BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024955
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 362 bits (929), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/245 (74%), Positives = 203/245 (82%), Gaps = 12/245 (4%)
Query: 1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
M S+Q PV CPA+R RQ G + V TG +K R S+ WG KG+ + T +
Sbjct: 1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55
Query: 58 RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
R N K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56 RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111
Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171
Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231
Query: 238 VRCKV 242
VRCK+
Sbjct: 232 VRCKI 236
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 348 bits (893), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/242 (69%), Positives = 198/242 (81%), Gaps = 2/242 (0%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
M SLQ PV CP+VR RQ G+ + + V K R R + WG + K++ +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58
Query: 61 NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
+ R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR
Sbjct: 59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118
Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178
Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238
Query: 241 KV 242
KV
Sbjct: 239 KV 240
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 281 bits (720), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/243 (57%), Positives = 189/243 (77%), Gaps = 9/243 (3%)
Query: 3 SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
+++GP+ C AV + + N++ +G + A F + ++ +T + + + ++
Sbjct: 2 AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59
Query: 60 QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
A C +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60 NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115
Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
+LRCVHNN QG ++P+ AP PAIVL++EDG+ LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175
Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235
Query: 240 CKV 242
CKV
Sbjct: 236 CKV 238
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 228 bits (580), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKV 242
A RCKV
Sbjct: 240 AFRCKV 245
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 227 bits (578), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKV 242
A RCKV
Sbjct: 240 AFRCKV 245
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 226 bits (577), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKV 242
A RCKV
Sbjct: 240 AFRCKV 245
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
P ++L+ +G L PI + + + + + V+ RP + +++++I +G+ ++ V
Sbjct: 17 QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75
Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKV 242
R+ ++A L + + RPSD++ IA+R V
Sbjct: 76 RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGV 113
>sp|A0K9L0|SYM_BURCH Methionine--tRNA ligase OS=Burkholderia cenocepacia (strain HI2424)
GN=metG PE=3 SV=1
Length = 718
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|Q1BUH6|SYM_BURCA Methionine--tRNA ligase OS=Burkholderia cenocepacia (strain AU
1054) GN=metG PE=3 SV=2
Length = 718
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|B4E8E0|SYM_BURCJ Methionine--tRNA ligase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=metG PE=3 SV=1
Length = 718
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|Q8ES39|Y804_OCEIH Putative ABC transporter ATP-binding protein OB0804
OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=OB0804 PE=3 SV=1
Length = 527
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 156 IIVLEMPSV---LLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQL 212
I++ E P L +RN QIA P Y +E I+K+ +E + + V VH ++ Q
Sbjct: 230 ILIDEKPETAFQLHQNMLRNQQIAIPMKYLDNQETIKKVSHE-KSMPVCLEVHHLHYYQ- 287
Query: 213 YLTKVGNETECVSFDLRPSDAINI-----AVRCKVLSTLVGARSFH 253
K + +SF ++ + I I A + +L L+G + +H
Sbjct: 288 ---KKSAILKDISFSVKQGEFITILGENGAGKSTLLQCLIGLKKYH 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,580,718
Number of Sequences: 539616
Number of extensions: 3735790
Number of successful extensions: 9258
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9250
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)