RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024953
(260 letters)
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 476 bits (1226), Expect = e-172
Identities = 223/266 (83%), Positives = 238/266 (89%), Gaps = 8/266 (3%)
Query: 1 MAIA----ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 56
MAIA I +EK S S LS PVILTQDELKKIAAYKAVEFVESGMVLGLGTG
Sbjct: 1 MAIAYPPFIGSEKDSMEVG--SMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 58
Query: 57 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADE 116
STAKHAVDRIGELLRQGKL NI+GIPTSKKTHEQAVSLGIPLSDLDS+PVVDLAIDGADE
Sbjct: 59 STAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADE 118
Query: 117 VDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFT 176
VDP +NLVKGRGGSLLREKM+EGACKKFVVIVDESKLV H+GGSGLAMPVEVVP+CWKFT
Sbjct: 119 VDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFT 178
Query: 177 AKRLQDLFEDCGCVAKLRT--TGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGV 234
A++LQ LFE GCVAKLRT GE+PFVTDNGNY++DLY K+DIGDLKVASD ILRLAGV
Sbjct: 179 AEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLAGV 238
Query: 235 VEHGMFLDMATTVIVASELGVTIRNK 260
VEHGMFLDMATTVIVA ELGVTI++K
Sbjct: 239 VEHGMFLDMATTVIVAGELGVTIKDK 264
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 290 bits (745), Expect = e-100
Identities = 117/221 (52%), Positives = 150/221 (67%), Gaps = 10/221 (4%)
Query: 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
LK+ AA AV++VE GMV+GLGTGST + ++ +GE +R+ L NIVG+PTS +T E A
Sbjct: 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGL-NIVGVPTSFQTEELAR 59
Query: 93 SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
LGIPL+DLD P +DLAIDGADEVDP +NL+KG GG+LLREK+V A KKF+VI DESK
Sbjct: 60 ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119
Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVI 210
LV LG L PVEVVP+ W + A+ L+ L G LR P VTDNGNY++
Sbjct: 120 LVERLGEFPL--PVEVVPFAWSYVARELEKL----GGKPVLREGSGKGGPVVTDNGNYIL 173
Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVAS 251
D++ I D + + + GVVEHG+FL+MA VIV +
Sbjct: 174 DVHF-GTIEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 288 bits (739), Expect = 4e-99
Identities = 119/224 (53%), Positives = 154/224 (68%), Gaps = 8/224 (3%)
Query: 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
LK+ AA A E+VE GMV+GLGTGST + ++ +GE ++Q L +IVG+PTSK+T E A
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELAR 59
Query: 93 SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
LGIPLS LD P +DLAIDGADEVDP + L+KG GG+LLREK+V A K+F+VI DESK
Sbjct: 60 ELGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESK 119
Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVID 211
LV LG L PVEVVP+ WK A++L+ L G LR + P VTDNGNY++D
Sbjct: 120 LVDKLGKFPL--PVEVVPFAWKAVARKLEKL----GGEPTLRQGNKGGPVVTDNGNYILD 173
Query: 212 LYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
+ K I D + + + + GVVE G+F+DMA TVIV ++ GV
Sbjct: 174 CHFGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDGV 217
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 283 bits (728), Expect = 2e-97
Identities = 108/230 (46%), Positives = 147/230 (63%), Gaps = 11/230 (4%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
TQDELKK AA A E+VE GM++GLGTGSTA + +D +GE +++G I G+PTS+ +
Sbjct: 2 TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGL--IIGGVPTSEAST 59
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E A LGIPL DL+ +DL +DGADE+DP +NL+KG G +L REK+V A K+F+ IV
Sbjct: 60 ELAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIV 119
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
DESKLV LG L PVEV+P+ A+ L+ L G +LR P VTDNGNY
Sbjct: 120 DESKLVDVLGKFPL--PVEVIPFARSAVARELEKL----GGQPELRMDE--PVVTDNGNY 171
Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIR 258
++D++ + I D + + + GVVEHG+F + A V+V + GV
Sbjct: 172 ILDVHFGR-IPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDGVKTL 220
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 252 bits (645), Expect = 9e-85
Identities = 110/235 (46%), Positives = 152/235 (64%), Gaps = 12/235 (5%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELKK AA A+E+V+ GMV+GLGTGSTA + ++ +G ++ +I G+PTS +T
Sbjct: 2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGEL--DIGGVPTSFQTE 59
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E A LGIP+S L+ +DLAIDGADEVDP +NL+KG GG+LLREK+V A K+F+VIV
Sbjct: 60 ELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIV 119
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNG 206
DESKLV LG L PVEV+P+ ++L+ L G LR + P +TDNG
Sbjct: 120 DESKLVEVLGKFPL--PVEVIPFARSAVLRKLEKL----GGKPTLREGEGKDGPVITDNG 173
Query: 207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA-SELGVTIRNK 260
NY++D++ + I D + + + GVVE+G+F A VI+A ++ GV I K
Sbjct: 174 NYILDVHFGR-IEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 241 bits (617), Expect = 3e-81
Identities = 98/178 (55%), Positives = 122/178 (68%), Gaps = 7/178 (3%)
Query: 78 IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMV 137
IVG+PTS +T E A LGIPLSDLD +DLAIDGADEVDP +NL+KG GG+LLREK+V
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60
Query: 138 EGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG 197
A KKF+VIVDESKLV LG L PVEVVP+ W + +RL++L G KLR
Sbjct: 61 ASAAKKFIVIVDESKLVDVLGKFPL--PVEVVPFAWSYVLRRLEEL----GGEPKLRMGE 114
Query: 198 EQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
P VTDNGNY++D++ + I D + + + GVVEHG+FL MA VIV ++ GV
Sbjct: 115 GGPVVTDNGNYILDVHFGR-IEDPEELEKELKNIPGVVEHGLFLGMADKVIVGTKDGV 171
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 179 bits (456), Expect = 3e-56
Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 6/229 (2%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
LK + + + M LG+GTGST + + ++ +L+++ + NI G+ TS K A
Sbjct: 6 ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLA 64
Query: 92 VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
LGI + +++ +DLAIDGADEVDP +N++KG GG+L REK+++ +FVV+VDE+
Sbjct: 65 KELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDET 124
Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 211
K+V +LG + +PVEV + W ++++ + + R + F+TDNGNY++D
Sbjct: 125 KIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILD 180
Query: 212 LYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
L K I K + ++ L GV E G FLDMA VIV ++ GV I K
Sbjct: 181 CKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 39.3 bits (91), Expect = 6e-04
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 36/115 (31%)
Query: 49 MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-------------HEQAVSLG 95
MV+GLGTGST + +GE L++G++++IVG PT ++ A
Sbjct: 22 MVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHD 81
Query: 96 IPLSD----------------------LDSYPVVDLAIDGAD-EVDPFMNLVKGR 127
I + LD +DLA+DGA + LV GR
Sbjct: 82 IIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAGYRAGTVIVLVDGR 136
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain. The sensor
domains of the DeoR are catalytically inactive versions
of the ISOCOT fold, but retain the substrate binding
site. DeorC senses diverse sugar derivatives such as
deoxyribose nucleoside (DeoR), tagatose phosphate
(LacR), galactosamine (AgaR), myo-inositol (Bacillus
IolR) and L-ascorbate (UlaR).
Length = 162
Score = 36.3 bits (85), Expect = 0.006
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 36/147 (24%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT----SKKT 87
E K+ A A +E G + L G+T + + +TN + S+K
Sbjct: 5 EEKRRIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVITN--SLNIANELSEKP 62
Query: 88 HEQAVSLG-------------IPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGG---SL 131
+ + + LG + L + VD A GA+ +D GG S
Sbjct: 63 NIEVILLGGEVRPKTGSFVGPLAEEFLRQF-NVDKAFIGANGIDL-------EGGLTTSD 114
Query: 132 LRE-----KMVEGACKKFVVIVDESKL 153
E M+E A + ++ D SK
Sbjct: 115 EEEAEVKRAMIERARRVILL-ADSSKF 140
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 36.1 bits (84), Expect = 0.011
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 30/144 (20%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT----SKKT 87
E K+ A A +E G + L G+T + + +TN + +K
Sbjct: 76 EEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDDNNLTVITN--SLNIAAALLEKP 133
Query: 88 HEQAVSLG-------------IPLSDLDSYPVVDLAIDGADEVDP---FM--NLVKGRGG 129
+ + + LG + L + D A GAD +D N +
Sbjct: 134 NIEVILLGGTVRKKSGSFVGPLAEEFLRQF-NFDKAFIGADGIDLEGGLTTFNEEEAE-- 190
Query: 130 SLLREKMVEGACKKFVVIVDESKL 153
++ M+E A + ++ D SK
Sbjct: 191 --VKRAMIEAAREVILL-ADSSKF 211
>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 31.2 bits (71), Expect = 0.50
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
A K V + +G V GLG G AK AV R G LL K + PT + T
Sbjct: 203 ALKNVVAIAAGFVDGLGWGDNAKAAVMRRG-LLEMIKFARMFF-PTGEVT 250
>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate
dehydrogenase C-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
C-terminal substrate-binding domain.
Length = 145
Score = 29.9 bits (68), Expect = 0.62
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 37 AAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG 80
A K V + +G++ GLG G K A+ G L+ K +G
Sbjct: 10 GALKNVIAIAAGILDGLGFGDNTKAALITRG-LMEMIKFGAALG 52
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 29.0 bits (65), Expect = 2.7
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 97 PLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH 156
PL + +V LA +G DP + R R+ M +K ++ + V
Sbjct: 14 PLQVEKTKKMVKLACEGLYGCDPLELELDSR--IQFRDGMTTKEIQKSLIQT-AIEKVIQ 70
Query: 157 LGGSGLAMPVEVVPYCWKFTAKRL--QDLFEDCGCVAKLRTTGEQPF------VTDN--- 205
+ W++ A RL DL+++ + G + + +
Sbjct: 71 NSKDNNGNNTKKTNPNWQYVAARLYVFDLYKEARINRHYNSFGYGDYYELVKKLVEEKLY 130
Query: 206 GNYVIDLYLKKDIGDL 221
G Y++ Y K++I +L
Sbjct: 131 GEYLLQNYSKEEIKEL 146
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 29.1 bits (65), Expect = 2.9
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 88 HEQAV-SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVV 146
H Q + LS + ++ + GA E++ + K S + + + K
Sbjct: 158 HFQDLHDTPRGLSPFLPWGPINQRVLGAKEIEYETH--KEENYSPSLKSPKKESQGKVDE 215
Query: 147 IVDESKLVP 155
+ D S+ P
Sbjct: 216 LKDHSEKHP 224
>gnl|CDD|224394 COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine
biosynthesis [Coenzyme metabolism].
Length = 337
Score = 28.8 bits (65), Expect = 2.9
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 27 ILTQDEL---KKIAAYKAVEFVESGMV------LGLGTGSTAK-HAVDRIGELLRQGKLT 76
+ + +E+ + Y +E + G + + L G AK +AVD+ E L +
Sbjct: 135 VPSPEEIDEALALVGYDKLELDDRGTLVLKKPGMKLDLGGIAKGYAVDKAAEALEAEGIK 194
Query: 77 N 77
+
Sbjct: 195 S 195
>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase. Coenzyme A (CoA)
transferases belong to an evolutionary conserved family
of enzymes catalyzing the reversible transfer of CoA
from one carboxylic acid to another. They have been
identified in many prokaryotes and in mammalian tissues.
The bacterial enzymes are heterodimer of two subunits (A
and B) of about 25 Kd each while eukaryotic SCOT consist
of a single chain which is colinear with the two
bacterial subunits.
Length = 212
Score = 27.9 bits (63), Expect = 4.9
Identities = 25/152 (16%), Positives = 37/152 (24%), Gaps = 45/152 (29%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQG------------------------ 73
A +A ++ G + LG I L+RQG
Sbjct: 2 AAEAAREIKDGDTVALGGFGGLPTPAALILALIRQGPKDLTLISENGGLGLGLLAGEGDV 61
Query: 74 KLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLV--------- 124
K + + I L + D GA V F L
Sbjct: 62 KKIIAGHVGLTPLLGRLYFDGEIESFLLPQGGLADRLRAGAAGVPGFGTLAGLGTDVDPR 121
Query: 125 --------KGRGGSLLREKMVEGACKKFVVIV 148
G GG+ L A + V ++
Sbjct: 122 YEGGKVRPFGMGGAYLLVP----AIRPDVALI 149
>gnl|CDD|223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
IMP cyclohydrolase domain in Aful) [Nucleotide transport
and metabolism].
Length = 515
Score = 28.0 bits (63), Expect = 6.2
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 28 LTQDELKK-IAAYKAVEFVES--------GMVLGLGTGST-----AKHAVDRIGE 68
T+ EL+ + A+K V+ V+S G +G+G G A+ A ++ G+
Sbjct: 395 PTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGD 449
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 27.6 bits (62), Expect = 6.9
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 51 LGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGI-----PLSDLDSYP 105
LGL GS L +G ++ + G ++ ++A+ LG+ +L
Sbjct: 8 LGLMGGSLGL-------ALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCD 60
Query: 106 VVDLAI 111
V+ LAI
Sbjct: 61 VIFLAI 66
>gnl|CDD|226134 COG3607, COG3607, Predicted lactoylglutathione lyase [General
function prediction only].
Length = 133
Score = 26.6 bits (59), Expect = 8.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEG 139
L+ +EVD ++ GG E EG
Sbjct: 77 LSAGSREEVDELVDKALEAGGKPANEPQDEG 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.389
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,429,226
Number of extensions: 1315375
Number of successful extensions: 1306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1281
Number of HSP's successfully gapped: 38
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)