Query 024954
Match_columns 260
No_of_seqs 119 out of 225
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 10.6 1.4E+02 0.0049 18.7 1.9 16 28-43 17-32 (37)
2 1mqs_B SED5P, integral membran 10.5 96 0.0033 21.0 1.1 21 24-44 6-26 (50)
3 2k8j_X P7TM2; P7 polypeptide, 9.7 30 0.001 21.0 -1.4 9 107-115 9-17 (29)
4 2plx_B Peptide inhibitor; heli 9.0 1.2E+02 0.004 17.5 0.9 11 32-42 16-26 (26)
5 2ra6_A Trichosurin; lipocalin, 8.1 91 0.0031 24.2 0.3 18 100-117 16-33 (166)
6 2vzy_A RV0802C; transferase, G 8.1 85 0.0029 24.6 0.1 33 91-123 183-215 (218)
7 3ux4_A Acid-activated UREA cha 7.6 7.5E+02 0.026 21.0 5.9 29 195-223 73-104 (195)
8 2cmy_B Beta trypsin, veronica 7.6 1.3E+02 0.0045 18.3 0.8 13 31-43 20-32 (34)
9 1pjv_A Cobatoxin 1, COTX1, GTI 6.3 1.7E+02 0.0058 17.8 0.8 17 33-49 5-21 (32)
10 2yg2_A Apolipoprotein M; lipid 5.7 77 0.0026 26.7 -1.3 18 103-120 22-39 (172)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=10.58 E-value=1.4e+02 Score=18.72 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.1
Q ss_pred CCChhHHHHHHHhhhc
Q 024954 28 DADPLYRACVKQCEET 43 (260)
Q Consensus 28 D~lp~f~~Cv~~C~~~ 43 (260)
|.-.+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 6667889999999854
No 2
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=10.48 E-value=96 Score=20.98 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCCCChhHHHHHHHhhhcC
Q 024954 24 ASAGDADPLYRACVKQCEETG 44 (260)
Q Consensus 24 AS~GD~lp~f~~Cv~~C~~~~ 44 (260)
.|.=||..||+.|++.=++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 456799999999999988654
No 3
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=9.73 E-value=30 Score=20.98 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=6.2
Q ss_pred ccccccCce
Q 024954 107 KYHGKWPFI 115 (260)
Q Consensus 107 QFhGKWPF~ 115 (260)
-+.|+||+.
T Consensus 9 ~~~g~Wpll 17 (29)
T 2k8j_X 9 ALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 467888863
No 4
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=9.02 E-value=1.2e+02 Score=17.51 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=8.4
Q ss_pred hHHHHHHHhhh
Q 024954 32 LYRACVKQCEE 42 (260)
Q Consensus 32 ~f~~Cv~~C~~ 42 (260)
.-+.|++.|++
T Consensus 16 llrrcldncek 26 (26)
T 2plx_B 16 LLRRCLDNCEK 26 (26)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhcccC
Confidence 45789999973
No 5
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=8.07 E-value=91 Score=24.22 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=5.7
Q ss_pred hcCCCCcccccccCceec
Q 024954 100 ALGHGPVKYHGKWPFIRV 117 (260)
Q Consensus 100 ~~g~~i~QFhGKWPF~Rv 117 (260)
..+....||-|||=-+-.
T Consensus 16 ~~~fd~~~~~G~Wy~ia~ 33 (166)
T 2ra6_A 16 EKERKWEQLSRHWHTVVL 33 (166)
T ss_dssp ----------CBCEEEEE
T ss_pred ccCCCchhcceEeEEEEE
Confidence 345678899999966544
No 6
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=8.06 E-value=85 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=22.2
Q ss_pred chhhhhhhhhcCCCCcccccccCceecccccch
Q 024954 91 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEP 123 (260)
Q Consensus 91 m~~~t~~r~~~g~~i~QFhGKWPF~Rv~GiQEp 123 (260)
+..+.++..+.....+|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444444444445568899999999999999887
No 7
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=7.64 E-value=7.5e+02 Score=20.97 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhccccchHH
Q 024954 195 FDYSSAVALLGFS---LILAILRSFNVRDEAA 223 (260)
Q Consensus 195 lDYf~A~a~vl~~---l~~~~~R~f~l~~~~~ 223 (260)
.||++|+...+|+ +|+++-|.++++.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6788887777887 4567888999886543
No 8
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=7.63 E-value=1.3e+02 Score=18.27 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=8.0
Q ss_pred hhHHHHHHHhhhc
Q 024954 31 PLYRACVKQCEET 43 (260)
Q Consensus 31 p~f~~Cv~~C~~~ 43 (260)
..-+.|++.|+++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 4568899999864
No 9
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2
Probab=6.29 E-value=1.7e+02 Score=17.80 Aligned_cols=17 Identities=41% Similarity=0.890 Sum_probs=12.8
Q ss_pred HHHHHHHhhhcCCCCCC
Q 024954 33 YRACVKQCEETGCVGQK 49 (260)
Q Consensus 33 f~~Cv~~C~~~~C~~~~ 49 (260)
.++|...|.+.++..++
T Consensus 5 s~~C~~~Cr~~G~~~GK 21 (32)
T 1pjv_A 5 YRTCDKDCKRRGYRSGK 21 (32)
T ss_dssp HHHHHHHHHTTTSSEEE
T ss_pred chhHhHHHHhcCCCCce
Confidence 46899999877776554
No 10
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC; 1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A
Probab=5.75 E-value=77 Score=26.69 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.2
Q ss_pred CCCcccccccCceecccc
Q 024954 103 HGPVKYHGKWPFIRVYGI 120 (260)
Q Consensus 103 ~~i~QFhGKWPF~Rv~Gi 120 (260)
+.+.|+.|||-|+.-.+=
T Consensus 22 e~p~~~lGkW~FvAGa~~ 39 (172)
T 2yg2_A 22 EFPEVHLGQWYFIAGAAP 39 (172)
T ss_dssp CHHHHTCEEEEEEEEEES
T ss_pred cCccceeeEEEEEEeccC
Confidence 347799999999987553
Done!