.3e+02 Score=24.12 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=37.1
Q ss_pred cCcCCCEEEE-C-CChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCc-EEEcCCC-------ccccEEEEc
Q 024953 44 FVESGMVLGL-G-TGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIP-LSDLDSY-------PVVDLAIDG 113 (260)
Q Consensus 44 lI~dg~~I~L-g-sGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~-v~~l~~~-------~~~D~af~G 113 (260)
-+++|++|.+ | +|..=...++.+... + . .+.++.++.+ ...+++.|.. ++..... ..+|++|+.
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~---G-a-~vi~~~~~~~-~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~ 222 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK---G-T-TVITTASKRN-HAFLKALGAEQCINYHEEDFLLAISTPVDAVIDL 222 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHT---T-C-EEEEEECHHH-HHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEES
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc---C-C-EEEEEeccch-HHHHHHcCCCEEEeCCCcchhhhhccCCCEEEEC
Confidence 5689999988 3 565555444444322 2 2 3554544433 5556777765 3433322 147888876
Q ss_pred cCc
Q 024953 114 ADE 116 (260)
Q Consensus 114 adg 116 (260)
+.+
T Consensus 223 ~g~ 225 (321)
T 3tqh_A 223 VGG 225 (321)
T ss_dssp SCH
T ss_pred CCc
Confidence 543
No 108
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.96 E-value=1e+02 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChh-HHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGST-AKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST-~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+...--|..|+|++ +...++ +.+...+-+...+-+++..+
T Consensus 52 ~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~-la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 52 FEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVH-LTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHH-HHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHH-HHHHHHhcCCCEEEECCCCC
Confidence 4678999999999887667788888873 333333 33222222233577777654
No 109
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.91 E-value=1.1e+02 Score=26.86 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChh-HHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGST-AKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST-~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+...--|..|+|++ +...++ +.+..++-+...+-++|..+
T Consensus 68 ~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~-la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 68 AAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVE-LAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHH-HHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHH-HHHHHHhcCCCEEEECCCCC
Confidence 4678999999999887666788888873 333333 33222222233577777654
No 110
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.79 E-value=87 Score=27.31 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+...--|..|+|++...=+-++.+..++-+...+-+++..+
T Consensus 59 ~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 113 (297)
T 3flu_A 59 VEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY 113 (297)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4678999999999887666778888864333333333322222233567777554
No 111
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.71 E-value=1.1e+02 Score=26.58 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+.. |..|+|++...=+-++.+..++-+...+-++|..+
T Consensus 51 ~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (288)
T 2nuw_A 51 KDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYY 102 (288)
T ss_dssp HHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCS
T ss_pred HHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 46799999999998765 76787773322233333322222233466666553
No 112
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=20.60 E-value=4.2e+02 Score=23.27 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred cCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCC-------------ccccE
Q 024953 44 FVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSY-------------PVVDL 109 (260)
Q Consensus 44 lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~-------------~~~D~ 109 (260)
-+++|++|.+ |+|..=...+ .|+... + ...+.++..|..-...+++.|..++...+. ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~ai-qlAk~~--G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAA-ASARLL--G-AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHH-HHHHHT--T-CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHH-HHHHHC--C-CCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 4678997775 6654444343 344321 1 113566666766666778888765543211 14788
Q ss_pred EEEccC
Q 024953 110 AIDGAD 115 (260)
Q Consensus 110 af~Gad 115 (260)
+|+.+.
T Consensus 258 vid~~G 263 (398)
T 1kol_A 258 AVDAVG 263 (398)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 887664
No 113
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.57 E-value=1e+02 Score=26.68 Aligned_cols=52 Identities=8% Similarity=-0.023 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.+||+++.+.+++.+.. |..|+|++...=+-++.+..++-+...+-++|..+
T Consensus 50 ~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 101 (286)
T 2r91_A 50 LQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPPYY 101 (286)
T ss_dssp HHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCS
T ss_pred HHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 46799999999998765 77788773332233333222222233466666654
No 114
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.05 E-value=79 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (260)
Q Consensus 31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl 85 (260)
.++|+++.+.+++.+...--|..|+|++...=+-++.+..++-+...+-+++..+
T Consensus 74 ~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 128 (315)
T 3si9_A 74 HEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY 128 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5678999999999887777788888864333333333332222233567777554
Done!