Query 024955
Match_columns 260
No_of_seqs 138 out of 530
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 4.1E-39 1.4E-43 275.4 14.9 123 129-252 19-147 (164)
2 1u8s_A Glycine cleavage system 27.9 1.4E+02 0.0049 24.0 6.5 75 176-254 102-183 (192)
3 1zpv_A ACT domain protein; str 24.0 1.8E+02 0.0063 20.1 6.4 74 175-253 13-86 (91)
4 3zzy_A Polypyrimidine tract-bi 19.7 1.7E+02 0.0058 23.1 5.2 39 176-216 37-75 (130)
5 4exr_A Putative lipoprotein; Y 19.6 3.8E+02 0.013 22.0 8.4 48 181-230 117-164 (174)
6 2e5i_A Heterogeneous nuclear r 19.5 1.5E+02 0.0052 23.0 4.8 38 176-216 34-71 (124)
7 3fbs_A Oxidoreductase; structu 17.4 3.2E+02 0.011 22.0 6.6 109 103-216 81-209 (297)
8 2pt7_G HP1451, hypothetical pr 17.2 1.6E+02 0.0053 24.3 4.6 34 180-213 7-40 (152)
9 3oov_A Methyl-accepting chemot 14.8 3E+02 0.01 19.8 5.3 71 179-249 20-91 (169)
10 2nyi_A Unknown protein; protei 12.8 5.5E+02 0.019 20.8 6.9 62 177-248 103-174 (195)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=4.1e-39 Score=275.43 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEE
Q 024955 129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY 208 (260)
Q Consensus 129 q~g~Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtF 208 (260)
++.++|+++++|+|+|++++++ +.|||||+..||.+|+.+++|.+++||+|||||.++++++|+++++|+|++++||||
T Consensus 19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf 97 (164)
T 1vjl_A 19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF 97 (164)
T ss_dssp EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence 5889999999999999999887 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEE------ecCceeeEEEEecChHHHHHHHHhcCCcEEEecccee
Q 024955 209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSF 252 (260)
Q Consensus 209 yArL~L~------~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~~ 252 (260)
||+|+++ +++++.+.+++|+|||||||||+|+++||||+++..-
T Consensus 98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~ 147 (164)
T 1vjl_A 98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVE 147 (164)
T ss_dssp EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHH
T ss_pred EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHh
Confidence 9999999 6653446899999999999999999999999998653
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=27.92 E-value=1.4e+02 Score=24.01 Aligned_cols=75 Identities=4% Similarity=-0.025 Sum_probs=48.6
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeE-------ECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEec
Q 024955 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-------VHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVG 248 (260)
Q Consensus 176 ~RPlThDLl~eiLe~lG~~V~~V~It~~-------~dGtFyArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k 248 (260)
.||-.-.=+.++|...|+.|..+.+... ..+.||.++.+..+.+ ..++.==.+=..+|-++++-|.+.+
T Consensus 102 D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~ 177 (192)
T 1u8s_A 102 DKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG----CNLMQLQEEFDALCTALDVQGSLNF 177 (192)
T ss_dssp CCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT----SCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCC----CCHHHHHHHHHHHHHHhCceEEEEE
Confidence 4676656677888899999999888754 4689999999865431 1112212233367778899988888
Q ss_pred cceeee
Q 024955 249 ARSFHL 254 (260)
Q Consensus 249 ~~~~~~ 254 (260)
+..|..
T Consensus 178 ~~~~~~ 183 (192)
T 1u8s_A 178 IKNSQE 183 (192)
T ss_dssp EEC---
T ss_pred ccccCC
Confidence 776643
No 3
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=23.95 E-value=1.8e+02 Score=20.07 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEeccceee
Q 024955 175 IARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFH 253 (260)
Q Consensus 175 ~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~~~ 253 (260)
+.||-.-.=+..++...|+.|..+..... +|.|+.++.+.-.+.+ .++.=-..--.++-.+++-+.+..+..|.
T Consensus 13 ~DrpGila~vt~~la~~~~NI~~i~~~~~-~~~~~~~i~v~~~~~~----~l~~l~~~L~~~~~~~~~~~~~~~~~if~ 86 (91)
T 1zpv_A 13 KDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDEKQ----DFTYLRNEFEAFGQTLNVKINIQSAAIFE 86 (91)
T ss_dssp SCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESSCC----CHHHHHHHHHHHHHHHTEEEEEEEGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEeEEE-cCEEEEEEEEEeCCCC----CHHHHHHHHHHHHHHcCCEEEEeeHHHHH
Confidence 35777766677888888999999988764 4999999998654311 12211122224555567777777766664
No 4
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=19.68 E-value=1.7e+02 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 024955 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (260)
Q Consensus 176 ~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~ 216 (260)
+.+.|.|.|.+++...|- |.+|+|.. +..-|+|-+.+..
T Consensus 37 ~~~vte~~L~~lFs~yG~-V~~V~i~~-~~~gfqAFVef~~ 75 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYAD 75 (130)
T ss_dssp CSCCCHHHHHHHHTTSSC-EEEEEEEE-ETTEEEEEEEESC
T ss_pred CCCCCHHHHHHHHhCcCC-EEEEEEEc-CCCCcEEEEEECC
Confidence 567899999999999985 88998875 4456778887754
No 5
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=19.62 E-value=3.8e+02 Score=22.04 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecCh
Q 024955 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (260)
Q Consensus 181 hDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRP 230 (260)
-+.+.-.+++.+..+..+.+.. .+|.++=.+.+..++.+ ..+.||+.-
T Consensus 117 ~~A~~~Al~~~~G~v~e~eLd~-d~G~~vYevei~~~~~~-~ev~IDA~t 164 (174)
T 4exr_A 117 QQAMEIALKEQNGIVKEWSLDK-DLDVTFYKIRIDKDKNE-YDIKVDSKK 164 (174)
T ss_dssp HHHHHHHHHHSCSEEEEEEEEE-ETTEEEEEEEEEETTEE-EEEEEETTT
T ss_pred HHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEECCEE-EEEEEECCC
Confidence 3555566677788999999864 78988888888776543 678888864
No 6
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=19.49 E-value=1.5e+02 Score=23.01 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=28.8
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 024955 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (260)
Q Consensus 176 ~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~ 216 (260)
+.+.|.|.|.+++...|- |.+|.|.. +.| |+|-|.+..
T Consensus 34 ~~~vt~~~L~~~Fs~yG~-V~~v~i~~-~~G-f~aFVef~~ 71 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGK-VQRIVIFK-RNG-IQAMVEFES 71 (124)
T ss_dssp CSCCCHHHHHHHHTTTSC-EEEEEEEE-SSS-EEEEEEESS
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEe-CCC-CEEEEEECC
Confidence 456788899999999985 89998865 334 667777744
No 7
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=17.36 E-value=3.2e+02 Score=22.01 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=56.9
Q ss_pred EeeeCCceeEEEeccCceeEEEecCCCCCCCCCC---------CCCcEEEEEe-----cCCCceEEEEEEcchhHHHHHH
Q 024955 103 EVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDY---------APHPAIVLKM-----EDGTGLLLPIIVLEMPSVLLMA 168 (260)
Q Consensus 103 ~~~s~~~~~~~~m~~g~~l~~~~~~~q~g~Ld~~---------a~~PvIVLke-----~dg~~r~LPI~Ige~EA~aI~~ 168 (260)
.+....+++.++..+|+.+..-+.---.|.-+.. ....+..... ..++ .+-|+-+..-+..++.
T Consensus 81 ~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~v~vvG~G~~~~e~a~ 158 (297)
T 3fbs_A 81 DAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQG--KIGVIAASPMAIHHAL 158 (297)
T ss_dssp EEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTC--EEEEECCSTTHHHHHH
T ss_pred EEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCC--EEEEEecCccHHHHHH
Confidence 3445556788888888877665543333332111 0011111110 1122 3444445555666666
Q ss_pred Hhccc------CCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 024955 169 AMRNV------QIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (260)
Q Consensus 169 aL~g~------~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~ 216 (260)
.+... ....+...+.+.+.++..|+++..-.|.++..+. .+.+.+
T Consensus 159 ~l~~~g~v~~v~~~~~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~---~v~~~~ 209 (297)
T 3fbs_A 159 MLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHA---DVVLAD 209 (297)
T ss_dssp HGGGTSEEEEECTTTCCCCHHHHHHHHHTTCEEECSCEEEEETTE---EEEETT
T ss_pred HhhhcCcEEEEECCCCCCCHHHHHHHHHCCcEEEcceeeeeecCC---eEEeCC
Confidence 66431 1122234566778889999988766677777654 555543
No 8
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=17.22 E-value=1.6e+02 Score=24.29 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEE
Q 024955 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLY 213 (260)
Q Consensus 180 ThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~ 213 (260)
..+.|.++++.||.++..+.+....+++++-.|.
T Consensus 7 ~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ 40 (152)
T 2pt7_G 7 IKQELKDLFSHLPYKINKVEVSLYEPGVLLIDID 40 (152)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEe
Confidence 4578999999999988778887778888776665
No 9
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=14.77 E-value=3e+02 Score=19.77 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecCh-HHHHHHHHhcCCcEEEecc
Q 024955 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP-SDAINIAVRCKVLSTLVGA 249 (260)
Q Consensus 179 lThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL~L~~gg~e~e~~~iDaRP-SDAIALAlR~kaPI~V~k~ 249 (260)
+...++..+.+.+|++--.+-+.+-.++.+.................+...+ ...+.-+++.+-|+.+.+-
T Consensus 20 ~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 91 (169)
T 3oov_A 20 VLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYMIDDV 91 (169)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEEESCG
T ss_pred HHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEEeccc
Confidence 3344445555556655444444443345665444433211111234555543 4566778899999999743
No 10
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=12.84 E-value=5.5e+02 Score=20.77 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHHhCCEEeEEEEEeEE-----CCEEEEEEEEEecCceeeEEEEecChHHHH-----HHHHhcCCcEEE
Q 024955 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRV-----HEAYFAQLYLTKVGNETECVSFDLRPSDAI-----NIAVRCKVLSTL 246 (260)
Q Consensus 177 RPlThDLl~eiLe~lG~~V~~V~It~~~-----dGtFyArL~L~~gg~e~e~~~iDaRPSDAI-----ALAlR~kaPI~V 246 (260)
||-.---+..+|...|+.|..+.+.... .+.||.++.+.... .-. +++ .+|-++++-|.+
T Consensus 103 rpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---------~~~-~~l~~~l~~~a~~l~~di~~ 172 (195)
T 2nyi_A 103 SEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF---------PLY-QEVVTALSRVEEEFGVDIDL 172 (195)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---------GGH-HHHHHHHHHHHHHHTCEEEE
T ss_pred CcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC---------Ccc-HHHHHHHHHHHHHcCeEEEE
Confidence 5554445567899999999999998665 58999999985432 112 333 455566776666
Q ss_pred ec
Q 024955 247 VG 248 (260)
Q Consensus 247 ~k 248 (260)
.+
T Consensus 173 ~~ 174 (195)
T 2nyi_A 173 EE 174 (195)
T ss_dssp EE
T ss_pred EE
Confidence 53
Done!