Query 024955
Match_columns 260
No_of_seqs 138 out of 530
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 6.2E-35 1.4E-39 241.3 12.6 116 133-252 8-123 (135)
2 COG1259 Uncharacterized conser 100.0 1.7E-33 3.6E-38 239.5 13.8 119 130-251 10-128 (151)
3 PF12386 Peptidase_C71: Pseudo 65.0 23 0.00049 30.5 6.1 44 176-219 56-100 (142)
4 PF13670 PepSY_2: Peptidase pr 59.0 51 0.0011 24.8 6.6 47 179-229 29-75 (83)
5 PF14305 ATPgrasp_TupA: TupA-l 55.2 31 0.00067 31.4 5.7 49 171-219 171-221 (239)
6 TIGR00638 Mop molybdenum-pteri 41.9 84 0.0018 22.0 5.2 50 196-247 9-58 (69)
7 PF14334 DUF4390: Domain of un 31.9 2E+02 0.0044 24.4 6.9 45 191-248 4-48 (165)
8 COG3212 Predicted membrane pro 25.4 2.7E+02 0.0059 23.8 6.5 56 177-234 81-138 (144)
9 cd04893 ACT_GcvR_1 ACT domains 21.1 3.4E+02 0.0074 19.9 8.8 63 175-248 9-76 (77)
10 TIGR02726 phenyl_P_delta pheny 20.6 2.9E+02 0.0064 23.7 5.8 51 196-249 7-58 (169)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=6.2e-35 Score=241.34 Aligned_cols=116 Identities=26% Similarity=0.405 Sum_probs=98.4
Q ss_pred CCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEE
Q 024955 133 LPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQL 212 (260)
Q Consensus 133 Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL 212 (260)
++..+++|+++|++++++ +.|||||+..||.+|+.++.+.+++||+|||||.++++++|.++++|+|++++||+|||+|
T Consensus 8 ~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L 86 (135)
T PF02577_consen 8 VDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARL 86 (135)
T ss_dssp EETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEE
T ss_pred EcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEE
Confidence 444556789999999977 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeeEEEEecChHHHHHHHHhcCCcEEEecccee
Q 024955 213 YLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSF 252 (260)
Q Consensus 213 ~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~~ 252 (260)
++++++ +++++|+||||||+||+|+++||||+++..-
T Consensus 87 ~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~ 123 (135)
T PF02577_consen 87 VLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLD 123 (135)
T ss_dssp EEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHH
T ss_pred EEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHh
Confidence 999777 6899999999999999999999999998653
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=239.51 Aligned_cols=119 Identities=26% Similarity=0.413 Sum_probs=108.4
Q ss_pred CCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 024955 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (260)
Q Consensus 130 ~g~Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFy 209 (260)
+-++++-.+.|++++...+++++.|||||+..||.+|+.++++..++||+||||+.++++.+|.+|++|+|++++|+|||
T Consensus 10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy 89 (151)
T COG1259 10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY 89 (151)
T ss_pred EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence 33455566778777777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEeccce
Q 024955 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARS 251 (260)
Q Consensus 210 ArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~ 251 (260)
|+|++++++ ..+.+||||||||+||+|.|+||||.|+..
T Consensus 90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~ 128 (151)
T COG1259 90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVL 128 (151)
T ss_pred EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhh
Confidence 999999988 469999999999999999999999999864
No 3
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=65.04 E-value=23 Score=30.53 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=34.4
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeE-ECCEEEEEEEEEecCc
Q 024955 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVGN 219 (260)
Q Consensus 176 ~RPlThDLl~eiLe~lG~~V~~V~It~~-~dGtFyArL~L~~gg~ 219 (260)
.--..-+|+..+++.||+.|.-+-+--. .+|+.|..+.|+-++.
T Consensus 56 NCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~~ 100 (142)
T PF12386_consen 56 NCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKHK 100 (142)
T ss_pred CchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecce
Confidence 3445678999999999998766655433 6999999999988764
No 4
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=58.96 E-value=51 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecC
Q 024955 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 229 (260)
Q Consensus 179 lThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaR 229 (260)
++.+-+...+++.|++|.+|++++ +|.|-.+..-.+|. .-.+.+|.+
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~--~~ev~vD~~ 75 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGK--KVEVYVDPA 75 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCC--EEEEEEcCC
Confidence 457888899999999999999864 67788885444443 144555554
No 5
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=55.19 E-value=31 Score=31.37 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=40.1
Q ss_pred cccCCCCCchHHHHHHHHHHhCCEEe--EEEEEeEECCEEEEEEEEEecCc
Q 024955 171 RNVQIARPTLYQVVKEMIEKMGYEVR--LVRVTKRVHEAYFAQLYLTKVGN 219 (260)
Q Consensus 171 ~g~~~~RPlThDLl~eiLe~lG~~V~--~V~It~~~dGtFyArL~L~~gg~ 219 (260)
.....+||-..+=|.++.+.+.-... ||-.+...+++||.+|.+..+++
T Consensus 171 ~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 171 PDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCCc
Confidence 35678999999999999999966544 55557888999999999987664
No 6
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=41.90 E-value=84 Score=22.01 Aligned_cols=50 Identities=10% Similarity=-0.057 Sum_probs=39.0
Q ss_pred eEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEe
Q 024955 196 RLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLV 247 (260)
Q Consensus 196 ~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~ 247 (260)
-..+|.++..+...+++.+.-+++ ..+.-..-+..+-.|+++-|.|+++.
T Consensus 9 l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 9 LKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 346777777777789999987653 25677777899999999999999875
No 7
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=31.91 E-value=2e+02 Score=24.37 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=34.6
Q ss_pred hCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEec
Q 024955 191 MGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVG 248 (260)
Q Consensus 191 lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k 248 (260)
-+++|+.++++ ..+|.++.+ ..+|...++.+.=|++.|+|++..=
T Consensus 4 ~~~~i~~~~~~-~~~~~l~l~------------a~~~~~l~~~l~~AL~~Gipl~f~~ 48 (165)
T PF14334_consen 4 QSIEIRSAELE-NSDGGLYLS------------ADVDFELSPELEDALKNGIPLYFVF 48 (165)
T ss_pred CccEEEEEEEE-EeCCEEEEE------------EEEeccCCHHHHHHHHcCCeEEEEE
Confidence 35678888888 577777633 2477788999999999999988653
No 8
>COG3212 Predicted membrane protein [Function unknown]
Probab=25.43 E-value=2.7e+02 Score=23.81 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCchH-HHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEec-CceeeEEEEecChHHHH
Q 024955 177 RPTLY-QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKV-GNETECVSFDLRPSDAI 234 (260)
Q Consensus 177 RPlTh-DLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~g-g~e~e~~~iDaRPSDAI 234 (260)
.+.+. .++.-.++..+.+|..+.+.. .+|.++=++.+..+ +.+ .++.+||+..+-|
T Consensus 81 ~iis~~ea~~iAl~~~~G~v~dieLe~-~~g~~vYevei~~~d~~e-~ev~iDA~TG~Il 138 (144)
T COG3212 81 TIISLEEAKEIALKRVPGKVDDIELEE-DNGRLVYEVEIVKDDGQE-YEVEIDAKTGKIL 138 (144)
T ss_pred cccCHHHHHHHHHHHCCCceeEEEEec-cCCEEEEEEEEEeCCCcE-EEEEEecCCCCcc
Confidence 44443 355566777777999999986 77999989999886 433 7899999876543
No 9
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=21.09 E-value=3.4e+02 Score=19.88 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHH-----HHHhcCCcEEEec
Q 024955 175 IARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAIN-----IAVRCKVLSTLVG 248 (260)
Q Consensus 175 ~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRPSDAIA-----LAlR~kaPI~V~k 248 (260)
+.||-.-.=+.+++...|..+..+.-+. .+|.|+.++.++... .+-+++. +|-++++-|.|.+
T Consensus 9 ~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~~----------~~~~~l~~~l~~~~~~~~l~i~v~~ 76 (77)
T cd04893 9 TDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGSW----------DAIAKLEAALPGLARRLDLTLMMKR 76 (77)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEecc----------ccHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4677777777888999999999999988 889999999996431 1233333 6666777776643
No 10
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=20.57 E-value=2.9e+02 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=39.1
Q ss_pred eEEEEEeEECCEEE-EEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEecc
Q 024955 196 RLVRVTKRVHEAYF-AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGA 249 (260)
Q Consensus 196 ~~V~It~~~dGtFy-ArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~ 249 (260)
.+..|.+ .|||+- .++++...|+ +...++.|=+.||.+.-+.+.|+.|--.
T Consensus 7 i~~~v~d-~dGv~tdg~~~~~~~g~--~~~~~~~~D~~~~~~L~~~Gi~laIiT~ 58 (169)
T TIGR02726 7 IKLVILD-VDGVMTDGRIVINDEGI--ESRNFDIKDGMGVIVLQLCGIDVAIITS 58 (169)
T ss_pred CeEEEEe-CceeeECCeEEEcCCCc--EEEEEecchHHHHHHHHHCCCEEEEEEC
Confidence 4555666 455553 6788877664 6899999999999999999999988533
Done!