BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024955
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJ5|A Chain A, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
pdb|1SJ5|B Chain B, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
Length = 164
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 140 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199
P ++L +E GT +LPI + L AM ++ RP + ++ ++E + V V
Sbjct: 30 PVVILGIE-GTNRVLPIWIGAAEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVI 88
Query: 200 VTKRVHEAYFAQL------YLTKVGNETECVSFDLRPSDAINIAVRC 240
+ ++A L Y + E + D RPSDAI +AV+
Sbjct: 89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKT 135
>pdb|1VJL|A Chain A, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VJL|B Chain B, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
Length = 164
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 140 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199
P ++L +E GT +LPI + L A + RP + ++ ++E + V V
Sbjct: 30 PVVILGIE-GTNRVLPIWIGACEGHALALAXEKXEFPRPLTHDLLLSVLESLEARVDKVI 88
Query: 200 VTKRVHEAYFAQL------YLTKVGNETECVSFDLRPSDAINIAVRC 240
+ ++A L Y + E + D RPSDAI +AV+
Sbjct: 89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKT 135
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 182 QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGN 219
Q + IE +GYEV+LV+ K + + ++L L VGN
Sbjct: 18 QSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGN 55
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 182 QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGN 219
Q + IE +GYEV+LV+ K + + ++L L VGN
Sbjct: 18 QSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGN 55
>pdb|2B94|A Chain A, Structural Analysis Of P Knowlesi Homolog Of P Falciparum
Pnp
Length = 267
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 136 YAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQ 174
Y PH I ++ED + + ++ +E+ ++++M +R V+
Sbjct: 183 YYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVK 221
>pdb|3EMV|A Chain A, Crystal Structure Of Plasmodium Vivax Pnp With Sulphate
Length = 253
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 136 YAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQ 174
Y PH I ++ED + + ++ +E+ ++++M +R V+
Sbjct: 161 YYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVK 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,851,411
Number of Sequences: 62578
Number of extensions: 250503
Number of successful extensions: 521
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)