Query 024956
Match_columns 260
No_of_seqs 161 out of 1658
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 1.9E-42 4.1E-47 290.0 25.2 254 6-259 8-261 (382)
2 COG0546 Gph Predicted phosphat 100.0 2.6E-32 5.7E-37 213.6 20.2 211 7-219 2-218 (220)
3 PRK10826 2-deoxyglucose-6-phos 100.0 8.9E-32 1.9E-36 211.4 21.7 209 7-216 5-217 (222)
4 PRK13288 pyrophosphatase PpaX; 100.0 3.8E-32 8.3E-37 212.4 19.5 206 8-219 2-211 (214)
5 PLN02770 haloacid dehalogenase 100.0 6E-32 1.3E-36 215.3 20.2 206 6-214 19-231 (248)
6 TIGR03351 PhnX-like phosphonat 100.0 6.1E-32 1.3E-36 212.2 19.6 208 9-217 1-218 (220)
7 TIGR01449 PGP_bact 2-phosphogl 100.0 9.9E-32 2.1E-36 210.0 20.6 205 12-217 1-212 (213)
8 PRK13226 phosphoglycolate phos 100.0 8.2E-32 1.8E-36 212.2 18.3 210 7-218 10-224 (229)
9 PLN03243 haloacid dehalogenase 100.0 9.7E-32 2.1E-36 214.3 18.8 210 7-219 22-235 (260)
10 TIGR01422 phosphonatase phosph 100.0 2E-31 4.4E-36 213.4 19.6 210 8-218 1-252 (253)
11 PLN02575 haloacid dehalogenase 100.0 6.6E-31 1.4E-35 216.5 21.0 209 7-217 129-340 (381)
12 PRK13478 phosphonoacetaldehyde 100.0 4.7E-31 1E-35 212.7 19.4 213 6-219 1-255 (267)
13 PRK11587 putative phosphatase; 100.0 1.1E-30 2.4E-35 204.5 19.8 202 8-217 2-206 (218)
14 PRK10563 6-phosphogluconate ph 100.0 9.5E-31 2.1E-35 205.5 19.3 208 7-218 2-212 (221)
15 PRK10725 fructose-1-P/6-phosph 100.0 3.1E-30 6.8E-35 197.7 21.1 185 5-192 1-186 (188)
16 COG0637 Predicted phosphatase/ 100.0 2.3E-30 4.9E-35 202.2 18.8 208 8-216 1-214 (221)
17 TIGR02253 CTE7 HAD superfamily 100.0 1.8E-30 3.9E-35 204.0 17.8 205 9-214 2-220 (221)
18 PRK13223 phosphoglycolate phos 100.0 3.4E-30 7.3E-35 207.5 19.5 210 7-217 11-228 (272)
19 TIGR01454 AHBA_synth_RP 3-amin 100.0 5.5E-30 1.2E-34 198.9 18.9 199 12-218 1-203 (205)
20 PRK13222 phosphoglycolate phos 100.0 2E-29 4.2E-34 198.8 21.5 212 7-219 4-222 (226)
21 PRK13225 phosphoglycolate phos 100.0 5.6E-30 1.2E-34 205.4 17.8 205 7-219 60-268 (273)
22 TIGR01990 bPGM beta-phosphoglu 100.0 8E-29 1.7E-33 189.4 20.0 178 11-191 1-184 (185)
23 TIGR02254 YjjG/YfnB HAD superf 100.0 4.7E-29 1E-33 196.4 19.2 203 9-217 1-223 (224)
24 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 1.2E-28 2.6E-33 188.4 20.5 180 9-191 1-185 (185)
25 PRK09449 dUMP phosphatase; Pro 100.0 8.7E-29 1.9E-33 194.8 18.2 201 8-218 2-222 (224)
26 PLN02811 hydrolase 100.0 6E-28 1.3E-32 189.3 21.2 202 16-217 1-209 (220)
27 PRK06698 bifunctional 5'-methy 100.0 1.2E-28 2.7E-33 212.5 18.0 208 7-219 239-454 (459)
28 PLN02779 haloacid dehalogenase 100.0 1.2E-27 2.7E-32 193.8 20.5 210 7-219 38-273 (286)
29 TIGR01428 HAD_type_II 2-haloal 100.0 8.2E-28 1.8E-32 185.7 18.2 179 9-194 1-194 (198)
30 PLN02919 haloacid dehalogenase 100.0 3.9E-27 8.4E-32 218.9 23.0 208 7-215 73-286 (1057)
31 PRK10748 flavin mononucleotide 100.0 1.4E-27 2.9E-32 189.3 16.6 205 6-217 7-237 (238)
32 PF13419 HAD_2: Haloacid dehal 100.0 8.3E-28 1.8E-32 181.9 14.7 175 12-191 1-176 (176)
33 PRK14988 GMP/IMP nucleotidase; 100.0 2.7E-27 5.8E-32 185.6 17.7 107 88-195 90-197 (224)
34 TIGR02252 DREG-2 REG-2-like, H 100.0 5.4E-27 1.2E-31 181.9 17.8 178 10-190 1-203 (203)
35 KOG2914 Predicted haloacid-hal 100.0 5E-26 1.1E-30 174.2 21.0 213 2-215 3-219 (222)
36 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 1.6E-25 3.6E-30 172.6 18.3 173 10-184 1-197 (197)
37 COG1011 Predicted hydrolase (H 99.9 8E-26 1.7E-30 178.6 15.4 129 89-219 97-227 (229)
38 TIGR02247 HAD-1A3-hyp Epoxide 99.9 1.5E-25 3.3E-30 174.7 16.4 179 9-193 2-197 (211)
39 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 4E-25 8.7E-30 168.6 17.2 175 11-191 1-183 (183)
40 PRK09456 ?-D-glucose-1-phospha 99.9 1.3E-24 2.7E-29 167.9 18.4 179 10-194 1-187 (199)
41 PHA02597 30.2 hypothetical pro 99.9 8.1E-25 1.7E-29 168.8 14.9 189 8-216 1-196 (197)
42 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.9E-24 4.2E-29 164.9 14.1 170 10-191 1-184 (184)
43 TIGR00338 serB phosphoserine p 99.9 5.6E-24 1.2E-28 166.9 13.4 194 4-216 9-217 (219)
44 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 3.4E-23 7.5E-28 153.5 16.4 154 11-185 1-154 (154)
45 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 1.4E-23 3E-28 159.0 11.0 161 11-184 1-175 (175)
46 PLN02954 phosphoserine phospha 99.9 8.7E-22 1.9E-26 155.0 17.1 196 6-217 9-222 (224)
47 KOG3085 Predicted hydrolase (H 99.9 3.5E-22 7.7E-27 153.6 13.9 186 6-193 4-214 (237)
48 TIGR01691 enolase-ppase 2,3-di 99.9 5.6E-21 1.2E-25 148.1 20.3 185 9-196 1-200 (220)
49 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 9E-22 2E-26 152.4 14.6 106 87-193 76-191 (201)
50 PRK11133 serB phosphoserine ph 99.9 1.1E-21 2.4E-26 160.4 14.1 184 7-209 108-304 (322)
51 TIGR00213 GmhB_yaeD D,D-heptos 99.9 2E-21 4.2E-26 147.0 12.5 123 90-215 25-175 (176)
52 PRK06769 hypothetical protein; 99.9 7.9E-22 1.7E-26 148.4 10.0 128 90-218 27-171 (173)
53 PRK08942 D,D-heptose 1,7-bisph 99.9 1.8E-21 3.9E-26 147.9 11.8 126 90-218 28-176 (181)
54 TIGR01656 Histidinol-ppas hist 99.8 8.8E-21 1.9E-25 139.1 10.2 101 91-193 27-146 (147)
55 TIGR01672 AphA HAD superfamily 99.8 1.4E-19 3E-24 141.3 16.2 147 11-197 65-216 (237)
56 PRK09552 mtnX 2-hydroxy-3-keto 99.8 1.7E-20 3.7E-25 147.0 9.9 192 10-219 4-213 (219)
57 KOG3109 Haloacid dehalogenase- 99.8 1.4E-19 3.1E-24 134.4 13.9 193 6-214 12-223 (244)
58 TIGR01685 MDP-1 magnesium-depe 99.8 3.5E-20 7.5E-25 137.9 9.5 107 88-195 42-160 (174)
59 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 1.4E-19 3E-24 130.6 12.3 98 90-192 24-131 (132)
60 PRK13582 thrH phosphoserine ph 99.8 3E-19 6.5E-24 138.7 14.3 189 9-219 1-196 (205)
61 TIGR01261 hisB_Nterm histidino 99.8 1.7E-19 3.6E-24 133.5 10.8 101 90-193 28-148 (161)
62 cd01427 HAD_like Haloacid deha 99.8 1.1E-18 2.3E-23 126.5 11.0 104 87-191 20-139 (139)
63 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 3.9E-18 8.5E-23 130.5 13.4 95 89-187 70-184 (188)
64 COG0560 SerB Phosphoserine pho 99.8 7.3E-18 1.6E-22 130.2 13.3 101 90-191 76-186 (212)
65 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 2.1E-18 4.6E-23 128.5 9.4 96 92-190 43-160 (166)
66 TIGR02137 HSK-PSP phosphoserin 99.8 4.5E-17 9.8E-22 125.3 15.9 181 10-219 2-196 (203)
67 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 1.5E-18 3.3E-23 138.7 6.2 125 93-218 122-254 (257)
68 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 1E-16 2.2E-21 124.2 16.1 178 11-191 1-197 (202)
69 TIGR01452 PGP_euk phosphoglyco 99.7 2.8E-18 6E-23 139.1 7.6 121 93-214 145-279 (279)
70 TIGR03333 salvage_mtnX 2-hydro 99.7 1E-17 2.3E-22 130.7 10.3 192 12-219 2-209 (214)
71 TIGR02726 phenyl_P_delta pheny 99.7 5.7E-18 1.2E-22 125.8 8.3 98 99-209 42-139 (169)
72 TIGR01488 HAD-SF-IB Haloacid D 99.7 1.9E-16 4.1E-21 120.0 13.1 95 89-184 71-177 (177)
73 TIGR01670 YrbI-phosphatas 3-de 99.7 2.7E-17 5.9E-22 121.4 7.7 101 99-212 36-136 (154)
74 PRK05446 imidazole glycerol-ph 99.7 2.1E-16 4.5E-21 130.1 13.0 101 90-193 29-149 (354)
75 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 8.4E-17 1.8E-21 114.9 8.7 88 91-183 29-126 (128)
76 PF00702 Hydrolase: haloacid d 99.7 6.9E-17 1.5E-21 126.2 8.5 90 90-185 126-215 (215)
77 PRK11009 aphA acid phosphatase 99.7 6E-16 1.3E-20 120.9 12.6 98 89-196 112-215 (237)
78 PRK10444 UMP phosphatase; Prov 99.7 1.6E-16 3.4E-21 126.0 8.1 73 142-214 168-245 (248)
79 COG2179 Predicted hydrolase of 99.7 1.1E-15 2.4E-20 109.3 11.0 92 92-193 47-139 (175)
80 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 2.8E-16 6E-21 125.2 6.8 79 136-214 166-249 (249)
81 PRK11590 hypothetical protein; 99.6 1.7E-14 3.7E-19 112.2 16.6 181 8-193 5-203 (211)
82 PRK09484 3-deoxy-D-manno-octul 99.6 8.3E-17 1.8E-21 122.2 3.5 108 99-219 56-169 (183)
83 PLN02645 phosphoglycolate phos 99.6 2E-16 4.3E-21 130.0 6.0 109 109-218 188-307 (311)
84 COG4229 Predicted enolase-phos 99.6 5.8E-14 1.3E-18 101.6 16.0 122 89-212 101-224 (229)
85 PRK10530 pyridoxal phosphate ( 99.6 4.9E-15 1.1E-19 120.0 10.7 118 93-213 139-260 (272)
86 TIGR01668 YqeG_hyp_ppase HAD s 99.6 1.4E-14 3E-19 108.7 11.2 99 90-198 42-142 (170)
87 PRK08238 hypothetical protein; 99.6 3.7E-14 8E-19 122.0 11.7 135 89-231 70-207 (479)
88 COG0647 NagD Predicted sugar p 99.6 1.7E-14 3.6E-19 114.1 8.6 75 145-219 187-266 (269)
89 PF06888 Put_Phosphatase: Puta 99.5 2.8E-13 6E-18 105.3 14.8 169 11-193 2-197 (234)
90 PRK01158 phosphoglycolate phos 99.5 5.4E-15 1.2E-19 116.8 5.1 69 142-213 150-218 (230)
91 KOG1615 Phosphoserine phosphat 99.5 3.5E-14 7.6E-19 103.9 8.5 195 6-215 13-222 (227)
92 PHA02530 pseT polynucleotide k 99.5 6.7E-14 1.5E-18 115.0 10.2 104 90-194 186-298 (300)
93 COG0241 HisB Histidinol phosph 99.5 2.7E-13 5.8E-18 100.5 12.3 123 90-215 30-173 (181)
94 TIGR01544 HAD-SF-IE haloacid d 99.5 2E-12 4.3E-17 102.7 16.2 95 89-184 119-230 (277)
95 TIGR01482 SPP-subfamily Sucros 99.5 2.9E-14 6.2E-19 112.3 5.4 100 110-213 110-210 (225)
96 smart00577 CPDc catalytic doma 99.5 6.7E-14 1.5E-18 102.6 6.5 96 89-189 43-139 (148)
97 TIGR01686 FkbH FkbH-like domai 99.5 1.1E-13 2.3E-18 114.4 8.2 90 92-187 32-125 (320)
98 TIGR01545 YfhB_g-proteo haloac 99.5 4.1E-12 8.8E-17 98.5 16.3 100 89-190 92-200 (210)
99 TIGR01456 CECR5 HAD-superfamil 99.5 2.8E-12 6.1E-17 105.9 15.1 74 145-218 230-320 (321)
100 TIGR01460 HAD-SF-IIA Haloacid 99.5 4.1E-13 8.8E-18 106.2 9.3 49 145-193 185-235 (236)
101 TIGR01487 SPP-like sucrose-pho 99.4 5.3E-14 1.1E-18 110.0 3.9 98 110-212 110-207 (215)
102 PF13242 Hydrolase_like: HAD-h 99.4 2.5E-13 5.3E-18 87.6 6.1 69 146-214 2-75 (75)
103 TIGR02244 HAD-IG-Ncltidse HAD 99.4 2.8E-11 6.1E-16 99.2 18.7 103 90-193 183-324 (343)
104 PF12689 Acid_PPase: Acid Phos 99.4 1.6E-12 3.4E-17 96.0 9.5 101 88-194 42-153 (169)
105 TIGR01663 PNK-3'Pase polynucle 99.4 8.6E-13 1.9E-17 114.1 9.1 92 92-186 198-305 (526)
106 COG1778 Low specificity phosph 99.4 3.4E-13 7.3E-18 95.5 4.7 98 99-209 43-140 (170)
107 COG0561 Cof Predicted hydrolas 99.4 2.6E-13 5.7E-18 109.4 4.6 68 143-213 183-250 (264)
108 PRK15126 thiamin pyrimidine py 99.4 2.2E-13 4.8E-18 110.3 3.8 69 142-213 181-251 (272)
109 PRK00192 mannosyl-3-phosphogly 99.4 1.9E-11 4.2E-16 99.0 13.6 49 144-193 186-235 (273)
110 PRK10513 sugar phosphate phosp 99.3 9.4E-13 2E-17 106.5 4.5 69 142-213 189-257 (270)
111 PRK10976 putative hydrolase; P 99.3 1.4E-11 3E-16 99.5 10.2 69 142-213 183-253 (266)
112 PF12710 HAD: haloacid dehalog 99.3 1.6E-11 3.4E-16 94.2 9.4 85 94-182 92-192 (192)
113 PLN02887 hydrolase family prot 99.3 3.5E-12 7.6E-17 111.8 6.0 69 142-213 500-568 (580)
114 PTZ00445 p36-lilke protein; Pr 99.3 7.5E-11 1.6E-15 88.8 11.0 135 58-193 33-206 (219)
115 KOG3040 Predicted sugar phosph 99.2 1.4E-11 3E-16 91.4 5.9 76 144-219 177-257 (262)
116 TIGR01533 lipo_e_P4 5'-nucleot 99.2 2E-10 4.3E-15 91.4 12.8 85 89-181 116-204 (266)
117 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 5E-11 1.1E-15 94.8 8.8 90 91-186 24-116 (242)
118 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 1.8E-11 3.9E-16 97.3 5.4 98 93-192 140-241 (242)
119 PRK03669 mannosyl-3-phosphogly 99.2 5.3E-11 1.1E-15 96.3 7.8 52 142-193 180-234 (271)
120 TIGR00099 Cof-subfamily Cof su 99.2 2.2E-11 4.7E-16 97.8 5.2 68 143-213 182-249 (256)
121 PF09419 PGP_phosphatase: Mito 99.2 4.6E-10 9.9E-15 82.7 10.6 89 95-194 63-166 (168)
122 PF08645 PNK3P: Polynucleotide 99.2 3.5E-10 7.7E-15 83.6 9.7 95 92-189 30-153 (159)
123 TIGR02463 MPGP_rel mannosyl-3- 99.1 7.6E-10 1.7E-14 86.9 12.0 45 145-189 175-219 (221)
124 TIGR02471 sucr_syn_bact_C sucr 99.1 2.3E-10 5.1E-15 90.7 9.0 61 142-205 152-212 (236)
125 KOG2882 p-Nitrophenyl phosphat 99.1 3.7E-10 8E-15 89.0 9.5 76 143-218 219-303 (306)
126 KOG3120 Predicted haloacid deh 99.1 7.6E-10 1.7E-14 83.1 10.5 173 8-194 12-212 (256)
127 PF06941 NT5C: 5' nucleotidase 99.1 1.9E-10 4.1E-15 88.1 7.1 173 10-219 2-186 (191)
128 PF08282 Hydrolase_3: haloacid 99.1 2.1E-11 4.5E-16 97.4 -0.0 66 145-213 182-247 (254)
129 COG4359 Uncharacterized conser 99.1 7.2E-09 1.6E-13 75.6 12.6 188 11-221 5-214 (220)
130 TIGR01684 viral_ppase viral ph 99.1 1E-09 2.2E-14 87.2 8.8 60 93-153 148-207 (301)
131 TIGR01525 ATPase-IB_hvy heavy 99.0 6.3E-10 1.4E-14 98.8 7.2 115 89-218 382-499 (556)
132 TIGR01485 SPP_plant-cyano sucr 99.0 9.3E-09 2E-13 82.2 13.0 52 142-193 160-211 (249)
133 TIGR01512 ATPase-IB2_Cd heavy 99.0 7.2E-10 1.6E-14 97.9 7.2 115 89-218 360-478 (536)
134 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 4.3E-10 9.3E-15 90.3 5.2 68 143-210 170-242 (256)
135 TIGR02251 HIF-SF_euk Dullard-l 99.0 3.7E-10 8E-15 83.9 2.9 100 89-193 40-140 (162)
136 KOG2630 Enolase-phosphatase E- 98.9 2.3E-07 4.9E-12 70.4 14.9 124 89-215 121-249 (254)
137 TIGR02461 osmo_MPG_phos mannos 98.9 3.3E-09 7.1E-14 83.3 5.0 43 147-189 179-223 (225)
138 TIGR01511 ATPase-IB1_Cu copper 98.8 5.7E-09 1.2E-13 92.6 6.8 114 89-218 403-518 (562)
139 PLN02382 probable sucrose-phos 98.8 5.1E-08 1.1E-12 83.2 11.2 51 143-193 169-223 (413)
140 PRK10187 trehalose-6-phosphate 98.8 2.9E-08 6.3E-13 79.9 9.2 71 145-222 170-244 (266)
141 PHA03398 viral phosphatase sup 98.8 7E-08 1.5E-12 77.0 9.8 82 93-175 150-262 (303)
142 TIGR01484 HAD-SF-IIB HAD-super 98.8 2.3E-08 5.1E-13 77.4 7.0 47 143-189 157-203 (204)
143 PF05761 5_nucleotid: 5' nucle 98.8 8.4E-07 1.8E-11 75.8 16.7 104 90-193 182-325 (448)
144 PRK10671 copA copper exporting 98.7 2.2E-08 4.9E-13 93.0 7.5 114 90-218 649-764 (834)
145 COG4087 Soluble P-type ATPase 98.7 7.6E-08 1.6E-12 66.3 8.0 122 89-221 28-149 (152)
146 TIGR01522 ATPase-IIA2_Ca golgi 98.7 2.8E-08 6.1E-13 92.7 7.4 124 91-218 528-670 (884)
147 PRK14502 bifunctional mannosyl 98.7 1.5E-06 3.2E-11 77.1 15.6 47 147-193 611-659 (694)
148 COG4996 Predicted phosphatase 98.6 1.8E-07 3.9E-12 64.5 6.7 90 88-182 38-133 (164)
149 TIGR02250 FCP1_euk FCP1-like p 98.6 1.5E-07 3.3E-12 69.3 6.9 82 89-177 56-139 (156)
150 smart00775 LNS2 LNS2 domain. T 98.6 8.1E-07 1.8E-11 65.6 10.6 92 93-187 29-141 (157)
151 PF03767 Acid_phosphat_B: HAD 98.6 1.2E-07 2.6E-12 74.4 6.1 91 90-183 114-210 (229)
152 PF05116 S6PP: Sucrose-6F-phos 98.6 4.1E-07 8.9E-12 72.5 8.9 49 144-193 160-208 (247)
153 PLN02177 glycerol-3-phosphate 98.6 4.4E-06 9.6E-11 72.7 15.7 95 92-191 111-214 (497)
154 TIGR01675 plant-AP plant acid 98.6 2.9E-06 6.2E-11 66.0 13.0 96 89-190 118-220 (229)
155 PTZ00174 phosphomannomutase; P 98.5 1.4E-08 3.1E-13 80.9 0.2 48 142-193 181-232 (247)
156 PRK12702 mannosyl-3-phosphogly 98.5 1.1E-06 2.5E-11 70.2 10.3 45 147-191 206-252 (302)
157 PRK11033 zntA zinc/cadmium/mer 98.5 6.2E-07 1.3E-11 82.2 8.6 111 90-217 567-679 (741)
158 PF11019 DUF2608: Protein of u 98.4 1.8E-05 3.9E-10 63.0 14.4 104 90-193 80-210 (252)
159 TIGR01680 Veg_Stor_Prot vegeta 98.4 1.2E-05 2.6E-10 63.7 12.5 91 88-182 142-239 (275)
160 TIGR01116 ATPase-IIA1_Ca sarco 98.4 7.8E-07 1.7E-11 83.5 6.6 124 91-218 537-682 (917)
161 COG3700 AphA Acid phosphatase 98.3 4.3E-06 9.4E-11 61.0 8.6 95 92-193 115-212 (237)
162 COG2503 Predicted secreted aci 98.3 4.2E-06 9.2E-11 64.2 8.9 89 89-184 120-212 (274)
163 COG5663 Uncharacterized conser 98.3 9.7E-06 2.1E-10 58.6 9.3 97 88-198 69-167 (194)
164 PRK14501 putative bifunctional 98.3 1.7E-06 3.8E-11 79.4 6.8 69 145-219 653-721 (726)
165 TIGR01497 kdpB K+-transporting 98.3 2.6E-06 5.6E-11 76.5 7.6 89 91-191 446-534 (675)
166 PLN02423 phosphomannomutase 98.2 1.7E-07 3.8E-12 74.5 -0.5 47 142-193 182-232 (245)
167 PF03031 NIF: NLI interacting 98.2 3.3E-07 7.1E-12 68.1 0.9 86 89-179 34-120 (159)
168 KOG0207 Cation transport ATPas 98.2 4.6E-05 1E-09 69.0 14.1 90 90-191 722-811 (951)
169 PRK14010 potassium-transportin 98.2 8.3E-06 1.8E-10 73.4 8.9 103 91-208 441-543 (673)
170 PRK01122 potassium-transportin 98.2 6E-06 1.3E-10 74.4 8.0 103 91-208 445-547 (679)
171 PLN02645 phosphoglycolate phos 98.1 4.7E-05 1E-09 62.9 11.1 90 91-190 44-136 (311)
172 COG2217 ZntA Cation transport 98.1 1.3E-05 2.9E-10 72.4 8.1 91 90-192 536-626 (713)
173 TIGR01517 ATPase-IIB_Ca plasma 98.0 1.5E-05 3.2E-10 75.3 7.6 122 91-215 579-718 (941)
174 PLN02205 alpha,alpha-trehalose 98.0 1.9E-05 4.1E-10 73.2 7.9 75 145-225 758-848 (854)
175 TIGR01647 ATPase-IIIA_H plasma 98.0 1.3E-05 2.8E-10 73.9 6.8 97 91-191 442-560 (755)
176 TIGR01524 ATPase-IIIB_Mg magne 98.0 2E-05 4.4E-10 73.7 7.7 112 91-208 515-642 (867)
177 PRK10517 magnesium-transportin 98.0 1.7E-05 3.8E-10 74.2 7.1 112 91-208 550-677 (902)
178 PRK15122 magnesium-transportin 97.9 2.6E-05 5.7E-10 73.1 7.2 120 91-216 550-687 (903)
179 TIGR01523 ATPase-IID_K-Na pota 97.9 3.8E-05 8.2E-10 73.1 8.1 118 90-210 645-788 (1053)
180 PLN02580 trehalose-phosphatase 97.8 5.6E-05 1.2E-09 63.4 6.6 70 147-221 299-376 (384)
181 COG0474 MgtA Cation transport 97.8 0.00011 2.3E-09 69.2 8.8 104 89-193 545-666 (917)
182 TIGR00685 T6PP trehalose-phosp 97.8 2.1E-05 4.6E-10 62.7 3.4 69 147-219 165-240 (244)
183 PF13344 Hydrolase_6: Haloacid 97.7 0.00026 5.6E-09 48.1 7.7 86 89-186 12-100 (101)
184 TIGR01106 ATPase-IIC_X-K sodiu 97.7 0.00011 2.4E-09 69.9 7.8 123 91-216 568-734 (997)
185 TIGR01689 EcbF-BcbF capsule bi 97.6 0.00045 9.7E-09 48.7 7.8 30 91-120 24-53 (126)
186 TIGR02245 HAD_IIID1 HAD-superf 97.6 0.00044 9.5E-09 52.7 7.9 90 91-186 45-150 (195)
187 KOG0202 Ca2+ transporting ATPa 97.6 0.00024 5.2E-09 64.0 7.0 103 90-193 583-705 (972)
188 TIGR01652 ATPase-Plipid phosph 97.5 0.00021 4.5E-09 68.6 6.7 127 89-218 629-819 (1057)
189 PF05152 DUF705: Protein of un 97.5 0.00068 1.5E-08 53.8 8.0 49 93-142 144-192 (297)
190 PF08235 LNS2: LNS2 (Lipin/Ned 97.4 0.0017 3.7E-08 47.4 8.8 93 92-187 28-141 (157)
191 KOG2470 Similar to IMP-GMP spe 97.4 0.0059 1.3E-07 49.8 12.4 103 90-193 239-376 (510)
192 TIGR01494 ATPase_P-type ATPase 97.4 0.00097 2.1E-08 58.9 8.9 86 90-190 346-431 (499)
193 TIGR01657 P-ATPase-V P-type AT 97.4 0.0013 2.8E-08 63.2 10.2 42 90-132 655-696 (1054)
194 COG5610 Predicted hydrolase (H 97.4 0.00067 1.4E-08 57.1 7.1 98 93-191 101-201 (635)
195 COG4030 Uncharacterized protei 97.3 0.01 2.2E-07 45.6 11.8 40 90-131 82-121 (315)
196 COG3882 FkbH Predicted enzyme 97.3 0.0023 5.1E-08 54.4 9.1 86 95-186 259-348 (574)
197 PLN02499 glycerol-3-phosphate 97.2 0.007 1.5E-07 52.3 11.9 89 99-193 101-198 (498)
198 TIGR01452 PGP_euk phosphoglyco 97.2 0.0044 9.5E-08 50.4 10.0 88 91-189 18-108 (279)
199 PLN03190 aminophospholipid tra 97.2 0.00039 8.5E-09 66.9 4.2 52 166-219 872-923 (1178)
200 PLN03017 trehalose-phosphatase 97.2 0.0012 2.5E-08 55.2 6.3 72 148-223 282-360 (366)
201 COG0647 NagD Predicted sugar p 97.1 0.0067 1.5E-07 48.6 9.6 87 89-186 22-111 (269)
202 COG4502 5'(3')-deoxyribonucleo 96.8 0.0015 3.4E-08 46.0 3.1 85 87-194 64-153 (180)
203 PF13344 Hydrolase_6: Haloacid 96.5 0.0027 5.7E-08 43.2 2.9 17 12-28 1-17 (101)
204 COG2216 KdpB High-affinity K+ 96.5 0.0065 1.4E-07 52.3 5.7 90 91-192 447-536 (681)
205 COG3769 Predicted hydrolase (H 96.4 0.042 9.2E-07 42.2 9.2 92 94-190 137-234 (274)
206 KOG3128 Uncharacterized conser 96.4 0.0096 2.1E-07 46.5 5.8 96 89-185 136-248 (298)
207 TIGR01658 EYA-cons_domain eyes 96.4 0.022 4.7E-07 44.4 7.6 79 110-193 178-258 (274)
208 PF05822 UMPH-1: Pyrimidine 5' 96.3 0.011 2.4E-07 46.5 5.8 94 89-184 88-198 (246)
209 KOG0206 P-type ATPase [General 96.2 0.056 1.2E-06 51.7 10.8 35 89-123 649-683 (1151)
210 PF06189 5-nucleotidase: 5'-nu 96.1 0.07 1.5E-06 42.2 9.4 73 107-194 186-260 (264)
211 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.1 0.073 1.6E-06 42.5 9.9 50 91-141 17-69 (249)
212 KOG2961 Predicted hydrolase (H 96.1 0.064 1.4E-06 38.6 8.2 98 90-195 60-170 (190)
213 KOG3107 Predicted haloacid deh 96.0 0.22 4.8E-06 41.4 12.0 80 108-193 371-452 (468)
214 PRK10444 UMP phosphatase; Prov 95.5 0.16 3.4E-06 40.6 9.4 50 91-141 17-69 (248)
215 KOG0210 P-type ATPase [Inorgan 95.5 0.078 1.7E-06 47.6 8.0 125 89-219 656-833 (1051)
216 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.2 0.097 2.1E-06 42.0 7.4 49 92-141 22-73 (257)
217 COG1877 OtsB Trehalose-6-phosp 94.9 0.21 4.5E-06 40.2 8.2 47 147-193 180-229 (266)
218 TIGR01460 HAD-SF-IIA Haloacid 94.5 0.54 1.2E-05 37.2 9.8 87 90-187 13-102 (236)
219 PLN02151 trehalose-phosphatase 94.0 0.11 2.4E-06 43.4 5.0 69 150-222 270-345 (354)
220 KOG0204 Calcium transporting A 93.7 0.23 5E-06 45.7 6.8 100 90-193 646-766 (1034)
221 KOG2116 Protein involved in pl 92.6 0.76 1.6E-05 41.2 8.0 92 95-187 562-672 (738)
222 KOG2882 p-Nitrophenyl phosphat 92.5 2.4 5.3E-05 34.4 10.2 96 88-193 35-133 (306)
223 TIGR01456 CECR5 HAD-superfamil 91.0 1.2 2.7E-05 37.0 7.5 88 90-190 15-109 (321)
224 KOG1618 Predicted phosphatase 90.7 0.76 1.6E-05 37.6 5.6 63 11-73 37-103 (389)
225 KOG0209 P-type ATPase [Inorgan 90.6 0.93 2E-05 42.0 6.7 36 90-125 674-709 (1160)
226 cd04728 ThiG Thiazole synthase 90.3 6.2 0.00014 31.3 10.2 95 91-194 104-206 (248)
227 PRK00192 mannosyl-3-phosphogly 89.8 0.67 1.5E-05 37.5 4.9 40 94-134 24-63 (273)
228 PRK10513 sugar phosphate phosp 89.7 1 2.2E-05 36.3 5.9 38 94-132 23-60 (270)
229 TIGR01668 YqeG_hyp_ppase HAD s 89.5 0.93 2E-05 33.9 5.1 17 7-23 23-39 (170)
230 TIGR02468 sucrsPsyn_pln sucros 89.5 5.4 0.00012 38.6 11.0 72 119-193 924-1002(1050)
231 KOG2469 IMP-GMP specific 5'-nu 89.5 0.8 1.7E-05 38.7 5.0 100 94-193 201-334 (424)
232 TIGR02461 osmo_MPG_phos mannos 89.1 0.93 2E-05 35.6 5.1 39 94-133 18-56 (225)
233 PRK00994 F420-dependent methyl 88.7 8.6 0.00019 30.2 9.7 88 100-193 23-117 (277)
234 PF05690 ThiG: Thiazole biosyn 88.6 7.8 0.00017 30.5 9.5 95 91-193 104-205 (247)
235 PRK11840 bifunctional sulfur c 88.5 7.3 0.00016 32.3 9.8 96 90-194 177-280 (326)
236 TIGR01487 SPP-like sucrose-pho 88.4 0.9 1.9E-05 35.3 4.6 40 92-132 19-58 (215)
237 KOG3040 Predicted sugar phosph 88.2 3 6.4E-05 32.1 6.9 48 92-140 24-74 (262)
238 TIGR02463 MPGP_rel mannosyl-3- 88.0 1.1 2.4E-05 34.9 4.9 36 96-132 21-56 (221)
239 PRK00208 thiG thiazole synthas 87.9 12 0.00025 29.8 10.2 95 91-194 104-206 (250)
240 PRK01158 phosphoglycolate phos 87.8 1.1 2.3E-05 35.1 4.7 40 93-133 22-61 (230)
241 PRK15126 thiamin pyrimidine py 86.9 1.3 2.7E-05 35.8 4.7 40 93-133 21-60 (272)
242 CHL00162 thiG thiamin biosynth 86.9 13 0.00028 29.7 9.9 95 91-194 118-220 (267)
243 TIGR00099 Cof-subfamily Cof su 86.7 1.5 3.2E-05 35.1 5.0 39 93-132 18-56 (256)
244 PTZ00445 p36-lilke protein; Pr 86.2 1.5 3.3E-05 33.9 4.4 16 7-22 41-56 (219)
245 PRK10976 putative hydrolase; P 86.0 1.5 3.2E-05 35.3 4.7 40 93-133 21-60 (266)
246 TIGR00685 T6PP trehalose-phosp 85.9 0.43 9.3E-06 38.0 1.5 15 9-23 3-17 (244)
247 KOG0323 TFIIF-interacting CTD 85.8 2.7 5.9E-05 38.1 6.4 78 89-176 199-281 (635)
248 PLN03064 alpha,alpha-trehalose 85.7 1.7 3.7E-05 41.4 5.4 36 90-125 621-657 (934)
249 PRK10530 pyridoxal phosphate ( 85.4 1.8 3.8E-05 34.9 4.9 40 93-133 22-61 (272)
250 KOG4549 Magnesium-dependent ph 85.3 6.3 0.00014 27.7 6.6 86 89-176 42-133 (144)
251 TIGR01482 SPP-subfamily Sucros 85.3 1.7 3.7E-05 33.8 4.6 39 93-132 17-55 (225)
252 PLN02151 trehalose-phosphatase 85.1 0.47 1E-05 39.8 1.4 13 9-21 98-110 (354)
253 TIGR01486 HAD-SF-IIB-MPGP mann 84.7 2.2 4.7E-05 34.1 5.1 37 95-132 20-56 (256)
254 PRK12702 mannosyl-3-phosphogly 84.7 2.2 4.8E-05 34.8 5.0 40 93-133 20-59 (302)
255 PF08282 Hydrolase_3: haloacid 83.7 2.2 4.7E-05 33.5 4.6 40 92-132 16-55 (254)
256 PF02358 Trehalose_PPase: Treh 83.5 1.9 4.1E-05 34.0 4.2 64 146-210 162-233 (235)
257 PRK05627 bifunctional riboflav 83.4 0.44 9.5E-06 39.3 0.5 24 235-259 184-207 (305)
258 KOG0203 Na+/K+ ATPase, alpha s 83.1 0.2 4.4E-06 46.0 -1.6 102 91-193 590-733 (1019)
259 COG2022 ThiG Uncharacterized e 83.0 21 0.00046 28.1 9.4 95 90-193 110-212 (262)
260 COG0561 Cof Predicted hydrolas 82.9 2.4 5.3E-05 34.0 4.7 41 92-133 21-61 (264)
261 PF06014 DUF910: Bacterial pro 82.8 0.96 2.1E-05 27.3 1.7 25 154-182 7-31 (62)
262 PRK03669 mannosyl-3-phosphogly 82.1 2.7 5.9E-05 33.9 4.7 38 94-132 27-64 (271)
263 KOG3189 Phosphomannomutase [Li 81.1 1.2 2.7E-05 33.8 2.1 27 11-37 13-39 (252)
264 PF04413 Glycos_transf_N: 3-De 77.9 8.8 0.00019 29.2 6.0 96 70-178 81-184 (186)
265 smart00577 CPDc catalytic doma 77.9 1.4 3.1E-05 32.0 1.6 15 10-24 3-17 (148)
266 COG5083 SMP2 Uncharacterized p 77.8 1.4 3.1E-05 37.6 1.8 29 159-187 487-516 (580)
267 TIGR02251 HIF-SF_euk Dullard-l 77.4 1.4 3.1E-05 32.6 1.5 14 10-23 2-15 (162)
268 COG0731 Fe-S oxidoreductases [ 77.1 5.1 0.00011 32.8 4.6 37 89-125 90-127 (296)
269 TIGR01484 HAD-SF-IIB HAD-super 76.5 4.5 9.8E-05 30.9 4.2 33 93-125 19-51 (204)
270 PF13580 SIS_2: SIS domain; PD 75.7 26 0.00057 25.0 9.3 100 93-192 21-137 (138)
271 COG4850 Uncharacterized conser 74.5 23 0.00049 29.4 7.6 85 89-180 194-293 (373)
272 KOG2832 TFIIF-interacting CTD 74.3 12 0.00027 31.4 6.2 82 90-176 213-294 (393)
273 KOG0205 Plasma membrane H+-tra 74.1 6.3 0.00014 35.8 4.7 101 91-192 492-611 (942)
274 TIGR02329 propionate_PrpR prop 73.1 30 0.00065 31.1 8.9 88 95-194 85-172 (526)
275 PHA02530 pseT polynucleotide k 72.3 19 0.00041 29.4 7.1 15 9-23 158-172 (300)
276 PF02358 Trehalose_PPase: Treh 72.2 2.5 5.5E-05 33.3 1.8 11 13-23 1-11 (235)
277 COG0196 RibF FAD synthase [Coe 71.8 1.7 3.8E-05 35.7 0.8 24 235-259 184-207 (304)
278 TIGR00083 ribF riboflavin kina 70.7 1.7 3.7E-05 35.5 0.6 24 235-259 167-190 (288)
279 COG4483 Uncharacterized protei 70.5 6.3 0.00014 23.9 2.7 26 154-183 7-32 (68)
280 PF01993 MTD: methylene-5,6,7, 70.3 20 0.00043 28.3 6.1 82 106-193 29-116 (276)
281 KOG2134 Polynucleotide kinase 69.8 19 0.00041 30.6 6.3 96 91-189 104-230 (422)
282 TIGR01485 SPP_plant-cyano sucr 68.1 12 0.00027 29.6 5.0 37 95-132 25-61 (249)
283 PF06506 PrpR_N: Propionate ca 67.8 9.8 0.00021 28.5 4.1 88 92-194 59-152 (176)
284 PTZ00174 phosphomannomutase; P 67.5 9.6 0.00021 30.3 4.2 33 93-125 24-56 (247)
285 PRK15424 propionate catabolism 65.6 50 0.0011 29.8 8.6 87 95-193 95-181 (538)
286 KOG1618 Predicted phosphatase 62.9 32 0.0007 28.5 6.2 89 89-190 49-144 (389)
287 PF04123 DUF373: Domain of unk 62.3 33 0.00072 28.9 6.5 63 95-182 52-116 (344)
288 PLN02887 hydrolase family prot 61.9 14 0.00031 33.5 4.6 41 91-132 325-365 (580)
289 KOG2134 Polynucleotide kinase 60.7 5 0.00011 33.9 1.4 17 8-24 74-90 (422)
290 PF03332 PMM: Eukaryotic phosp 60.3 15 0.00033 28.6 3.9 45 96-142 1-45 (220)
291 TIGR00236 wecB UDP-N-acetylglu 60.2 69 0.0015 26.9 8.4 95 96-193 16-118 (365)
292 PF04413 Glycos_transf_N: 3-De 59.6 75 0.0016 24.1 7.8 87 95-193 36-126 (186)
293 PRK14502 bifunctional mannosyl 59.6 19 0.0004 33.3 4.9 40 92-132 434-473 (694)
294 KOG1605 TFIIF-interacting CTD 57.0 1.9 4.2E-05 34.5 -1.4 93 90-187 130-223 (262)
295 PLN02588 glycerol-3-phosphate 56.3 5.6 0.00012 35.1 1.1 35 98-133 137-171 (525)
296 KOG0780 Signal recognition par 56.1 1.2E+02 0.0026 26.2 8.6 58 135-193 184-249 (483)
297 PF14336 DUF4392: Domain of un 56.1 73 0.0016 26.2 7.4 28 93-120 62-89 (291)
298 KOG2469 IMP-GMP specific 5'-nu 54.4 16 0.00035 31.2 3.4 18 6-23 24-41 (424)
299 KOG1605 TFIIF-interacting CTD 54.4 7.5 0.00016 31.3 1.4 17 8-24 88-104 (262)
300 TIGR02471 sucr_syn_bact_C sucr 52.9 35 0.00075 26.8 5.1 32 99-132 23-54 (236)
301 PRK13762 tRNA-modifying enzyme 52.6 26 0.00057 29.2 4.5 31 89-119 140-170 (322)
302 TIGR00288 conserved hypothetic 52.1 95 0.0021 23.0 6.9 29 11-39 26-54 (160)
303 KOG0208 Cation transport ATPas 48.5 65 0.0014 31.2 6.5 42 89-131 703-744 (1140)
304 COG3769 Predicted hydrolase (H 48.5 33 0.00071 26.9 3.9 36 96-132 28-63 (274)
305 PRK14021 bifunctional shikimat 47.6 2.2E+02 0.0047 25.8 10.0 95 94-193 195-303 (542)
306 PLN03063 alpha,alpha-trehalose 47.3 11 0.00023 35.8 1.5 15 7-21 505-519 (797)
307 PLN02591 tryptophan synthase 46.3 1.5E+02 0.0033 23.7 9.3 98 92-193 116-219 (250)
308 cd06539 CIDE_N_A CIDE_N domain 46.0 20 0.00043 22.9 2.1 19 9-27 40-58 (78)
309 cd06537 CIDE_N_B CIDE_N domain 45.9 20 0.00043 23.1 2.1 19 9-27 39-57 (81)
310 smart00266 CAD Domains present 45.8 20 0.00043 22.7 2.0 19 9-27 38-56 (74)
311 PF02350 Epimerase_2: UDP-N-ac 45.4 37 0.00079 28.7 4.3 89 102-194 2-100 (346)
312 COG5190 FCP1 TFIIF-interacting 45.0 60 0.0013 27.9 5.4 82 90-176 251-332 (390)
313 PF14213 DUF4325: Domain of un 44.3 52 0.0011 20.5 3.9 31 9-39 17-47 (74)
314 TIGR00262 trpA tryptophan synt 44.2 1.7E+02 0.0036 23.6 9.2 95 91-193 124-228 (256)
315 PLN02580 trehalose-phosphatase 44.0 41 0.00089 28.9 4.3 35 90-125 140-174 (384)
316 TIGR02370 pyl_corrinoid methyl 43.4 1.5E+02 0.0032 22.7 8.8 91 96-191 101-192 (197)
317 COG0859 RfaF ADP-heptose:LPS h 42.3 2E+02 0.0044 24.0 9.1 84 94-193 195-278 (334)
318 cd01615 CIDE_N CIDE_N domain, 42.0 24 0.00053 22.5 2.0 19 9-27 40-58 (78)
319 PF04007 DUF354: Protein of un 41.8 87 0.0019 26.4 5.9 88 96-194 16-112 (335)
320 TIGR02826 RNR_activ_nrdG3 anae 41.1 50 0.0011 24.0 3.9 28 93-120 74-101 (147)
321 smart00540 LEM in nuclear memb 40.9 33 0.00072 19.2 2.3 29 97-125 9-37 (44)
322 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.8 41 0.00089 23.2 3.4 31 91-121 57-87 (126)
323 cd06536 CIDE_N_ICAD CIDE_N dom 40.6 26 0.00057 22.5 2.0 18 10-27 43-60 (80)
324 TIGR03278 methan_mark_10 putat 40.0 1.9E+02 0.004 25.2 7.7 54 64-117 48-113 (404)
325 PF14314 Methyltrans_Mon: Viru 39.2 77 0.0017 29.4 5.5 29 154-182 312-340 (675)
326 PRK13125 trpA tryptophan synth 38.8 2E+02 0.0043 22.8 9.4 94 94-193 116-215 (244)
327 TIGR01101 V_ATP_synt_F vacuola 38.8 1.2E+02 0.0026 21.1 5.2 64 94-160 46-111 (115)
328 cd05014 SIS_Kpsf KpsF-like pro 38.6 39 0.00084 23.4 3.0 33 90-122 57-89 (128)
329 COG1877 OtsB Trehalose-6-phosp 38.5 60 0.0013 26.3 4.3 36 90-125 39-75 (266)
330 TIGR03365 Bsubt_queE 7-cyano-7 37.8 35 0.00075 27.1 2.9 30 90-119 83-112 (238)
331 TIGR00715 precor6x_red precorr 37.8 2.2E+02 0.0047 23.0 7.6 60 152-219 187-252 (256)
332 COG0761 lytB 4-Hydroxy-3-methy 37.7 2E+02 0.0044 23.6 7.0 46 149-198 225-270 (294)
333 COG1208 GCD1 Nucleoside-diphos 37.6 2.2E+02 0.0048 24.2 7.8 79 94-177 33-112 (358)
334 cd06538 CIDE_N_FSP27 CIDE_N do 37.4 32 0.00069 22.1 2.0 18 10-27 40-57 (79)
335 COG1834 N-Dimethylarginine dim 37.2 1.2E+02 0.0026 24.6 5.7 87 97-184 41-147 (267)
336 COG2241 CobL Precorrin-6B meth 37.2 1.4E+02 0.0031 23.2 6.0 76 107-193 68-148 (210)
337 TIGR02495 NrdG2 anaerobic ribo 36.9 86 0.0019 23.5 4.9 31 89-119 72-102 (191)
338 PLN03017 trehalose-phosphatase 36.9 57 0.0012 27.8 4.1 34 91-125 133-166 (366)
339 PF10307 DUF2410: Hypothetical 36.8 2E+02 0.0043 22.2 8.5 75 106-184 70-152 (197)
340 PRK08304 stage V sporulation p 36.8 1E+02 0.0022 25.9 5.4 67 127-193 30-109 (337)
341 PRK10422 lipopolysaccharide co 36.5 2.6E+02 0.0056 23.5 9.8 84 95-193 203-289 (352)
342 PRK03692 putative UDP-N-acetyl 36.4 2E+02 0.0044 22.9 6.9 81 96-182 94-176 (243)
343 cd01445 TST_Repeats Thiosulfat 36.0 1.5E+02 0.0034 21.0 5.8 46 146-191 75-128 (138)
344 COG1058 CinA Predicted nucleot 35.2 45 0.00097 26.8 3.1 47 148-194 20-69 (255)
345 cd05710 SIS_1 A subgroup of th 35.1 56 0.0012 22.5 3.3 32 90-121 57-88 (120)
346 COG2099 CobK Precorrin-6x redu 34.8 2.4E+02 0.0053 22.7 7.1 97 92-194 113-231 (257)
347 COG0381 WecB UDP-N-acetylgluco 34.8 1.7E+02 0.0037 25.2 6.5 91 97-194 20-125 (383)
348 PF03603 DNA_III_psi: DNA poly 34.7 1.2E+02 0.0026 21.5 4.9 84 101-192 7-90 (128)
349 PRK10076 pyruvate formate lyas 34.5 1.8E+02 0.0038 22.7 6.3 31 89-119 48-79 (213)
350 PRK15317 alkyl hydroperoxide r 34.5 3.4E+02 0.0074 24.3 9.7 29 165-193 211-242 (517)
351 TIGR02201 heptsyl_trn_III lipo 34.0 2.8E+02 0.006 23.1 9.7 84 95-193 201-287 (344)
352 PF03808 Glyco_tran_WecB: Glyc 34.0 2E+02 0.0043 21.4 7.4 74 95-175 36-111 (172)
353 PF01380 SIS: SIS domain SIS d 33.5 64 0.0014 22.2 3.5 32 91-122 64-95 (131)
354 TIGR01858 tag_bisphos_ald clas 33.3 2.7E+02 0.0059 22.8 8.7 95 96-194 4-104 (282)
355 TIGR02195 heptsyl_trn_II lipop 32.6 2.9E+02 0.0062 22.9 9.4 84 95-193 195-278 (334)
356 PF02698 DUF218: DUF218 domain 32.5 1.8E+02 0.0038 20.9 5.8 30 147-176 52-81 (155)
357 cd02071 MM_CoA_mut_B12_BD meth 32.0 1.1E+02 0.0024 21.2 4.4 19 98-116 41-59 (122)
358 PF08444 Gly_acyl_tr_C: Aralky 32.0 1.1E+02 0.0024 20.2 3.9 34 97-131 42-75 (89)
359 PRK10916 ADP-heptose:LPS hepto 31.9 3E+02 0.0066 23.0 9.7 87 95-193 201-288 (348)
360 PF08484 Methyltransf_14: C-me 31.9 2.1E+02 0.0046 21.1 8.1 47 94-143 55-102 (160)
361 cd00733 GlyRS_alpha_core Class 31.4 62 0.0013 25.9 3.2 37 152-188 89-128 (279)
362 TIGR03140 AhpF alkyl hydropero 31.2 2.2E+02 0.0047 25.6 7.1 66 127-192 164-242 (515)
363 cd05013 SIS_RpiR RpiR-like pro 30.5 66 0.0014 22.3 3.1 29 93-121 73-101 (139)
364 PF09269 DUF1967: Domain of un 30.4 53 0.0011 20.3 2.2 20 154-173 45-64 (69)
365 TIGR00388 glyQ glycyl-tRNA syn 30.4 55 0.0012 26.3 2.8 37 152-188 90-129 (293)
366 cd02071 MM_CoA_mut_B12_BD meth 30.2 1.9E+02 0.0041 20.0 9.6 88 99-192 19-109 (122)
367 PF00578 AhpC-TSA: AhpC/TSA fa 29.8 95 0.0021 21.0 3.8 35 95-130 47-81 (124)
368 PLN02423 phosphomannomutase 29.5 89 0.0019 24.8 4.0 32 93-125 26-57 (245)
369 PRK09348 glyQ glycyl-tRNA synt 29.5 69 0.0015 25.7 3.1 37 152-188 93-132 (283)
370 PRK02261 methylaspartate mutas 29.4 2.1E+02 0.0046 20.4 10.0 15 177-191 104-118 (137)
371 PRK06856 DNA polymerase III su 29.4 1.2E+02 0.0025 21.6 4.1 72 102-181 7-78 (128)
372 TIGR03127 RuMP_HxlB 6-phospho 29.3 74 0.0016 23.7 3.4 32 91-122 83-114 (179)
373 PRK08005 epimerase; Validated 29.2 2.8E+02 0.006 21.6 10.1 96 91-193 90-192 (210)
374 TIGR03595 Obg_CgtA_exten Obg f 29.1 82 0.0018 19.5 2.9 20 154-173 45-64 (69)
375 PF08260 Kinin: Insect kinin p 29.0 27 0.00059 11.8 0.4 6 222-227 2-7 (8)
376 COG3655 Predicted transcriptio 28.7 70 0.0015 20.2 2.5 24 152-175 46-69 (73)
377 PF13911 AhpC-TSA_2: AhpC/TSA 28.6 1.5E+02 0.0032 20.1 4.5 34 97-131 3-36 (115)
378 COG1911 RPL30 Ribosomal protei 28.3 1.9E+02 0.0041 19.4 5.1 39 87-125 15-53 (100)
379 TIGR02193 heptsyl_trn_I lipopo 27.7 3.4E+02 0.0074 22.2 8.8 81 95-193 199-281 (319)
380 KOG0541 Alkyl hydroperoxide re 27.7 1.8E+02 0.004 21.5 4.8 41 92-133 63-104 (171)
381 PF02017 CIDE-N: CIDE-N domain 27.7 46 0.00099 21.3 1.6 18 10-27 41-58 (78)
382 cd05017 SIS_PGI_PMI_1 The memb 27.4 78 0.0017 21.7 3.0 28 90-117 53-80 (119)
383 COG1922 WecG Teichoic acid bio 27.2 2.7E+02 0.0059 22.4 6.2 75 96-175 97-171 (253)
384 PF02571 CbiJ: Precorrin-6x re 27.2 3.3E+02 0.0071 21.8 8.4 119 90-218 112-247 (249)
385 PRK13352 thiamine biosynthesis 27.0 4.3E+02 0.0093 23.1 8.3 17 179-195 253-269 (431)
386 cd06533 Glyco_transf_WecG_TagA 26.7 2.7E+02 0.0058 20.7 6.4 24 96-119 35-58 (171)
387 cd04795 SIS SIS domain. SIS (S 26.6 77 0.0017 19.9 2.7 24 91-114 58-81 (87)
388 PLN02834 3-dehydroquinate synt 26.6 4.4E+02 0.0096 23.1 8.8 84 106-193 99-197 (433)
389 cd01516 FBPase_glpX Bacterial 26.4 1.9E+02 0.0041 23.9 5.2 86 92-186 162-247 (309)
390 COG0378 HypB Ni2+-binding GTPa 26.3 3.1E+02 0.0067 21.2 7.7 73 96-175 30-106 (202)
391 COG0019 LysA Diaminopimelate d 25.9 4.4E+02 0.0095 22.8 9.0 38 155-193 87-126 (394)
392 TIGR00190 thiC thiamine biosyn 25.7 3.3E+02 0.0072 23.6 6.7 18 179-196 250-267 (423)
393 PRK13717 conjugal transfer pro 25.5 30 0.00064 24.3 0.5 15 7-21 43-57 (128)
394 PF04358 DsrC: DsrC like prote 25.5 2.3E+02 0.005 19.4 6.2 36 10-45 7-42 (109)
395 COG2920 DsrC Dissimilatory sul 25.5 2.2E+02 0.0048 19.3 6.9 38 8-45 7-44 (111)
396 TIGR03151 enACPred_II putative 25.3 3.9E+02 0.0085 22.1 8.9 86 98-193 100-191 (307)
397 cd01766 Ufm1 Urm1-like ubiquit 25.2 1.9E+02 0.004 18.3 3.9 42 145-186 23-64 (82)
398 PHA03050 glutaredoxin; Provisi 25.1 2.3E+02 0.0049 19.3 8.9 83 97-185 3-93 (108)
399 cd01773 Faf1_like1_UBX Faf1 ik 25.0 78 0.0017 20.5 2.4 19 156-174 63-81 (82)
400 TIGR02845 spore_V_AD stage V s 25.0 3E+02 0.0066 23.1 6.3 67 127-193 24-103 (327)
401 COG1225 Bcp Peroxiredoxin [Pos 25.0 2.9E+02 0.0063 20.4 6.5 42 95-139 52-93 (157)
402 TIGR03568 NeuC_NnaA UDP-N-acet 25.0 3.9E+02 0.0084 22.7 7.3 32 163-194 92-126 (365)
403 PRK09479 glpX fructose 1,6-bis 24.9 1.9E+02 0.004 24.1 4.9 86 92-186 165-250 (319)
404 PRK13937 phosphoheptose isomer 24.8 97 0.0021 23.4 3.3 31 91-121 117-147 (188)
405 PRK05301 pyrroloquinoline quin 24.8 1.6E+02 0.0036 25.0 5.0 29 89-117 72-100 (378)
406 PF02593 dTMP_synthase: Thymid 24.6 1.4E+02 0.003 23.4 4.1 92 90-187 58-156 (217)
407 cd05006 SIS_GmhA Phosphoheptos 24.3 89 0.0019 23.2 3.0 31 90-120 111-141 (177)
408 PF08620 RPAP1_C: RPAP1-like, 24.3 30 0.00065 21.8 0.3 9 13-21 4-12 (73)
409 PF05240 APOBEC_C: APOBEC-like 24.2 80 0.0017 18.7 2.1 26 94-119 2-27 (55)
410 CHL00200 trpA tryptophan synth 24.0 3.9E+02 0.0085 21.6 9.0 98 92-193 129-232 (263)
411 PF00072 Response_reg: Respons 23.9 1.4E+02 0.003 19.5 3.7 39 94-133 56-96 (112)
412 COG1920 Predicted nucleotidylt 23.8 42 0.00091 25.6 1.1 69 168-253 138-208 (210)
413 COG1927 Mtd Coenzyme F420-depe 23.7 3.6E+02 0.0078 21.1 9.1 83 105-193 29-117 (277)
414 TIGR03572 WbuZ glycosyl amidat 23.7 3.6E+02 0.0077 21.0 7.9 43 148-193 183-228 (232)
415 cd05005 SIS_PHI Hexulose-6-pho 23.7 1E+02 0.0022 22.9 3.2 32 91-122 86-117 (179)
416 PF05116 S6PP: Sucrose-6F-phos 23.6 1.5E+02 0.0032 23.6 4.3 41 99-141 27-67 (247)
417 TIGR03470 HpnH hopanoid biosyn 23.2 97 0.0021 25.8 3.2 31 89-119 82-112 (318)
418 TIGR00441 gmhA phosphoheptose 23.1 93 0.002 22.6 2.8 32 90-121 89-120 (154)
419 COG0752 GlyQ Glycyl-tRNA synth 23.1 80 0.0017 25.1 2.5 45 147-192 85-136 (298)
420 PRK06100 DNA polymerase III su 23.1 2.2E+02 0.0048 20.3 4.6 87 101-193 7-94 (132)
421 PLN02334 ribulose-phosphate 3- 22.9 3.7E+02 0.0081 21.0 10.6 96 93-193 101-203 (229)
422 cd03789 GT1_LPS_heptosyltransf 22.5 4.1E+02 0.0088 21.3 9.4 87 93-193 139-225 (279)
423 PRK00994 F420-dependent methyl 22.4 1.6E+02 0.0034 23.5 3.9 41 90-131 70-110 (277)
424 PF09887 DUF2114: Uncharacteri 22.3 1.5E+02 0.0033 25.3 4.0 37 149-185 380-421 (448)
425 COG4065 Uncharacterized protei 22.2 1.4E+02 0.0031 24.8 3.8 38 148-185 409-450 (480)
426 TIGR02109 PQQ_syn_pqqE coenzym 22.0 1.2E+02 0.0025 25.6 3.6 29 89-117 63-91 (358)
427 TIGR00664 DNA_III_psi DNA poly 21.8 2E+02 0.0043 20.6 4.1 73 101-181 7-79 (133)
428 PF00875 DNA_photolyase: DNA p 21.7 1.6E+02 0.0034 21.6 3.8 44 95-143 54-97 (165)
429 PRK12404 stage V sporulation p 21.7 1.8E+02 0.0038 24.5 4.3 67 127-193 28-107 (334)
430 COG4821 Uncharacterized protei 21.7 4E+02 0.0086 20.8 8.8 98 95-193 26-139 (243)
431 cd03018 PRX_AhpE_like Peroxire 21.6 2E+02 0.0044 20.2 4.4 36 95-131 50-85 (149)
432 PF10113 Fibrillarin_2: Fibril 21.6 1.2E+02 0.0026 26.4 3.3 44 150-193 207-254 (505)
433 PRK12388 fructose-1,6-bisphosp 21.5 2.5E+02 0.0054 23.4 5.1 29 92-120 162-190 (321)
434 PRK00414 gmhA phosphoheptose i 21.5 1.3E+02 0.0027 23.0 3.3 31 91-121 122-152 (192)
435 TIGR03590 PseG pseudaminic aci 21.4 4.4E+02 0.0096 21.3 11.2 86 98-193 22-111 (279)
436 PF06901 FrpC: RTX iron-regula 21.3 53 0.0011 25.0 1.2 14 10-23 59-72 (271)
437 KOG0208 Cation transport ATPas 21.3 3.8E+02 0.0083 26.4 6.7 89 93-186 649-744 (1140)
438 KOG1461 Translation initiation 21.3 4.5E+02 0.0098 24.4 6.9 86 93-179 55-141 (673)
439 PF08117 Toxin_30: Ptu family; 21.1 43 0.00094 17.1 0.5 10 248-257 7-16 (35)
440 cd06589 GH31 The enzymes of gl 20.9 1.2E+02 0.0025 24.5 3.2 29 90-118 62-90 (265)
441 COG1436 NtpG Archaeal/vacuolar 20.8 2.9E+02 0.0062 18.8 5.3 45 95-140 34-78 (104)
442 COG1117 PstB ABC-type phosphat 20.7 1.3E+02 0.0028 23.8 3.2 26 95-121 187-212 (253)
443 PRK12415 fructose 1,6-bisphosp 20.5 2.3E+02 0.0051 23.6 4.7 30 92-121 163-192 (322)
444 smart00481 POLIIIAc DNA polyme 20.1 1.6E+02 0.0035 17.5 3.1 23 95-117 16-38 (67)
445 cd04906 ACT_ThrD-I_1 First of 20.0 1.1E+02 0.0023 19.6 2.4 26 94-119 53-78 (85)
446 cd05015 SIS_PGI_1 Phosphogluco 20.0 3.6E+02 0.0077 19.7 6.8 20 106-125 48-67 (158)
447 cd06259 YdcF-like YdcF-like. Y 20.0 3.3E+02 0.0072 19.3 5.6 86 96-186 23-119 (150)
448 PF05402 PqqD: Coenzyme PQQ sy 20.0 1.5E+02 0.0033 17.7 2.9 15 94-108 52-66 (68)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=1.9e-42 Score=290.02 Aligned_cols=254 Identities=78% Similarity=1.268 Sum_probs=228.5
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (260)
...+|+|+||+||||+|+...+..++..+++++|..++........|.+..+.++.+++.++++...+++.+.+.+.+..
T Consensus 8 ~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
T PLN02940 8 KKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSE 87 (382)
T ss_pred cccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998887777788889888888888888888776667777777776666
Q ss_pred hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
.+....++||+.++|+.|+++|++++|+||+....+...+++..++..+|+.+++++++...||+|+.+..++++++++|
T Consensus 88 ~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p 167 (382)
T PLN02940 88 QWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP 167 (382)
T ss_pred HHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence 66678899999999999999999999999999998888883378999999999999999999999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCCCCCcccccCCCCCCCccccccccc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK 245 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (260)
+++++|||+..|+.+|+++|+.++++.++.........++++++++.++...-.++|+++||+.++.+.+|+-+.|.+++
T Consensus 168 ~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~~~~~~~~~y~~~G~Vv~ 247 (382)
T PLN02940 168 SNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWHIGGPVIK 247 (382)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccccCcCCcCCEEEEEEEEe
Confidence 99999999999999999999999999886543434567889999999998887889999999999999999999999999
Q ss_pred cccCCccccCCCCC
Q 024956 246 GLGRGSKVLGIPTG 259 (260)
Q Consensus 246 ~~~~~~~~~~~~~~ 259 (260)
|+|||++.+|+|||
T Consensus 248 G~~~G~~~lg~PTa 261 (382)
T PLN02940 248 GFGRGSKVLGIPTA 261 (382)
T ss_pred CCccCcccCCCCcc
Confidence 99999999999998
No 2
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=213.59 Aligned_cols=211 Identities=25% Similarity=0.398 Sum_probs=179.0
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (260)
+++++|+||+||||+|+...+..++..++++++.. ..........|......+............. +..+.+.+.+..
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLT 80 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHH
Confidence 56899999999999999999999999999999988 6788888888888887776665544333211 344455444444
Q ss_pred hhcc---CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 86 HLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 86 ~~~~---~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
.+.. ..++||+.++|.+|+++|++++|+||.....+...+ +.+|+..+|+.+++.++....||+|..+..++++++
T Consensus 81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~ 159 (220)
T COG0546 81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG 159 (220)
T ss_pred HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence 4332 479999999999999999999999999999999999 889999999999998888999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC-cccc-ccccchhcccccccccccc
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QTHR-YTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~-~~~~-~~~~~~~v~~~~~l~~~~~ 219 (260)
++|++++||||+.+|+.+|+++|+.++.+.+++. .... ...+++++.++.||...+.
T Consensus 160 ~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~ 218 (220)
T COG0546 160 LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLA 218 (220)
T ss_pred CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHh
Confidence 9988999999999999999999999999999764 2233 6679999999999887654
No 3
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=8.9e-32 Score=211.43 Aligned_cols=209 Identities=22% Similarity=0.376 Sum_probs=171.3
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh-hhhhhccCCCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGL-PCAKHEFVNEVYSMFS 84 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (260)
.++|+|+||+||||+|+...+..++.+++.+++...+. .......|.......+.+...... ........+.+.+.+.
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVI 84 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999977654 455667777666666555554432 2233344444444443
Q ss_pred hh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 85 ~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
.. .....++||+.++|+.|+++|++++++||+....++..+ +.+++..+|+.+++++..+..||+|+.++.+++++|+
T Consensus 85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 33 235789999999999999999999999999999999888 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-cccccchhccccccccc
Q 024956 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLRP 216 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~~~~~~~~v~~~~~l~~ 216 (260)
+|++|++|||+.+|+.+|+.+|+.+++++.+....+ ....++.++.++.++..
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTA 217 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhh
Confidence 999999999999999999999999999988544332 24568889999998754
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=3.8e-32 Score=212.37 Aligned_cols=206 Identities=23% Similarity=0.336 Sum_probs=167.7
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (260)
++|+|+||+||||+|+...+..++.+++++++.. .+.+.+....|.+..+.+..+ . +...+.+...+...+...
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ 76 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKI----D-ESKVEEMITTYREFNHEH 76 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhc----C-HHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999998754 456667777787765544432 1 112233333333333322
Q ss_pred h-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 87 ~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
. ....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++....||+|+.+..++++++++|
T Consensus 77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~ 155 (214)
T PRK13288 77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP 155 (214)
T ss_pred hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence 2 34679999999999999999999999999999999889 889999999999999999999999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~ 219 (260)
++++||||+++|+.+|+++|+.++++.++..... . ...++++++++.++.+.+.
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~ 211 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVG 211 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHh
Confidence 9999999999999999999999999988643332 2 3568899999999877653
No 5
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=6e-32 Score=215.33 Aligned_cols=206 Identities=26% Similarity=0.345 Sum_probs=163.6
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCC----CCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
+.++|+|+||+||||+|+...+..++.+++++++. +.+.+.+ ....|.+..+.+..++.. ... ...++...+.
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 96 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKE 96 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHH
Confidence 35689999999999999999999999999999863 3344433 355677665555444321 111 0112222333
Q ss_pred HHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956 81 SMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (260)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~ 159 (260)
..+.... ....++||+.++|++|+++|++++|+||+....++..+ +.+++..+|+.++++++++..||+|+.|..+++
T Consensus 97 ~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~ 175 (248)
T PLN02770 97 ALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALE 175 (248)
T ss_pred HHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHH
Confidence 3343332 35789999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhccccccc
Q 024956 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDL 214 (260)
Q Consensus 160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l 214 (260)
+++++|++++||||++.|+++|+++|+.++++.++...... ...++++++++.++
T Consensus 176 ~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 176 VLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred HhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 99999999999999999999999999999999886433323 45788999999983
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=6.1e-32 Score=212.21 Aligned_cols=208 Identities=24% Similarity=0.368 Sum_probs=171.8
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh-ccCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhh
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCA-KHEFVNEVYSMFSDH 86 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 86 (260)
+|+|+||+||||+|+...+..++.+++++++.+.+...... +.|....+.++.++...+.+.. .+++...+.+.+...
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998777666655 7788888888888776664311 223334444444443
Q ss_pred hc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc--cccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 87 ~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~--~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
+. ..+++||+.++|+.|+++|++++++||+....+...+ +.+++. .+|+.++++++....||+|+.+..++++++
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 32 4689999999999999999999999999999999999 888998 999999999999899999999999999999
Q ss_pred CC-CCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc--ccccchhcccccccccc
Q 024956 163 ME-PSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (260)
Q Consensus 163 ~~-~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~ 217 (260)
+. |++++||||+++|+.+|+++|+.+ +++.++...... ...++++++++.++...
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 218 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPAL 218 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHh
Confidence 97 799999999999999999999999 888775433322 34678888998887654
No 7
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=100.00 E-value=9.9e-32 Score=210.05 Aligned_cols=205 Identities=22% Similarity=0.302 Sum_probs=168.7
Q ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhhh
Q 024956 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH---EFVNEVYSMFSDHL 87 (260)
Q Consensus 12 vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 87 (260)
|+||+||||+|+...+..++..++++++.. .+.+.+....|......++.++..++...+.+ ++.+.+...+....
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999988889999999999875 45566667778777777777776665543332 22333344443333
Q ss_pred c-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 88 C-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 88 ~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
. ...++||+.++|+.|+++|++++++|++....++..+ +++++..+|+.++++++.+..||+|+.+..++++++++|+
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 2 4689999999999999999999999999999999888 8899999999999999999999999999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccc
Q 024956 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (260)
Q Consensus 167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~ 217 (260)
+++||||+.+|+.+|+++|+.++++.++...... ...++++++++.++...
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~ 212 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPL 212 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhh
Confidence 9999999999999999999999999886543322 35688999999987653
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=8.2e-32 Score=212.25 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=167.2
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (260)
.++|+|+||+||||+|+...+..++..+++++|.+ .+.+......|.+....++.+..... ....+++.+.+.+.+..
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 88 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYEA 88 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999875 45555555666554444333322111 01123444455555544
Q ss_pred hh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 86 ~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
.. ....++||+.++|++|+++|++++++||+........+ +.+++..+|+.+++++..+..||+|+.+..+++++|++
T Consensus 89 ~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~ 167 (229)
T PRK13226 89 LIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVA 167 (229)
T ss_pred hhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCC
Confidence 33 34789999999999999999999999999998888788 88999999999999988889999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc--c-ccccchhccccccccccc
Q 024956 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--R-YTAADEVINSLLDLRPEK 218 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~--~-~~~~~~~v~~~~~l~~~~ 218 (260)
|++++||||+.+|+.+|+++|+.++++.++..... . ...++++++++.+|.+.+
T Consensus 168 p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 168 PTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPA 224 (229)
T ss_pred hhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHh
Confidence 99999999999999999999999999988654221 2 356899999999986654
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=9.7e-32 Score=214.32 Aligned_cols=210 Identities=22% Similarity=0.296 Sum_probs=166.9
Q ss_pred ccccEEEEecCCccccCH-HHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMF 83 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (260)
..+|+|+|||||||+|+. ..+..++.++++++|...+.... ....|.+....++.++... ... ...++...+...+
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~ 100 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWS-RDFLQMKRLAIRKEDLY 100 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence 358999999999999995 56677999999999987765544 5678888777766654321 110 1122233333333
Q ss_pred Hhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 84 SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 84 ~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
.... ....++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++++...||+|+.|..++++++
T Consensus 101 ~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~ 179 (260)
T PLN03243 101 EYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLG 179 (260)
T ss_pred HHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhC
Confidence 2211 24678999999999999999999999999999999888 889999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
++|++++||||+..|+.+|+.+|+.++++.. .........++++++++.++.....
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g-~~~~~~l~~ad~vi~~~~el~~~~~ 235 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRRLDDLSVVDL 235 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEec-CCchhhhccCCEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999974 3333334468889999999876654
No 10
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=2e-31 Score=213.43 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=164.5
Q ss_pred cccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHH----------HHHHhCCCCCHHH--
Q 024956 8 LMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI----------IVEDYGLPCAKHE-- 74 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~-- 74 (260)
++|+|+||+||||+|+.. .+..++.++++++|.+.+.+.+....|.+....++. +.+.++.....+.
T Consensus 1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T TIGR01422 1 KIEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIE 80 (253)
T ss_pred CceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHH
Confidence 368999999999999854 346788899999998777776766777665443332 3344554433322
Q ss_pred -HHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCCh
Q 024956 75 -FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSP 151 (260)
Q Consensus 75 -~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~~ 151 (260)
+...+...+.... ....++||+.++|+.|+++|++++|+||+....++..+ +.+|+..+| +.++++++.+..||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p 159 (253)
T TIGR01422 81 AIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAP 159 (253)
T ss_pred HHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCH
Confidence 2223333322222 35789999999999999999999999999999999888 888999886 8999999999999999
Q ss_pred HHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------ccc-ccccc
Q 024956 152 DIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAAD 205 (260)
Q Consensus 152 ~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~-~~~~~ 205 (260)
+.+..+++++++. |++++||||+++|+.+|+++|+.+|++.++... ... ...++
T Consensus 160 ~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (253)
T TIGR01422 160 WMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAH 239 (253)
T ss_pred HHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999995 999999999999999999999999999886542 122 45689
Q ss_pred hhccccccccccc
Q 024956 206 EVINSLLDLRPEK 218 (260)
Q Consensus 206 ~~v~~~~~l~~~~ 218 (260)
++++++.++.+.+
T Consensus 240 ~v~~~~~el~~~~ 252 (253)
T TIGR01422 240 YVIDTLAELPAVI 252 (253)
T ss_pred EehhcHHHHHHhh
Confidence 9999999986553
No 11
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.98 E-value=6.6e-31 Score=216.48 Aligned_cols=209 Identities=24% Similarity=0.280 Sum_probs=169.6
Q ss_pred ccccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChh-hhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
...++|||||||||+|+.. .+..++.++++++|...... ......|.+..+.++.++.........+++.+.+.+.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~ 208 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQ 208 (381)
T ss_pred CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 3679999999999999976 55578999999999876555 346788988887777765432211112334444444444
Q ss_pred hhhc-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 85 DHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 85 ~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
.... ...++||+.++|+.|+++|++++|+||+....++..+ +.+|+..+|+.++++++....||+|+.|..+++++|+
T Consensus 209 ~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl 287 (381)
T PLN02575 209 ALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNF 287 (381)
T ss_pred HHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCC
Confidence 3332 4678999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 217 (260)
.|++|+||||+..|+++|+++|+.+|++.++.... ....++++++++.||...
T Consensus 288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~~ 340 (381)
T PLN02575 288 IPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSIV 340 (381)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHHH
Confidence 99999999999999999999999999998743222 234588899999998543
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.98 E-value=4.7e-31 Score=212.69 Aligned_cols=213 Identities=19% Similarity=0.246 Sum_probs=165.1
Q ss_pred cccccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHH----------HHHhCCCCCHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKHE 74 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~ 74 (260)
|+++|+|+||+||||+|+.. .+..++.++++++|.+.+.+......|.+....++.+ ...++.....+.
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEAD 80 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHH
Confidence 45689999999999999853 3357889999999987766666667776654433332 334454333222
Q ss_pred ---HHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCC
Q 024956 75 ---FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKP 149 (260)
Q Consensus 75 ---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp 149 (260)
+...+...+.... ....++||+.++|+.|+++|++++|+||+....+...+ +.+++..+| +.++++++.+..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP 159 (267)
T PRK13478 81 VDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRP 159 (267)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCC
Confidence 2233333333222 35789999999999999999999999999999888888 777777764 88999999999999
Q ss_pred ChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------ccc-ccc
Q 024956 150 SPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTA 203 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~-~~~ 203 (260)
+|+.+..+++++++. +++++||||+++|+.+|+++|+.+|++.+++.. ... ...
T Consensus 160 ~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (267)
T PRK13478 160 YPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAG 239 (267)
T ss_pred ChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999996 699999999999999999999999999986542 122 456
Q ss_pred cchhcccccccccccc
Q 024956 204 ADEVINSLLDLRPEKW 219 (260)
Q Consensus 204 ~~~~v~~~~~l~~~~~ 219 (260)
++++++++.++...+.
T Consensus 240 a~~vi~~~~~l~~~l~ 255 (267)
T PRK13478 240 AHYVIDTIADLPAVIA 255 (267)
T ss_pred CCeehhhHHHHHHHHH
Confidence 8999999999887653
No 13
>PRK11587 putative phosphatase; Provisional
Probab=99.98 E-value=1.1e-30 Score=204.48 Aligned_cols=202 Identities=27% Similarity=0.401 Sum_probs=157.6
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HHh
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FSD 85 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (260)
++|+|+||+||||+|+...+..++.++++++|.+. .+......|.+....++.+... ...+++.+.+... +..
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAG----ASEAEIQAEFTRLEQIEA 76 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhcc----CCcHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999753 2223344576666555544321 1223333333321 111
Q ss_pred -hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 86 -HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 86 -~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
......++||+.++|+.|+++|++++++||+........+ +..++ .+|+.++++++....||+|+.+..+++++|++
T Consensus 77 ~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~ 154 (218)
T PRK11587 77 TDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA 154 (218)
T ss_pred hhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence 2245789999999999999999999999999888777667 77777 45788888888888999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 217 (260)
|++++||||+..|+.+|+++|+.+++++++... .....++++++++.+|...
T Consensus 155 p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred cccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhheeEE
Confidence 999999999999999999999999999875432 2345688899999987533
No 14
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.98 E-value=9.5e-31 Score=205.53 Aligned_cols=208 Identities=23% Similarity=0.350 Sum_probs=170.0
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhh-hhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (260)
+++|+|+||+||||+|+...+..++.++++++|.+.+.++ .....|.+....++.+...++.+.+.+++...+.+.+..
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVAR 81 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999998888999999999998766543 456677778888888888888776556665555544433
Q ss_pred h-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc-eEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 86 H-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 86 ~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~-~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
. .....++||+.++|+.|+ ++++++||+....+...+ +.+++..+|+ .++++++.+..||+|+.|..+++++++
T Consensus 82 ~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~ 157 (221)
T PRK10563 82 LFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNV 157 (221)
T ss_pred HHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCC
Confidence 2 245789999999999993 899999999999898888 8899999996 677888888999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 218 (260)
+|++|+||||++.|+.+|+++|+.++++..+.........+..++.++.||...+
T Consensus 158 ~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (221)
T PRK10563 158 NVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELW 212 (221)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999763332223344566788888877654
No 15
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=3.1e-30 Score=197.70 Aligned_cols=185 Identities=28% Similarity=0.454 Sum_probs=159.1
Q ss_pred ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (260)
Q Consensus 5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
||+++|+|+||+||||+|+...+..++.++++++|.+.+........|.+..+.++.+...++.....+++...+...+.
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVK 80 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999877666777788888877778887777665555555555544444
Q ss_pred hhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 85 ~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
... ....++|+ .++|..|++. ++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.+..+++++++
T Consensus 81 ~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~ 157 (188)
T PRK10725 81 SMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV 157 (188)
T ss_pred HHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC
Confidence 332 34567885 6999999876 899999999999999899 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 024956 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~ 192 (260)
+|++++||||+..|+++|+.+|+.+|.+.
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999874
No 16
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=202.18 Aligned_cols=208 Identities=33% Similarity=0.495 Sum_probs=170.6
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHh
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSD 85 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 85 (260)
++|+|||||||||+|+...+..+|.++++++|...+.+......|.........+.+...... ...............
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999998888877788877777777777665442 222222223333334
Q ss_pred hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
.....++.||+.++|++|+++|+++++.|++.+..+...+ +..|+.++|+.+++++++..+||+|+.|..+++++|++|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 4456899999999999999999999999999999999899 999999999999999999999999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc----ccccccchhccccccccc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRP 216 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~----~~~~~~~~~v~~~~~l~~ 216 (260)
++|+.|+|+++.+.+++++||.++.+..+.... .....++....++.++..
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPA 214 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHH
Confidence 999999999999999999999999998843321 113344555555555443
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=1.8e-30 Score=204.04 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=149.1
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHH---HHHcCCCCChhhhhhcc-------CCCHHHHHHHHHHHhCCCCCHHHHHHH
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGREKHKIV-------GKTPLEEAAIIVEDYGLPCAKHEFVNE 78 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (260)
+++|+||+||||+|+...+..++..+ +.+.+.+.+.+...... +........................+.
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAAF 81 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHHH
Confidence 78999999999999987766665544 34556555544332211 110000111112222221112222222
Q ss_pred HHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHH
Q 024956 79 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l 158 (260)
...........+.++||+.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.|..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~ 160 (221)
T TIGR02253 82 VYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAAL 160 (221)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHHH
Confidence 22222323345789999999999999999999999999998888888 88999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc---ccccccchhccccccc
Q 024956 159 KRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLDL 214 (260)
Q Consensus 159 ~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~---~~~~~~~~~v~~~~~l 214 (260)
++++++|++++||||++ +|+.+|+++|+.++++.++.... .....++++++++.++
T Consensus 161 ~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 161 KRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 99999999999999998 89999999999999998854432 1234577888888775
No 18
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=3.4e-30 Score=207.52 Aligned_cols=210 Identities=25% Similarity=0.311 Sum_probs=167.1
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHH----hCCC-CCHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVED----YGLP-CAKHEFVNEVY 80 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~ 80 (260)
..+|+|+||+||||+|+...+..++..++++++.+.. .+.+....+.+.......++.. .+++ ...+.+.+.+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999999999998753 3445566676655555444321 1221 01122333333
Q ss_pred HHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH
Q 024956 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~ 160 (260)
+.+........++||+.++|+.|+++|++++++||+....+...+ ..+++..+|+.+++++..+..||+|+.++.++++
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 333332334678999999999999999999999999998888888 8889999999999999888899999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccc
Q 024956 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE 217 (260)
Q Consensus 161 l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~ 217 (260)
+|++|++++||||+.+|+++|+.+|+.++++.++...... ...++++++++.+|...
T Consensus 170 ~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~ 228 (272)
T PRK13223 170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPG 228 (272)
T ss_pred hCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHH
Confidence 9999999999999999999999999999999886543332 35789999999998755
No 19
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.97 E-value=5.5e-30 Score=198.88 Aligned_cols=199 Identities=24% Similarity=0.309 Sum_probs=159.0
Q ss_pred EEEecCCccccCHHHHHHHHHHHHHHc-CCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956 12 VILDLDGTLLNTDGMFSEVLKTFLVKY-GKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (260)
Q Consensus 12 vifD~DGTL~d~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (260)
|+||+||||+|+...+..++.+++++. +.+ .+.+.+....|......++ ..+.+. .. ...+..........
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~--~~-~~~~~~~~~~~~~~ 73 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMR----IMGLPL--EM-EEPFVRESYRLAGE 73 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHH----HcCCCH--HH-HHHHHHHHHHhhcc
Confidence 689999999999999999999999874 653 4555566666765544433 334331 11 11111111122346
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
..++||+.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+++.+..++++++++|++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 789999999999999999999999999999998888 8899999999999999888999999999999999999999999
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK 218 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~ 218 (260)
||||+.+|+.+|+++|+.++.+.++...... ...++++++++.++...+
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC 203 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence 9999999999999999999999987544332 456889999999886543
No 20
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=2e-29 Score=198.85 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=171.1
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC-ChhhhhhccCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSM 82 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 82 (260)
+++++|+||+||||+|+...+..++..++++++.+. +...+....+......++..+...+...+.++ ....+.+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 468999999999999998888889999999988753 45556667777776666666554433333222 23334444
Q ss_pred HHhhhc-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 83 FSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
+..... ...++||+.++++.|++.|++++++||+....+...+ +.+++..+|+.+++++..+..||+|+.++.+++++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 162 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL 162 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence 433332 4789999999999999999999999999999888888 88899999999999998889999999999999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~ 219 (260)
+++++++++|||+.+|+++|+.+|+.++++.++..... . ...++++++++.+|...+.
T Consensus 163 ~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~ 222 (226)
T PRK13222 163 GLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLG 222 (226)
T ss_pred CCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHH
Confidence 99999999999999999999999999999998654222 2 4568899999999877653
No 21
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=5.6e-30 Score=205.44 Aligned_cols=205 Identities=19% Similarity=0.288 Sum_probs=164.1
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFS 84 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (260)
+++|+|+||+||||+|+...+..++.++++++|.+ .+.+.+....+...... ++.++... ..+++...+.+.+.
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~ 135 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTI----VRRAGLSPWQQARLLQRVQRQLG 135 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHH----HHHcCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999975 44445556666544333 33344321 12334445555555
Q ss_pred hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
......+++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++.+... ++++.+..++++++++
T Consensus 136 ~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~~---~k~~~~~~~l~~~~~~ 211 (273)
T PRK13225 136 DCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPIL---SKRRALSQLVAREGWQ 211 (273)
T ss_pred hhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCCC---CCHHHHHHHHHHhCcC
Confidence 44556789999999999999999999999999999999999 8899999999988776542 4568999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~ 219 (260)
|++++||||+.+|+.+|+++|+.++++.++..... . ...++++++++.+|.+.+.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~ 268 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVT 268 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHH
Confidence 99999999999999999999999999998655443 2 4578999999999987654
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.97 E-value=8e-29 Score=189.42 Aligned_cols=178 Identities=30% Similarity=0.444 Sum_probs=149.2
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHhhh
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMFSDHL 87 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 87 (260)
+|+||+||||+|+...+..++.++++.++.+.+........+.+..+.++.++...+...+.+.. .+.+.+.+...+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999887766667778888888888888887765444332 223223333222
Q ss_pred ---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 88 ---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 88 ---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
....++||+.++|+.|+++|++++++|++.. ....+ +.+++..+|+.++++++.+..||+|+.|..++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 2347899999999999999999999998653 34567 88999999999999999999999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 165 PSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
|++++||||+.+|+.+|+.+|+.+|.+
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 999999999999999999999999986
No 23
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.97 E-value=4.7e-29 Score=196.42 Aligned_cols=203 Identities=21% Similarity=0.264 Sum_probs=155.0
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc------------CC-CHH----HHHHHHHHHhCCCCC
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------GK-TPL----EEAAIIVEDYGLPCA 71 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~-~~~----~~~~~~~~~~~~~~~ 71 (260)
+|+|+||+||||+|+...+..++.+++++++...+......+. +. ... ..+..+++.++.+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 5899999999999999888888898888888665433221111 11 011 112233444443322
Q ss_pred HHHHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCC
Q 024956 72 KHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150 (260)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~ 150 (260)
.+. +...+.... ...+++||+.++|++|++. ++++++||+....+...+ +.+++..+|+.++++++.+..||+
T Consensus 81 ~~~----~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~ 154 (224)
T TIGR02254 81 EAL----LNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPD 154 (224)
T ss_pred HHH----HHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCC
Confidence 112 222222222 2468899999999999999 999999999999888888 889999999999999999999999
Q ss_pred hHHHHHHHHHc-CCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956 151 PDIFLEAAKRL-NMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 151 ~~~~~~~l~~l-~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 217 (260)
|+++..+++++ +++|++++||||++ +|+.+|+.+|+.+++++++.........++++++++.+|...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 155 KEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI 223 (224)
T ss_pred HHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence 99999999999 99999999999998 799999999999999987544333345678889998887654
No 24
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.97 E-value=1.2e-28 Score=188.41 Aligned_cols=180 Identities=30% Similarity=0.497 Sum_probs=149.8
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHh
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSD 85 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (260)
+|+|+||+||||+|+...+..++..++++++..++........|.+....+..++..++...+.++ +.+.+.+.+..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999987665445566777777888888877644433333 23333344433
Q ss_pred hh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 86 HL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 86 ~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
.. ....++||+.++|+.|+++|++++++|++ ..++..+ +.+++..+|+.++++++.+..||+|+.+..+++++++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 157 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV 157 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence 33 24789999999999999999999999998 5567777 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
+|++++||||+..|+.+|+.+|+.++.+
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999999998864
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=99.97 E-value=8.7e-29 Score=194.84 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=147.3
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhc--cCCC-----------HHHH----HHHHHHHhCCCC
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKT-----------PLEE----AAIIVEDYGLPC 70 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-----------~~~~----~~~~~~~~~~~~ 70 (260)
++|+|+||+||||+|.. ...++.++++.+|...+.+.+..+ .+.+ ..+. ++.+.+.++..
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVT- 78 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCC-
Confidence 58999999999999854 245777888888876554433322 1111 0000 11122222221
Q ss_pred CHHHHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCC
Q 024956 71 AKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 149 (260)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp 149 (260)
..++ .+.+...+ ....++||+.++|++|+ +|++++++||+........+ +.+|+..+|+.++++++.+..||
T Consensus 79 -~~~~----~~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP 151 (224)
T PRK09449 79 -PGEL----NSAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKP 151 (224)
T ss_pred -HHHH----HHHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCC
Confidence 1222 22222222 24678999999999999 57999999999999888888 88999999999999999999999
Q ss_pred ChHHHHHHHHHcCCCC-CcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956 150 SPDIFLEAAKRLNMEP-SSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~-~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 218 (260)
+|++|..+++++|+.+ ++++||||+. +|+.+|+++|+.+++++++.........++++++++.+|...+
T Consensus 152 ~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l 222 (224)
T PRK09449 152 DVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLL 222 (224)
T ss_pred CHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHH
Confidence 9999999999999854 7999999998 7999999999999999863222222335788999998887643
No 26
>PLN02811 hydrolase
Probab=99.96 E-value=6e-28 Score=189.26 Aligned_cols=202 Identities=40% Similarity=0.671 Sum_probs=164.6
Q ss_pred cCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhccCCCC
Q 024956 16 LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKAL 93 (260)
Q Consensus 16 ~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
|||||+|+...+..+|.+++++++...+.......+|.+....+..+....+++. ..+.+.......+........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 6999999999999999999999998876666777889888888888888776642 33444444444444444567889
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc--ccCCCCCChHHHHHHHHHcC---CCCCcE
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSS 168 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~--~~~~~kp~~~~~~~~l~~l~---~~~~~~ 168 (260)
||+.++|+.|+++|++++|+||.........+.+..++..+|+.+++++ +++..||+|+.|..++++++ ++|+++
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 9999999999999999999999987655544424457788999999999 88889999999999999997 999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 217 (260)
+||||+..|+++|+++|+.+|++.++.........++++++++.++...
T Consensus 161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~ 209 (220)
T PLN02811 161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPE 209 (220)
T ss_pred EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHH
Confidence 9999999999999999999999987543333345788999999886544
No 27
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.96 E-value=1.2e-28 Score=212.53 Aligned_cols=208 Identities=15% Similarity=0.198 Sum_probs=165.1
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcC------CCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
+|+++|+||+||||+|+...+..++.+++++++ ...+.+.+....|.+..+.++.+....+.. ..++....+.
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 317 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQTDAYFL 317 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHHHHHHH
Confidence 457999999999999999999999999998874 122345667788888887777776654332 1122333333
Q ss_pred HHHHhhh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHH
Q 024956 81 SMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (260)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l 158 (260)
+.+.... ...+++||+.++|++|+++|++++|+||+....+...+ +.+++..+|+.++++++.. .||+|+.+..++
T Consensus 318 ~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al 395 (459)
T PRK06698 318 ERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDLVKSIL 395 (459)
T ss_pred HHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHHHHHHH
Confidence 3333322 24689999999999999999999999999999999999 8899999999999998764 467788999999
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
++++ |+++++|||+++|+.+|+++|+.++++.++.........++++++++.++...+.
T Consensus 396 ~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~ 454 (459)
T PRK06698 396 NKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILS 454 (459)
T ss_pred HhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHH
Confidence 8864 6899999999999999999999999998865444444568999999999877653
No 28
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=1.2e-27 Score=193.77 Aligned_cols=210 Identities=27% Similarity=0.406 Sum_probs=153.3
Q ss_pred ccccEEEEecCCccccCH-HHHHHHHHHHHHHcCC-CC--Chhhhhh--ccCCCHHHHHHHHHHHhCCC--------CCH
Q 024956 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGK-EW--DGREKHK--IVGKTPLEEAAIIVEDYGLP--------CAK 72 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~--~~g~~~~~~~~~~~~~~~~~--------~~~ 72 (260)
..+++|+|||||||+|+. ..+..++.++++++|. .. +.+.+.. ..|.+.....+.+ ...+.. .+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYF-NENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHH-HHcCCCccccccCCccc
Confidence 457999999999999999 9999999999999987 32 2222211 2454443333332 222221 111
Q ss_pred ---HHHHH----HHHHHHHhhhc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc---cceEEe
Q 024956 73 ---HEFVN----EVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES---FSVIVG 140 (260)
Q Consensus 73 ---~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~---f~~i~~ 140 (260)
++..+ .....+...+. .++++||+.++|+.|+++|++++|+||+....+...+ +..+...+ |+.+ +
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-A 194 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-e
Confidence 11222 22233333332 2589999999999999999999999999998888777 54432233 3444 7
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 141 ~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
+++++..||+|+.|..++++++++|++++||||+.+|+.+|+++|+.+|++.++.........++++++++.++...-+
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~ 273 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDF 273 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhh
Confidence 7778889999999999999999999999999999999999999999999998865544334568999999999876543
No 29
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.96 E-value=8.2e-28 Score=185.72 Aligned_cols=179 Identities=18% Similarity=0.322 Sum_probs=135.2
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh--------h-hhhhccCCC------HHHHHHHHHHHhCCCCCHH
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG--------R-EKHKIVGKT------PLEEAAIIVEDYGLPCAKH 73 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~g~~------~~~~~~~~~~~~~~~~~~~ 73 (260)
+|+|+||+||||+|+... ...+.+.+...+..... . ......|.. ....++.+++.++......
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDES 79 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHH
Confidence 478999999999998764 33344433222111100 0 000111211 1244566677777653322
Q ss_pred HHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH
Q 024956 74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (260)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~ 153 (260)
..+. +.+.+....++|++.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++++..||+++.
T Consensus 80 -~~~~----~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~ 153 (198)
T TIGR01428 80 -AADR----LAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQV 153 (198)
T ss_pred -HHHH----HHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHH
Confidence 1222 2333445788999999999999999999999999999999888 889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
|..++++++++|+++++|||+++|+.+|+.+|+.+|++++.
T Consensus 154 ~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 154 YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 99999999999999999999999999999999999999883
No 30
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=3.9e-27 Score=218.88 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=174.2
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (260)
.++|+|+|||||||+|+...+..++.++++++|.+++.+.+....|....+.+..+...+++. .+.++..+.+.+.+..
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE 152 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999888777778888888777777766666543 2334444444444433
Q ss_pred hhc---cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-cccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 86 HLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 86 ~~~---~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
.+. ...++||+.++|++|+++|++++|+||.....++..+ +.+++. .+|+.+++++++...||+|+.|..+++++
T Consensus 153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~l 231 (1057)
T PLN02919 153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKIL 231 (1057)
T ss_pred HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHc
Confidence 221 2347999999999999999999999999999999888 888996 78999999999999999999999999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhcccccccc
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l~ 215 (260)
+++|++++||||+..|+++|+++|+.+|++.++....+. ...++++++++.++.
T Consensus 232 gv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~ 286 (1057)
T PLN02919 232 GVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNIS 286 (1057)
T ss_pred CcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCC
Confidence 999999999999999999999999999999986544333 456788999999974
No 31
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.96 E-value=1.4e-27 Score=189.25 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=146.8
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC------CChhhhhhccC------------C--CHHHHHHHHHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE------WDGREKHKIVG------------K--TPLEEAAIIVED 65 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g------------~--~~~~~~~~~~~~ 65 (260)
+.++|+|+||+||||+|+...+..+++++++..+.. +....+..+.+ . .....++.+++.
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 456899999999999999888888777766544211 11111111000 0 012334556666
Q ss_pred hCCCCCHHH-HHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956 66 YGLPCAKHE-FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 144 (260)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~ 144 (260)
++++....+ ..+.....+........++||+.++|++|++. ++++++||++.. + +..|+..+|+.++++++.
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~~~ 159 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAGPH 159 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecccC
Confidence 666422211 11122222333334578999999999999976 999999998765 3 668999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc----ccccccchhcccccccccc
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~----~~~~~~~~~v~~~~~l~~~ 217 (260)
+..||+|+.|..++++++++|++++||||++ .|+.+|+.+|+.+++++.+.... .....++..++++.||.+.
T Consensus 160 ~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~ 237 (238)
T PRK10748 160 GRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSL 237 (238)
T ss_pred CcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhh
Confidence 9999999999999999999999999999995 99999999999999998843221 1124577888888887654
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.96 E-value=8.3e-28 Score=181.93 Aligned_cols=175 Identities=31% Similarity=0.531 Sum_probs=146.1
Q ss_pred EEEecCCccccCHHHHHHHHHH-HHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 024956 12 VILDLDGTLLNTDGMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (260)
Q Consensus 12 vifD~DGTL~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
|+||+||||+|+...+..++.. +.+.++...+...++...+....+.++.++...+.. ...+.+.+.+. ......
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~ 76 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKL 76 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhcc
Confidence 7999999999998877778776 477777665556666667777777777777766432 22222222222 113568
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
+++|++.++|+.|+++|++++++||++...+...+ +.+|+..+|+.++++++.+..||+++.|+.++++++++|+++++
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred chhhhhhhhhhhcccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 89999999999999999999999999999999899 88999999999999999999999999999999999999999999
Q ss_pred EecCHhhHHHHHHcCCeEEEE
Q 024956 171 IEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
|||++.|+.+|+.+|+.+|++
T Consensus 156 vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 156 VGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EESSHHHHHHHHHTTSEEEEE
T ss_pred EeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999975
No 33
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.96 E-value=2.7e-27 Score=185.58 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=99.4
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.|..++++++++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 46789999999999999999999999999999988888 88999999999999999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeE-EEEcCCC
Q 024956 168 SLVIEDSVIGVVAGKAAGMEV-VAVPSLP 195 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~ 195 (260)
++||||+++|+++|+.+|+.+ +++..+.
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 999999999999999999985 6666643
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.95 E-value=5.4e-27 Score=181.86 Aligned_cols=178 Identities=28% Similarity=0.351 Sum_probs=136.6
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh------------------ccCCCHHHH----HHHHHHHhC
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK------------------IVGKTPLEE----AAIIVEDYG 67 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~~~~~~----~~~~~~~~~ 67 (260)
|+|+||+||||+|+...+..++.++++++|.......... ..|.+..+. ++..+...+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5899999999999988888899999999998765433210 014343322 333334444
Q ss_pred CCCCHHHHHHHHHHHHHhhh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC
Q 024956 68 LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (260)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~ 145 (260)
.. ....+.+.+...+.... ....++||+.++|+.|+++|++++|+||+... ....+ +.+|+..+|+.+++++..+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l-~~~~l~~~fd~i~~s~~~~ 157 (203)
T TIGR02252 81 VP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLL-EALGLLEYFDFVVTSYEVG 157 (203)
T ss_pred CC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHH-HHCCcHHhcceEEeecccC
Confidence 22 22233333333332221 23578999999999999999999999998765 46677 8889999999999999999
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEE
Q 024956 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA 190 (260)
Q Consensus 146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~ 190 (260)
..||+|+.|..++++++++|++++||||++ +|+.+|+++|+.+|+
T Consensus 158 ~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 158 AEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 999999999999999999999999999998 899999999999874
No 35
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.95 E-value=5e-26 Score=174.24 Aligned_cols=213 Identities=38% Similarity=0.587 Sum_probs=187.1
Q ss_pred CccccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 024956 2 AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (260)
Q Consensus 2 ~~~~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
+..+...+.+++||+||||+|+...+.+.++.++.+++..++.......+|....+..+.++..+..+.+.+++..+..+
T Consensus 3 ~~~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~ 82 (222)
T KOG2914|consen 3 SKSLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEE 82 (222)
T ss_pred ccccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 33455678899999999999999999999999999999988888889999999999999999888899999999999999
Q ss_pred HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC-CccccceEEe--ccccCCCCCChHHHHHHH
Q 024956 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVG--SDEVRTGKPSPDIFLEAA 158 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g-l~~~f~~i~~--~~~~~~~kp~~~~~~~~l 158 (260)
.+...+....+.||+.++++.|+.+|++++++|+.........+ ++++ +...|+.++. ...+..+||+|++|..+.
T Consensus 83 ~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~-~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~ 161 (222)
T KOG2914|consen 83 ILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKI-SRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAA 161 (222)
T ss_pred HHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHH-HHhhHHHHhcCCCeecCCccccCCCCCchHHHHHH
Confidence 99988888999999999999999999999999999888888788 5554 6677887776 567788999999999999
Q ss_pred HHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956 159 KRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR 215 (260)
Q Consensus 159 ~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~ 215 (260)
++++.+| +.+++|+|+++.+++|+++|+.+|++....-.......++.+++++.+..
T Consensus 162 ~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T KOG2914|consen 162 KRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFK 219 (222)
T ss_pred HhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccC
Confidence 9999998 99999999999999999999999999883333334667777777776653
No 36
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.94 E-value=1.6e-25 Score=172.61 Aligned_cols=173 Identities=16% Similarity=0.231 Sum_probs=133.0
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHHHcC-CCCChhhhhhccCCCHH--------HHHHHHHHHhC-----CCCCHHHH
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPL--------EEAAIIVEDYG-----LPCAKHEF 75 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~-----~~~~~~~~ 75 (260)
++|+||+||||+|+...+..++..++++++ ...+.+.+..+.|.+.. ..+...+.... .....+.+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 479999999999999999999999999987 56666666666654321 11111221110 11233444
Q ss_pred HHHHHHHHHhhh----------ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC
Q 024956 76 VNEVYSMFSDHL----------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (260)
Q Consensus 76 ~~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~ 145 (260)
.+.+.+.+.... ...++.+++.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCC
Confidence 455555544211 12244556799999999999999999999999999999 8899999999999999887
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
. ||+|+.+..+++++++++++++||||+++|+.+|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 7 9999999999999999999999999999999999874
No 37
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=8e-26 Score=178.60 Aligned_cols=129 Identities=27% Similarity=0.358 Sum_probs=114.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
..+++|++.+.|++++++ ++++++||+....+...+ +.+|+..+||.++.++..+..||++++|+.+++++|++|+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 478999999999999999 999999999999899899 889999999999999999999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCcc-ccccccchhcccccccccccc
Q 024956 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 169 ~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~~ 219 (260)
+||||++ ||+.+|+.+|+.+++++.+.... .....+++.+.++.++.+.+.
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLE 227 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHh
Confidence 9999999 78899999999999999843322 122567888888888876653
No 38
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.94 E-value=1.5e-25 Score=174.73 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=124.5
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-----
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF----- 83 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 83 (260)
+|+|+||+||||+|+.. ....|...+...+.+ .........+.......+.+. .+ ..+.+++.+.+.+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~~~~~~~~~~~~~~~~ 76 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG-ELTAEAFDGLFRHEYGLRLG 76 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC-CCCHHHHHHHHHHHhccccC
Confidence 57999999999999966 555565544444432 121222233332222222110 11 111222222222111
Q ss_pred ---------Hhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHh--HHHHHHhhcCCccccceEEeccccCCCCCCh
Q 024956 84 ---------SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSP 151 (260)
Q Consensus 84 ---------~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~--~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~ 151 (260)
.... ....++|++.++|++|+++|++++++||+.... ....+ ...++..+|+.++++++.+..||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p 155 (211)
T TIGR02247 77 HDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDP 155 (211)
T ss_pred CCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCH
Confidence 1111 246789999999999999999999999987543 22233 4467888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+.|..+++++|++|++++||||+..|+.+|+++|+.++++.+
T Consensus 156 ~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 156 RIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999999999999999999999999976
No 39
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.94 E-value=4e-25 Score=168.61 Aligned_cols=175 Identities=30% Similarity=0.436 Sum_probs=124.9
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHH------HHHHHH
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE------VYSMFS 84 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 84 (260)
+|+||+||||+++.+.+..... ................ .......+.+...++.......+... ....+.
T Consensus 1 ~vlFDlDgtLv~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEKLVN---REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYD 76 (183)
T ss_pred CeeeccCCceechHHHHHHHHH---HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHH
Confidence 4899999999999876654211 1222112221111111 11222333333334444333332222 222333
Q ss_pred hhhcc--CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 85 DHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 85 ~~~~~--~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
..... .+++||+.++|+.|+++|++++++||+.... ...+ .++|+..+|+.++++++.+..||+|+.++.++++++
T Consensus 77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 154 (183)
T TIGR01509 77 AILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG 154 (183)
T ss_pred HHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence 32233 6899999999999999999999999999887 5454 558999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
++|+++++|||++.|+.+|+.+|+.+|++
T Consensus 155 ~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 155 LKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 99999999999999999999999999864
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.93 E-value=1.3e-24 Score=167.91 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=130.6
Q ss_pred cEEEEecCCccccCHHHHH-HHHHHHH----HHcC--CCCChhhhhhccC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 024956 10 SCVILDLDGTLLNTDGMFS-EVLKTFL----VKYG--KEWDGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~-~~~~~~~----~~~~--~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
.+|+||+||||++.+.... ..+.... ..+. ............| .+..+..+.+.+.++...+.+.+...+.+
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGWQA 80 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3799999999999854221 1111110 0000 0000111112223 44556667788888776554444444433
Q ss_pred HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
.+ ..++||+.++|++|+++|++++++||+........+....++..+|+.++++++++..||+|+.|+.+++++
T Consensus 81 ~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~ 154 (199)
T PRK09456 81 VF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAE 154 (199)
T ss_pred HH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHc
Confidence 22 357999999999999999999999999988766555233477889999999999999999999999999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
|++|++++||||+..|+.+|+++|+.++++..+
T Consensus 155 ~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 155 GFSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred CCChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 999999999999999999999999999999773
No 41
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.93 E-value=8.1e-25 Score=168.84 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=129.5
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-h
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-H 86 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (260)
|+|+|+||+||||+|+. .++.++++++|.+. +.+....+......... .++. +.....+.+..+... .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~ 69 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGE---LFGC--DQELAKKLIEKYNNSDF 69 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHH---Hhcc--cHHHHHHHhhhhhHHHH
Confidence 47899999999999953 34567777777543 34444434322222222 2221 222222223322222 2
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc----ccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~----~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
.....++||+.++|+.|++. ++++++||.........+ ..+++.. +|+.+++++.. ||+|+.+..++++++
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~~---~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGHD---ESKEKLFIKAKEKYG 144 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEeccC---cccHHHHHHHHHHhC
Confidence 24567999999999999987 578888887666554444 5566654 45667776653 567899999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHc--CCeEEEEcCCCCccccccccchhccccccccc
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~--G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~ 216 (260)
|++++||||+.+|+.+|+++ |+.+++++++.. .....+.+.+.++.|+..
T Consensus 145 --~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 145 --DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred --CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence 88999999999999999999 999999998643 333456699999988754
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.92 E-value=1.9e-24 Score=164.95 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=124.1
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHH-----HcCCCCChh-hhh----hccCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLV-----KYGKEWDGR-EKH----KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~-----~~~~~~~~~-~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (260)
++|+||+||||+|+...+..++.+.+. +++.+.... ... ...|... ..+..... ...+.+.+.+
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~----~~~~~~~~--~~~~~~~~~~ 74 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTL----AGLMILHE--IDADEYLRYV 74 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHH----HHHHHhhC--CCHHHHHHHH
Confidence 479999999999997777777766543 445432211 111 1122211 11222222 2222222222
Q ss_pred HHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCC----CCCChHHHH
Q 024956 80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFL 155 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~----~kp~~~~~~ 155 (260)
.+. ......+++||+.++|++|+ ++++++||+....+...+ +.+|+..+|+.++++++.+. .||+|+.|+
T Consensus 75 ~~~--~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 75 HGR--LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hcc--CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 211 11235678999999999998 579999999999999899 88999999999999988876 599999999
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 156 ~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
.+++++|++|++++||||++.|+.+|+++|+.++++
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999999999999864
No 43
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.91 E-value=5.6e-24 Score=166.91 Aligned_cols=194 Identities=20% Similarity=0.238 Sum_probs=129.8
Q ss_pred cccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhcc-C-CCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956 4 PLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIV-G-KTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (260)
Q Consensus 4 ~~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
++++++|+++||+||||+++. .+.++++.++........ .... | .......+.....+. ... .+
T Consensus 9 ~~~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~------ 75 (219)
T TIGR00338 9 PLLRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLK-GLP-VE------ 75 (219)
T ss_pred hhhccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC-CCC-HH------
Confidence 356788999999999999974 344555666643222111 1111 1 112222222222221 101 11
Q ss_pred HHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-------cc---ccCCCCCC
Q 024956 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-------SD---EVRTGKPS 150 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-------~~---~~~~~kp~ 150 (260)
.+.......+++||+.++|+.|+++|++++++|++....+...+ +.+++..+|+..+. +. .....+|+
T Consensus 76 -~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 153 (219)
T TIGR00338 76 -LLKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK 153 (219)
T ss_pred -HHHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence 12222345679999999999999999999999999999888888 88898887753221 11 12234678
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--ccccccc
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP 216 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~ 216 (260)
+..++.+++++++++++++||||+.+|+.+|+.+|+..+ ++. .......+++++. ++.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~-~~~---~~~~~~~a~~~i~~~~~~~~~~ 217 (219)
T TIGR00338 154 GKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIA-FNA---KPKLQQKADICINKKDLTDILP 217 (219)
T ss_pred HHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEE-eCC---CHHHHHhchhccCCCCHHHHHh
Confidence 999999999999999999999999999999999999754 433 3444567777766 4455443
No 44
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=3.4e-23 Score=153.53 Aligned_cols=154 Identities=25% Similarity=0.417 Sum_probs=119.5
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
+|+||+||||+|+...+..++.+.+++++. +.+.+....|...... .... ..+.+.. ......
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~-------------~~~~~~~-~~~~~~ 63 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIA-------------TSFEELL-GYDAEE 63 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHH-------------HHHHHHh-Ccchhh
Confidence 489999999999988889999999998874 3333333333322111 1111 1111111 112245
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
..+||+.++|+.|+++|++++++||+....+...+ +.+ +..+|+.++++++.+ .||+|+.+..+++++++++ +++|
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 56799999999999999999999999999988888 665 778899999988888 9999999999999999999 9999
Q ss_pred EecCHhhHHHHHHcC
Q 024956 171 IEDSVIGVVAGKAAG 185 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G 185 (260)
|||+..|+.+|+++|
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999987
No 45
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=1.4e-23 Score=159.01 Aligned_cols=161 Identities=17% Similarity=0.293 Sum_probs=122.6
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCC---CCh-----hhhhhccCC--CHH----HHHHHHHHHhCCCCCHHHHH
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE---WDG-----REKHKIVGK--TPL----EEAAIIVEDYGLPCAKHEFV 76 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~g~--~~~----~~~~~~~~~~~~~~~~~~~~ 76 (260)
+|+||+||||+|+...+..++..++...+.. +.. .......+. ... ..++.+.+.++++...+ .
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-Y- 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-H-
Confidence 5899999999999988888887776653321 111 111122221 111 25667777777764432 1
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 156 (260)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~ 156 (260)
.+.+...+....++||+.++|+ +++|+||++...+...+ +++++..+|+.+++++.++..||+|+.|..
T Consensus 79 ---~~~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~ 147 (175)
T TIGR01493 79 ---GERLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYEL 147 (175)
T ss_pred ---HHHHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence 2233333446789999999998 37899999999999888 889999999999999998999999999999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
+++++|++|++|+||||+..|+.+|+++
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999999999863
No 46
>PLN02954 phosphoserine phosphatase
Probab=99.89 E-value=8.7e-22 Score=154.99 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=130.8
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh-hhhhccC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR-EKHKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
.+++|+|+|||||||+++. .+..+++.+|...... ....+.+ ....+.+...+..... .. +.+...
T Consensus 9 ~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~----~~~~~~ 77 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP--SL----SQVEEF 77 (224)
T ss_pred HccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC--CH----HHHHHH
Confidence 4578999999999999974 3456667777542222 2223333 2233333333333221 11 222222
Q ss_pred HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc--cccceEE--------eccc----cCCCC
Q 024956 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIV--------GSDE----VRTGK 148 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~--~~f~~i~--------~~~~----~~~~k 148 (260)
+.. ....++||+.++|+.|+++|++++|+|++....++..+ +.+|+. .+|+..+ .+.. ....+
T Consensus 78 ~~~--~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 154 (224)
T PLN02954 78 LEK--RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSG 154 (224)
T ss_pred HHH--ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCc
Confidence 222 13568999999999999999999999999999999888 888886 3554211 1111 12356
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhcccccccccc
Q 024956 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPE 217 (260)
Q Consensus 149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~ 217 (260)
++++.++.++++++. ++++||||+.+|+.+++.+|+.++....+... ......++++++++.++.+.
T Consensus 155 ~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~ 222 (224)
T PLN02954 155 GKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEV 222 (224)
T ss_pred cHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHh
Confidence 788999999998875 68999999999999999988876654332222 22345688999999888654
No 47
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=153.56 Aligned_cols=186 Identities=25% Similarity=0.285 Sum_probs=138.2
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh------------------hccC-CCHHHHHHHHHHHh
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH------------------KIVG-KTPLEEAAIIVEDY 66 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g-~~~~~~~~~~~~~~ 66 (260)
.+++|+|+||++|||+.........+.++.+.+|.+.+..... ...| ....++...+....
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 4578999999999999876666677788888888774443221 1122 24455555444433
Q ss_pred CCCCCH---HHHHHHH-HHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec
Q 024956 67 GLPCAK---HEFVNEV-YSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (260)
Q Consensus 67 ~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~ 141 (260)
...... ++..+.+ ...+.... ......+++.++++.|+++|..+.++||.+...- ..+ ..+++..+||.++.|
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l-~~~~l~~~fD~vv~S 161 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLL-LPLGLSAYFDFVVES 161 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHh-hccCHHHhhhhhhhh
Confidence 222111 1111111 11222211 2355667888999999999999999999888865 455 788999999999999
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcC
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~ 193 (260)
...+..||+|.+|+.+++++++.|++|++|||+. ||+++|+++|+.++++..
T Consensus 162 ~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 162 CEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred hhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcc
Confidence 9999999999999999999999999999999999 899999999999999976
No 48
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.89 E-value=5.6e-21 Score=148.08 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=124.1
Q ss_pred ccEEEEecCCccccCHHH-------HHHHHHHHHHHcCCCCChhhhhhccCCC-HHHHHHHHHHHhCCC---CCHHHHHH
Q 024956 9 MSCVILDLDGTLLNTDGM-------FSEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAIIVEDYGLP---CAKHEFVN 77 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~ 77 (260)
+++|++|+.||+.+-... ....+..+++...........+...+.. .......+......+ ...+.+..
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 478999999999975322 1222223332221111111222222221 122233333332222 22333333
Q ss_pred H-HHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc---CCccccceEEeccccCCCCCChHH
Q 024956 78 E-VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDI 153 (260)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~---gl~~~f~~i~~~~~~~~~kp~~~~ 153 (260)
. +.+.+........++|++.++|++|+++|++++|+||++...++..+ +.. ++..+|+.++... . ..||+|+.
T Consensus 81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~~-~-g~KP~p~~ 157 (220)
T TIGR01691 81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDTT-V-GLKTEAQS 157 (220)
T ss_pred HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEeC-c-ccCCCHHH
Confidence 3 44444443445779999999999999999999999999998877776 543 5777788776532 3 37999999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~ 196 (260)
|..+++++|++|++++||||+..|+.+|+++|+.++++.++.+
T Consensus 158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~ 200 (220)
T TIGR01691 158 YVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPGN 200 (220)
T ss_pred HHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999988543
No 49
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.88 E-value=9e-22 Score=152.35 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCC----------CChHHHHH
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK----------PSPDIFLE 156 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~k----------p~~~~~~~ 156 (260)
+....++||+.++|+.|+++|++++|+|++....++..+ +.+|+..+|+..+..+..+..+ ++++.++.
T Consensus 76 ~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 76 FKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred HHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 345689999999999999999999999999999999888 8889888776665544333333 33468899
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+++++++++++++||||+.+|+.+|+.+|+.++....
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 9999999999999999999999999999998776554
No 50
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.88 E-value=1.1e-21 Score=160.39 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=125.6
Q ss_pred ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh--hccCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024956 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH--KIVGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
.++++|+|||||||+.. +++.++.+..|......... ...|. ...+.+..-...+. ...++. +
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~--g~~~~i-------l 173 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLK--GADANI-------L 173 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhC--CCCHHH-------H
Confidence 46899999999999943 45566666666543322221 11111 11222221111111 011111 1
Q ss_pred HhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc-------eEEecc---ccCCCCCChHH
Q 024956 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDI 153 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~-------~i~~~~---~~~~~kp~~~~ 153 (260)
......++++||+.++++.|++.|++++|+|++.....+..+ +.+++...+. ..+.+. .....++|++.
T Consensus 174 ~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~ 252 (322)
T PRK11133 174 QQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT 252 (322)
T ss_pred HHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence 222235789999999999999999999999999988877666 7788765443 122221 23356899999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~ 209 (260)
++.+++++|++++++++|||+.||+.|++.+|+.+++ +. .+..+..+++.++
T Consensus 253 L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA---kp~Vk~~Ad~~i~ 304 (322)
T PRK11133 253 LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA---KPKVNEQAQVTIR 304 (322)
T ss_pred HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC---CHHHHhhCCEEec
Confidence 9999999999999999999999999999999998776 54 5777788888886
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.87 E-value=2e-21 Score=146.99 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=99.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEec-----------cc
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----------DE 143 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-----------~~ 143 (260)
.+++||+.++|++|+++|++++++||.+. ..+...+ ...++. |+.++.+ +.
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCcccccccCC
Confidence 46889999999999999999999999985 2233344 444554 6666543 24
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc-ccccchhcccccccc
Q 024956 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLR 215 (260)
Q Consensus 144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~-~~~~~~~v~~~~~l~ 215 (260)
....||+|+.|..+++++++++++++||||+..|+++|+++|+.+ +++.++...... ...++++++++.+|.
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 557899999999999999999999999999999999999999998 788886543332 345899999998875
No 52
>PRK06769 hypothetical protein; Validated
Probab=99.87 E-value=7.9e-22 Score=148.35 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=101.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChH--------hHHHHHHhhcCCccccceEE-eccccCCCCCChHHHHHHHHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAKR 160 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~--------~~~~~l~~~~gl~~~f~~i~-~~~~~~~~kp~~~~~~~~l~~ 160 (260)
..++||+.++|++|+++|++++++||.... .....+ +.+|+..+|.... .++..+..||+|+.+..++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 457899999999999999999999998642 122334 5566654433222 345567899999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-------cc-ccccchhccccccccccc
Q 024956 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-------HR-YTAADEVINSLLDLRPEK 218 (260)
Q Consensus 161 l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-------~~-~~~~~~~v~~~~~l~~~~ 218 (260)
++++|++++||||+.+|+.+|+++|+.+|++.++.... .. ...++++++++.|+...+
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l 171 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWI 171 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHH
Confidence 99999999999999999999999999999999864332 11 345889999999987654
No 53
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.87 E-value=1.8e-21 Score=147.93 Aligned_cols=126 Identities=28% Similarity=0.325 Sum_probs=100.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEec-----cccCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-----~~~~~~kp 149 (260)
..++||+.++|++|++.|++++++||... ..+...+ +.+++ .|+.++.+ +..+..||
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcCCCC
Confidence 46889999999999999999999999863 2233344 45565 37776653 34577999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-cccc--chhccccccccccc
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDLRPEK 218 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~--~~~v~~~~~l~~~~ 218 (260)
+|+.+..++++++++|++++||||+.+|+.+|+++|+.++++.++...... ...+ +++++++.++.+.+
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l 176 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQAL 176 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHH
Confidence 999999999999999999999999999999999999999999875433222 3345 78888888877654
No 54
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.85 E-value=8.8e-21 Score=139.13 Aligned_cols=101 Identities=28% Similarity=0.420 Sum_probs=84.1
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEE----eccccCCCCCCh
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIV----GSDEVRTGKPSP 151 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~----~~~~~~~~kp~~ 151 (260)
+++||+.++|+.|+++|++++++||... ..+...+ +.+++... ..++ .++..+..||++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~-~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVD-GVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCcee-EEEECCCCCCCCCCCCCCCH
Confidence 5789999999999999999999999873 3445556 67777521 1222 134556689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+.++.+++++++++++++||||+..|+++|+++|+.+++++.
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD 146 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence 999999999999999999999999999999999999999875
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.84 E-value=1.4e-19 Score=141.35 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=107.4
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (260)
+|+||+||||+|+...+ .+|.. .+...+..+.+. .+.+.+.+.. -..
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~--------------------~~w~~~~~~~---~~~ 112 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQ--------------------VFWEKVNNGW---DEF 112 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcCh--------------------HHHHHHHHhc---ccC
Confidence 89999999999997766 14443 233333222222 1112222111 123
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCC----ChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~----~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
..+.+++.++|++++++|++++++||. ....++..+ +.+|+..+|+.+++++.....||++. ..++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i-- 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI-- 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC--
Confidence 456777999999999999999999998 445566666 88999999999999888777777764 35666665
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~ 197 (260)
++||||+.+|+.+|+++|+.++.+.++...
T Consensus 187 --~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 --RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred --eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999885443
No 56
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.83 E-value=1.7e-20 Score=146.95 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=124.8
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh-hc--cCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KI--VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (260)
++|+||+||||++.+..+ . +++.++. ...+... .+ -.....+.++..++.+.... .+.+.+.+.
T Consensus 4 ~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~-- 70 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSNL-----KEEIIQFLL-- 70 (219)
T ss_pred cEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCc-----hHHHHHHHH--
Confidence 489999999999987654 2 2233332 1111111 11 11134455566666543220 122222222
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--cc--ceEEeccccCCCCCChHH---------
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI--------- 153 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f--~~i~~~~~~~~~kp~~~~--------- 153 (260)
...+++||+.++|+.|+++|++++|+|++....++..+ +.+ +.. ++ +..+.++.....||.|..
T Consensus 71 -~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~ 147 (219)
T PRK09552 71 -ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGC 147 (219)
T ss_pred -hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCC
Confidence 35789999999999999999999999999999999888 655 432 22 333445555556666543
Q ss_pred -HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhcccccccccccc
Q 024956 154 -FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 154 -~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
...++++++.++++++||||+.+|+.+|+.+|+.++ ... .........+...++++.|+...+.
T Consensus 148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~ei~~~l~ 213 (219)
T PRK09552 148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHDVQTELK 213 (219)
T ss_pred chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 457889999999999999999999999999999433 221 1111224457777888888766653
No 57
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=134.43 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=135.5
Q ss_pred cccccEEEEecCCccccCHHHHHHHHH----HHH-HHcCCCCChhhh-----hhccCCCHHHHHHHHHHHhCCCCCHHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLK----TFL-VKYGKEWDGREK-----HKIVGKTPLEEAAIIVEDYGLPCAKHEF 75 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~----~~~-~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 75 (260)
-.++++++||+|+||+..+..+....+ +++ +++|..-+.... ....|. .+..+ ...+...+..
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~----t~aGL-~~~~~~~d~d-- 84 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGL----TMAGL-KAVGYIFDAD-- 84 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhH----HHHHH-HHhcccCCHH--
Confidence 347899999999999998766655544 333 355644322211 111111 11111 1122222222
Q ss_pred HHHHHHHHHhh--hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC------CC
Q 024956 76 VNEVYSMFSDH--LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TG 147 (260)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~------~~ 147 (260)
.+.++.... ++.+++.+-.+.+|-.|+.++ .+++||+...++.+.+ +++|+.++|+.+++.+... .-
T Consensus 85 --eY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vc 159 (244)
T KOG3109|consen 85 --EYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVC 159 (244)
T ss_pred --HHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceee
Confidence 333334333 245889999999999999764 9999999999999999 9999999999998876443 57
Q ss_pred CCChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccc
Q 024956 148 KPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (260)
Q Consensus 148 kp~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l 214 (260)
||.+++|+.+.+..|+. |.+++||+||.++|..|+..|+.++++..... ...+++++.+..+.
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~----~~~~d~~l~~ih~~ 223 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHK----IKGVDYALEQIHNN 223 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeec----ccchHHHHHHhhch
Confidence 99999999999999998 99999999999999999999999999977222 23445555544443
No 58
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.83 E-value=3.5e-20 Score=137.93 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=95.0
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcCCc---------cccceEEeccccCCCCCChHHHHHH
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEA 157 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~gl~---------~~f~~i~~~~~~~~~kp~~~~~~~~ 157 (260)
....++||+.++|+.|+++|++++++||+ ....++..+ +.+++. .+|+.+++++.....||.+.+++.+
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 35788999999999999999999999998 778788888 888988 9999999988776677777777777
Q ss_pred HHHc--CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 024956 158 AKRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (260)
Q Consensus 158 l~~l--~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~ 195 (260)
.+.+ +++|++++||||++.|+.+|+++|+.++++.++.
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~ 160 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGM 160 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCc
Confidence 7777 8999999999999999999999999999998854
No 59
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.83 E-value=1.4e-19 Score=130.58 Aligned_cols=98 Identities=23% Similarity=0.434 Sum_probs=84.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCC--------hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~--------~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
..++|++.++|++|++.|++++++||+. ...+...+ +.+++. ++.++.+. ...||+++.++.+++++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVP--IDVLYACP--HCRKPKPGMFLEALKRF 98 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCC--EEEEEECC--CCCCCChHHHHHHHHHc
Confidence 3578999999999999999999999998 77777777 778875 34444443 56799999999999999
Q ss_pred -CCCCCcEEEEec-CHhhHHHHHHcCCeEEEEc
Q 024956 162 -NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 162 -~~~~~~~~~vGD-~~~Dv~~a~~~G~~~i~~~ 192 (260)
+++|++++|||| +.+|+.+|+.+|+.+|+++
T Consensus 99 ~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 99 NEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999985
No 60
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.82 E-value=3e-19 Score=138.67 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=118.7
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-CCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhh
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYG-LPCAKHEFVNEVYSMFSDH 86 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (260)
+++|+||+||||++ +.|..+.+++|.+... .+ ..+ ......+..-.+... ...+.+++ ...
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i--------~~~ 63 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELR-AT--TRDIPDYDVLMKQRLDILDEHGLGLADI--------QEV 63 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHH-HH--hcCCCCHHHHHHHHHHHHHHcCCCHHHH--------HHH
Confidence 47899999999993 2445556676643211 00 000 111122211111111 01111111 222
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----cCCCCCChHHHHHHHHHcC
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~~~~kp~~~~~~~~l~~l~ 162 (260)
....+++||+.++|+.|+++ ++++++|++....++..+ +.+|+..+|+..+..+. .+..++.|.....+++.++
T Consensus 64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 34578899999999999999 999999999999999888 88899887765433211 1222334455566667777
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch-hcccccccccccc
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE-VINSLLDLRPEKW 219 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~-~v~~~~~l~~~~~ 219 (260)
..+++++||||+.+|+.+++.+|+... ++. ........+++ +++++.++...+.
T Consensus 142 ~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~--~~~~~~~~~~~~~~~~~~el~~~l~ 196 (205)
T PRK13582 142 SLGYRVIAAGDSYNDTTMLGEADAGIL-FRP--PANVIAEFPQFPAVHTYDELLAAID 196 (205)
T ss_pred HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECC--CHHHHHhCCcccccCCHHHHHHHHH
Confidence 778899999999999999999998553 333 11112234444 8999998876654
No 61
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.81 E-value=1.7e-19 Score=133.54 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=89.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCC---------------hHhHHHHHHhhcCCccccceEE-e----ccccCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~gl~~~f~~i~-~----~~~~~~~kp 149 (260)
.+++||+.++|++|+++|++++++||.. ...+...+ +.+|+. |+.++ + ++.....||
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 5789999999999999999999999973 34556666 778886 77554 4 477888999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+++.+..+++++++++++++||||+.+|+.+|+.+|+.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 99999999999999999999999999999999999999999987
No 62
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.79 E-value=1.1e-18 Score=126.49 Aligned_cols=104 Identities=31% Similarity=0.471 Sum_probs=93.4
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC----------------CCC
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPS 150 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~----------------kp~ 150 (260)
.....+++++.++|++|+++|++++++|++....++..+ +..++...++.+++.+..... ||+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPN 98 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCC
Confidence 356789999999999999999999999999999999888 888888888888877655544 999
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
+..+..+++.++..++++++|||+.+|+.+++.+|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 99 PDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 99999999999999999999999999999999999988764
No 63
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.78 E-value=3.9e-18 Score=130.55 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=79.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc--------------------cCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTGK 148 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------------------~~~~k 148 (260)
..+++|++.++|+.|+++|++++++|++....++..+ +.+++..+|+.+++.+. ...+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 4689999999999999999999999999999998888 88899999999886532 12334
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 024956 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
+|++.++++++.. +++++||||+.+|+.+|+.+++-
T Consensus 149 ~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 149 CKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 4667787777664 78999999999999999998753
No 64
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.77 E-value=7.3e-18 Score=130.20 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=85.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----------cCCCCCChHHHHHHHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------VRTGKPSPDIFLEAAK 159 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------~~~~kp~~~~~~~~l~ 159 (260)
.++.|++.++++.+++.|++++++|++....++... +.+|++..+...+..++ ....+-|...++++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999999999999999999998888 99999887765544432 1123446688899999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
.+|+++++++++|||.||+.|.+.+|.+.+.-
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 99999999999999999999999999875543
No 65
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.77 E-value=2.1e-18 Score=128.48 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=82.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChH------------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~------------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~ 159 (260)
++||+.++|++|+++|++++|+||+... .+...+ +.+|+.. +.+++++.....||+++.+..+++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVPI--QVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCCE--EEEEecCCCCCCCCccHHHHHHHH
Confidence 6899999999999999999999998763 355666 7788853 566666666678999999999999
Q ss_pred HcC--CCCCcEEEEecCH--------hhHHHHHHcCCeEEE
Q 024956 160 RLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA 190 (260)
Q Consensus 160 ~l~--~~~~~~~~vGD~~--------~Dv~~a~~~G~~~i~ 190 (260)
+++ +++++++||||+. +|+++|+++|+.+++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999998754
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.76 E-value=4.5e-17 Score=125.26 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=112.9
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCC-HHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHh
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAI---IVEDYGLPCAKHEFVNEVYSMFSD 85 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (260)
.+++||+||||++. .|.++..+.|.. ...... .+.. ..+..+. +++..+++ .+.+ .+
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~--~~~~~~-~~~~~~~~~~~~r~~ll~~~g~~--~~~i--------~~ 62 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGID--ALKATT-RDIPDYDVLMKQRLRILDEHGLK--LGDI--------QE 62 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCc--HHHHHh-cCCcCHHHHHHHHHHHHHHCCCC--HHHH--------HH
Confidence 46899999999964 466666777732 211111 1111 1111111 11111332 2222 22
Q ss_pred hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce--------EEeccccCCCCCChHHHHHH
Q 024956 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDIFLEA 157 (260)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~--------i~~~~~~~~~kp~~~~~~~~ 157 (260)
....++++||+.++++.+++. .+++|+|++....+...+ +.+|+..+|.. .+++... ..++.+......
T Consensus 63 ~~~~i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~ 139 (203)
T TIGR02137 63 VIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA 139 (203)
T ss_pred HHHhCCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence 334568999999999999997 499999999999999888 88999887762 2222111 234444444444
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-cccc-chhcccccccccccc
Q 024956 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA-DEVINSLLDLRPEKW 219 (260)
Q Consensus 158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~-~~~v~~~~~l~~~~~ 219 (260)
+++.+. ++++|||+.||+.|++.+|...++... +.. ...+ ..++.+++||+..+.
T Consensus 140 l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak----~~~~~~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 140 FKSLYY---RVIAAGDSYNDTTMLSEAHAGILFHAP----ENVIREFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred HHhhCC---CEEEEeCCHHHHHHHHhCCCCEEecCC----HHHHHhCCCCCcccCHHHHHHHHH
Confidence 455553 799999999999999999998776544 222 2222 345667777766653
No 67
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.75 E-value=1.5e-18 Score=138.66 Aligned_cols=125 Identities=19% Similarity=0.163 Sum_probs=100.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc---CCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~---~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
++++.+.++.|++.++++++.||.+........ ...+...+|+.+..+... ..+||+|..++.++++++++|++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 567888899999888999999998877665555 556777777766544332 2479999999999999999999999
Q ss_pred EEecCH-hhHHHHHHcCCeEEEEcCCCC-cc---ccccccchhccccccccccc
Q 024956 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPK-QT---HRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 170 ~vGD~~-~Dv~~a~~~G~~~i~~~~~~~-~~---~~~~~~~~~v~~~~~l~~~~ 218 (260)
||||+. +|+.+|+.+|+.++++.++.. .. .....|+++++++.++.+.+
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHH
Confidence 999997 899999999999999988642 21 12456889999999987654
No 68
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.75 E-value=1e-16 Score=124.20 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=114.9
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh------hhhhhcc--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG------REKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+++||+||||++.+... ..+...+.+....... ..+.... +....+..+.+....-...+.+++.....+.
T Consensus 1 ~a~FD~DgTL~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~ 79 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTLF-IFLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDALAGLLEEDVRAIVEEF 79 (202)
T ss_pred CeEEccCCCCCCCchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 37999999999975433 2233333322111000 0011111 1122333333332222233455554444444
Q ss_pred HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce-EEe-------cc---ccCCCCCCh
Q 024956 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVG-------SD---EVRTGKPSP 151 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~-i~~-------~~---~~~~~kp~~ 151 (260)
+...+ ...++|++.++++.++++|++++++|++....++..+ +.+|+..+|.. +.. +. ....++++.
T Consensus 80 ~~~~~-~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~ 157 (202)
T TIGR01490 80 VNQKI-ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV 157 (202)
T ss_pred HHHHH-HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence 44332 3578999999999999999999999999999999888 88898877654 221 11 112345667
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
..+++.+++.++++++++++|||.+|+++++.+|..++..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 7899999999999999999999999999999999876544
No 69
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.75 E-value=2.8e-18 Score=139.11 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=92.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEE---eccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~---~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
++++.++++.|+++|. ++++||.+............+...+|+.+. +.+....+||+|..+..++++++++|++++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6789999999998886 788888876443111102344545555443 344556789999999999999999999999
Q ss_pred EEecCH-hhHHHHHHcCCeEEEEcCCCCcccc-c---------cccchhccccccc
Q 024956 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y---------TAADEVINSLLDL 214 (260)
Q Consensus 170 ~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~-~---------~~~~~~v~~~~~l 214 (260)
||||++ .|+.+|+++|+.++++.+|....+. . ..|+++++++.+|
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 999996 9999999999999999987554322 1 3588888888764
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.74 E-value=1e-17 Score=130.66 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=116.8
Q ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhc--cCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (260)
Q Consensus 12 vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (260)
|+||+||||++.+... . +++.+..+...+....+ -..+..+.++..++...... .+...+.+. ..
T Consensus 2 ~~fDFDgTit~~d~~~-~----~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~---~~ 68 (214)
T TIGR03333 2 IICDFDGTITNNDNII-S----IMKQFAPPEWEALKDGVLSKTLSIQEGVGRMFGLLPSSL-----KEEITSFVL---ET 68 (214)
T ss_pred EEeccCCCCCcchhHH-H----HHHHhCcHHHHHHHHHHHcCCccHHHHHHHHHhhCCCch-----HHHHHHHHH---hc
Confidence 7999999999876432 1 12222211001111111 12235555555555443221 122222222 24
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc---ceEEeccccCCCCCChHHH----------HH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------LE 156 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f---~~i~~~~~~~~~kp~~~~~----------~~ 156 (260)
.+++||+.++++.|+++|++++|+|++....++..+ +.++....+ +.++.++.....+|.+..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 789999999999999999999999999999888888 554433222 2344444444556655443 46
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhcccccccccccc
Q 024956 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
++++++..+++++||||+.+|+.+|+.+++ +.+... ....+....+.....++.++.+.+.
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 777777788999999999999999999998 333221 1111223345666677777665543
No 71
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.74 E-value=5.7e-18 Score=125.84 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=85.8
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
.+..|++.|++++|+|+.....++..+ +.+++..+|+. .||+|+.++.++++++++++++++|||+.||+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 567788899999999999999999999 88999877763 27889999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~ 209 (260)
.+++.+|+..++.+. .+..+..+++++.
T Consensus 112 ~~~~~ag~~~am~nA---~~~lk~~A~~I~~ 139 (169)
T TIGR02726 112 SMMKRVGLAVAVGDA---VADVKEAAAYVTT 139 (169)
T ss_pred HHHHHCCCeEECcCc---hHHHHHhCCEEcC
Confidence 999999999888876 4556677777665
No 72
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.71 E-value=1.9e-16 Score=120.02 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=78.0
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc------------ccCCCCCChHHHHH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPDIFLE 156 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~------------~~~~~kp~~~~~~~ 156 (260)
.+.++|++.++++.++++|++++++|++....++..+ +.+|+..++...+..+ ....+..|+..+++
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 4668999999999999999999999999999999888 8788887665443321 12234455678888
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
+++++++++++++||||+.+|+.+++.+
T Consensus 150 ~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 8999999999999999999999999764
No 73
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.71 E-value=2.7e-17 Score=121.36 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=83.2
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
++++|+++|++++|+||.....+...+ +.+|+..+|+. .+|+++.+..+++++++++++++||||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 799999999999999999999888888 88898766542 36889999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~ 212 (260)
.+++.+|+. +.+... ....+..+++++.+..
T Consensus 106 ~~~~~ag~~-~~v~~~--~~~~~~~a~~i~~~~~ 136 (154)
T TIGR01670 106 PVMEKVGLS-VAVADA--HPLLIPRADYVTRIAG 136 (154)
T ss_pred HHHHHCCCe-EecCCc--CHHHHHhCCEEecCCC
Confidence 999999997 555442 2334555666665543
No 74
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.70 E-value=2.1e-16 Score=130.12 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=85.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCC---------------hHhHHHHHHhhcCCccccceEE-e----ccccCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~gl~~~f~~i~-~----~~~~~~~kp 149 (260)
..++|++.++|++|+++|++++|+||.+ ...+...+ +.+++. |+.++ + +++....||
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~~~~rKP 105 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDNCSCRKP 105 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCcccCCCCCC
Confidence 6789999999999999999999999952 33344455 666773 66654 3 356678999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
++..+..+++.+++++++++||||+.+|+.+|+++|+.+++++.
T Consensus 106 ~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 106 KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999976
No 75
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.70 E-value=8.4e-17 Score=114.91 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcC-------CccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~g-------l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
.++||+.++|++|+++|++++++|++ ....+...+ +..+ +..+|+.+++++. +|+|+.+..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 57899999999999999999999999 777777777 7677 7888888887753 578899999999999
Q ss_pred --CCCCcEEEEecCHhhHHHHHH
Q 024956 163 --MEPSSSLVIEDSVIGVVAGKA 183 (260)
Q Consensus 163 --~~~~~~~~vGD~~~Dv~~a~~ 183 (260)
+.|++++||||++.|+...+.
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999877653
No 76
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.69 E-value=6.9e-17 Score=126.18 Aligned_cols=90 Identities=31% Similarity=0.430 Sum_probs=77.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
.+++|++.++|++|++.|++++++|+.......... +.+|+. +..+.+... +||.+..+..+++.+++++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccc-cccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 477899999999999999999999999888888787 888883 333332222 78888899999999999999999
Q ss_pred EEecCHhhHHHHHHcC
Q 024956 170 VIEDSVIGVVAGKAAG 185 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G 185 (260)
||||+.||+.|++.+|
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999986
No 77
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.68 E-value=6e-16 Score=120.86 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=78.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCC----hHhHHHHHHhhcCC--ccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~----~~~~~~~l~~~~gl--~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
...++||+.++|+.|+++|++++++||+. ....+..+ +.+|+ ..+|+.+++++.. .|+++. ..+++++
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~K~---~~l~~~~ 185 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYTKT---QWLKKKN 185 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCCHH---HHHHhcC
Confidence 47789999999999999999999999964 33444444 67899 7888888887653 556553 3556666
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~ 196 (260)
+ ++||||+.+|+.+|+++|+.++.+.++..
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 5 89999999999999999999999998644
No 78
>PRK10444 UMP phosphatase; Provisional
Probab=99.67 E-value=1.6e-16 Score=126.03 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=62.4
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL 214 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l 214 (260)
+....+||++..+..+++++++++++++||||++ +|+.+|+++|+.++++.+|....+. ...|+++++++.++
T Consensus 168 ~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 168 KPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred CccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 3444689999999999999999999999999997 8999999999999999987554333 24688999998886
No 79
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=109.31 Aligned_cols=92 Identities=24% Similarity=0.397 Sum_probs=81.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
..|.+.+.+.+++.+|++++|+||+....+.... ..+|+ +.++. ..||.+..|+++++++++++++|+||
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v----~fi~~-----A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGV----PFIYR-----AKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCC----ceeec-----ccCccHHHHHHHHHHcCCChhHEEEE
Confidence 3456678889999999999999999999888777 77776 45543 48999999999999999999999999
Q ss_pred ecCH-hhHHHHHHcCCeEEEEcC
Q 024956 172 EDSV-IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 172 GD~~-~Dv~~a~~~G~~~i~~~~ 193 (260)
||.. .|+.+++.+|+.+|+|..
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 9999 899999999999999976
No 80
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.65 E-value=2.8e-16 Score=125.19 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=63.8
Q ss_pred ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc--c--cccchhccc
Q 024956 136 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR--Y--TAADEVINS 210 (260)
Q Consensus 136 ~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~--~--~~~~~~v~~ 210 (260)
+...+.+....+||++..++.+++++++++++++||||++ +|+.+|+++|+.++++.++...... . ..|++++++
T Consensus 166 ~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~ 245 (249)
T TIGR01457 166 EVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSS 245 (249)
T ss_pred HHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCC
Confidence 3344555666789999999999999999999999999997 8999999999999999986543322 1 357788877
Q ss_pred cccc
Q 024956 211 LLDL 214 (260)
Q Consensus 211 ~~~l 214 (260)
+.++
T Consensus 246 l~~~ 249 (249)
T TIGR01457 246 LAEW 249 (249)
T ss_pred hhhC
Confidence 7654
No 81
>PRK11590 hypothetical protein; Provisional
Probab=99.64 E-value=1.7e-14 Score=112.24 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=105.3
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh-hhhhhccCCCHHHHHHH-------HHHHhCCCCCHHHHHHHH
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAI-------IVEDYGLPCAKHEFVNEV 79 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 79 (260)
..|+++||+||||++.+ ........++++.+..... ......+|.......+. ++-......+.+++ +.+
T Consensus 5 ~~k~~iFD~DGTL~~~d-~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 82 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD-MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARL-QAL 82 (211)
T ss_pred cceEEEEecCCCCcccc-hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHH-HHH
Confidence 45799999999999543 3333333333666644322 34444455433322111 11111111123332 233
Q ss_pred HHHHHhhhc-cCCCCccHHHHH-HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc--------ccCCCCC
Q 024956 80 YSMFSDHLC-KVKALPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--------EVRTGKP 149 (260)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~~~l-~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~--------~~~~~kp 149 (260)
.+.+.+.+. ...++|++.+.| +.+++.|++++|+|++....++..+ ..+++.. .+.+++++ ..+...-
T Consensus 83 ~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~ 160 (211)
T PRK11590 83 EADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTLRCL 160 (211)
T ss_pred HHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCccCC
Confidence 333333232 257799999999 5788899999999999999998888 7777522 23333322 1111111
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
..+=...+.+.++.+.+.+.+.|||.+|+.|...++.+.+ +|.
T Consensus 161 g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~-vnp 203 (211)
T PRK11590 161 GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWR-VTP 203 (211)
T ss_pred ChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEE-ECc
Confidence 1222333444456677788999999999999999998654 443
No 82
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.64 E-value=8.3e-17 Score=122.21 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=86.1
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
.++.|+++|++++++|+.....+...+ +.+|+..+|+ + .++++..+..+++++++++++++||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 667777899999999999999998888 8888876654 1 35677999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCccccccccchhcc------cccccccccc
Q 024956 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN------SLLDLRPEKW 219 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~------~~~~l~~~~~ 219 (260)
.+++.+|+.++ +.. ........+++++. .+.++.+.++
T Consensus 126 ~~a~~aG~~~~-v~~--~~~~~~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 126 PVMEKVGLSVA-VAD--AHPLLLPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred HHHHHCCCeEe-cCC--hhHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence 99999999854 432 22333566778875 5667666654
No 83
>PLN02645 phosphoglycolate phosphatase
Probab=99.64 E-value=2e-16 Score=130.01 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=78.8
Q ss_pred cEEEEeCCChHh-HHHHHHhhcCCccccceEEecccc---CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHH
Q 024956 109 PMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKA 183 (260)
Q Consensus 109 ~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i~~~~~~---~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~ 183 (260)
..+++||.+... ....+ ...|...+|+.+...... ..+||+|..+..+++++++++++++||||++ +|+.+|++
T Consensus 188 ~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~ 266 (311)
T PLN02645 188 CLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQN 266 (311)
T ss_pred CEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHH
Confidence 466666666533 11122 233444455555544332 2469999999999999999999999999998 99999999
Q ss_pred cCCeEEEEcCCCCcccc------ccccchhccccccccccc
Q 024956 184 AGMEVVAVPSLPKQTHR------YTAADEVINSLLDLRPEK 218 (260)
Q Consensus 184 ~G~~~i~~~~~~~~~~~------~~~~~~~v~~~~~l~~~~ 218 (260)
+|+.++++.+|....+. ...|+++++++.+|.+.+
T Consensus 267 aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~ 307 (311)
T PLN02645 267 GGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLK 307 (311)
T ss_pred cCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHh
Confidence 99999999886543322 145899999999887654
No 84
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.62 E-value=5.8e-14 Score=101.57 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=94.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
+..++|++.+.|++.++.|++++|+|+++...++-.+. ....+..+|+..+... .-.|....-|.+++...|++|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt--iG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT--IGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc--ccccccchhHHHHHHhcCCCch
Confidence 57899999999999999999999999999887664441 2223556666666542 2255666889999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212 (260)
Q Consensus 167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~ 212 (260)
+++|+.|+++.+.+|+.+|+.++++.+..+.+-.......+.+++.
T Consensus 179 eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred heEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 9999999999999999999999999885544443444455555554
No 85
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.61 E-value=4.9e-15 Score=120.04 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=76.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCh-Hh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHR-AT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~-~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
++++.++++.++..+..+.++++... .. ....+.+.+++...+.....-+....+..|+.+++.+++++|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 45666777777766666666665432 11 112221334432111100011333445567799999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
++|||+.||++|++.+|+.+++-+. .+..+..|++++++..+
T Consensus 219 i~~GD~~NDi~m~~~ag~~vamgna---~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGLGVAMGNA---DDAVKARADLVIGDNTT 260 (272)
T ss_pred EEeCCChhhHHHHHhcCceEEecCc---hHHHHHhCCEEEecCCC
Confidence 9999999999999999986555443 45557778888876554
No 86
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.60 E-value=1.4e-14 Score=108.71 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=82.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCC-hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~-~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
..++|++.++|++|++.|++++++||+. ...+...+ +.+++..+ .+..||+++.+..++++++++++++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~~ 111 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQV 111 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHHE
Confidence 3568899999999999999999999998 45555454 55665322 1347999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCcc
Q 024956 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (260)
Q Consensus 169 ~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~ 198 (260)
+||||+. .|+.+|+++|+.+++++++....
T Consensus 112 l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 112 AVVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred EEECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 9999998 79999999999999999865443
No 87
>PRK08238 hypothetical protein; Validated
Probab=99.56 E-value=3.7e-14 Score=121.96 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=93.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
..++.|++.+.+++++++|++++++|++....++..+ +.+|+ |+.++++++....||++.. ..+.+.++ .+++
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~ 142 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGF 142 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCe
Confidence 3567899999999999999999999999999999888 77877 8999999877666665432 23445554 3568
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccc---cccCCCCCcccccCC
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP---EKWGLPPFQDWIEGT 231 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~---~~~~l~~~~~~~~~~ 231 (260)
+|+||+.+|+.+++.+| ..+.++.+..-........+.+..+..... ...++-...+|+.+.
T Consensus 143 ~yvGDS~~Dlp~~~~A~-~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~ 207 (479)
T PRK08238 143 DYAGNSAADLPVWAAAR-RAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNL 207 (479)
T ss_pred eEecCCHHHHHHHHhCC-CeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHH
Confidence 99999999999999999 566777632222222233344444433332 233444556665543
No 88
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.7e-14 Score=114.13 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=65.0
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhcccccccccccc
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l~~~~~ 219 (260)
-.+||++.+++.+++.++.++++++||||++ +||.+++++|+.+++|.+|....+. ...++++++++.++...+.
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~~~ 266 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITALK 266 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhhhh
Confidence 4799999999999999999999999999999 7999999999999999997553333 4568899999988776554
No 89
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.55 E-value=2.8e-13 Score=105.33 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=113.3
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-CCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhhhc
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHLC 88 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (260)
+|+||+|+||+|.+... .+++.++.......+..... ....+.+..+++.+... .+.++ +.+.+.
T Consensus 2 LvvfDFD~TIvd~dsd~-----~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~--------I~~~l~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDD-----WVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPED--------IRDALR 68 (234)
T ss_pred EEEEeCCCCccCCccHH-----HHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHH--------HHHHHH
Confidence 58999999999875432 12334443332233322222 23445556666554321 22222 233346
Q ss_pred cCCCCccHHHHHHHH--HHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----c-----------CC-CCC-
Q 024956 89 KVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----V-----------RT-GKP- 149 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l--~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~-----------~~-~kp- 149 (260)
.+++.|++.++++.+ .+.|+.++|+|++...+++..| +..|+...|+.|++... . .+ ..|
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 789999999999999 4579999999999999999999 99999999988876421 0 01 112
Q ss_pred ---ChHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 ---SPDIFLEAAKR---LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ---~~~~~~~~l~~---l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
|...++++++. -|++.++++||||+.||+-++..++-.-+.+.+
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR 197 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence 34666777766 367889999999999999999988765444443
No 90
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.54 E-value=5.4e-15 Score=116.80 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=57.5
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
+....+.+|+.+++.+++.++++++++++|||+.||++|++.+|+.+++-|. .+..+..+++++.+..+
T Consensus 150 ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na---~~~vk~~a~~v~~~n~~ 218 (230)
T PRK01158 150 HIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANA---DEELKEAADYVTEKSYG 218 (230)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCc---cHHHHHhcceEecCCCc
Confidence 3445667788999999999999999999999999999999999998877766 56667778887765443
No 91
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.54 E-value=3.5e-14 Score=103.89 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=117.9
Q ss_pred cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
....++|+||+|-|++.. +.+.++....|..-...+. +..++... .+-+.+..+..+- ...........
T Consensus 13 ~~~~~aVcFDvDSTvi~e-----EgIdelA~~~G~~~~Va~~T~rAMng~~-~F~eaL~~Rl~ll---qp~~~qv~~~v- 82 (227)
T KOG1615|consen 13 WRSADAVCFDVDSTVIQE-----EGIDELAAYCGVGEAVAEVTRRAMNGEA-DFQEALAARLSLL---QPLQVQVEQFV- 82 (227)
T ss_pred HHhcCeEEEecCcchhHH-----hhHHHHHHHhCchHHHHHHHHHHhCCCC-cHHHHHHHHHHHh---cccHHHHHHHH-
Confidence 346789999999999864 3445555555543222222 22222211 1222233333221 11111111111
Q ss_pred hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--ccce--------EEec-c---ccCCCCCC
Q 024956 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSV--------IVGS-D---EVRTGKPS 150 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f~~--------i~~~-~---~~~~~kp~ 150 (260)
.-+..++.||+++++..|+++|.+++++|++....+.... +.+|+.. .+.. -+.+ + ....+--+
T Consensus 83 -~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggK 160 (227)
T KOG1615|consen 83 -IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGK 160 (227)
T ss_pred -hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCcc
Confidence 1246889999999999999999999999999999988877 8888764 2321 1111 1 11122234
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR 215 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~ 215 (260)
++.+..+++ +.+.+.++||||+.+|+++... +..++.+....-....+..+.+.+.++..|.
T Consensus 161 a~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk~nak~~~~~f~~L~ 222 (227)
T KOG1615|consen 161 AEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVKANAKWYVTDFYVLG 222 (227)
T ss_pred HHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhHhccHHHHHHHHHHc
Confidence 577777777 7788999999999999998777 4444444332223444666777777776654
No 92
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.52 E-value=6.7e-14 Score=114.97 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=93.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEecc-------ccCCCCCChHHHHHHHHHc
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~-------~~~~~kp~~~~~~~~l~~l 161 (260)
..++|++.+++++|+++|++++++|+++....+..+ +.+++.. +|+.+++.+ ..+..||+|..+..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 357899999999999999999999999999888888 8888886 899888887 3556899999999999999
Q ss_pred CC-CCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 162 NM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 162 ~~-~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
+. ++++++||||+.+|+.+|+++|+.++++.+|
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 88 6799999999999999999999999999774
No 93
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.52 E-value=2.7e-13 Score=100.52 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=92.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEecc-----ccCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGSD-----EVRTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~~-----~~~~~kp 149 (260)
..+.|++.+.+..|++.|++++++||.+- ..+...+ +..|. .|+.++.+. .+.+.||
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDCRKP 106 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcccCC
Confidence 46789999999999999999999999522 2233444 44444 467776653 3578999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhcccccccc
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l~ 215 (260)
++..+..+++++++++++.++|||+..|+++|.++|+..+.+..+...... ....++...++.++.
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 999999999999999999999999999999999999998877763222211 223455555555544
No 94
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.50 E-value=2e-12 Score=102.75 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=80.0
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE------EeccccCCCCCCh---------HH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------DI 153 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i------~~~~~~~~~kp~~---------~~ 153 (260)
.+++.||+.++++.|+++|++++|+|++....++..+ +..|+...+..+ +..+....++|.| ..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 6889999999999999999999999999999999999 778886555555 4344444556666 56
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 024956 154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 154 ~~~~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
++...+.++ .++++|++|||+.+|+.||..+
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 667888888 8999999999999999998877
No 95
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.49 E-value=2.9e-14 Score=112.28 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=70.3
Q ss_pred EEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE
Q 024956 110 MALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188 (260)
Q Consensus 110 i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~ 188 (260)
..+.+..........+ +.++....+ ......+..+...+|+..++.++++++++++++++|||+.||+.|++.+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~v 188 (225)
T TIGR01482 110 VKMRYGIDVDTVREII-KELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGV 188 (225)
T ss_pred EEEeecCCHHHHHHHH-HhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceE
Confidence 3444444555555555 555542110 00112234456778889999999999999999999999999999999999988
Q ss_pred EEEcCCCCccccccccchhcccccc
Q 024956 189 VAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
++-|. .+..+..+++++.+..+
T Consensus 189 am~Na---~~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 189 AVANA---QPELKEWADYVTESPYG 210 (225)
T ss_pred EcCCh---hHHHHHhcCeecCCCCC
Confidence 87766 56667788888765444
No 96
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.48 E-value=6.7e-14 Score=102.61 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=85.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.+.++||+.++|++|+ ++++++|+|++....++..+ +.+++.. +|+.+++++++...||. +.+.+++++.+|++
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence 4678999999999998 56999999999999999888 8888854 56999999999888886 89999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEE
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
|++|||+++|+.++..+|+..-
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred EEEEECCHHHhhcCccCEEEec
Confidence 9999999999999999987543
No 97
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.48 E-value=1.1e-13 Score=114.39 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=81.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh----cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~----~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
+++++.++|++|+++|+.++++|++....+...+ +. +++..+|+.+... .||+++.+..+++++|+.+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 4789999999999999999999999999999888 76 7788888887554 579999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCe
Q 024956 168 SLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~ 187 (260)
++||||++.|+.+++...-.
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997753
No 98
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.48 E-value=4.1e-12 Score=98.49 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=67.4
Q ss_pred cCCCCccHHHHHH-HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc----c----cCCCCCChHHHHHHHH
Q 024956 89 KVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----E----VRTGKPSPDIFLEAAK 159 (260)
Q Consensus 89 ~~~~~~~~~~~l~-~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~----~----~~~~kp~~~~~~~~l~ 159 (260)
...++|++.+.|+ .++++|++++|+|++....++... +..++... +.+++++ + .+...-..+=...+.+
T Consensus 92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 3468999999996 788899999999999999888777 55444221 2233322 1 1111111122333334
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
.++.+.+.+.+.|||.+|+.|...++.+.+.
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRV 200 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEE
Confidence 4565667889999999999999999986543
No 99
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.46 E-value=2.8e-12 Score=105.90 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=59.3
Q ss_pred CCCCCChHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc-cc--ccccchh
Q 024956 145 RTGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HR--YTAADEV 207 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l--------~~-----~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~-~~--~~~~~~~ 207 (260)
..+||++..|+.+++.+ +. ++++++||||++ +|+.+|+++|+.++++.+|.... +. ...|+++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 35999999999988877 43 457999999999 89999999999999999862222 22 2457899
Q ss_pred ccccccccccc
Q 024956 208 INSLLDLRPEK 218 (260)
Q Consensus 208 v~~~~~l~~~~ 218 (260)
++++.|+...+
T Consensus 310 v~~l~e~~~~i 320 (321)
T TIGR01456 310 VNDVFDAVTKI 320 (321)
T ss_pred ECCHHHHHHHh
Confidence 99999887655
No 100
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.45 E-value=4.1e-13 Score=106.22 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=45.5
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCeEEEEcC
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~-~~vGD~~-~Dv~~a~~~G~~~i~~~~ 193 (260)
..+||++..++.++++++++++++ +||||++ +|+.+|+.+|+.++++.+
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence 367999999999999999999887 9999999 899999999999999875
No 101
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.45 E-value=5.3e-14 Score=109.98 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=70.1
Q ss_pred EEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956 110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 110 i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
+++++..........+ +..++..+... ..-+..+.+..|...++.+++.++++++++++|||+.||++|++.+|+.++
T Consensus 110 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va 187 (215)
T TIGR01487 110 VIMREGKDVDEVREII-KERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA 187 (215)
T ss_pred EEecCCccHHHHHHHH-HhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence 3344555555566566 55555432221 112333456677899999999999999999999999999999999999888
Q ss_pred EEcCCCCccccccccchhccccc
Q 024956 190 AVPSLPKQTHRYTAADEVINSLL 212 (260)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~~ 212 (260)
+.+. .++.+..+++++++..
T Consensus 188 m~na---~~~~k~~A~~v~~~~~ 207 (215)
T TIGR01487 188 VANA---DDQLKEIADYVTSNPY 207 (215)
T ss_pred cCCc---cHHHHHhCCEEcCCCC
Confidence 7766 6666777888876543
No 102
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.44 E-value=2.5e-13 Score=87.60 Aligned_cols=69 Identities=32% Similarity=0.484 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccc
Q 024956 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL 214 (260)
Q Consensus 146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l 214 (260)
++||+|..+..+++++++++++++||||+ ..|+.+|+++|+.++++.++....+. ...|+++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 69999999999999999997655433 35889999999875
No 103
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.43 E-value=2.8e-11 Score=99.23 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc-C-------CccccceEEeccc-----------------c
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDE-----------------V 144 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~-g-------l~~~f~~i~~~~~-----------------~ 144 (260)
+...|++.++|++|+++|++++|+||+....+...+ +.+ + +..+||.++++.. .
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence 567999999999999999999999999999999888 664 6 8899999887532 0
Q ss_pred CCCCCC-------h-----HHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956 145 RTGKPS-------P-----DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (260)
Q Consensus 145 ~~~kp~-------~-----~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~ 193 (260)
+..++. + .....+.+.+++.+++++||||++ .|+..++ .+|+.++++..
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 111111 1 225678888999999999999999 8999998 99999999965
No 104
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.41 E-value=1.6e-12 Score=96.03 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=72.6
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcCCc----------cccceEEeccccCCCCCChHHHHH
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE 156 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~gl~----------~~f~~i~~~~~~~~~kp~~~~~~~ 156 (260)
..+.++|++.++|++|+++|+++++.|-+ .++.+++.| +.+++. .+|+..-... -++...|+.
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~ 115 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRR 115 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEESS-----S-HHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhheec-----CchHHHHHH
Confidence 46889999999999999999999999954 566788888 888988 7777643322 266789999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
+.+..|+++++++||+|...++......|+.++++..|
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~G 153 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDG 153 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCC
Confidence 99999999999999999999999999999999999874
No 105
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.41 E-value=8.6e-13 Score=114.07 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=79.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCh------------HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~------------~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~ 159 (260)
++|++.+.|++|++.|++++|+||... ..+...+ +.+|+. |+.+++.+.....||++..+..+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 579999999999999999999999766 3456666 777874 8888888888889999999999999
Q ss_pred HcC----CCCCcEEEEecCHhhHHHHHHcCC
Q 024956 160 RLN----MEPSSSLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 160 ~l~----~~~~~~~~vGD~~~Dv~~a~~~G~ 186 (260)
+++ +++++++||||+..|+.+++.+|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999988887776664
No 106
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.40 E-value=3.4e-13 Score=95.49 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=79.1
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
-++.|.+.|++++|+|+.....++.+. +.+|+..++..+ +.+...++.+++++++.++++.|+||..+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRA-KDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 567788889999999999999999999 888886544333 2355899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~ 209 (260)
...+.+|+++...+. .+.....++++..
T Consensus 113 pvm~~vGls~a~~dA---h~~v~~~a~~Vt~ 140 (170)
T COG1778 113 PVMEKVGLSVAVADA---HPLLKQRADYVTS 140 (170)
T ss_pred HHHHHcCCccccccc---CHHHHHhhHhhhh
Confidence 999999998766554 4444555555543
No 107
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.39 E-value=2.6e-13 Score=109.42 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=56.5
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
..+.+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|. .+..+..++++..+..+
T Consensus 183 i~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na---~~~~k~~A~~vt~~n~~ 250 (264)
T COG0561 183 ITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA---DEELKELADYVTTSNDE 250 (264)
T ss_pred EecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC---CHHHHhhCCcccCCccc
Confidence 345777888999999999999999999999999999999999998888777 56666777765555443
No 108
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.39 E-value=2.2e-13 Score=110.34 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=56.8
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch--hcccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLD 213 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~v~~~~~ 213 (260)
+..+.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|. .++.+..+++ ++.+..+
T Consensus 181 eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na---~~~vK~~A~~~~v~~~n~e 251 (272)
T PRK15126 181 EVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNA---MPQLRAELPHLPVIGHCRN 251 (272)
T ss_pred EeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCC---hHHHHHhCCCCeecCCCcc
Confidence 3455667788999999999999999999999999999999999998887766 6666777765 5555443
No 109
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.36 E-value=1.9e-11 Score=98.98 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=44.6
Q ss_pred cCCCCCChHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 144 VRTGKPSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 144 ~~~~kp~~~~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.+.. .+...++++++.+++++ +++++|||+.||+.|++.+|+.+++-|.
T Consensus 186 ~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 186 LGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred eCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 3445 67789999999999999 9999999999999999999999998887
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.33 E-value=9.4e-13 Score=106.55 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=59.7
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
+-.+.+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|. .+..+..|++++.+..+
T Consensus 189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~vt~~n~~ 257 (270)
T PRK10513 189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA---IPSVKEVAQFVTKSNLE 257 (270)
T ss_pred EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc---cHHHHHhcCeeccCCCc
Confidence 3456677888999999999999999999999999999999999998888776 67778888888876544
No 111
>PRK10976 putative hydrolase; Provisional
Probab=99.32 E-value=1.4e-11 Score=99.53 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=57.1
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccc--hhcccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLLD 213 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~--~~v~~~~~ 213 (260)
+..+.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|. .+..+..++ +++.+..|
T Consensus 183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~~~v~~~n~e 253 (266)
T PRK10976 183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA---HQRLKDLLPELEVIGSNAD 253 (266)
T ss_pred EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC---cHHHHHhCCCCeecccCch
Confidence 3445667788999999999999999999999999999999999998888877 666677765 56665444
No 112
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.30 E-value=1.6e-11 Score=94.21 Aligned_cols=85 Identities=22% Similarity=0.388 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc--C--------CCC---CChHHHHHH---
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV--R--------TGK---PSPDIFLEA--- 157 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~--~--------~~k---p~~~~~~~~--- 157 (260)
|++.++++.+++.|++++|+|++....++..+ +.+|+.... +++.+.. + .+. -|...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 56669999999999999999999999998888 788876521 2221110 0 000 145566666
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHH
Q 024956 158 AKRLNMEPSSSLVIEDSVIGVVAGK 182 (260)
Q Consensus 158 l~~l~~~~~~~~~vGD~~~Dv~~a~ 182 (260)
... +.+...+++||||.+|+.|++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 344 788999999999999999986
No 113
>PLN02887 hydrolase family protein
Probab=99.29 E-value=3.5e-12 Score=111.84 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=59.6
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
+.+..+-.|..+++.+++.+|++++++++|||+.||++|.+.+|+.+++-|. .+..+..|++++.+..+
T Consensus 500 EI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA---~eeVK~~Ad~VT~sNdE 568 (580)
T PLN02887 500 EIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNG---AEKTKAVADVIGVSNDE 568 (580)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCC---CHHHHHhCCEEeCCCCc
Confidence 3455677788999999999999999999999999999999999998888876 67778888988876554
No 114
>PTZ00445 p36-lilke protein; Provisional
Probab=99.27 E-value=7.5e-11 Score=88.76 Aligned_cols=135 Identities=13% Similarity=0.199 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC---------CCCccHHHHHHHHHHCCCcEEEEeCCChHh--------
Q 024956 58 EAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV---------KALPGANRLIKHLSCHGVPMALASNSHRAT-------- 120 (260)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~-------- 120 (260)
.+-..+++.|+..-.-++...+.......+... ...|++..++.+|++.|++++|+|-++...
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~ 112 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPR 112 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcc
Confidence 344455666665333333344433222222222 367899999999999999999999877644
Q ss_pred -------HHHHHHhhcCCccccceEEecc-----------ccCCCCCChHH--H--HHHHHHcCCCCCcEEEEecCHhhH
Q 024956 121 -------IESKISYQHGWNESFSVIVGSD-----------EVRTGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 121 -------~~~~l~~~~gl~~~f~~i~~~~-----------~~~~~kp~~~~--~--~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
++..+ +..+.....+.+++.. .++..||+|+. | ++++++.|+.|++++||+|+..++
T Consensus 113 ~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NV 191 (219)
T PTZ00445 113 YISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNC 191 (219)
T ss_pred eechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHH
Confidence 45555 5444444444444321 24788999999 8 999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcC
Q 024956 179 VAGKAAGMEVVAVPS 193 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~ 193 (260)
.+|+.+|+.++.+..
T Consensus 192 eaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 192 KNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHCCCEEEEcCC
Confidence 999999999999975
No 115
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=91.37 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=64.1
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc--cc--ccccchhccccccccccc
Q 024956 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT--HR--YTAADEVINSLLDLRPEK 218 (260)
Q Consensus 144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~--~~--~~~~~~~v~~~~~l~~~~ 218 (260)
...+||++.+|+.+++.+|++|++++||||.. .|+-.|..+||..+.+..|...+ +. ...|+..++++.+...+|
T Consensus 177 ~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I 256 (262)
T KOG3040|consen 177 TVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI 256 (262)
T ss_pred EEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence 34799999999999999999999999999999 59999999999999999864443 22 456788888888876665
Q ss_pred c
Q 024956 219 W 219 (260)
Q Consensus 219 ~ 219 (260)
.
T Consensus 257 ~ 257 (262)
T KOG3040|consen 257 I 257 (262)
T ss_pred H
Confidence 4
No 116
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.24 E-value=2e-10 Score=91.41 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=65.4
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccc-cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~-f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
...++||+.++|+.|+++|++++++|++.... ....+ +.+|+..+ ++.++..++ .++++.....+.+..++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I- 190 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI- 190 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE-
Confidence 56789999999999999999999999987543 34566 77888754 356665542 24566777777776666
Q ss_pred CCcEEEEecCHhhHHHH
Q 024956 165 PSSSLVIEDSVIGVVAG 181 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a 181 (260)
+++|||+.+|+..+
T Consensus 191 ---vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 191 ---VLLFGDNLLDFDDF 204 (266)
T ss_pred ---EEEECCCHHHhhhh
Confidence 89999999999654
No 117
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.22 E-value=5e-11 Score=94.79 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=74.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH--HHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~--~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.++||+.++|++|+++|++++++||+.+.... ..+ +.+|+.. +|+.++++..... ..+..++++++.++++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGI 97 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence 35789999999999999999999998877655 677 8899987 8999998865432 4667777888889999
Q ss_pred EEEEecCHhhHHHHHHcCC
Q 024956 168 SLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~ 186 (260)
+++|||+..|+......+.
T Consensus 98 ~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 98 IYLLGHLENDIINLMQCYT 116 (242)
T ss_pred EEEeCCcccchhhhcCCCc
Confidence 9999999999888766654
No 118
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.21 E-value=1.8e-11 Score=97.33 Aligned_cols=98 Identities=23% Similarity=0.388 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE--EeccccCCCCCChHHHHHHHHHcCCC-CCcEE
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL 169 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i--~~~~~~~~~kp~~~~~~~~l~~l~~~-~~~~~ 169 (260)
++++.++++.+.++|+++ ++||.+.......+ ...+...++..+ .+.+....+||++..++.++++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 578899999998889987 78998887765444 556665556544 45555568999999999999999875 57999
Q ss_pred EEecCH-hhHHHHHHcCCeEEEEc
Q 024956 170 VIEDSV-IGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 170 ~vGD~~-~Dv~~a~~~G~~~i~~~ 192 (260)
||||++ +|+.+|+++|+.++++.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 999995 99999999999999885
No 119
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.20 E-value=5.3e-11 Score=96.32 Aligned_cols=52 Identities=8% Similarity=-0.089 Sum_probs=46.5
Q ss_pred cccCCCCCChHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~---~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+....+-.|..+++.+++.+|+ ++++++.|||+.||++|.+.+|..+++-+.
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~ 234 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGL 234 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCC
Confidence 4456677888999999999999 999999999999999999999998887765
No 120
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.19 E-value=2.2e-11 Score=97.81 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=55.9
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
-.+.+..|..+++.+++.++++++++++|||+.||+.|++.+|+.+++.+. .+..+..+++++.+..+
T Consensus 182 I~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na---~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 182 ITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNA---DEELKALADYVTDSNNE 249 (256)
T ss_pred ecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCc---hHHHHHhCCEEecCCCC
Confidence 345667788999999999999999999999999999999999998777544 45556777777776544
No 121
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.17 E-value=4.6e-10 Score=82.70 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHCCC--cEEEEeCCC-------hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC--
Q 024956 95 GANRLIKHLSCHGV--PMALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM-- 163 (260)
Q Consensus 95 ~~~~~l~~l~~~g~--~i~i~s~~~-------~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~-- 163 (260)
.+.+.++++++.+. ++.|+||+. ...++ .+++.+|+. .+.. ...|| ..++++++.++.
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~-~~~~~lgIp----vl~h----~~kKP--~~~~~i~~~~~~~~ 131 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAE-ALEKALGIP----VLRH----RAKKP--GCFREILKYFKCQK 131 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHH-HHHHhhCCc----EEEe----CCCCC--ccHHHHHHHHhhcc
Confidence 34456666667654 499999984 33343 333666642 2211 13566 566666666654
Q ss_pred ---CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCC
Q 024956 164 ---EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 164 ---~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~ 194 (260)
.|+++++|||.+ .|+.+++.+|+.++++..|
T Consensus 132 ~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 132 VVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred CCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 599999999999 8999999999999999764
No 122
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.15 E-value=3.5e-10 Score=83.57 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=66.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCh--------------HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHR--------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~--------------~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~ 157 (260)
..|++.+.|++|.+.|+.++|+||... ..+...+ +.+++. +...++.....+.||++..+..+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhHHHHH
Confidence 345799999999999999999998721 1122233 445554 33444445557899999999999
Q ss_pred HHHcCC----CCCcEEEEecC-----------HhhHHHHHHcCCeEE
Q 024956 158 AKRLNM----EPSSSLVIEDS-----------VIGVVAGKAAGMEVV 189 (260)
Q Consensus 158 l~~l~~----~~~~~~~vGD~-----------~~Dv~~a~~~G~~~i 189 (260)
++.++. +.++++||||. -.|...|.++|+++.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 999874 88999999996 578999999999754
No 123
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.15 E-value=7.6e-10 Score=86.87 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=39.9
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
+..-.|+.+++.+++.+|++++++++|||+.||++|++.+|..++
T Consensus 175 ~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 175 GASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 344456789999999999999999999999999999999998765
No 124
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.14 E-value=2.3e-10 Score=90.69 Aligned_cols=61 Identities=13% Similarity=-0.051 Sum_probs=50.7
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccc
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD 205 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~ 205 (260)
+..+...+|+.+++.++++++++++++++|||+.||+.|++.+|...++-+. .++.+..++
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na---~~~~k~~a~ 212 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNH---DPELEGLRH 212 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCC---cHHHHHhhc
Confidence 4556788899999999999999999999999999999999999987766554 444555555
No 125
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.13 E-value=3.7e-10 Score=88.99 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=63.4
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccc--------cccccchhcccccc
Q 024956 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH--------RYTAADEVINSLLD 213 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~--------~~~~~~~~v~~~~~ 213 (260)
..-.+||++..+..++++.+++|++++||||++ .||..+++.|++++++.+|....+ ....|++.++++.+
T Consensus 219 P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d 298 (306)
T KOG2882|consen 219 PIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGD 298 (306)
T ss_pred CeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHH
Confidence 344799999999999999999999999999999 699999999999999998754322 23447888888887
Q ss_pred ccccc
Q 024956 214 LRPEK 218 (260)
Q Consensus 214 l~~~~ 218 (260)
+....
T Consensus 299 ~~~~~ 303 (306)
T KOG2882|consen 299 LLPLL 303 (306)
T ss_pred Hhhhc
Confidence 76654
No 126
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.13 E-value=7.6e-10 Score=83.06 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=107.0
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc-CCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV-GKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (260)
+..+++||+|.||+|.+... + +...++........+..+ ...+.+.+.+++++++-. -..++ ...
T Consensus 12 ~ril~~FDFD~TIid~dSD~--w---Vv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~--------ik~ 78 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDN--W---VVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAE--------IKQ 78 (256)
T ss_pred CcEEEEEecCceeecCCcch--H---HHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHH--------HHH
Confidence 34578899999999864322 1 112223222222222222 122455566666665422 12222 223
Q ss_pred hhccCCCCccHHHHHHHHHHCCC-cEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----C-------------CC
Q 024956 86 HLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----R-------------TG 147 (260)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----~-------------~~ 147 (260)
.+..++..||+.++++.+++.|. .+.|+|+.+..+++..+ +.+++.++|+.|++.... | ..
T Consensus 79 ~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~ 157 (256)
T KOG3120|consen 79 VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNL 157 (256)
T ss_pred HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCc
Confidence 34568899999999999999985 99999999999999999 999999989877663210 0 01
Q ss_pred CC----ChHHHHHHH---HHcCCCCCcEEEEecCHhhHHHHHHcC-CeEEEEcCC
Q 024956 148 KP----SPDIFLEAA---KRLNMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPSL 194 (260)
Q Consensus 148 kp----~~~~~~~~l---~~l~~~~~~~~~vGD~~~Dv~~a~~~G-~~~i~~~~~ 194 (260)
.| |...+.++. .+-|+..++.+||||+-||+....... ..+++...+
T Consensus 158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkg 212 (256)
T KOG3120|consen 158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKG 212 (256)
T ss_pred CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCC
Confidence 11 112233322 224678889999999999987755544 445554443
No 127
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.12 E-value=1.9e-10 Score=88.12 Aligned_cols=173 Identities=16% Similarity=0.260 Sum_probs=95.8
Q ss_pred cE-EEEecCCccccCHHHHHHHHHHHHHHcCCC--CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 024956 10 SC-VILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS-- 84 (260)
Q Consensus 10 k~-vifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (260)
|+ |.+||||||.|....+...+. +.++.. ++.+....+ . ..+.++.. ..+..+.+...+.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~---~-------~~~~~g~~--~~e~~~~~~~~~~~~ 66 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGY---W-------DWEKWGIT--EPEFYEKLWRFYEEP 66 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSS---S-------HHHHHHHH--STTHHHHHHHHHTST
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhh---h-------HHHHhCCC--CHHHHHHHHHHHhCh
Confidence 45 899999999998665554444 344544 444433211 1 11111110 0122333333332
Q ss_pred hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChH-------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH
Q 024956 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~-------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~ 157 (260)
..+...++.||+.++|++|.+.|..++++|..... ...+-+.+.++...+-+.+++.+ |.
T Consensus 67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~-----K~-------- 133 (191)
T PF06941_consen 67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD-----KT-------- 133 (191)
T ss_dssp TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS-----GG--------
T ss_pred hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC-----CC--------
Confidence 23567899999999999999999888888776543 22334434444333324444422 11
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
.++.+ ++|+|++..+..+...|++++++..++++... ....+.+++|+.+.+.
T Consensus 134 --~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 134 --LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLIL 186 (191)
T ss_dssp --GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHH
T ss_pred --eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHH
Confidence 12222 89999999999999999999999986665543 6678888888776653
No 128
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.07 E-value=2.1e-11 Score=97.36 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~ 213 (260)
...-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+..+..+++++++..+
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na---~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNA---TPELKKAADYITPSNND 247 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS----HHHHHHSSEEESSGTC
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCC---CHHHHHhCCEEecCCCC
Confidence 4566778999999999999999999999999999999999998777766 56667888888877665
No 129
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7.2e-09 Score=75.62 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=107.7
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 88 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (260)
.|+.|+|||+.-.+. ...+...++..-........+ ..+-++.+.+++...+.. .++..+. ...
T Consensus 5 vi~sDFDGTITl~Ds-----~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s--~~Eile~-------llk 70 (220)
T COG4359 5 VIFSDFDGTITLNDS-----NDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS--LEEILEF-------LLK 70 (220)
T ss_pred EEEecCCCceEecch-----hHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCC--HHHHHHH-------HHh
Confidence 466799999985422 122223333221111111111 112344555565554433 2333222 234
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce----------------EEeccc--cCCCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV----------------IVGSDE--VRTGKPS 150 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~----------------i~~~~~--~~~~kp~ 150 (260)
.+.+.|+.+++++..++++++++++|++...++...++...|-+..... +...++ .|.-|
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK-- 148 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK-- 148 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc--
Confidence 5789999999999999999999999999999999888544433221111 111111 22223
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC--CCccccccccchhccccccccccccCC
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL--PKQTHRYTAADEVINSLLDLRPEKWGL 221 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~~~l 221 (260)
...+..+.-+++.++|.||+..|+++|+..-.- +... -+....+........++.|++..+.++
T Consensus 149 ----~~vI~~l~e~~e~~fy~GDsvsDlsaaklsDll---FAK~~L~nyc~eqn~~f~~fe~F~eIlk~iekv 214 (220)
T COG4359 149 ----SSVIHELSEPNESIFYCGDSVSDLSAAKLSDLL---FAKDDLLNYCREQNLNFLEFETFYEILKEIEKV 214 (220)
T ss_pred ----chhHHHhhcCCceEEEecCCcccccHhhhhhhH---hhHHHHHHHHHHcCCCCcccccHHHHHHHHHHH
Confidence 345556666778899999999999999987642 2210 001122344556666666666555443
No 130
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.05 E-value=1e-09 Score=87.23 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~ 153 (260)
.|++.++|++|+++|++++++|++.++.+...+ +.+|+..+|+.++++++....||+++.
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMST 207 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCccc
Confidence 378899999999999999999999999999888 899999999999999988888887643
No 131
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.02 E-value=6.3e-10 Score=98.77 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=84.9
Q ss_pred cCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
..+++|++.+++++|+++| ++++++|+.....++..+ +.+|+..+|..+. +.++ ..++++++..+++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~v~~l~~~~~~ 449 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAELL-------PEDK----LAIVKELQEEGGV 449 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccCC-------HHHH----HHHHHHHHHcCCE
Confidence 3578999999999999999 999999999999998888 8899977665431 1222 3455555546779
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--ccccccccc
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRPEK 218 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~~~ 218 (260)
++||||+.||+.+++.+|+. +..+...+.....+++++. ++..+...+
T Consensus 450 v~~vGDg~nD~~al~~A~vg---ia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 450 VAMVGDGINDAPALAAADVG---IAMGAGSDVAIEAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred EEEEECChhHHHHHhhCCEe---EEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 99999999999999999954 3333223333556777776 566555443
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.01 E-value=9.3e-09 Score=82.19 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=44.3
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+..+...+|..+++.+++.++++++++++|||+.||+.|++.++..++.+..
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 4566788999999999999999999999999999999999996654555543
No 133
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.01 E-value=7.2e-10 Score=97.89 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=87.7
Q ss_pred cCCCCccHHHHHHHHHHCCC-cEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 89 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
..+++|++.+++++|+++|+ +++++|+......+..+ +.+|+..+|..+. +.++ ..++++++...++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 45788999999999999999 99999999999999888 8899987765332 1222 4455555556689
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhc--cccccccccc
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVI--NSLLDLRPEK 218 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v--~~~~~l~~~~ 218 (260)
++||||+.||+.+++.+|+. +..+ .........++.++ +++.++...+
T Consensus 428 v~~vGDg~nD~~al~~A~vg---ia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i 478 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADVG---IAMGASGSDVAIETADVVLLNDDLSRLPQAI 478 (536)
T ss_pred EEEEeCCHHHHHHHHhCCEE---EEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence 99999999999999999963 3333 22333356778888 7888876653
No 134
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.01 E-value=4.3e-10 Score=90.29 Aligned_cols=68 Identities=9% Similarity=-0.060 Sum_probs=52.5
Q ss_pred ccCCCCCChHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccc---cchhccc
Q 024956 143 EVRTGKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA---ADEVINS 210 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l~~~--~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~---~~~~v~~ 210 (260)
..+....|...++++++.++++ .+++++|||+.||+.|++.+|..+++-|.....+..+.. ++++..+
T Consensus 170 i~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~ 242 (256)
T TIGR01486 170 VLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPA 242 (256)
T ss_pred EecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCC
Confidence 3455667889999999999999 999999999999999999999988888763211334443 2355544
No 135
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.96 E-value=3.7e-10 Score=83.91 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=86.6
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.+...||+.++|++|.+. +.++|+|++...+++..+ +.++... +|+.+++.+.+...+++ +.+.++.+|.++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 467889999999999988 999999999999999998 8888765 88999888877665654 66778889999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+++|||++.++.++...|+....+..
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999999987666654
No 136
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.87 E-value=2.3e-07 Score=70.38 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=90.6
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC---CccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g---l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
....++++...++..+..|++++|+|.++...++... ...+ +..+++..+.. .. -.|.....|..+.+..+.++
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfDt-~i-G~K~e~~sy~~I~~~Ig~s~ 197 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFDT-TI-GLKVESQSYKKIGHLIGKSP 197 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhhc-cc-cceehhHHHHHHHHHhCCCh
Confidence 4578999999999999999999999999988776544 2221 22222322222 11 24555688999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccc--cchhcccccccc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINSLLDLR 215 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~--~~~~v~~~~~l~ 215 (260)
.+++|.-|.+....+|+.+|+.+..+.++.+....... ..-++.+++.|.
T Consensus 198 ~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~ 249 (254)
T KOG2630|consen 198 REILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE 249 (254)
T ss_pred hheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence 99999999999999999999998888775444333222 356666666653
No 137
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.85 E-value=3.3e-09 Score=83.28 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956 147 GKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~--~~~~~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
.-.++.+++.+++.+++ +++++++|||+.||+.|++.+|+.++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 45566888999988876 66789999999999999999998754
No 138
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.85 E-value=5.7e-09 Score=92.64 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=81.5
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
..+++|++.+++++|++.|++++++|+......+..+ +.+|+. ++. +. .++++ ...++++..+++++
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-----~~~-~~--~p~~K----~~~v~~l~~~~~~v 469 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-----VRA-EV--LPDDK----AALIKELQEKGRVV 469 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-----EEc-cC--ChHHH----HHHHHHHHHcCCEE
Confidence 3568899999999999999999999999999998888 888884 221 11 12233 33444444467899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccccc
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK 218 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~ 218 (260)
+||||+.||+.+++.+|+... .+...+.....++.++ +++.++...+
T Consensus 470 ~~VGDg~nD~~al~~A~vgia---~g~g~~~a~~~Advvl~~~~l~~l~~~i 518 (562)
T TIGR01511 470 AMVGDGINDAPALAQADVGIA---IGAGTDVAIEAADVVLMRNDLNDVATAI 518 (562)
T ss_pred EEEeCCCccHHHHhhCCEEEE---eCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence 999999999999999997432 2222333355677777 3666665543
No 139
>PLN02382 probable sucrose-phosphatase
Probab=98.81 E-value=5.1e-08 Score=83.16 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=43.6
Q ss_pred ccCCCCCChHHHHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcC-CeEEEEcC
Q 024956 143 EVRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPS 193 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l---~~~~~~~~~vGD~~~Dv~~a~~~G-~~~i~~~~ 193 (260)
..+.+-.|..+++.+++++ |++++++++|||+.||++|.+.+| ..+++-|.
T Consensus 169 I~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 169 VLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred EEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 3455667789999999999 999999999999999999999999 56666554
No 140
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.81 E-value=2.9e-08 Score=79.93 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----CCeEEEEcCCCCccccccccchhccccccccccccC
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG 220 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~----G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 220 (260)
+.+..|..+++++++.+++..+++++|||+.||+.|.+.+ |+. +.+.. . ...|.+.+++..++..++..
T Consensus 170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~-vavg~--a----~~~A~~~l~~~~~v~~~L~~ 242 (266)
T PRK10187 170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGIS-VKVGT--G----ATQASWRLAGVPDVWSWLEM 242 (266)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeE-EEECC--C----CCcCeEeCCCHHHHHHHHHH
Confidence 4455678999999999999999999999999999999998 554 44432 1 13477788888888777765
Q ss_pred CC
Q 024956 221 LP 222 (260)
Q Consensus 221 l~ 222 (260)
|.
T Consensus 243 l~ 244 (266)
T PRK10187 243 IT 244 (266)
T ss_pred HH
Confidence 54
No 141
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.77 E-value=7e-08 Score=76.96 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=62.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC-------------------------
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG------------------------- 147 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~------------------------- 147 (260)
.|++.++|++|+++|++++++|++..+.+...+ +.+|+..+|+.+++++.....
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 378889999999999999999999999999888 999999999988877543211
Q ss_pred ----CC-ChHHHHHHHHHcCCCC-CcEEEEecCH
Q 024956 148 ----KP-SPDIFLEAAKRLNMEP-SSSLVIEDSV 175 (260)
Q Consensus 148 ----kp-~~~~~~~~l~~l~~~~-~~~~~vGD~~ 175 (260)
-| +|......|++.|+.. +.+-.|+|-.
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 11 2456677777777654 4455566655
No 142
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.76 E-value=2.3e-08 Score=77.41 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=42.8
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
-.+.+.+|+.+++.++++++++++++++|||+.||+.|++.+|+..+
T Consensus 157 v~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 157 VLPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred EecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 34567888999999999999999999999999999999999998765
No 143
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.76 E-value=8.4e-07 Score=75.85 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--------CCccccceEEeccc-----------------c
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V 144 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--------gl~~~f~~i~~~~~-----------------~ 144 (260)
+...|.+..+|+.|++.|.++.++||+...++...+.-.+ .+.++||.|+.... .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 3456899999999999999999999999998877763222 46789999887421 1
Q ss_pred CCC---------CC----ChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHc-CCeEEEEcC
Q 024956 145 RTG---------KP----SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPS 193 (260)
Q Consensus 145 ~~~---------kp----~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~-G~~~i~~~~ 193 (260)
+.. ++ ...-...+++.++...++++||||+. .|+...+.. |+.++++-.
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 110 00 01235777888899999999999999 799887776 999999965
No 144
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.74 E-value=2.2e-08 Score=93.01 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
.+++|++.+.+++|++.|++++++|+......+..+ +.+|+..+|..+ .|+...+++++++..+++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~~~~~-----------~p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEVIAGV-----------LPDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEEEeCC-----------CHHHHHHHHHHHhhcCCEEE
Confidence 367899999999999999999999999999888787 888986544322 13445567777777888999
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCccccccc--cchhccccccccccc
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINSLLDLRPEK 218 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~ 218 (260)
||||+.||+.+++.+|+...+-+ ..+..... .....+++.++...+
T Consensus 717 ~vGDg~nD~~al~~Agvgia~g~---g~~~a~~~ad~vl~~~~~~~i~~~i 764 (834)
T PRK10671 717 MVGDGINDAPALAQADVGIAMGG---GSDVAIETAAITLMRHSLMGVADAL 764 (834)
T ss_pred EEeCCHHHHHHHHhCCeeEEecC---CCHHHHHhCCEEEecCCHHHHHHHH
Confidence 99999999999999999544432 23333333 344556677666554
No 145
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.74 E-value=7.6e-08 Score=66.34 Aligned_cols=122 Identities=11% Similarity=0.141 Sum_probs=96.3
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
.-++++.+.+.+++|++. +.+++.|+.....+.+.+ +..|+. .+.++.. .+++....+++.|+-+.+.+
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~--~~rv~a~-------a~~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIP--VERVFAG-------ADPEMKAKIIRELKKRYEKV 96 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCc--eeeeecc-------cCHHHHHHHHHHhcCCCcEE
Confidence 467899999999999999 999999998888887777 777754 2344322 34577788999998877899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCC
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL 221 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l 221 (260)
+||||+.||+.+.+++-+..+-+............++.+++++.|+++.....
T Consensus 97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~ 149 (152)
T COG4087 97 VMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDT 149 (152)
T ss_pred EEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcc
Confidence 99999999999999999876666553334444678899999999888776543
No 146
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.72 E-value=2.8e-08 Score=92.73 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=93.6
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC----------------CCCCChHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~----------------~~kp~~~~~ 154 (260)
+++|++.+.+++|++.|++++++|+.......... +..|+...++.+++++... .....|+..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 67899999999999999999999999999988888 8899976666554443221 233566777
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhc--cccccccccc
Q 024956 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVI--NSLLDLRPEK 218 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v--~~~~~l~~~~ 218 (260)
..+++.++-..+.++|+||+.||+.+++.+++...+ +....+. +..++.++ +++..+...+
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~---g~~g~~va~~aaDivl~dd~~~~i~~~i 670 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAM---GQTGTDVAKEAADMILTDDDFATILSAI 670 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEec---CCCcCHHHHHhcCEEEcCCCHHHHHHHH
Confidence 777777776678899999999999999999975433 3222333 56778888 4577765543
No 147
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.65 E-value=1.5e-06 Score=77.11 Aligned_cols=47 Identities=6% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCeEEEEcC
Q 024956 147 GKPSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~~~~v--GD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.-.|..+++.+++.++++.++++.| ||+.||+.|.+.+|..+++-+.
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 5677899999999999999999999 9999999999999998776544
No 148
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=64.47 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=69.0
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH------c
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR------L 161 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~------l 161 (260)
.++.++|.+.+++.+++..|+-+..+|=+........| +.+++..+|+.++.-.. + . +...+.+++.+ .
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~ViePh-P-~--K~~ML~~llr~i~~er~~ 112 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVIEPH-P-Y--KFLMLSQLLREINTERNQ 112 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEecCC-C-h--hHHHHHHHHHHHHHhhcc
Confidence 35789999999999999999999999999888888888 99999999999875321 1 1 12344445543 3
Q ss_pred CCCCCcEEEEecCHhhHHHHH
Q 024956 162 NMEPSSSLVIEDSVIGVVAGK 182 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~ 182 (260)
.+.|++++|++|..-.+.-..
T Consensus 113 ~ikP~~Ivy~DDR~iH~~~Iw 133 (164)
T COG4996 113 KIKPSEIVYLDDRRIHFGNIW 133 (164)
T ss_pred ccCcceEEEEecccccHHHHH
Confidence 478999999999986554433
No 149
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.60 E-value=1.5e-07 Score=69.29 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=63.2
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-ccc-ceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
.+.++||+.++|+++++. ++++|+|++....+...+ +.++.. .+| +.+++.+.+.. +. .+.+-..++.+.+
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~~ 128 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADES 128 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCcc
Confidence 577899999999999966 999999999999999988 888877 478 66777665431 11 1122244577889
Q ss_pred cEEEEecCHhh
Q 024956 167 SSLVIEDSVIG 177 (260)
Q Consensus 167 ~~~~vGD~~~D 177 (260)
.+++|+|++.-
T Consensus 129 ~vvivDd~~~~ 139 (156)
T TIGR02250 129 MVVIIDDREDV 139 (156)
T ss_pred cEEEEeCCHHH
Confidence 99999999953
No 150
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.59 E-value=8.1e-07 Score=65.59 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhh-----cCCccccceEEecccc---------CCCCC---ChH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEV---------RTGKP---SPD 152 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~-----~gl~~~f~~i~~~~~~---------~~~kp---~~~ 152 (260)
.|++.+++++++++|++++++|+++..... ..+ .. .++.. ..++.++.. ...+| +.+
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 588999999999999999999999887764 455 33 22321 234433321 12223 334
Q ss_pred HHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCe
Q 024956 153 IFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 153 ~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
.++.+++.+.-.- .-++.+||+.+|+.+-+++|+.
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 4455554433111 2245689999999999999985
No 151
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.58 E-value=1.2e-07 Score=74.39 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=57.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCC---CCChHHHHHHHHHcCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTG---KPSPDIFLEAAKRLNM 163 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~---kp~~~~~~~~l~~l~~ 163 (260)
....|++.++++.++++|+.|+++|++.... ....| ...|+..+-..++-.+..... ......-+..+++-|.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCccchhccccccccccccccccchHHHHHHHHcCC
Confidence 4788999999999999999999999987664 34456 666765432333333222111 1111333444444332
Q ss_pred CCCcEEEEecCHhhHHHHHH
Q 024956 164 EPSSSLVIEDSVIGVVAGKA 183 (260)
Q Consensus 164 ~~~~~~~vGD~~~Dv~~a~~ 183 (260)
. =+++|||+.+|+..++.
T Consensus 193 ~--Ii~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 193 R--IIANIGDQLSDFSGAKT 210 (229)
T ss_dssp E--EEEEEESSGGGCHCTHH
T ss_pred c--EEEEeCCCHHHhhcccc
Confidence 2 28899999999998443
No 152
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.56 E-value=4.1e-07 Score=72.46 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=38.3
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.+..-.|..+++.+++++++++++++++|||-||+.|. ..+...|.+..
T Consensus 160 lP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 160 LPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp EETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred ccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 34556678999999999999999999999999999999 66667777755
No 153
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.56 E-value=4.4e-06 Score=72.65 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=56.9
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--------ceEEeccccCCC-CCChHHHHHHHHHcC
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--------SVIVGSDEVRTG-KPSPDIFLEAAKRLN 162 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--------~~i~~~~~~~~~-kp~~~~~~~~l~~l~ 162 (260)
+.+.+.+ .++++|. .+++|++....++..+++.+|++..+ +..+++...+.. .-..+-...+.+.++
T Consensus 111 l~~~a~~---~~~~~g~-~vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWR---VFNSFGK-RYIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHH---HHHhCCC-EEEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 5555555 4455664 59999999999998884447765331 223332222110 011122233334556
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
.+... +++|||.+|..+...++...+.-
T Consensus 187 ~~~~~-~aYgDS~sD~plL~~a~e~y~V~ 214 (497)
T PLN02177 187 DALPD-LGLGDRETDHDFMSICKEGYMVP 214 (497)
T ss_pred CCCce-EEEECCccHHHHHHhCCccEEeC
Confidence 44444 89999999999999999765443
No 154
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.55 E-value=2.9e-06 Score=65.97 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=61.4
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCCh----HHHHHHHHHc
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSP----DIFLEAAKRL 161 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~----~~~~~~l~~l 161 (260)
..+..|++.++++.++++|++++++|+++... ....| ...|+..+ +.++-.......++.. +...++. .-
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~ 194 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLM-EE 194 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHH-hC
Confidence 56889999999999999999999999998766 55666 66787654 5555543222222211 2222222 22
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
| ..=+..|||..+|+... .+|.++.-
T Consensus 195 G--YrIv~~iGDq~sDl~G~-~~~~RtFK 220 (229)
T TIGR01675 195 G--YRIWGNIGDQWSDLLGS-PPGRRTFK 220 (229)
T ss_pred C--ceEEEEECCChHHhcCC-CccCceee
Confidence 2 22367899999999553 34434433
No 155
>PTZ00174 phosphomannomutase; Provisional
Probab=98.55 E-value=1.4e-08 Score=80.94 Aligned_cols=48 Identities=8% Similarity=-0.131 Sum_probs=39.8
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+....+-.|..+++.+++. ++++++||| +.||++|.+.++...+.+..
T Consensus 181 eI~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 181 DVFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred EeeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 4455677788999999998 589999999 89999999988877677753
No 156
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.52 E-value=1.1e-06 Score=70.20 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 147 GKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~--~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
..+|..+++.+++.+.-. +-.++.+|||+||+.|.+.+-+.++.-
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~ 252 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLP 252 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEec
Confidence 446678888888776643 447999999999999999999987653
No 157
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.47 E-value=6.2e-07 Score=82.21 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
-+++|++.+.+++|++.|++++++|+.......... +.+|+..+++ .. |+-...++++++ .+..++
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~~------~~------p~~K~~~v~~l~-~~~~v~ 632 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRAG------LL------PEDKVKAVTELN-QHAPLA 632 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeecC------CC------HHHHHHHHHHHh-cCCCEE
Confidence 478899999999999999999999999999888888 8899853221 11 223334555554 346899
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--ccccccccc
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE 217 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~ 217 (260)
||||+.||..+++.+++...+-+. .+.....++.++ +++.+|...
T Consensus 633 mvGDgiNDapAl~~A~vgia~g~~---~~~a~~~adivl~~~~l~~l~~~ 679 (741)
T PRK11033 633 MVGDGINDAPAMKAASIGIAMGSG---TDVALETADAALTHNRLRGLAQM 679 (741)
T ss_pred EEECCHHhHHHHHhCCeeEEecCC---CHHHHHhCCEEEecCCHHHHHHH
Confidence 999999999999999976554322 222233444333 455555543
No 158
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.40 E-value=1.8e-05 Score=63.04 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=73.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCc--cc-c--ceEE---------------e-ccccCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWN--ES-F--SVIV---------------G-SDEVRT 146 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~--~~-f--~~i~---------------~-~~~~~~ 146 (260)
-...+.+.++++.|+.+|+++..+|..........++ ..+|+. .. | +..+ . +=-...
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 3456789999999999999999999998877655552 334432 11 0 0000 0 001123
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH----HHHcCCeEEEEcC
Q 024956 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA----GKAAGMEVVAVPS 193 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~----a~~~G~~~i~~~~ 193 (260)
+-++...+..++...+..|+.++||+|+..++.. ++..|+.++++..
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 4567799999999999999999999999977655 4557888888876
No 159
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.37 E-value=1.2e-05 Score=63.67 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=56.1
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHH----HHHHH
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFL----EAAKR 160 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~----~~l~~ 160 (260)
...+..|++.++++.+++.|++++++|++.... ....| ...|+..+ +.++-.......+.+.-.++ .-+.+
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 357789999999999999999999999998654 34455 55677543 55554322111111111111 11222
Q ss_pred cCCCCCcEEEEecCHhhHHHHH
Q 024956 161 LNMEPSSSLVIEDSVIGVVAGK 182 (260)
Q Consensus 161 l~~~~~~~~~vGD~~~Dv~~a~ 182 (260)
-|. .=+..|||..+|+....
T Consensus 220 eGY--rIv~~iGDq~sDl~G~~ 239 (275)
T TIGR01680 220 EGY--NIVGIIGDQWNDLKGEH 239 (275)
T ss_pred cCc--eEEEEECCCHHhccCCC
Confidence 222 23688999999985443
No 160
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.36 E-value=7.8e-07 Score=83.51 Aligned_cols=124 Identities=16% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc----cceEEeccc----------------cCCCCCC
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----FSVIVGSDE----------------VRTGKPS 150 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~----f~~i~~~~~----------------~~~~kp~ 150 (260)
+++|++.+.++.|++.|++++++|+.......... +..|+... ....+++.. .-..+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 67899999999999999999999999888887777 77887531 011222111 1123334
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc--cccccccc
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPEK 218 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~--~~~l~~~~ 218 (260)
|+-..++++.++-..+.++|+||+.||+.|.+.+++...+- . ..+..+..+++++.+ +..+.+.+
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~--g~~~ak~aAD~vl~dd~f~~i~~~i 682 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-S--GTEVAKEASDMVLADDNFATIVAAV 682 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-C--CcHHHHHhcCeEEccCCHHHHHHHH
Confidence 56667777777766778999999999999999999854433 2 233346678888876 66665543
No 161
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.34 E-value=4.3e-06 Score=61.01 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=68.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhH---HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~---~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
+.+-++++++-..++|-.++++|++....+ ...|++.+.+......++.++- .||...-....++..++.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk---~k~~qy~Kt~~i~~~~~~---- 187 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK---PKPGQYTKTQWIQDKNIR---- 187 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCC---CCcccccccHHHHhcCce----
Confidence 445678899999999999999999876543 3455466777665555555532 233333445566776664
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 169 LVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
++.|||-+|+.+|+.+|.+.|-+.+
T Consensus 188 IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 188 IHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred EEecCCchhhhHHHhcCccceeEEe
Confidence 9999999999999999998877765
No 162
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.34 E-value=4.2e-06 Score=64.20 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=60.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh----HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~----~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
...+.||+.++++..-++|..|+.+||+..+. ....| .+.|+....+..+.-- ...+++..-.+.+-+ .
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk--k~~k~Ke~R~~~v~k----~ 192 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK--KDKKSKEVRRQAVEK----D 192 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe--eCCCcHHHHHHHHhh----c
Confidence 56899999999999999999999999998775 34455 6677765543322111 224444444444444 3
Q ss_pred CCcEEEEecCHhhHHHHHHc
Q 024956 165 PSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~ 184 (260)
.+-++.|||++.|.......
T Consensus 193 ~~iVm~vGDNl~DF~d~~~k 212 (274)
T COG2503 193 YKIVMLVGDNLDDFGDNAYK 212 (274)
T ss_pred cceeeEecCchhhhcchhhh
Confidence 45589999999987654443
No 163
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.7e-06 Score=58.57 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.1
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
++.....++...|..+++. .+++.+|.......+..- ..+-. ...++.+...+..++ -.+.+..+++
T Consensus 69 ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~-~~l~~q~ih~~~l~i~g~h~K--------V~~vrth~id-- 136 (194)
T COG5663 69 KEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITY-AWLFIQNIHYDHLEIVGLHHK--------VEAVRTHNID-- 136 (194)
T ss_pred HHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHH-HHHHHhccchhhhhhhccccc--------chhhHhhccC--
Confidence 3455667888999999988 688889888776644332 21111 123344433222221 3456677776
Q ss_pred cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc
Q 024956 167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (260)
Q Consensus 167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~ 198 (260)
+++.|+. |-++.|+.+|++++.+++.+++-
T Consensus 137 --lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 137 --LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred --ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 8999999 78888999999999999955443
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.28 E-value=1.7e-06 Score=79.41 Aligned_cols=69 Identities=14% Similarity=-0.022 Sum_probs=49.0
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
+..-.|..+++.+++ +++++.+++|||+.||+.|.+.++.....+..+. ....|.+.+++..|+...+.
T Consensus 653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~----~~s~A~~~l~~~~eV~~~L~ 721 (726)
T PRK14501 653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP----GESRARYRLPSQREVRELLR 721 (726)
T ss_pred ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC----CCCcceEeCCCHHHHHHHHH
Confidence 345567788888888 6788899999999999999999742222222222 13567788888887666554
No 165
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.27 E-value=2.6e-06 Score=76.54 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
++.|++.+.+++|++.|++++++|+.......... +..|+.+++ .. -.|+-...+++.+.-....++|
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~~v~----a~-------~~PedK~~~v~~lq~~g~~Vam 513 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVDDFI----AE-------ATPEDKIALIRQEQAEGKLVAM 513 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCEEE----cC-------CCHHHHHHHHHHHHHcCCeEEE
Confidence 77899999999999999999999999999888777 888985432 21 1234444555554434457999
Q ss_pred EecCHhhHHHHHHcCCeEEEE
Q 024956 171 IEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
+||+.||..+.+.+++...+-
T Consensus 514 vGDG~NDapAL~~AdvGiAm~ 534 (675)
T TIGR01497 514 TGDGTNDAPALAQADVGVAMN 534 (675)
T ss_pred ECCCcchHHHHHhCCEeEEeC
Confidence 999999999999999876654
No 166
>PLN02423 phosphomannomutase
Probab=98.24 E-value=1.7e-07 Score=74.52 Aligned_cols=47 Identities=11% Similarity=-0.136 Sum_probs=38.8
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+.+..+-.|..+++.++ +++++++||| +.||++|.+..|+.++-|..
T Consensus 182 Di~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred EEeeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 34456666667777777 8999999999 69999999999998888876
No 167
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.23 E-value=3.3e-07 Score=68.06 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=59.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.+...|++.++|+.+.+. +.++++|.+...++...+ +.+.- ..+|+.+++.+.+...+.. . .+-++.++.++++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~-~--~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGS-Y--IKDLSKLGRDLDN 108 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTE-E--E--GGGSSS-GGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccccccccccc-c--ccchHHHhhcccc
Confidence 366789999999999777 999999999999999888 66655 4678888877655322211 1 2556667778899
Q ss_pred EEEEecCHhhHH
Q 024956 168 SLVIEDSVIGVV 179 (260)
Q Consensus 168 ~~~vGD~~~Dv~ 179 (260)
+++|+|++.-..
T Consensus 109 vvivDD~~~~~~ 120 (159)
T PF03031_consen 109 VVIVDDSPRKWA 120 (159)
T ss_dssp EEEEES-GGGGT
T ss_pred EEEEeCCHHHee
Confidence 999999997543
No 168
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.22 E-value=4.6e-05 Score=68.96 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
-++.|++...+..|++.|++++++|+.+....+... +..| ++.+++. -+| +-..+.++++.-....++
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VG----i~~V~ae-----v~P--~~K~~~Ik~lq~~~~~Va 789 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVG----IDNVYAE-----VLP--EQKAEKIKEIQKNGGPVA 789 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhC----cceEEec-----cCc--hhhHHHHHHHHhcCCcEE
Confidence 477899999999999999999999999999888777 7777 4555542 122 333444444444446799
Q ss_pred EEecCHhhHHHHHHcCCeEEEE
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
||||+.||-.+...+.+.....
T Consensus 790 MVGDGINDaPALA~AdVGIaig 811 (951)
T KOG0207|consen 790 MVGDGINDAPALAQADVGIAIG 811 (951)
T ss_pred EEeCCCCccHHHHhhccceeec
Confidence 9999999999988887654433
No 169
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.19 E-value=8.3e-06 Score=73.40 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=77.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
++.|++.+.+++|++.|++++++|+.+........ +..|+..+|. .-.|+-..++.+.++-.-+-+.|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~~v~A-----------~~~PedK~~iV~~lQ~~G~~VaM 508 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVDRFVA-----------ECKPEDKINVIREEQAKGHIVAM 508 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCceEEc-----------CCCHHHHHHHHHHHHhCCCEEEE
Confidence 77899999999999999999999999999888777 8889864321 22456667777776655567999
Q ss_pred EecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v 208 (260)
+||+.||..+.+.+.+...+- ++ .+-.++.++.+.
T Consensus 509 tGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVL 543 (673)
T PRK14010 509 TGDGTNDAPALAEANVGLAMN-SG--TMSAKEAANLID 543 (673)
T ss_pred ECCChhhHHHHHhCCEEEEeC-CC--CHHHHHhCCEEE
Confidence 999999999999999865554 32 222245555444
No 170
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.18 E-value=6e-06 Score=74.35 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
++.|++.+.+++|++.|++++++|+.+........ +..|+.++ +. .-.|+-..++.++++-.-+-+.|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId~v----~A-------~~~PedK~~iV~~lQ~~G~~VaM 512 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDF----LA-------EATPEDKLALIRQEQAEGRLVAM 512 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcEE----Ec-------cCCHHHHHHHHHHHHHcCCeEEE
Confidence 67899999999999999999999999999888777 88898542 21 22456666666666655567999
Q ss_pred EecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v 208 (260)
+||+.||..+.+.+.+...+- .+ .+-.++.++.+.
T Consensus 513 tGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVL 547 (679)
T PRK01122 513 TGDGTNDAPALAQADVGVAMN-SG--TQAAKEAGNMVD 547 (679)
T ss_pred ECCCcchHHHHHhCCEeEEeC-CC--CHHHHHhCCEEE
Confidence 999999999999999866555 32 222245555444
No 171
>PLN02645 phosphoglycolate phosphatase
Probab=98.10 E-value=4.7e-05 Score=62.90 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.++|++.++|++|+++|++++++||+... .....+ +.+|+...++.++++. ......++..+.....
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~---------~~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSS---------FAAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehH---------HHHHHHHHhhccCCCC
Confidence 57899999999999999999999998844 334455 6688877777787763 3556677776665556
Q ss_pred EEEEecCHhhHHHHHHcCCeEEE
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
.+|++++..+...++.+|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 78889999999999999998654
No 172
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.3e-05 Score=72.37 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
-++.|++.+.+++|++.|++++++|+.+....+... +.+|+++++..+. |+-..+.++++.-.-..++
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId~v~Aell-----------PedK~~~V~~l~~~g~~Va 603 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGIDEVRAELL-----------PEDKAEIVRELQAEGRKVA 603 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChHhheccCC-----------cHHHHHHHHHHHhcCCEEE
Confidence 478899999999999999999999999999888777 8899865544332 2444555555554446899
Q ss_pred EEecCHhhHHHHHHcCCeEEEEc
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~~ 192 (260)
||||+.||..+...+-+...+-.
T Consensus 604 mVGDGINDAPALA~AdVGiAmG~ 626 (713)
T COG2217 604 MVGDGINDAPALAAADVGIAMGS 626 (713)
T ss_pred EEeCCchhHHHHhhcCeeEeecC
Confidence 99999999999999987655444
No 173
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.03 E-value=1.5e-05 Score=75.29 Aligned_cols=122 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----------------cCCCCCChHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------------VRTGKPSPDIF 154 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------------~~~~kp~~~~~ 154 (260)
++.|++.+.+++|++.|++++++|+.....+.... +..|+..--+.++.+++ .-...-.|+-.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 67889999999999999999999999999888777 88888532122332221 11123345666
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--cccccc
Q 024956 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLR 215 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~ 215 (260)
.++.+.+.-.-+.++|+||+.||..+.+.|.+...+-..+ .+-.+..+|.++. ++..+.
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~g--tdvAk~aADivL~dd~f~~I~ 718 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISG--TEVAKEASDIILLDDNFASIV 718 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCc--cHHHHHhCCEEEecCCHHHHH
Confidence 6666666545567999999999999999998865543221 2223455666655 444433
No 174
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.01 E-value=1.9e-05 Score=73.18 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=54.5
Q ss_pred CCCCCChHHHHHHHH---HcCCCCCcEEEEecCHhhHHHHHHcCC-------------eEEEEcCCCCccccccccchhc
Q 024956 145 RTGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGM-------------EVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~---~l~~~~~~~~~vGD~~~Dv~~a~~~G~-------------~~i~~~~~~~~~~~~~~~~~~v 208 (260)
+.+-.|..+++.+++ .++.+++.+++|||+.||..|.+.++- -+|-+.. ....|.+.+
T Consensus 758 p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~------~~S~A~y~L 831 (854)
T PLN02205 758 PQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQ------KPSKAKYYL 831 (854)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECC------CCccCeEec
Confidence 345567788888875 468899999999999999999998862 2233322 135577888
Q ss_pred cccccccccccCCCCCc
Q 024956 209 NSLLDLRPEKWGLPPFQ 225 (260)
Q Consensus 209 ~~~~~l~~~~~~l~~~~ 225 (260)
++..++.+++..+...+
T Consensus 832 ~d~~eV~~lL~~L~~~~ 848 (854)
T PLN02205 832 DDTAEIVRLMQGLASVS 848 (854)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 88888888877665433
No 175
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.01 E-value=1.3e-05 Score=73.86 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=73.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------------CCCC
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTGK 148 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------------~~~k 148 (260)
++.|++.+.+++|++.|+++.++|+.+........ +..|+... +++++.. ...+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 67899999999999999999999999999888777 88888541 1111110 1223
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~ 191 (260)
-.|+-...+.+.++-.-+.+.|+||+.||..+.+.+.+...+-
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~ 560 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA 560 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec
Confidence 3456666666666655667999999999999999999875553
No 176
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.99 E-value=2e-05 Score=73.66 Aligned_cols=112 Identities=10% Similarity=0.065 Sum_probs=78.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF 154 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~ 154 (260)
++.|++.+.+++|++.|+++.++|+.......... +..|+.. +.++.+.+. ....-.|+-.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K 591 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQK 591 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHH
Confidence 56789999999999999999999999888887777 8889852 223222111 1122344555
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v 208 (260)
.++.+.+.-.-+.+.|+||+.||..+.+.+.+...+- .+ .+-.+..++.++
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~g--tdvAk~aADiVL 642 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TA--ADIAKEASDIIL 642 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-Cc--cHHHHHhCCEEE
Confidence 6666666545567999999999999999999876654 32 222245555544
No 177
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.98 E-value=1.7e-05 Score=74.24 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=80.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF 154 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~ 154 (260)
++.|++.+.+++|++.|+++.++|+.+........ +..|+.. +.++++.+. -...-.|+-.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K 626 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK 626 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence 56789999999999999999999999998888777 8889852 233332211 1223345666
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v 208 (260)
.++.+.+.-.-+-+.|+||+.||..+.+.+.+...+- .+ .+-.++.+|.++
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVL 677 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GA--VDIAREAADIIL 677 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-Cc--CHHHHHhCCEEE
Confidence 6666666655567999999999999999999876554 32 222355566555
No 178
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.92 E-value=2.6e-05 Score=73.11 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=82.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF 154 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~ 154 (260)
++.|++.+.+++|++.|+++.++|+.+........ +..|+.. +.++++.+. -...-.|+-.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K 626 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQK 626 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHH
Confidence 67789999999999999999999999998888777 8889852 222222211 1223345666
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccc
Q 024956 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP 216 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~ 216 (260)
.++.+.+.-.-+-+.|+||+.||..+.+.+.+...+- .+ .+-.++.+|.++ +++..+..
T Consensus 627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVLldd~f~~Iv~ 687 (903)
T PRK15122 627 SRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SG--ADIAKESADIILLEKSLMVLEE 687 (903)
T ss_pred HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cc--cHHHHHhcCEEEecCChHHHHH
Confidence 6677666655567999999999999999999875544 32 222255566555 34444433
No 179
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.91 E-value=3.8e-05 Score=73.10 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=81.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc----------cceEEecccc---------------
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----------FSVIVGSDEV--------------- 144 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~----------f~~i~~~~~~--------------- 144 (260)
-++.|++.++++.|++.|++++++|+.......... +..|+..- -+.++++...
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~ 723 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC 723 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence 367899999999999999999999999999888777 88888421 0123333211
Q ss_pred -CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc
Q 024956 145 -RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 210 (260)
Q Consensus 145 -~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~ 210 (260)
-...-.|+-...+.+.+.-.-+.++|+||+.||..+.+.+.+...+-..+ .+..+..++.++.+
T Consensus 724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~g--t~vak~aADivl~d 788 (1053)
T TIGR01523 724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGING--SDVAKDASDIVLSD 788 (1053)
T ss_pred eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCc--cHHHHHhcCEEEec
Confidence 11233455666666666555567999999999999999999876643221 12235566666643
No 180
>PLN02580 trehalose-phosphatase
Probab=97.81 E-value=5.6e-05 Score=63.40 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHcCCCCCc---EEEEecCHhhHHHHHHc-----CCeEEEEcCCCCccccccccchhccccccccccc
Q 024956 147 GKPSPDIFLEAAKRLNMEPSS---SLVIEDSVIGVVAGKAA-----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~---~~~vGD~~~Dv~~a~~~-----G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 218 (260)
.-.|..+++.+++.++++..+ ++||||..||..|.+.+ |+. |.+..+. ....|.+.+++..++..++
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vgn~~----~~t~A~y~L~dp~eV~~~L 373 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVSSVP----KESNAFYSLRDPSEVMEFL 373 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEecCC----CCccceEEcCCHHHHHHHH
Confidence 456779999999999987653 38999999999999963 544 3333211 1245788899999988777
Q ss_pred cCC
Q 024956 219 WGL 221 (260)
Q Consensus 219 ~~l 221 (260)
..|
T Consensus 374 ~~L 376 (384)
T PLN02580 374 KSL 376 (384)
T ss_pred HHH
Confidence 544
No 181
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00011 Score=69.20 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=78.3
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEecccc----------------CCCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEV----------------RTGKPS 150 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~----------------~~~kp~ 150 (260)
.-++.+++.++++.|++.|++++++|+.......... +..|+..--. .++.+... ...+-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 3578899999999999999999999999999888777 8888754332 24443221 123344
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
|+...++.+.++-.-.-+.|.||+.||+.|.+.|.+...+...
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~ 666 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGE 666 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEeccc
Confidence 5666666666665567799999999999999999988766653
No 182
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.77 E-value=2.1e-05 Score=62.65 Aligned_cols=69 Identities=13% Similarity=-0.064 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~-------G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
+..|...++.++++++.++++++||||+.||+.|++.+ |..++.+..+ ..+..+++++++..++..++.
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~~~~~~~~~v~~~L~ 240 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAKFHLTGPQQVLEFLG 240 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCceEeCCCHHHHHHHHH
Confidence 33456999999999999999999999999999999998 6666777532 234668899999998876654
No 183
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.72 E-value=0.00026 Score=48.13 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=57.4
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
..+++||+.+++++|+++|++++++||++.. .....| +..|+.--.+.++++. ......+++. ...
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~~ 80 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG---------MAAAEYLKEH-KGG 80 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH---------HHHHHHHHHH-TTS
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH---------HHHHHHHHhc-CCC
Confidence 4678999999999999999999999999644 344566 6788875557777653 3445555553 234
Q ss_pred CcEEEEecCHhhHHHHHHcCC
Q 024956 166 SSSLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~ 186 (260)
..++++|.. ...+.++.+|+
T Consensus 81 ~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 81 KKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp SEEEEES-H-HHHHHHHHTTE
T ss_pred CEEEEEcCH-HHHHHHHHcCC
Confidence 567777755 66666777664
No 184
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.72 E-value=0.00011 Score=69.93 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=81.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc------------------------ceEEecccc--
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEV-- 144 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f------------------------~~i~~~~~~-- 144 (260)
++.|++.+.++++++.|++++++|+.....+.... +..|+..-- ..++++...
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 66789999999999999999999999999888777 777773210 023332211
Q ss_pred ----------------CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956 145 ----------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (260)
Q Consensus 145 ----------------~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v 208 (260)
-..+-.|+-...+.+.+.-...-++|+||+.||+.|.+.+.+...+-..|. +-.+..++.++
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~--~vak~aADivL 724 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS--DVSKQAADMIL 724 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCccc--HHHHHhhceEE
Confidence 123344555555555555444579999999999999999998765543321 11245566665
Q ss_pred cc--cccccc
Q 024956 209 NS--LLDLRP 216 (260)
Q Consensus 209 ~~--~~~l~~ 216 (260)
.+ +..+..
T Consensus 725 ~dd~f~~Iv~ 734 (997)
T TIGR01106 725 LDDNFASIVT 734 (997)
T ss_pred ecCCHHHHHH
Confidence 54 444433
No 185
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.62 E-value=0.00045 Score=48.74 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRAT 120 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~ 120 (260)
.+.+++.+.|++++++|+.++++|+++...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 355677889999999999999999997764
No 186
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.58 E-value=0.00044 Score=52.68 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=56.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--ccce--EEeccc--------cC--CCCCChHHHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSV--IVGSDE--------VR--TGKPSPDIFLE 156 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f~~--i~~~~~--------~~--~~kp~~~~~~~ 156 (260)
...|++.++|+.+.+. +.++|.|++...++...+ ..+++.. .+.. +..+.. .+ ..|+ +..
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 4679999999999996 999999999999999888 6665421 1111 111110 11 0122 222
Q ss_pred HHHHcC--CCCCcEEEEecCHhhHHHHHHcCC
Q 024956 157 AAKRLN--MEPSSSLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 157 ~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~G~ 186 (260)
+-..++ .+.+++++|+|++.-..+=-..|+
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence 223444 377899999999965444333343
No 187
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00024 Score=63.99 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc----eEEecccc----------------CCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEV----------------RTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~----~i~~~~~~----------------~~~kp 149 (260)
-+|.+++.+.++.+++.|+++.++|+.......... ++.|+...-+ ..+++... -..+-
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 367899999999999999999999999999888777 7788654333 22222111 12233
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.|....++.+.|+-.-+-+.|-||+.||..+.+.+.+..++--.
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~ 705 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGIS 705 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCC
Confidence 45666777777777777899999999999999999987666533
No 188
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.51 E-value=0.00021 Score=68.55 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--------------------------------
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------------------------------- 136 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~-------------------------------- 136 (260)
+-++.|++.++++.|++.|++++++|+...+.+.... ...|+...-.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 707 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFN 707 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999998888776665 5555432100
Q ss_pred ---------eEEecccc----------------------CCCCCChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHc
Q 024956 137 ---------VIVGSDEV----------------------RTGKPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 137 ---------~i~~~~~~----------------------~~~kp~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~ 184 (260)
.+++++.. -..+-.|.-...+.+.+.-. ..-++++||+.||+.|.+.|
T Consensus 708 ~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~A 787 (1057)
T TIGR01652 708 NLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEA 787 (1057)
T ss_pred hhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhc
Confidence 12222110 01122233333333333322 45799999999999999999
Q ss_pred CCeEEEEcCCCCccccccccchhccccccccccc
Q 024956 185 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 185 G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 218 (260)
.+.. .+.. ....+....+|+++.++..|...+
T Consensus 788 dVGI-gi~g-~eg~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 788 DVGV-GISG-KEGMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred Ceee-EecC-hHHHHHHHhhhhhhhhHHHHHHHH
Confidence 8765 4333 222234567899999888777665
No 189
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.49 E-value=0.00068 Score=53.80 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=43.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~ 142 (260)
.|.+.+.|.+|++.|..+++.|.+.++++...+ +..++..+|+.+++..
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGG 192 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCC
Confidence 456678899999999999999999999999999 8899999999998854
No 190
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.41 E-value=0.0017 Score=47.42 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhc-----CCccccceEEec-cc------cCCCCCChHHHHH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQH-----GWNESFSVIVGS-DE------VRTGKPSPDIFLE 156 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~-----gl~~~f~~i~~~-~~------~~~~kp~~~~~~~ 156 (260)
..+|+.++++.++++||++..+|+++.-. .+..| ... ++.. ..++.+ +. -..-..+|+.|+.
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHH
Confidence 45799999999999999999999987544 33344 322 3321 112222 10 0011123343332
Q ss_pred -HHHHc-CC----CCCcEEEEecCHhhHHHHHHcCCe
Q 024956 157 -AAKRL-NM----EPSSSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 157 -~l~~l-~~----~~~~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
+|+.+ .. ...=...+|++.+|+.+=+++|+.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 23332 11 222356699999999999999985
No 191
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0059 Score=49.85 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=72.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh---cCCccccceEEecccc-----CCCCCC-----------
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ---HGWNESFSVIVGSDEV-----RTGKPS----------- 150 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~gl~~~f~~i~~~~~~-----~~~kp~----------- 150 (260)
+...|....+|+.|+++|.++.++||++..++..-+ +. -.+.+.||.++..-.- ...+|-
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM-~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~ 317 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGM-RFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLL 317 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCc-eeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchh
Confidence 455678899999999999999999999998876433 21 1355677877653210 011110
Q ss_pred --------------hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956 151 --------------PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (260)
Q Consensus 151 --------------~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~ 193 (260)
...+...++.-++.-.+++||||.+ +|+...- ..|+.+-.+-.
T Consensus 318 wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 318 WDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 0224566777788889999999999 8998877 88888766543
No 192
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.39 E-value=0.00097 Score=58.93 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
-++.+++.+.+++|++.|++++++|+.......... +..|+ + ..-.|+-..++++.+.-....+.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~ 410 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI-------F-------ARVTPEEKAALVEALQKKGRVVA 410 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEE
Confidence 478899999999999999999999999988877666 76765 1 11234555555555543446799
Q ss_pred EEecCHhhHHHHHHcCCeEEE
Q 024956 170 VIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
|+||+.||..+.+.+.+...+
T Consensus 411 ~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 411 MTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred EECCChhhHHHHHhCCCcccc
Confidence 999999999999999876333
No 193
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.39 E-value=0.0013 Score=63.21 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=37.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
-++.|++.+.+++|++.|++++++|+.+........ +..|+.
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCC
Confidence 468899999999999999999999999998888777 777874
No 194
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.38 E-value=0.00067 Score=57.12 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=82.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCC--ChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
.....++.+.+.+.|.+++++|+- +....+..| ..+|.+-.--.++.+......|.+...|..+++.-+++|..++.
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H 179 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIH 179 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEE
Confidence 345678999999999999999987 444566666 77777654445778877888899999999999999999999999
Q ss_pred EecCH-hhHHHHHHcCCeEEEE
Q 024956 171 IEDSV-IGVVAGKAAGMEVVAV 191 (260)
Q Consensus 171 vGD~~-~Dv~~a~~~G~~~i~~ 191 (260)
+||+. .|..+++..|+.+...
T Consensus 180 ~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 180 CGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred ecCchhhhhcCccccchhHHHH
Confidence 99999 7999999999987655
No 195
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.27 E-value=0.01 Score=45.63 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
.++.||+.+++..|.+. .+-+++|.+...++++.. +..|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence 68899999999999987 677888877777776555 55544
No 196
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.26 E-value=0.0023 Score=54.40 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----CCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----RTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
...+.+..|+++|+-+++.|-+....++..+ .++. +.++--++. ..-.|+.+-++++++++++..+..+|
T Consensus 259 ~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF-~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvF 332 (574)
T COG3882 259 TFQNFIKGLKKQGVLLAVCSKNTEKDAKEVF-RKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVF 332 (574)
T ss_pred HHHHHHHHHHhccEEEEEecCCchhhHHHHH-hhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEE
Confidence 4457888999999999999999888888777 4432 333333222 23568889999999999999999999
Q ss_pred EecCHhhHHHHHHcCC
Q 024956 171 IEDSVIGVVAGKAAGM 186 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~ 186 (260)
++|++...+-.+..+-
T Consensus 333 iDD~p~ErE~vk~~~~ 348 (574)
T COG3882 333 IDDNPAERELVKRELP 348 (574)
T ss_pred ecCCHHHHHHHHhcCc
Confidence 9999988877777664
No 197
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.24 E-value=0.007 Score=52.34 Aligned_cols=89 Identities=10% Similarity=-0.059 Sum_probs=51.3
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--------eEEeccccCCCCCChHH-HHHHHHHcCCCCCcEE
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--------VIVGSDEVRTGKPSPDI-FLEAAKRLNMEPSSSL 169 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--------~i~~~~~~~~~kp~~~~-~~~~l~~l~~~~~~~~ 169 (260)
.++.+++.| +++++|..++..++..+++++|.+..+. ..+++-..+.. ..+. ...+.+.++ +....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~G~n--~~ek~~~rl~~~~g-~~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIRGTD--VDQSVANRVANLFV-DERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEecCc--cHHHHHHHHHHHhC-ccCcee
Confidence 556667777 9999999999999999966688754421 11111111111 1233 334444455 334577
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcC
Q 024956 170 VIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 170 ~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
-+||+..|-....-+ +.+++..
T Consensus 177 g~~~~~~~~~f~~~c--k~~~~~~ 198 (498)
T PLN02499 177 GLGRISASSSFLSLC--KEQIHPP 198 (498)
T ss_pred cccCCcccchhhhhC--ceEEecC
Confidence 788877655544443 3444433
No 198
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.19 E-value=0.0044 Score=50.44 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
.++|++.++|++|+++|++++++||++.. .....+ +.+|+....+.++++. ......+++.......
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~ 87 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKA 87 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCE
Confidence 47889999999999999999999997643 233456 6678765555666542 4455666665445567
Q ss_pred EEEEecCHhhHHHHHHcCCeEE
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVV 189 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i 189 (260)
++++|+. .....++..|+..+
T Consensus 88 v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 88 VYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred EEEEcCH-HHHHHHHHCCCEEe
Confidence 9999985 34455677887654
No 199
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.17 E-value=0.00039 Score=66.89 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=40.4
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
.-++++||+.||+.|.+.|.+.. .+.. ....+....+|+.+..+.-|.++++
T Consensus 872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG-~EG~qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 872 DMTLAIGDGANDVSMIQMADVGV-GISG-QEGRQAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cEEEEECCCcchHHHHHhcCeee-eecC-chhHHHHHhhccchhhhHHHHHHHH
Confidence 45899999999999999998764 4433 3333445678999999998888876
No 200
>PLN03017 trehalose-phosphatase
Probab=97.15 E-value=0.0012 Score=55.19 Aligned_cols=72 Identities=13% Similarity=-0.098 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHcCCCC---CcEEEEecCHhhHHHHHHcC----CeEEEEcCCCCccccccccchhccccccccccccC
Q 024956 148 KPSPDIFLEAAKRLNMEP---SSSLVIEDSVIGVVAGKAAG----MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG 220 (260)
Q Consensus 148 kp~~~~~~~~l~~l~~~~---~~~~~vGD~~~Dv~~a~~~G----~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 220 (260)
-.|..+++.+++.++... .-++|+||...|..+++.+. -..|.|... .....|.+.+++..++..++..
T Consensus 282 ~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~----~k~T~A~y~L~dp~eV~~fL~~ 357 (366)
T PLN03017 282 WDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKF----PKDTDASYSLQDPSEVMDFLAR 357 (366)
T ss_pred CCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCC----CCCCcceEeCCCHHHHHHHHHH
Confidence 356789999999988653 35899999999988888763 234555431 1235688899999998887765
Q ss_pred CCC
Q 024956 221 LPP 223 (260)
Q Consensus 221 l~~ 223 (260)
|..
T Consensus 358 L~~ 360 (366)
T PLN03017 358 LVE 360 (366)
T ss_pred HHH
Confidence 433
No 201
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0067 Score=48.65 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=54.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
..+++||+.++|+.|+++|++++++||++... ..+.|....++....+.++++.. .....+.+.. ++
T Consensus 22 G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~---------at~~~l~~~~-~~ 91 (269)
T COG0647 22 GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGD---------ATADYLAKQK-PG 91 (269)
T ss_pred CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHH---------HHHHHHHhhC-CC
Confidence 45789999999999999999999999997654 34555233556566677777642 2223332221 22
Q ss_pred CcEEEEecCHhhHHHHHHcCC
Q 024956 166 SSSLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~ 186 (260)
..++.|| ...+.+.++.+|+
T Consensus 92 ~kv~viG-~~~l~~~l~~~G~ 111 (269)
T COG0647 92 KKVYVIG-EEGLKEELEGAGF 111 (269)
T ss_pred CEEEEEC-CcchHHHHHhCCc
Confidence 4555555 3344455555554
No 202
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0015 Score=45.97 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=57.3
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCC--hHhHHH---HHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSH--RATIES---KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~--~~~~~~---~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
+..+...|++.+.+++|.+. +.++++|... +...+. .+.+.+.+.++-..++++.-.-
T Consensus 64 FRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKni---------------- 126 (180)
T COG4502 64 FRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKNI---------------- 126 (180)
T ss_pred hhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCCe----------------
Confidence 34578899999999999998 9999999872 222222 2226677776666777653211
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
-..-++|+|++-.++..+... |++...
T Consensus 127 ---vkaDilIDDnp~nLE~F~G~k---IlFdA~ 153 (180)
T COG4502 127 ---VKADILIDDNPLNLENFKGNK---ILFDAH 153 (180)
T ss_pred ---EEeeEEecCCchhhhhccCce---EEEecc
Confidence 112489999999888776554 455553
No 203
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.48 E-value=0.0027 Score=43.15 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.0
Q ss_pred EEEecCCccccCHHHHH
Q 024956 12 VILDLDGTLLNTDGMFS 28 (260)
Q Consensus 12 vifD~DGTL~d~~~~~~ 28 (260)
++||+||||++....+.
T Consensus 1 ~l~D~dGvl~~g~~~ip 17 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIP 17 (101)
T ss_dssp EEEESTTTSEETTEE-T
T ss_pred CEEeCccEeEeCCCcCc
Confidence 68999999998755443
No 204
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0065 Score=52.30 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~ 170 (260)
...||.+|-+.+|++.|++.+.+|+.++-...... ...|+++++.. . +|+-..+++++.+-.-.=+.|
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdfiAe---------a--tPEdK~~~I~~eQ~~grlVAM 514 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFIAE---------A--TPEDKLALIRQEQAEGRLVAM 514 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhhhhc---------C--ChHHHHHHHHHHHhcCcEEEE
Confidence 45699999999999999999999998887766555 66777543221 2 345666677776666677999
Q ss_pred EecCHhhHHHHHHcCCeEEEEc
Q 024956 171 IEDSVIGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 171 vGD~~~Dv~~a~~~G~~~i~~~ 192 (260)
.||+.||..+...+....++-+
T Consensus 515 tGDGTNDAPALAqAdVg~AMNs 536 (681)
T COG2216 515 TGDGTNDAPALAQADVGVAMNS 536 (681)
T ss_pred cCCCCCcchhhhhcchhhhhcc
Confidence 9999999999999887655443
No 205
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.43 E-value=0.042 Score=42.17 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccce-EEeccccCCCCCChHHHHHHHHHcC-CCCCc-
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSV-IVGSDEVRTGKPSPDIFLEAAKRLN-MEPSS- 167 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~-i~~~~~~~~~kp~~~~~~~~l~~l~-~~~~~- 167 (260)
|.....|..+++. ...|+.-.... .....| +..|+.-.... .+..-+...+|- .+...+++... ....+
T Consensus 137 pre~aaLa~~rEy--seti~~rs~d~~~~~~~~~L-~e~glt~v~garf~~v~~as~gKg--~Aa~~ll~~y~rl~~~r~ 211 (274)
T COG3769 137 PREQAALAMLREY--SETIIWRSSDERMAQFTARL-NERGLTFVHGARFWHVLDASAGKG--QAANWLLETYRRLGGART 211 (274)
T ss_pred ChHHhHHHHHHHh--hhheeecccchHHHHHHHHH-HhcCceEEeccceEEEeccccCcc--HHHHHHHHHHHhcCceeE
Confidence 4444555555553 44555433333 134455 55565422211 111111122222 34444444332 23334
Q ss_pred EEEEecCHhhHHHHHHcCCeEEE
Q 024956 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 168 ~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
++.+||++||+.+....-..++.
T Consensus 212 t~~~GDg~nD~Pl~ev~d~AfiV 234 (274)
T COG3769 212 TLGLGDGPNDAPLLEVMDYAFIV 234 (274)
T ss_pred EEecCCCCCcccHHHhhhhheee
Confidence 89999999999999887665443
No 206
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.0096 Score=46.48 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=61.1
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----cc----cCCCCC-------ChHH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DE----VRTGKP-------SPDI 153 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----~~----~~~~kp-------~~~~ 153 (260)
.+.+.+|..++++.|+++++|+.++|.+-...++..+....++-+ +-.+++. +. .+..+| +-..
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v 214 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSV 214 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHH
Confidence 345677899999999999999999999999888887744444332 2222111 10 111111 1122
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHcC
Q 024956 154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAG 185 (260)
Q Consensus 154 ~~~~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~G 185 (260)
++...+.+. -.-.++++-||+..|+.|+..+-
T Consensus 215 ~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~ 248 (298)
T KOG3128|consen 215 LQNESEYFHQLAGRVNVILLGDSIGDLHMADGVP 248 (298)
T ss_pred HHhhhHHHhhccCCceEEEeccccccchhhcCCc
Confidence 333333333 24468999999999999987653
No 207
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.41 E-value=0.022 Score=44.44 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=60.0
Q ss_pred EEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 024956 110 MALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 110 i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
=++||++.-...-.+. -.+++..+|. .|+++-.++ +...|+++.+++|-+...-++|||+...-.+|+..+++
T Consensus 178 NvLVTs~qLVPaLaKc-LLy~L~~~f~ieNIYSa~kvG----K~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wP 252 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKC-LLFRLDTIFRIENVYSSIKVG----KLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWP 252 (274)
T ss_pred EEEEEcCccHHHHHHH-HHhccCCccccccccchhhcc----hHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCC
Confidence 3566665544333333 4567777774 577765544 35899999999998788999999999999999999999
Q ss_pred EEEEcC
Q 024956 188 VVAVPS 193 (260)
Q Consensus 188 ~i~~~~ 193 (260)
++-++.
T Consensus 253 Fw~I~~ 258 (274)
T TIGR01658 253 FVKIDL 258 (274)
T ss_pred eEEeec
Confidence 998877
No 208
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.31 E-value=0.011 Score=46.50 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=53.4
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----cc----cCCCCC-------ChHH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DE----VRTGKP-------SPDI 153 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----~~----~~~~kp-------~~~~ 153 (260)
.+.+.+|+.++++.|+++++|+.|+|++-...++..+ ++.+...-==.+++- ++ .+...| +...
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 5789999999999999999999999999999999999 555542110011111 00 011111 1111
Q ss_pred HH--HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956 154 FL--EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 154 ~~--~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
+. ...+.+. .-.+++..||+..|+.|+..+
T Consensus 167 l~~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQLK-KRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCTT-T--EEEEEESSSGGGGTTTT-
T ss_pred ccCchHHHHhc-cCCcEEEecCccCChHhhcCC
Confidence 21 1112222 336899999999999999877
No 209
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=96.22 E-value=0.056 Score=51.70 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.8
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~ 123 (260)
+-++.+|+.+.++.|+++|++++++|+-..+.+..
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiN 683 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAIN 683 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHH
Confidence 46788999999999999999999999876655443
No 210
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.15 E-value=0.07 Score=42.17 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=49.1
Q ss_pred CCcEEEEeCCChHhHHHHHH--hhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956 107 GVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (260)
Q Consensus 107 g~~i~i~s~~~~~~~~~~l~--~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~ 184 (260)
-+++++||.++...-++.++ +..|+ .+|..+.-. +-+| ..+|+.++-. +||+|....+..|. .
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv--~vDEafFLg----G~~K----~~vL~~~~ph----IFFDDQ~~H~~~a~-~ 250 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGV--RVDEAFFLG----GLPK----GPVLKAFRPH----IFFDDQDGHLESAS-K 250 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCC--cHhHHHHhC----CCch----hHHHHhhCCC----EeecCchhhhhHhh-c
Confidence 48899999887665555553 44444 355544322 2222 3466666654 99999999999998 8
Q ss_pred CCeEEEEcCC
Q 024956 185 GMEVVAVPSL 194 (260)
Q Consensus 185 G~~~i~~~~~ 194 (260)
++.++.|..+
T Consensus 251 ~vps~hVP~g 260 (264)
T PF06189_consen 251 VVPSGHVPYG 260 (264)
T ss_pred CCCEEeccCC
Confidence 8888888764
No 211
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.14 E-value=0.073 Score=42.52 Aligned_cols=50 Identities=10% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCC---ChHhHHHHHHhhcCCccccceEEec
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGS 141 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~---~~~~~~~~l~~~~gl~~~f~~i~~~ 141 (260)
.+.|++.++|++|+++|++++++||+ ........+ +..|+....+.++++
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTA 69 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeH
Confidence 45679999999999999999999984 455566677 778887666777765
No 212
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.11 E-value=0.064 Score=38.64 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=58.9
Q ss_pred CCCCccHHHHHHHHHHC-C-CcEEEEeCCChH------h-HHHHHHhhcCCccccceEEeccccCCCCCC--hHHHHHHH
Q 024956 90 VKALPGANRLIKHLSCH-G-VPMALASNSHRA------T-IESKISYQHGWNESFSVIVGSDEVRTGKPS--PDIFLEAA 158 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~-g-~~i~i~s~~~~~------~-~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~--~~~~~~~l 158 (260)
..+.|....-+++++.. | ..++++||+.-. . ....++...|+. +-.. ...||. .+.+.+..
T Consensus 60 ~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp------VlRH--s~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 60 LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP------VLRH--SVKKPACTAEEVEYHF 131 (190)
T ss_pred cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc------eEee--cccCCCccHHHHHHHh
Confidence 45566667777777763 3 678888876321 1 122232333432 1111 123332 23333333
Q ss_pred HHcC-CCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCC
Q 024956 159 KRLN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP 195 (260)
Q Consensus 159 ~~l~-~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~ 195 (260)
..-. ..+++++||||.+ .|+.+|..+|--.++...+.
T Consensus 132 ~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 132 GNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred CCcccCChhHeEEEccchhhhHhhhhhccceeEEecccc
Confidence 2222 5789999999999 99999999999999987743
No 213
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=96.05 E-value=0.22 Score=41.42 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=57.0
Q ss_pred CcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 024956 108 VPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (260)
Q Consensus 108 ~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G 185 (260)
.--+++|+..-...-.++ -.+|+...| +.|++...+++ ...|+++.+++|- .-.-++|||+.....+|+...
T Consensus 371 cvnVlvTttqLipalaKv-LL~gLg~~fpiENIYSa~kiGK----escFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln 444 (468)
T KOG3107|consen 371 CVNVLVTTTQLIPALAKV-LLYGLGSSFPIENIYSATKIGK----ESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALN 444 (468)
T ss_pred eeEEEEeccchhHHHHHH-HHHhcCCcccchhhhhhhhccH----HHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhC
Confidence 334566665443333333 345666555 45777665553 4899999999997 556788999999999999999
Q ss_pred CeEEEEcC
Q 024956 186 MEVVAVPS 193 (260)
Q Consensus 186 ~~~i~~~~ 193 (260)
|++.-++.
T Consensus 445 ~PfwrI~~ 452 (468)
T KOG3107|consen 445 MPFWRISS 452 (468)
T ss_pred CceEeecc
Confidence 99888876
No 214
>PRK10444 UMP phosphatase; Provisional
Probab=95.54 E-value=0.16 Score=40.64 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhhcCCccccceEEec
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVGS 141 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~~gl~~~f~~i~~~ 141 (260)
.+.|++.+++++|+++|++++++||+...... ..+ +..|+.---+.++++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts 69 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTS 69 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecH
Confidence 35789999999999999999999999875443 344 556764334556554
No 215
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.078 Score=47.62 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=70.5
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHH----------------------------HHHHhhcCCccccceEEe
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIE----------------------------SKISYQHGWNESFSVIVG 140 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~----------------------------~~l~~~~gl~~~f~~i~~ 140 (260)
+-++.+++...|+.|+..|++++.+|+..-+... ..| +.+........++.
T Consensus 656 EDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL-~~lR~k~~~aLvi~ 734 (1051)
T KOG0210|consen 656 EDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNEL-NNLRRKTDCALVID 734 (1051)
T ss_pred HHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHH-HHhhcCCCcEEEEc
Confidence 3467789999999999999999999977444321 111 11111111112222
Q ss_pred cccc-------------------------CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 024956 141 SDEV-------------------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (260)
Q Consensus 141 ~~~~-------------------------~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~ 195 (260)
++.. ..+..++...+.+.++-+ ..+..|||+=||+.|...+.... ++.. .
T Consensus 735 G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~---krvc~IGDGGNDVsMIq~A~~Gi-GI~g-k 809 (1051)
T KOG0210|consen 735 GESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTG---KRVCAIGDGGNDVSMIQAADVGI-GIVG-K 809 (1051)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhC---ceEEEEcCCCccchheeecccce-eeec-c
Confidence 2100 012223333333333333 68999999999999988876542 2222 1
Q ss_pred Cccccccccchhcccccccccccc
Q 024956 196 KQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 196 ~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
...+..-+||+.+.-++-+.++++
T Consensus 810 EGkQASLAADfSItqF~Hv~rLLl 833 (1051)
T KOG0210|consen 810 EGKQASLAADFSITQFSHVSRLLL 833 (1051)
T ss_pred cccccchhccccHHHHHHHHHHhh
Confidence 122334567887777766666654
No 216
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.23 E-value=0.097 Score=42.05 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=37.5
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEec
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGS 141 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~ 141 (260)
+.|++.+++++|+++|++++++||++... ....+ +.+|+.--.+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence 67899999999999999999999986664 55556 667775434556554
No 217
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.21 Score=40.16 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=35.7
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC---CeEEEEcC
Q 024956 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG---MEVVAVPS 193 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G---~~~i~~~~ 193 (260)
+..+..++..+++++.....-+++.||...|-.+++.+. -.++-+..
T Consensus 180 ~~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~ 229 (266)
T COG1877 180 GVSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGV 229 (266)
T ss_pred CcchHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecC
Confidence 334778888899998777677999999999988888876 33444443
No 218
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.49 E-value=0.54 Score=37.23 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
..++|++.+.++.++++|+++.++||+.. ......+.+.+|+.--.+.++++. ......+++.. +.+
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~---------~~~~~~l~~~~-~~~ 82 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG---------SVTKDLLRQRF-EGE 82 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH---------HHHHHHHHHhC-CCC
Confidence 45688999999999999999999997763 334445523367665566676653 33344444322 234
Q ss_pred cEEEEecCHhhHHHHHHcCCe
Q 024956 167 SSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 167 ~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
.++.+|. ....+.++..|+.
T Consensus 83 ~v~v~G~-~~~~~~l~~~g~~ 102 (236)
T TIGR01460 83 KVYVIGV-GELRESLEGLGFR 102 (236)
T ss_pred EEEEECC-HHHHHHHHHcCCc
Confidence 5777875 3455566777754
No 219
>PLN02151 trehalose-phosphatase
Probab=93.96 E-value=0.11 Score=43.42 Aligned_cols=69 Identities=13% Similarity=-0.088 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHcCCCCC---cEEEEecCHhhHHHHHHcCC----eEEEEcCCCCccccccccchhccccccccccccCCC
Q 024956 150 SPDIFLEAAKRLNMEPS---SSLVIEDSVIGVVAGKAAGM----EVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLP 222 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~---~~~~vGD~~~Dv~~a~~~G~----~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~ 222 (260)
|..+++.+++.++..-. -++|+||-.+|-.+++.+.- -.|.+..+ .....|.+.+++..++..++..|.
T Consensus 270 KG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~----~k~T~A~y~L~dp~eV~~~L~~L~ 345 (354)
T PLN02151 270 KGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKY----AKETNASYSLQEPDEVMEFLERLV 345 (354)
T ss_pred HHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccC----CCCCcceEeCCCHHHHHHHHHHHH
Confidence 34455556665553322 27999999998888776521 13444321 113467888888888887776544
No 220
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.23 Score=45.74 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce---EEeccc-----------------cCCCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV---IVGSDE-----------------VRTGKP 149 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~---i~~~~~-----------------~~~~kp 149 (260)
-+..||+.+.++.+++.|+.+-.+|+.+-...++.. ..+|+..-=+. +-+.+. ....-|
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP 724 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSP 724 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCC
Confidence 367899999999999999999999999988887776 77776432111 111110 011111
Q ss_pred -ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 150 -SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 150 -~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
+...+-+.+++ .-+-+++-||+.||-.+.+.|.+...+--.
T Consensus 725 ~DK~lLVk~L~~---~g~VVAVTGDGTNDaPALkeADVGlAMGIa 766 (1034)
T KOG0204|consen 725 NDKHLLVKGLIK---QGEVVAVTGDGTNDAPALKEADVGLAMGIA 766 (1034)
T ss_pred chHHHHHHHHHh---cCcEEEEecCCCCCchhhhhcccchhcccc
Confidence 11222333332 234577889999999999999887665544
No 221
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.58 E-value=0.76 Score=41.17 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCcc--ccc--eEEeccc--------cCCCCCC---hHHHHH
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNE--SFS--VIVGSDE--------VRTGKPS---PDIFLE 156 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~--~f~--~i~~~~~--------~~~~kp~---~~~~~~ 156 (260)
|+.++..+.+++||++..+|.+..- ..+.+| +...-.. +-+ .+++.+. +-..||. -+++..
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL-~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYL-KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH-HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 6667777888888888888876432 234444 2111110 111 1222221 1123331 122333
Q ss_pred HHHHcCCCCC-cEEEEecCHhhHHHHHHcCCe
Q 024956 157 AAKRLNMEPS-SSLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 157 ~l~~l~~~~~-~~~~vGD~~~Dv~~a~~~G~~ 187 (260)
+...+.-+.+ -.+.||+..+|+-.=+.+|++
T Consensus 641 Ik~LF~p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 641 IKNLFPPSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHhcCCCCCceeeecCCCcccceeeeeecCC
Confidence 3333331111 256699999999999999986
No 222
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=92.55 E-value=2.4 Score=34.44 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=58.5
Q ss_pred ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCccc-cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~~~-f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
..-.+.||+.++++.|++.|.++.++||++....+...+ +.+|+... -+.++++ .......+++....
T Consensus 35 ~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ss---------a~~~a~ylk~~~~~ 105 (306)
T KOG2882|consen 35 LGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSS---------AYAIADYLKKRKPF 105 (306)
T ss_pred ecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccCh---------HHHHHHHHHHhCcC
Confidence 356789999999999999999999999998876555552 34555421 1222222 12333334333333
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.+.+..+|-.- =-+.++.+|+.......
T Consensus 106 ~k~Vyvig~~g-i~~eL~~aG~~~~g~~~ 133 (306)
T KOG2882|consen 106 GKKVYVIGEEG-IREELDEAGFEYFGGGP 133 (306)
T ss_pred CCeEEEecchh-hhHHHHHcCceeecCCC
Confidence 45666666443 23456777766555544
No 223
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=91.04 E-value=1.2 Score=37.02 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCCccHHHHHHHHHHC----CCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956 90 VKALPGANRLIKHLSCH----GVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~----g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
-.+.|++.++++.|++. |+++.++||+.. ......+.+.+|+.--.+.++.+. .....+++..+
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~ 85 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE 85 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC
Confidence 45689999999999998 999999999873 332233325667653334444432 23455555542
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
..++++|.+- -...++..|+..+.
T Consensus 86 ---~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 86 ---KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred ---CceEEEeChH-HHHHHHHcCCcccc
Confidence 2688888764 56777789987653
No 224
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=90.70 E-value=0.76 Score=37.58 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=32.6
Q ss_pred EEEEecCCccccCHHHHHH---HHHHHHHHcCC-CCChhhhhhccCCCHHHHHHHHHHHhCCCCCHH
Q 024956 11 CVILDLDGTLLNTDGMFSE---VLKTFLVKYGK-EWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH 73 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 73 (260)
+++||+||+|+.....+.. +++.+.+..|. .++-.-...--|.....-.+.+.+.++.+-+..
T Consensus 37 gfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~d 103 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSAD 103 (389)
T ss_pred eEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHH
Confidence 6899999999976544432 33333333221 111122223334444455566666666664443
No 225
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=90.60 E-value=0.93 Score=41.96 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
-++.|++++.+++|.+.+++++.+|+.++-..-...
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVa 709 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVA 709 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheeh
Confidence 467899999999999999999999998775544333
No 226
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.29 E-value=6.2 Score=31.26 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=66.3
Q ss_pred CCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
.+.|+..++++..+.. |+.+.-+++.+....++.. + .|.....- ..+++. .+..+++.++.+.+..+++
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~-~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vp- 177 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-D-AGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVP- 177 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H-cCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCc-
Confidence 4578888888877766 9988878888888776544 3 45443322 333332 3444578889888775443
Q ss_pred CcEEEEecC---HhhHHHHHHcCCeEEEEcCC
Q 024956 166 SSSLVIEDS---VIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 166 ~~~~~vGD~---~~Dv~~a~~~G~~~i~~~~~ 194 (260)
++++-+ +.|+..+...|...+++++.
T Consensus 178 ---VI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 666654 47999999999999999983
No 227
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.75 E-value=0.67 Score=37.51 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 134 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~ 134 (260)
+.+.++|++|+++|++++++|++....+...+ +.+++..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~ 63 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDP 63 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCC
Confidence 45678999999999999999999999888888 77787643
No 228
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=89.69 E-value=1 Score=36.29 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
+...+.|++++++|+++++.|+++...+...+ +.+++.
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~ 60 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHME 60 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCC
Confidence 44568999999999999999999999888877 667764
No 229
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=89.52 E-value=0.93 Score=33.87 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=14.8
Q ss_pred ccccEEEEecCCccccC
Q 024956 7 KLMSCVILDLDGTLLNT 23 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d~ 23 (260)
..+++|++|+||||+..
T Consensus 23 ~~v~~vv~D~Dgtl~~~ 39 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP 39 (170)
T ss_pred CCCCEEEEecCCccccC
Confidence 46799999999999965
No 230
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=89.51 E-value=5.4 Score=38.61 Aligned_cols=72 Identities=7% Similarity=-0.018 Sum_probs=49.2
Q ss_pred HhHHHHHHhhcCCccccceEEecc-----ccCCCCCChHHHHHHHHHcCCCCCcE-EEEecCHh-hHHHHHHcCCeEEEE
Q 024956 119 ATIESKISYQHGWNESFSVIVGSD-----EVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVI-GVVAGKAAGMEVVAV 191 (260)
Q Consensus 119 ~~~~~~l~~~~gl~~~f~~i~~~~-----~~~~~kp~~~~~~~~l~~l~~~~~~~-~~vGD~~~-Dv~~a~~~G~~~i~~ 191 (260)
..++..| +..++.. ..+++.+ ..+..-.+..+++++..++|++.+++ +|+||+-| |.+.+..--..+|.+
T Consensus 924 ~elr~~L-r~~gLr~--~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~ 1000 (1050)
T TIGR02468 924 KELRKLL-RIQGLRC--HAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVIL 1000 (1050)
T ss_pred HHHHHHH-HhCCCce--EEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEE
Confidence 3456666 6666654 3444432 34556667899999999999999999 55999999 977664333345544
Q ss_pred cC
Q 024956 192 PS 193 (260)
Q Consensus 192 ~~ 193 (260)
..
T Consensus 1001 ~g 1002 (1050)
T TIGR02468 1001 KG 1002 (1050)
T ss_pred ec
Confidence 43
No 231
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=89.51 E-value=0.8 Score=38.68 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--CCccccceEEecc-----------------------------
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--GWNESFSVIVGSD----------------------------- 142 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--gl~~~f~~i~~~~----------------------------- 142 (260)
+....++..+++.|.++.++||.............+ ++..+|+.++...
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~ 280 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTG 280 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCC
Confidence 444459999999999999999998877665554444 4677888765531
Q ss_pred -ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHH-HHHHcCCeEEEEcC
Q 024956 143 -EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVV-AGKAAGMEVVAVPS 193 (260)
Q Consensus 143 -~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~-~a~~~G~~~i~~~~ 193 (260)
....+.+++.....+++.++....+++|+||+. .||. .-+.-|+.++++..
T Consensus 281 p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 281 PLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred cchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 001233445667778888888889999999999 5654 34567777777754
No 232
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=89.13 E-value=0.93 Score=35.60 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
+...++|++++++|++++++|+++...+...+ +.+|+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 45688999999999999999999999888777 7778643
No 233
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=88.65 E-value=8.6 Score=30.21 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=57.7
Q ss_pred HHHHHHC-CCcEEEEeCCCh---HhHHHHHHhh-cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956 100 IKHLSCH-GVPMALASNSHR---ATIESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 100 l~~l~~~-g~~i~i~s~~~~---~~~~~~l~~~-~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~ 174 (260)
|++..++ ++.+.+++.+.. +.+....... -.+.+-|-.+++.+ ..-|.|..-++.++..|++ ++.|||.
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN---~a~PGP~~ARE~l~~~~iP---~IvI~D~ 96 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPN---PAAPGPKKAREILKAAGIP---CIVIGDA 96 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCchHHHHHHHhcCCC---EEEEcCC
Confidence 3444444 788888887743 3333333111 13443333333332 2457778889999999986 9999999
Q ss_pred H--hhHHHHHHcCCeEEEEcC
Q 024956 175 V--IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 175 ~--~Dv~~a~~~G~~~i~~~~ 193 (260)
+ .+....+..|+.+|.+..
T Consensus 97 p~~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 97 PGKKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred CccchHHHHHhcCCcEEEEec
Confidence 9 477899999999998876
No 234
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=88.61 E-value=7.8 Score=30.49 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCCccHHHHH---HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc-ccCCCCCChHHHHHHHHHcCCCCC
Q 024956 91 KALPGANRLI---KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 91 ~~~~~~~~~l---~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~-~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
.++|+..+++ +.|.+.|+.+.-+++.+....+ .| ...|..... ..++. ..+.+-.++..++.++++.+++
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~ak-rL-~d~GcaavM--PlgsPIGSg~Gi~n~~~l~~i~~~~~vP-- 177 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RL-EDAGCAAVM--PLGSPIGSGRGIQNPYNLRIIIERADVP-- 177 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHH-HH-HHTT-SEBE--EBSSSTTT---SSTHHHHHHHHHHGSSS--
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHCCCCEEE--ecccccccCcCCCCHHHHHHHHHhcCCc--
Confidence 4567777766 5566899999999998888776 44 345543221 11111 2245667889999999999886
Q ss_pred cEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956 167 SSLVIEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 167 ~~~~vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
+.|+-+. +|...|-++|+..|++|+
T Consensus 178 --vIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 178 --VIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp --BEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred --EEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 6666655 799999999999999997
No 235
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=88.54 E-value=7.3 Score=32.29 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=68.3
Q ss_pred CCCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccc--cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~--f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
..+.|+..+++++.+.. |+.+.++++.+....++.. + +|...+ +...+++ +.+-.+|+.++.+++...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~-~-~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~~v- 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE-D-AGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGATV- 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-h-cCCEEEeeccccccC---CCCCCCHHHHHHHHHcCCC-
Confidence 34567888888777766 9999899988888776544 3 344211 1222332 3344588999999999554
Q ss_pred CCcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956 165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 165 ~~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~ 194 (260)
-+.+|-+. .|+..|-.+|...++++++
T Consensus 251 ---pVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 251 ---PVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred ---cEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 37777765 6999999999999999984
No 236
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=88.40 E-value=0.9 Score=35.26 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
+.+...+.|++|+++|++++++|+++...+...+ +.+++.
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~ 58 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTS 58 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCC
Confidence 3456678999999999999999999999888777 777765
No 237
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=88.23 E-value=3 Score=32.13 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=34.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEe
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVG 140 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~ 140 (260)
..|++.+.++.|++++.++-++||...+. ..+.| .++|+.-.-+.|++
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~t 74 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL-QRLGFDVSEEEIFT 74 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH-HHhCCCccHHHhcC
Confidence 67899999999998889999999987654 33444 55665433334444
No 238
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=88.02 E-value=1.1 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
..++|++++++|++++++|+++...+...+ +.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 568999999999999999999999998888 777765
No 239
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.91 E-value=12 Score=29.83 Aligned_cols=95 Identities=12% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
.+.|+..+++++.+.. |+.+.-+++.+....++.. .+|.....- ..+++. .+..+++.++.+.+..+++
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~--~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp- 177 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE--EAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP- 177 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe-
Confidence 3467888888777766 9988878888888776444 345443322 334432 3444578888888875543
Q ss_pred CcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 166 ~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~ 194 (260)
+.++-+. .|+..+-..|...+++++.
T Consensus 178 ---VIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 6666554 7999999999999999983
No 240
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=87.76 E-value=1.1 Score=35.11 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
.|...+.|++++++|++++++|+++...+...+ ..+++..
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG 61 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence 345678899999999999999999999888777 7777653
No 241
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=86.88 E-value=1.3 Score=35.85 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
.+...+.|++++++|+++++.|+++...+...+ +.+++..
T Consensus 21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (272)
T PRK15126 21 GEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDA 60 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCC
Confidence 445578999999999999999999999888887 7777753
No 242
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=86.86 E-value=13 Score=29.67 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCccHHHHHH---HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956 91 KALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 91 ~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
.+.|+..++++ .|-+.|+.+.-+++.+....+ .| +..|.....- .-++ .+.+-.++..++.+++...++
T Consensus 118 ~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rL-ed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vp- 191 (267)
T CHL00162 118 YLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HL-EDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIP- 191 (267)
T ss_pred ccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCc-
Confidence 45677777664 566789999999999888776 44 4455432211 1122 245667889999999987765
Q ss_pred CcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956 166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 166 ~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~ 194 (260)
+.+|-+. +|+..|-.+|...++++++
T Consensus 192 ---VivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 192 ---VIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred ---EEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 6777655 7999999999999999984
No 243
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=86.73 E-value=1.5 Score=35.07 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
.+...+.|++++++|++++++|+++...+...+ +.+++.
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD 56 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 345678999999999999999999998888777 767765
No 244
>PTZ00445 p36-lilke protein; Provisional
Probab=86.19 E-value=1.5 Score=33.86 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.5
Q ss_pred ccccEEEEecCCcccc
Q 024956 7 KLMSCVILDLDGTLLN 22 (260)
Q Consensus 7 ~~~k~vifD~DGTL~d 22 (260)
..+|+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 3689999999999997
No 245
>PRK10976 putative hydrolase; Provisional
Probab=86.04 E-value=1.5 Score=35.28 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
.+...+.|++++++|+++++.|++....+...+ +.+++..
T Consensus 21 s~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (266)
T PRK10976 21 SPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS 60 (266)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 344578999999999999999999999888777 7777653
No 246
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=85.86 E-value=0.43 Score=37.97 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.7
Q ss_pred ccEEEEecCCccccC
Q 024956 9 MSCVILDLDGTLLNT 23 (260)
Q Consensus 9 ~k~vifD~DGTL~d~ 23 (260)
..+++||+||||.+.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 468999999999963
No 247
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=85.75 E-value=2.7 Score=38.05 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=54.2
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-ccc-ceEEeccccCCCCCChHHHHHHHHHcCCCC-
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP- 165 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~- 165 (260)
.+++.|++.++|+++.+. +.+.|+|-+.+.++...+ +...-. .+| +.|++.+..+..|. +......|
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde~~~~kt--------~dL~~~~p~ 268 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDESPFFKT--------LDLVLLFPC 268 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecCCCcccc--------cccccCCCC
Confidence 478899999999999988 999999999999988777 443322 344 56777776443332 22222233
Q ss_pred --CcEEEEecCHh
Q 024956 166 --SSSLVIEDSVI 176 (260)
Q Consensus 166 --~~~~~vGD~~~ 176 (260)
+.++.|+|+.+
T Consensus 269 g~smvvIIDDr~d 281 (635)
T KOG0323|consen 269 GDSMVVIIDDRSD 281 (635)
T ss_pred CCccEEEEeCccc
Confidence 34888888774
No 248
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.73 E-value=1.7 Score=41.44 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHH
Q 024956 90 VKALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l 125 (260)
..+.|++.++|+.|.+. +..++|+|+.+...++..+
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 34667888899998875 5689999999998887766
No 249
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=85.44 E-value=1.8 Score=34.85 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
.|...+.|++++++|+.+++.|++....+...+ +.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 345578999999999999999999999888777 7777653
No 250
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=85.29 E-value=6.3 Score=27.71 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=55.5
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh-HHHHHHhhcCCccccceE-----EeccccCCCCCChHHHHHHHHHcC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVI-----VGSDEVRTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i-----~~~~~~~~~kp~~~~~~~~l~~l~ 162 (260)
+...++.+...|..|++.|+.++++|++.... ....| +.+.+..-+-.- +.....+ ...+-..|..+-...+
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~~~~g-~gsklghfke~~n~s~ 119 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKVKQTGVLKPSLEEFTFEAVG-DGSKLGHFKEFTNNSN 119 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhccCcccccchhhhcCceeeec-CcccchhHHHHhhccC
Confidence 46688999999999999999999999987655 44555 655543211111 1111111 1223355666777777
Q ss_pred CCCCcEEEEecCHh
Q 024956 163 MEPSSSLVIEDSVI 176 (260)
Q Consensus 163 ~~~~~~~~vGD~~~ 176 (260)
....+..+++|-..
T Consensus 120 ~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 120 SIEKNKQVFDDESR 133 (144)
T ss_pred cchhceeeeccccc
Confidence 77788888888763
No 251
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=85.25 E-value=1.7 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
.+...+.|++++++|++++++|+++...+...+ +.+++.
T Consensus 17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 17 NESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 344567889999999999999999999888777 667643
No 252
>PLN02151 trehalose-phosphatase
Probab=85.14 E-value=0.47 Score=39.79 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=11.0
Q ss_pred ccEEEEecCCccc
Q 024956 9 MSCVILDLDGTLL 21 (260)
Q Consensus 9 ~k~vifD~DGTL~ 21 (260)
-.+|++|+||||.
T Consensus 98 ~~ll~lDyDGTL~ 110 (354)
T PLN02151 98 QIVMFLDYDGTLS 110 (354)
T ss_pred ceEEEEecCccCC
Confidence 3578889999999
No 253
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=84.73 E-value=2.2 Score=34.13 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
...+.+++|+++|++++++|++....+...+ +.+++.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 3568899999999999999999999988888 777764
No 254
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.70 E-value=2.2 Score=34.83 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=34.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
.+.+.+.|++|+++|+++++.|+.....+.... +.+++..
T Consensus 20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~ 59 (302)
T PRK12702 20 YGAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEH 59 (302)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence 445678999999999999999999999888777 7777754
No 255
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=83.66 E-value=2.2 Score=33.53 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
+.+...+.|++|+++|+++++.|++....+...+ ..+++.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~-~~~~~~ 55 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLL-KELGID 55 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH-HHTTHC
T ss_pred eCHHHHHHHHhhcccceEEEEEccCccccccccc-ccccch
Confidence 4467788999999999999999999999998888 677765
No 256
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=83.55 E-value=1.9 Score=34.02 Aligned_cols=64 Identities=20% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHHHHcCCC---CCcEEEEecCHhhHHHHHHcCCe-----EEEEcCCCCccccccccchhccc
Q 024956 146 TGKPSPDIFLEAAKRLNME---PSSSLVIEDSVIGVVAGKAAGME-----VVAVPSLPKQTHRYTAADEVINS 210 (260)
Q Consensus 146 ~~kp~~~~~~~~l~~l~~~---~~~~~~vGD~~~Dv~~a~~~G~~-----~i~~~~~~~~~~~~~~~~~~v~~ 210 (260)
....|..+++.++++++.. +.-++|+||...|..+.+.+.-. .+.+.... .......|.+.+++
T Consensus 162 ~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~-~~~~~t~A~y~l~~ 233 (235)
T PF02358_consen 162 PGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVS-VGEKPTAASYRLDD 233 (235)
T ss_dssp TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES------------------
T ss_pred CCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeec-cccccccccccccc
Confidence 3444778999999998875 77899999999999999887653 44454421 12223455555544
No 257
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=83.37 E-value=0.44 Score=39.30 Aligned_cols=24 Identities=46% Similarity=0.846 Sum_probs=21.9
Q ss_pred CCccccccccccccCCccccCCCCC
Q 024956 235 EPWYIGGPVVKGLGRGSKVLGIPTG 259 (260)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.|+-+.|.+.+|.|+| +.+|.|||
T Consensus 184 ~~y~~~g~V~~G~~~G-r~lgfPTa 207 (305)
T PRK05627 184 RPYSISGRVVHGQKLG-RTLGFPTA 207 (305)
T ss_pred CCCceEEEEEECcccC-ccccceeE
Confidence 6788999999999999 66999997
No 258
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=83.07 E-value=0.2 Score=46.03 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=61.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc---------------ccceEEecc-----ccCCCC--
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE---------------SFSVIVGSD-----EVRTGK-- 148 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~---------------~f~~i~~~~-----~~~~~k-- 148 (260)
++...+.+.+..+++.|++++.+|+..+...++.. ..-|+.. -.+.+.+.+ ..+..+
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA-~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~ 668 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD 668 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhh-hheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence 55667889999999999999999998776665544 4444211 011111110 011111
Q ss_pred CChHHHHHHHHHcC------CCC--------------CcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956 149 PSPDIFLEAAKRLN------MEP--------------SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 149 p~~~~~~~~l~~l~------~~~--------------~~~~~vGD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
-.++-+.++++... .+| +-+.+.||+.||-.+.+.+.+..++--.
T Consensus 669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGia 733 (1019)
T KOG0203|consen 669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIA 733 (1019)
T ss_pred cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccc
Confidence 12344555554432 122 2367789999999999999988777433
No 259
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=82.96 E-value=21 Score=28.09 Aligned_cols=95 Identities=13% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCCccHHHHHH---HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956 90 VKALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (260)
Q Consensus 90 ~~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~ 164 (260)
-.+.|+..++++ .|-+.|+.+.-+|+.+....++ | +..|...... .-+++ +.+--++..++.++++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arr-L-ee~GcaavMPl~aPIGS---g~G~~n~~~l~iiie~a~VP 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARR-L-EEAGCAAVMPLGAPIGS---GLGLQNPYNLEIIIEEADVP 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHH-H-HhcCceEeccccccccC---CcCcCCHHHHHHHHHhCCCC
Confidence 346677777775 5567899999999988887764 4 3345432221 12222 34556789999999999886
Q ss_pred CCcEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956 165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 165 ~~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
+.|+-+. +|...+-+.|+..|++|+
T Consensus 185 ----viVDAGiG~pSdAa~aMElG~DaVL~NT 212 (262)
T COG2022 185 ----VIVDAGIGTPSDAAQAMELGADAVLLNT 212 (262)
T ss_pred ----EEEeCCCCChhHHHHHHhcccceeehhh
Confidence 6666554 799999999999999998
No 260
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=82.87 E-value=2.4 Score=33.97 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
..+...+.|++++++|++++++|+++...+...+ +.+++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence 3445678999999999999999999999888888 7788764
No 261
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=82.79 E-value=0.96 Score=27.33 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=16.2
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~ 182 (260)
++++++++|+ ++|+||...|++++.
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 5778898887 699999999999865
No 262
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.06 E-value=2.7 Score=33.94 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
+...+.|++++++|+++++.|+++...+...+ +.+++.
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence 34567899999999999999999999998888 777774
No 263
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=81.13 E-value=1.2 Score=33.82 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=17.5
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHH
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVK 37 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~ 37 (260)
+++||.||||..........+.+.+.+
T Consensus 13 l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred EEEEecCCccccccccCCHHHHHHHHH
Confidence 678999999997644444444444433
No 264
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.89 E-value=8.8 Score=29.16 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhh---hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc-----CCccccceEEec
Q 024956 70 CAKHEFVNEVYSMFSDH---LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-----GWNESFSVIVGS 141 (260)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~-----gl~~~f~~i~~~ 141 (260)
.+.......+.+.++-. +-+.++.|. +|.+++++|++++++.+......-... ..+ .+-..||.++..
T Consensus 81 ~D~~~~~~rfl~~~~P~~~i~~EtElWPn---ll~~a~~~~ip~~LvNarls~~s~~~~-~~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 81 LDFPWAVRRFLDHWRPDLLIWVETELWPN---LLREAKRRGIPVVLVNARLSERSFRRY-RRFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp -SSHHHHHHHHHHH--SEEEEES----HH---HHHH-----S-EEEEEE---------------HHHHHHGGG-SEEEES
T ss_pred ccCHHHHHHHHHHhCCCEEEEEccccCHH---HHHHHhhcCCCEEEEeeeeccccchhh-hhhHHHHHHHHHhCCEEEEC
Confidence 33344444554444322 235677774 889999999999999877655432222 111 123457888765
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (260)
Q Consensus 142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv 178 (260)
+ +.-.+-+.++|.+++++...||---|.
T Consensus 157 s---------~~da~r~~~lG~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 157 S---------EADAERFRKLGAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp S---------HHHHHHHHTTT-S--SEEE---GGG--
T ss_pred C---------HHHHHHHHHcCCCcceEEEeCcchhcc
Confidence 4 445677888999999999999876654
No 265
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=77.89 E-value=1.4 Score=31.98 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.1
Q ss_pred cEEEEecCCccccCH
Q 024956 10 SCVILDLDGTLLNTD 24 (260)
Q Consensus 10 k~vifD~DGTL~d~~ 24 (260)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999874
No 266
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=77.82 E-value=1.4 Score=37.58 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHcCCCCCc-EEEEecCHhhHHHHHHcCCe
Q 024956 159 KRLNMEPSS-SLVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 159 ~~l~~~~~~-~~~vGD~~~Dv~~a~~~G~~ 187 (260)
+.+.+.+.- .+-||+...|+..-+.+|++
T Consensus 487 ~slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 487 KSLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HHhhCcCChhhccccccchhheeeccccCC
Confidence 444444442 44689999999998888875
No 267
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=77.41 E-value=1.4 Score=32.60 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=12.7
Q ss_pred cEEEEecCCccccC
Q 024956 10 SCVILDLDGTLLNT 23 (260)
Q Consensus 10 k~vifD~DGTL~d~ 23 (260)
+++++|+|+||+.+
T Consensus 2 ~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 2 KTLVLDLDETLVHS 15 (162)
T ss_pred cEEEEcCCCCcCCC
Confidence 57999999999987
No 268
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=77.11 E-value=5.1 Score=32.78 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.4
Q ss_pred cCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHH
Q 024956 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l 125 (260)
+..++|..-++++.+++.| ++++++||+....+...+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 6789999999999999999 799999999996665555
No 269
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=76.49 E-value=4.5 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
.+.+.+.|++|++.|++++++|++....+...+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~ 51 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELL 51 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 356778999999999999999999999888777
No 270
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=75.72 E-value=26 Score=24.98 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=50.9
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHH-HHH---hhcCCccccceEEe-cccc-----CCCCCChHHHHHHHHHcC
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIES-KIS---YQHGWNESFSVIVG-SDEV-----RTGKPSPDIFLEAAKRLN 162 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~-~l~---~~~gl~~~f~~i~~-~~~~-----~~~kp~~~~~~~~l~~l~ 162 (260)
...+.+++.+..++|-+++++-++.....-. ... ...++.......+. ..+. ...--.+...+.+++.++
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYD 100 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcC
Confidence 3455667777777788888887776543322 111 22333333332222 2211 011112345577777888
Q ss_pred CCCCcEEEE----ecCHhhHH---HHHHcCCeEEEEc
Q 024956 163 MEPSSSLVI----EDSVIGVV---AGKAAGMEVVAVP 192 (260)
Q Consensus 163 ~~~~~~~~v----GD~~~Dv~---~a~~~G~~~i~~~ 192 (260)
+.|.+++++ |.+++=++ .|+..|+.+|.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 899998886 66776554 4777899888764
No 271
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=74.53 E-value=23 Score=29.42 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=54.2
Q ss_pred cCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhH---HHHHHhhcCC----------ccccceEEeccccCCCCCChHHH
Q 024956 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATI---ESKISYQHGW----------NESFSVIVGSDEVRTGKPSPDIF 154 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~---~~~l~~~~gl----------~~~f~~i~~~~~~~~~kp~~~~~ 154 (260)
...++||+-.+++.|.+.| .++..+||+.-... .+.+ ...++ ...++.++.+....+ ...+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi-~~~~~P~GPl~L~~~g~~~~~i~~sga~rK----~~~l 268 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFI-TNRNFPYGPLLLRRWGGVLDNIIESGAARK----GQSL 268 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHH-hcCCCCCCchhHhhcCCcccccccchhhhc----ccHH
Confidence 4678999999999999987 89999999876543 3333 22221 223344444433222 2445
Q ss_pred HHHHHHcCCCCCcEEEEecCH-hhHHH
Q 024956 155 LEAAKRLNMEPSSSLVIEDSV-IGVVA 180 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~-~Dv~~ 180 (260)
+.++.++ +-...+.|||+= .|.+.
T Consensus 269 ~nil~~~--p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 269 RNILRRY--PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHHhC--CCceEEEecCCCCcCHHH
Confidence 5566664 345788999987 57654
No 272
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=74.34 E-value=12 Score=31.35 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
..-.||+.-+|.++... +.++++|+...-.+...+ +.+.-..++..-...+....-.+ .. -+-+..++-+++.++
T Consensus 213 f~kRPgvD~FL~~~a~~-yEIVi~sse~gmt~~pl~-d~lDP~g~IsYkLfr~~t~y~~G--~H-vKdls~LNRdl~kVi 287 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLAKY-YEIVVYSSEQGMTVFPLL-DALDPKGYISYKLFRGATKYEEG--HH-VKDLSKLNRDLQKVI 287 (393)
T ss_pred eccCchHHHHHHhhccc-ceEEEEecCCccchhhhH-hhcCCcceEEEEEecCcccccCc--cc-hhhhhhhccccceeE
Confidence 34568999999999854 999999998877776666 65544444444333332222111 11 223677888999999
Q ss_pred EEecCHh
Q 024956 170 VIEDSVI 176 (260)
Q Consensus 170 ~vGD~~~ 176 (260)
+|+=..|
T Consensus 288 vVd~d~~ 294 (393)
T KOG2832|consen 288 VVDFDAN 294 (393)
T ss_pred EEEcccc
Confidence 9987664
No 273
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=74.11 E-value=6.3 Score=35.84 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=65.6
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--cc-ceEEecc----------------ccCCCCCCh
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF-SVIVGSD----------------EVRTGKPSP 151 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f-~~i~~~~----------------~~~~~kp~~ 151 (260)
++..+..+.+++....|..+-++|+......+..- +++|.-. |- ....+.+ ..+..--.|
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTg-rrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETG-RRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhh-hhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 34567888999988999999999988776655554 5554321 10 0011110 112222234
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 024956 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~ 192 (260)
+....+.+.+.-....|-|-||+.||..+.+.+.+......
T Consensus 571 ehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~ 611 (942)
T KOG0205|consen 571 EHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVAD 611 (942)
T ss_pred HHHHHHHHHHhhcCceecccCCCcccchhhcccccceeecc
Confidence 55566777777777789999999999999999987644443
No 274
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=73.14 E-value=30 Score=31.09 Aligned_cols=88 Identities=8% Similarity=0.060 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~ 174 (260)
++...|...++.+-++++++-......-..+.+.+++. ++.+...+. .+....-.-++..|++ ++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~~-----~e~~~~~~~l~~~G~~----~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVTE-----EDARSCVNDLRARGIG----AVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCH-----HHHHHHHHHHHHCCCC----EEECCh
Confidence 45556666667677889988765544333443555553 222221110 0112223333445664 889999
Q ss_pred HhhHHHHHHcCCeEEEEcCC
Q 024956 175 VIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 175 ~~Dv~~a~~~G~~~i~~~~~ 194 (260)
.. ...|+.+|+..+++.++
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 75 68899999999999874
No 275
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=72.28 E-value=19 Score=29.43 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=13.2
Q ss_pred ccEEEEecCCccccC
Q 024956 9 MSCVILDLDGTLLNT 23 (260)
Q Consensus 9 ~k~vifD~DGTL~d~ 23 (260)
.++++||+||||.+.
T Consensus 158 ~~~~~~D~dgtl~~~ 172 (300)
T PHA02530 158 PKAVIFDIDGTLAKM 172 (300)
T ss_pred CCEEEEECCCcCcCC
Confidence 578999999999974
No 276
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=72.19 E-value=2.5 Score=33.32 Aligned_cols=11 Identities=55% Similarity=0.751 Sum_probs=7.5
Q ss_pred EEecCCccccC
Q 024956 13 ILDLDGTLLNT 23 (260)
Q Consensus 13 ifD~DGTL~d~ 23 (260)
+||+||||.+.
T Consensus 1 ~lDyDGTL~p~ 11 (235)
T PF02358_consen 1 FLDYDGTLAPI 11 (235)
T ss_dssp EEE-TTTSS--
T ss_pred CcccCCccCCC
Confidence 69999999965
No 277
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=71.83 E-value=1.7 Score=35.67 Aligned_cols=24 Identities=46% Similarity=0.833 Sum_probs=22.9
Q ss_pred CCccccccccccccCCccccCCCCC
Q 024956 235 EPWYIGGPVVKGLGRGSKVLGIPTG 259 (260)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.|+.+.|-++.|+++| +.+|.|||
T Consensus 184 ~py~i~G~Vv~G~~~G-r~lGfPTa 207 (304)
T COG0196 184 RPYSIEGKVVHGQKLG-RTLGFPTA 207 (304)
T ss_pred CCeEEEEEEEcccccc-cccCCCcc
Confidence 6899999999999999 99999998
No 278
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=70.73 E-value=1.7 Score=35.49 Aligned_cols=24 Identities=42% Similarity=0.879 Sum_probs=22.0
Q ss_pred CCccccccccccccCCccccCCCCC
Q 024956 235 EPWYIGGPVVKGLGRGSKVLGIPTG 259 (260)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.|+.+.|.+..|.|+|. .+|.|||
T Consensus 167 r~y~i~G~Vv~G~~~Gr-~lGfPTa 190 (288)
T TIGR00083 167 RPYFICGTVIHGQKLGR-TLGFPTA 190 (288)
T ss_pred hhhccceEEEecCCCcc-cccCceE
Confidence 78999999999999996 5899997
No 279
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.46 E-value=6.3 Score=23.94 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~ 183 (260)
.+++++.+|+ ++++||...|+++.+-
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 4678888887 7999999999998753
No 280
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=70.34 E-value=20 Score=28.31 Aligned_cols=82 Identities=15% Similarity=0.316 Sum_probs=51.2
Q ss_pred CCCcEEEEeCCCh---HhHHHHHHhhc-CCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH--hhHH
Q 024956 106 HGVPMALASNSHR---ATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGVV 179 (260)
Q Consensus 106 ~g~~i~i~s~~~~---~~~~~~l~~~~-gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~--~Dv~ 179 (260)
.++.+.+++.+.. +.++....+.+ .+.+-|-.+++. ....|.|..-+++++..+++ ++.|||.+ .+-.
T Consensus 29 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isP---N~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd 102 (276)
T PF01993_consen 29 EDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISP---NAAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKD 102 (276)
T ss_dssp SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S----TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHH
T ss_pred CCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECC---CCCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHH
Confidence 3677888876643 22333321221 333323333332 23567788899999999987 99999999 3678
Q ss_pred HHHHcCCeEEEEcC
Q 024956 180 AGKAAGMEVVAVPS 193 (260)
Q Consensus 180 ~a~~~G~~~i~~~~ 193 (260)
..+..|+.+|.+..
T Consensus 103 ~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 103 ALEEEGFGYIIVKA 116 (276)
T ss_dssp HHHHTT-EEEEETT
T ss_pred HHHhcCCcEEEEec
Confidence 89999999999976
No 281
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=69.77 E-value=19 Score=30.63 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChH------------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~------------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l 158 (260)
.+++.+..=|+.|.+.|+.+++.||.... .++... ..+++. |........-...||.....+..+
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-ANLGVP--IQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-HhcCCc--eEEeeeccCCcccCcchhHHHHHH
Confidence 34566677889999999999999977432 122222 223332 222222233357899988888888
Q ss_pred HHcC----CCCCcEEEEec---------------CHhhHHHHHHcCCeEE
Q 024956 159 KRLN----MEPSSSLVIED---------------SVIGVVAGKAAGMEVV 189 (260)
Q Consensus 159 ~~l~----~~~~~~~~vGD---------------~~~Dv~~a~~~G~~~i 189 (260)
+.++ +.-...+|+|| |..|...|.++|+.+.
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 6654 33445567776 2358888999987643
No 282
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=68.15 E-value=12 Score=29.65 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
.+.+++++++++|+.++++|++....++..+ +.+++.
T Consensus 25 ~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~ 61 (249)
T TIGR01485 25 RLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLL 61 (249)
T ss_pred HHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCC
Confidence 4457888899999999999999999888777 656654
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=67.80 E-value=9.8 Score=28.54 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=47.2
Q ss_pred CCccHHHHHHHHH---HCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH---cCCCC
Q 024956 92 ALPGANRLIKHLS---CHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR---LNMEP 165 (260)
Q Consensus 92 ~~~~~~~~l~~l~---~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~---l~~~~ 165 (260)
......++++.|. +.+-++++++..+...-...+.+.+|+. +...... +++-++..+++ .|++
T Consensus 59 I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~--i~~~~~~--------~~~e~~~~i~~~~~~G~~- 127 (176)
T PF06506_consen 59 IPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD--IKIYPYD--------SEEEIEAAIKQAKAEGVD- 127 (176)
T ss_dssp E---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E--EEEEEES--------SHHHHHHHHHHHHHTT---
T ss_pred ECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc--eEEEEEC--------CHHHHHHHHHHHHHcCCc-
Confidence 3344455555554 4567888887665443222332556652 1222111 12444555544 4554
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
++||++.. ...|+..|++++++.++
T Consensus 128 ---viVGg~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 128 ---VIVGGGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp ---EEEESHHH-HHHHHHTTSEEEESS--
T ss_pred ---EEECCHHH-HHHHHHcCCcEEEEEec
Confidence 89999975 78999999999999773
No 284
>PTZ00174 phosphomannomutase; Provisional
Probab=67.53 E-value=9.6 Score=30.32 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=27.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
.|...+.|++++++|+.+++.|+++...+...+
T Consensus 24 s~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 24 TQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 344568899999999999999999988776655
No 285
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=65.64 E-value=50 Score=29.83 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~ 174 (260)
++...|...++.+-++++++-......-..+.+.+++. ++.+...+. -+....-.-++..|++ ++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~-----~e~~~~v~~lk~~G~~----~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTE-----EDARGQINELKANGIE----AVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCH-----HHHHHHHHHHHHCCCC----EEEcCc
Confidence 45556666667777899998765544333443555553 222221110 0112223344455665 889998
Q ss_pred HhhHHHHHHcCCeEEEEcC
Q 024956 175 VIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 175 ~~Dv~~a~~~G~~~i~~~~ 193 (260)
.. ...|+.+|+..+++.+
T Consensus 164 ~~-~~~A~~~g~~g~~~~s 181 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYS 181 (538)
T ss_pred hH-HHHHHHhCCceEEecC
Confidence 87 6899999999998876
No 286
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=62.89 E-value=32 Score=28.55 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=55.5
Q ss_pred cCCCCccHHHHHHHHHHC----CCcEEEEeCCChHhHHH---HHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956 89 KVKALPGANRLIKHLSCH----GVPMALASNSHRATIES---KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~----g~~i~i~s~~~~~~~~~---~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l 161 (260)
.-.+.|++.++++.|.+. .++.+++||+-.-.... .+.+.+|+.-.-+.++.+. ..++.+. +
T Consensus 49 G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH---------sP~r~l~-~- 117 (389)
T KOG1618|consen 49 GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH---------SPFRLLV-E- 117 (389)
T ss_pred cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc---------ChHHHHh-h-
Confidence 467889999999999998 79999999884433222 2213344432223333221 2334443 2
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (260)
Q Consensus 162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~ 190 (260)
..-++++++|++. -.+-|+..|++.|.
T Consensus 118 -~~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 118 -YHYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred -hhhceEEEecCCc-HHHHhhccCcccee
Confidence 2457899999654 34668888887664
No 287
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=62.28 E-value=33 Score=28.89 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHCC--CcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 95 GANRLIKHLSCHG--VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 95 ~~~~~l~~l~~~g--~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
++.++.++|+++| ..++++|+....-++... + +. +-+.++++++ +|+.+++|.
T Consensus 52 ~avkiydeL~~~GedveVA~VsG~~~~~v~ad~-~---I~-------------------~qld~vl~~~--~~~~~i~Vs 106 (344)
T PF04123_consen 52 GAVKIYDELKAEGEDVEVAVVSGSPDVGVEADR-K---IA-------------------EQLDEVLSKF--DPDSAIVVS 106 (344)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCCCchhhHH-H---HH-------------------HHHHHHHHhC--CCCEEEEEe
Confidence 4556788888876 667888887765443222 1 00 2334455554 567999999
Q ss_pred cCHhhHHHHH
Q 024956 173 DSVIGVVAGK 182 (260)
Q Consensus 173 D~~~Dv~~a~ 182 (260)
|+..|-...-
T Consensus 107 DGaeDE~vlP 116 (344)
T PF04123_consen 107 DGAEDERVLP 116 (344)
T ss_pred cChhhhhhhH
Confidence 9999866543
No 288
>PLN02887 hydrolase family protein
Probab=61.85 E-value=14 Score=33.50 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
.+.+...+.|++++++|+.+++.|++....+...+ +.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 45678899999999999999999999999888777 666653
No 289
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=60.71 E-value=5 Score=33.94 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.5
Q ss_pred cccEEEEecCCccccCH
Q 024956 8 LMSCVILDLDGTLLNTD 24 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~ 24 (260)
.-|.+.||+||||+++.
T Consensus 74 ~~K~i~FD~dgtlI~t~ 90 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTK 90 (422)
T ss_pred CcceEEEecCCceeecC
Confidence 45789999999999874
No 290
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=60.27 E-value=15 Score=28.59 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~ 142 (260)
+.++|.+|++. +.+++||+++-..+..-+ ....+...||.+++..
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl-~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL-GGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH-STTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH-cccchHhhCCeeecCC
Confidence 46889999987 999999999998877666 2223445577776543
No 291
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=60.21 E-value=69 Score=26.94 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHC-CCc-EEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH---HHHHHHHcCCCCCcEEE
Q 024956 96 ANRLIKHLSCH-GVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI---FLEAAKRLNMEPSSSLV 170 (260)
Q Consensus 96 ~~~~l~~l~~~-g~~-i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~---~~~~l~~l~~~~~~~~~ 170 (260)
+..++++|++. ++. .+++|+.........+ +.+++...++..+++......+.-... +.+++++ ..|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-DLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLE--EKPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-HhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHH--cCCCEEEE
Confidence 35577788775 343 4667777766666666 557776433333322111111111122 3334444 35777888
Q ss_pred EecCHh---hHHHHHHcCCeEEEEcC
Q 024956 171 IEDSVI---GVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 171 vGD~~~---Dv~~a~~~G~~~i~~~~ 193 (260)
.||... -..+|+..|++.+.+..
T Consensus 93 ~gd~~~~la~a~aa~~~~ipv~h~~~ 118 (365)
T TIGR00236 93 QGDTTTTLAGALAAFYLQIPVGHVEA 118 (365)
T ss_pred eCCchHHHHHHHHHHHhCCCEEEEeC
Confidence 899764 34567778999988754
No 292
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=59.60 E-value=75 Score=24.09 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHC--CCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 95 GANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 95 ~~~~~l~~l~~~--g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
.+..++++|+++ +.++.+-|.+...... .. +.+ .+.....+. +-..+...+..++.. .|+-+++++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg~~~-~~-~~~--~~~v~~~~~------P~D~~~~~~rfl~~~--~P~~~i~~E 103 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTGREM-AR-KLL--PDRVDVQYL------PLDFPWAVRRFLDHW--RPDLLIWVE 103 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCHHHH-HH-GG---GGG-SEEE---------SSHHHHHHHHHHH----SEEEEES
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCchHHH-HH-HhC--CCCeEEEEe------CccCHHHHHHHHHHh--CCCEEEEEc
Confidence 467788888876 7888877776555322 11 222 112233332 222357888888886 678889998
Q ss_pred cCH--hhHHHHHHcCCeEEEEcC
Q 024956 173 DSV--IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 173 D~~--~Dv~~a~~~G~~~i~~~~ 193 (260)
... |=+..++..|++.+++|.
T Consensus 104 tElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 104 TELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----HHHHHH-----S-EEEEEE
T ss_pred cccCHHHHHHHhhcCCCEEEEee
Confidence 887 788899999999999997
No 293
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=59.59 E-value=19 Score=33.32 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=33.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
..+...+.|++++++|+++++.|++....+...+ +.+++.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 3456789999999999999999999999887777 767764
No 294
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=57.01 E-value=1.9 Score=34.53 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
+.-+|++.++|....+. +.++++|++...+....+ ..+.- ...+...+..+.+.... ..+-+-+..++-+.+++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~-D~LD~~~~i~~~RlyR~~C~~~~---g~yvKdls~~~~dL~~v 204 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL-DILDPDRKIISHRLYRDSCTLKD---GNYVKDLSVLGRDLSKV 204 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH-HHccCCCCeeeeeecccceEeEC---CcEEEEcceeccCcccE
Confidence 45678899999988887 889999998888877776 65543 23343333332221100 01111224456688899
Q ss_pred EEEecCHhhHHHHHHcCCe
Q 024956 169 LVIEDSVIGVVAGKAAGME 187 (260)
Q Consensus 169 ~~vGD~~~Dv~~a~~~G~~ 187 (260)
+.|+|++.--.+=-..|++
T Consensus 205 iIiDNsP~sy~~~p~NgIp 223 (262)
T KOG1605|consen 205 IIVDNSPQSYRLQPENGIP 223 (262)
T ss_pred EEEcCChHHhccCccCCCc
Confidence 9999999877666666664
No 295
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=56.34 E-value=5.6 Score=35.10 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 98 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
|..+.+++.+ +.+++|..++..++..+++++|.+.
T Consensus 137 e~~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~d~ 171 (525)
T PLN02588 137 EMFQVLKRGG-KRVGVSDLPQVMIDVFLRDYLEIEV 171 (525)
T ss_pred HHHHHHhhcC-cEEEEecCCHHHHHHHHHHhcCcce
Confidence 4444555544 5666666899999999988888654
No 296
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.14 E-value=1.2e+02 Score=26.22 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=40.3
Q ss_pred cceEEeccccCCCCCChHHHHHHHHHcC-CCCCcEEEEecCHhhHHHHH-------HcCCeEEEEcC
Q 024956 135 FSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIEDSVIGVVAGK-------AAGMEVVAVPS 193 (260)
Q Consensus 135 f~~i~~~~~~~~~kp~~~~~~~~l~~l~-~~~~~~~~vGD~~~Dv~~a~-------~~G~~~i~~~~ 193 (260)
||.|+ .|..+..+...+.|++.++--+ +.|++++||=|....-.+.. .+++..+.+.-
T Consensus 184 fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTK 249 (483)
T KOG0780|consen 184 FDVII-VDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTK 249 (483)
T ss_pred CcEEE-EeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEe
Confidence 56554 3566788888899999887765 78999999999885433322 24555555543
No 297
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=56.06 E-value=73 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRAT 120 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~ 120 (260)
-+|+..+-+.|+..|.++.++|+.....
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~ 89 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAP 89 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHH
Confidence 3689999999999999999999775544
No 298
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=54.43 E-value=16 Score=31.16 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.8
Q ss_pred cccccEEEEecCCccccC
Q 024956 6 KKLMSCVILDLDGTLLNT 23 (260)
Q Consensus 6 ~~~~k~vifD~DGTL~d~ 23 (260)
+.++.+|.||||+||...
T Consensus 24 l~~i~~~GfdmDyTL~~Y 41 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARY 41 (424)
T ss_pred hhcCcEEeeccccchhhh
Confidence 567999999999999965
No 299
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=54.42 E-value=7.5 Score=31.27 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.6
Q ss_pred cccEEEEecCCccccCH
Q 024956 8 LMSCVILDLDGTLLNTD 24 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~ 24 (260)
+-|++++|+|+||+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 45899999999998764
No 300
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=52.95 E-value=35 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=26.0
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
.++ ++++|++++++|++....+...+ ..+++.
T Consensus 23 ~~~-~~~~gi~~viaTGR~~~~v~~~~-~~l~l~ 54 (236)
T TIGR02471 23 LLR-GSGDAVGFGIATGRSVESAKSRY-AKLNLP 54 (236)
T ss_pred HHH-hcCCCceEEEEeCCCHHHHHHHH-HhCCCC
Confidence 455 47788999999999999999888 767764
No 301
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=52.62 E-value=26 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
+..++|.+.++++.+++.|+.+.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4456789999999999999999999999753
No 302
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=52.07 E-value=95 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=16.2
Q ss_pred EEEEecCCccccCHHHHHHHHHHHHHHcC
Q 024956 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (260)
Q Consensus 11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~ 39 (260)
+|+.|.|++...........+.+.+.++|
T Consensus 26 AvfID~~Nv~~~~~~~d~~~i~~~ls~~G 54 (160)
T TIGR00288 26 GLLVDGPNMLRKEFNIDLDEIREILSEYG 54 (160)
T ss_pred EEEEeCCccChhhhccCHHHHHHHHHhcC
Confidence 78899999974321111234444455555
No 303
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=48.52 E-value=65 Score=31.18 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=31.5
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
+.++.+.....+++|.+.+++.+++|+.+--...... +..|+
T Consensus 703 eNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVa-keCgm 744 (1140)
T KOG0208|consen 703 ENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVA-KECGM 744 (1140)
T ss_pred ecccccccHHHHHHHHhhcceEEEEcCCchheeeehh-hcccc
Confidence 3567788999999999999999999987655443333 44454
No 304
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.51 E-value=33 Score=26.93 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~ 132 (260)
+.+.+.+|++.|++++++|+.....+...- +.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~-~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQ-KSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHH-HhcCCC
Confidence 346788999999999999998887766555 667765
No 305
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=47.55 E-value=2.2e+02 Score=25.85 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred ccHHHHH-HHHHHCCCcEEEEeCCChHh----HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH---HHHcCC-C
Q 024956 94 PGANRLI-KHLSCHGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA---AKRLNM-E 164 (260)
Q Consensus 94 ~~~~~~l-~~l~~~g~~i~i~s~~~~~~----~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~---l~~l~~-~ 164 (260)
+++.+-+ +.+++.|.+++++++..... +...+ +..|+. .++.++...... |+ .+.+..+ +.+.+. .
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L-~~~g~~-v~~~v~p~~E~~--ks-l~~v~~~~~~l~~~~~~r 269 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLL-RQGGYE-VSDIVIPDAEAG--KT-IEVANGIWQRLGNEGFTR 269 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHH-HhCCCc-eEEEEeCCCccc--CC-HHHHHHHHHHHHhcCCCC
Confidence 4554444 34444566777777654322 22223 333442 233333222111 21 2333333 233443 3
Q ss_pred CCcEEEEecCH-hhHHHHHH----cCCeEEEEcC
Q 024956 165 PSSSLVIEDSV-IGVVAGKA----AGMEVVAVPS 193 (260)
Q Consensus 165 ~~~~~~vGD~~-~Dv~~a~~----~G~~~i~~~~ 193 (260)
.+-++.||-+. .|+..+-+ .|++.|.+++
T Consensus 270 ~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 270 SDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 45678899977 79988776 5999999887
No 306
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.34 E-value=11 Score=35.80 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=0.0
Q ss_pred ccccEEEEecCCccc
Q 024956 7 KLMSCVILDLDGTLL 21 (260)
Q Consensus 7 ~~~k~vifD~DGTL~ 21 (260)
.+-.+++||+||||.
T Consensus 505 a~~rll~LDyDGTL~ 519 (797)
T PLN03063 505 SNNRLLILGFYGTLT 519 (797)
T ss_pred ccCeEEEEecCcccc
No 307
>PLN02591 tryptophan synthase
Probab=46.31 E-value=1.5e+02 Score=23.73 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=54.1
Q ss_pred CCccHHHHHHHHHHCCCcEEEEe-CCCh-HhHHHHHHhhcCCccccceEEecccc-CCCCCChHHHHHHHHHcCCCCCcE
Q 024956 92 ALPGANRLIKHLSCHGVPMALAS-NSHR-ATIESKISYQHGWNESFSVIVGSDEV-RTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s-~~~~-~~~~~~l~~~~gl~~~f~~i~~~~~~-~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
+.+...++.+.+++.|+..+.+. -+.. +.++...+...|+- ..++...+ +.....+..+...+++..-..+--
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI----Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~P 191 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV----YLVSSTGVTGARASVSGRVESLLQELKEVTDKP 191 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE----EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCc
Confidence 34678888899999997766654 4443 33444442323332 33332222 221122344444443333223444
Q ss_pred EEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956 169 LVIEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 169 ~~vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
+++|=+. .|+..+...|...+.+.+
T Consensus 192 v~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 192 VAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred eEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 6666555 599999999998888876
No 308
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=46.04 E-value=20 Score=22.91 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=15.1
Q ss_pred ccEEEEecCCccccCHHHH
Q 024956 9 MSCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~ 27 (260)
.-.|+++-|||.+|+...+
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF 58 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFF 58 (78)
T ss_pred CcEEEEeCCCCEEccHHHH
Confidence 4568999999999886544
No 309
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.93 E-value=20 Score=23.07 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=15.1
Q ss_pred ccEEEEecCCccccCHHHH
Q 024956 9 MSCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~ 27 (260)
.-.|+++-|||.+|+...+
T Consensus 39 ~~~lvLeeDGT~Vd~EeyF 57 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDFF 57 (81)
T ss_pred ceEEEEecCCCEEccHHHH
Confidence 3578999999999886544
No 310
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=45.81 E-value=20 Score=22.66 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=14.9
Q ss_pred ccEEEEecCCccccCHHHH
Q 024956 9 MSCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~ 27 (260)
.-.|+++-|||.+++...+
T Consensus 38 ~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred CcEEEEecCCcEEccHHHH
Confidence 4568899999999876544
No 311
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=45.39 E-value=37 Score=28.67 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHC-CCcEE-EEeCCC--hHhHHHHHHhhcCCccccceEEeccccCCCCCChHH---HHHHHHHcCCCCCcEEEEecC
Q 024956 102 HLSCH-GVPMA-LASNSH--RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI---FLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 102 ~l~~~-g~~i~-i~s~~~--~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~---~~~~l~~l~~~~~~~~~vGD~ 174 (260)
+|++. ++.+. ++|+.. ..+-.... +-+++ ...+..+..+.....+.-... +..++++ ..|+-+++.||+
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~-~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~ 77 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFF-EGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLER--EKPDAVLVLGDR 77 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHH-HHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHH--HT-SEEEEETTS
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHH-hhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34444 45554 456665 55555555 66676 455666654332111111122 3333333 378999999999
Q ss_pred Hhh---HHHHHHcCCeEEEEcCC
Q 024956 175 VIG---VVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 175 ~~D---v~~a~~~G~~~i~~~~~ 194 (260)
..= ..+|...+++.+.+..|
T Consensus 78 ~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 78 NEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHTT-EEEEES--
T ss_pred chHHHHHHHHHHhCCCEEEecCC
Confidence 954 45677889999999876
No 312
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=44.98 E-value=60 Score=27.88 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~ 169 (260)
+.-.|++..++..+.+- +++++.|..........+ +.++-...|...+....+. -+.+. |.+-+...+.+.+.++
T Consensus 251 v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~-d~l~~~k~~~~~lfr~sc~--~~~G~-~ikDis~i~r~l~~vi 325 (390)
T COG5190 251 VSKRPELDYFLGKLSKI-HELVYFTASVKRYADPVL-DILDSDKVFSHRLFRESCV--SYLGV-YIKDISKIGRSLDKVI 325 (390)
T ss_pred EcCChHHHHHHhhhhhh-EEEEEEecchhhhcchHH-Hhccccceeehhhhcccce--eccCc-hhhhHHhhccCCCceE
Confidence 34568899999999888 899999999888777755 6555444444333332222 22233 4446666778888999
Q ss_pred EEecCHh
Q 024956 170 VIEDSVI 176 (260)
Q Consensus 170 ~vGD~~~ 176 (260)
+|.+++.
T Consensus 326 iId~~p~ 332 (390)
T COG5190 326 IIDNSPA 332 (390)
T ss_pred EeeCChh
Confidence 9999994
No 313
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=44.29 E-value=52 Score=20.53 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.4
Q ss_pred ccEEEEecCCccccCHHHHHHHHHHHHHHcC
Q 024956 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~ 39 (260)
-+.|.+|++|+-.-+.....+++..++.+++
T Consensus 17 ~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 17 GEKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CCeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 3459999999976667777788888887766
No 314
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.24 E-value=1.7e+02 Score=23.56 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=52.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEE-EeCCCh-HhHHHHHHhhcCCccccceEEeccccC-CC----CCChHHHHHHHHHcCC
Q 024956 91 KALPGANRLIKHLSCHGVPMAL-ASNSHR-ATIESKISYQHGWNESFSVIVGSDEVR-TG----KPSPDIFLEAAKRLNM 163 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i-~s~~~~-~~~~~~l~~~~gl~~~f~~i~~~~~~~-~~----kp~~~~~~~~l~~l~~ 163 (260)
.+.+...++++.+++.|+..++ ++-... +.+...+ +. ..-|-.+++..... .. .+-.+.++.+.+..+.
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~-~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~ 199 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIA-EK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK 199 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHH-Hh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC
Confidence 3446778899999999988664 444333 3344444 22 22233444433222 11 1112223333333232
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956 164 EPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 164 ~~~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
-+++|=+. .++..+..+|...+.+.+
T Consensus 200 ----pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 200 ----PVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ----CEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 36677655 588889999998888866
No 315
>PLN02580 trehalose-phosphatase
Probab=44.04 E-value=41 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
..+.+++.+.|+.|.+. .+++|+|+++...+...+
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 45567899999999998 689999999999888666
No 316
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=43.39 E-value=1.5e+02 Score=22.70 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=49.5
Q ss_pred HHHHHHHHHHCCCcEEEE-eCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956 96 ANRLIKHLSCHGVPMALA-SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~-s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~ 174 (260)
..=+-..|+.+|++++-+ ++-+.+.+...+ ...+ .|.+..|-......+...-+.+.+++.+..++-.++||-.
T Consensus 101 ~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-~~~~----pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 101 KNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-KKEK----PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcC----CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 333445566677777644 333444444444 3222 3555444434444444444555566666666667888888
Q ss_pred HhhHHHHHHcCCeEEEE
Q 024956 175 VIGVVAGKAAGMEVVAV 191 (260)
Q Consensus 175 ~~Dv~~a~~~G~~~i~~ 191 (260)
.-.-.-++..|.....-
T Consensus 176 ~~~~~~~~~~gad~~~~ 192 (197)
T TIGR02370 176 PVTQDWADKIGADVYGE 192 (197)
T ss_pred hcCHHHHHHhCCcEEeC
Confidence 74445678888765443
No 317
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=42.32 E-value=2e+02 Score=23.99 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD 173 (260)
+...++++.|.++|++++++.+......-..+....+-. +. -.++..-.-+..+++.. -++||.
T Consensus 195 e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~--~~--------l~~k~sL~e~~~li~~a------~l~I~~ 258 (334)
T COG0859 195 EHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNA--VI--------LAGKTSLEELAALIAGA------DLVIGN 258 (334)
T ss_pred HHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCc--cc--------cCCCCCHHHHHHHHhcC------CEEEcc
Confidence 368889999999986666665552222222231222111 11 12333333334444332 368888
Q ss_pred CHhhHHHHHHcCCeEEEEcC
Q 024956 174 SVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 174 ~~~Dv~~a~~~G~~~i~~~~ 193 (260)
...=++.|...|.++|.+-.
T Consensus 259 DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 259 DSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred CChHHHHHHHcCCCEEEEEC
Confidence 88888999999999888754
No 318
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=41.95 E-value=24 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=14.8
Q ss_pred ccEEEEecCCccccCHHHH
Q 024956 9 MSCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 9 ~k~vifD~DGTL~d~~~~~ 27 (260)
.-.|+++-|||.++....+
T Consensus 40 ~~~lvL~eDGTeVddEeYF 58 (78)
T cd01615 40 PVTLVLEEDGTEVDDEEYF 58 (78)
T ss_pred CeEEEEeCCCcEEccHHHH
Confidence 3468999999999876544
No 319
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=41.77 E-value=87 Score=26.36 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHH---------HHHHHHcCCCCC
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF---------LEAAKRLNMEPS 166 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~---------~~~l~~l~~~~~ 166 (260)
...++.+|++.|+.+.+.+- +.......+ +.+|+ +.+..+.. +..+. .... .+++++ ..|
T Consensus 16 Fk~~I~eL~~~GheV~it~R-~~~~~~~LL-~~yg~----~y~~iG~~-g~~~~-~Kl~~~~~R~~~l~~~~~~--~~p- 84 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITAR-DKDETEELL-DLYGI----DYIVIGKH-GDSLY-GKLLESIERQYKLLKLIKK--FKP- 84 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEe-ccchHHHHH-HHcCC----CeEEEcCC-CCCHH-HHHHHHHHHHHHHHHHHHh--hCC-
Confidence 45788999999987776655 445566677 77776 44432221 11110 1111 111122 233
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
+++.-..|+.-...|...|+++|.+...
T Consensus 85 Dv~is~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 85 DVAISFGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred CEEEecCcHHHHHHHHHhCCCeEEEecC
Confidence 3333344555566999999999999873
No 320
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=41.12 E-value=50 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRAT 120 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~ 120 (260)
.+.+.++++.+++.|+++.+.||.....
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~ 101 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPKD 101 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHH
Confidence 3568899999999999999999876543
No 321
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=40.86 E-value=33 Score=19.19 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 97 NRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 97 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
.++..+|.+.|++.+-+|...+......|
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL 37 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKL 37 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 47888999999999999988888777776
No 322
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.75 E-value=41 Score=23.18 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=25.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
.-.+.+.+.++.++++|.+++.+|+......
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 3446788999999999999999999876544
No 323
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=40.60 E-value=26 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.5
Q ss_pred cEEEEecCCccccCHHHH
Q 024956 10 SCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~ 27 (260)
-.|+++-|||.+++...+
T Consensus 43 ~~lvL~eDGT~VddEeyF 60 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYF 60 (80)
T ss_pred eEEEEecCCcEEccHHHH
Confidence 468899999999876544
No 324
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=39.95 E-value=1.9e+02 Score=25.20 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHhCCCCCHHHHHHHHHHHHHhhh-----------ccCCCCccHHHHHHHHHHCCCcEEEE-eCCC
Q 024956 64 EDYGLPCAKHEFVNEVYSMFSDHL-----------CKVKALPGANRLIKHLSCHGVPMALA-SNSH 117 (260)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~g~~i~i~-s~~~ 117 (260)
+..+...+.+++.+.+.+....+. .....+|.+.++++.+++.|+++.+. ||+.
T Consensus 48 e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 48 EINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred hhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 344555566777776666543221 13456789999999999999999985 8864
No 325
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=39.18 E-value=77 Score=29.42 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 024956 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~ 182 (260)
++.+++.+++.+..++..||+...+.++-
T Consensus 312 lRsIL~~~~i~~~d~l~~GDGSGGita~l 340 (675)
T PF14314_consen 312 LRSILKNLNIKYRDALCGGDGSGGITACL 340 (675)
T ss_pred HHHHHHhcCCCcceeEEEecCchHHHHHH
Confidence 57899999999999999999998886544
No 326
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.85 E-value=2e+02 Score=22.85 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCh--HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc-CCCCCcEEE
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHR--ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLV 170 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l-~~~~~~~~~ 170 (260)
+...++++.+++.|.+.+++.+... +.++..+ +. .+.|=. ++.+... +..-.......++++ .+.++..+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~---~~~~l~-msv~~~~-g~~~~~~~~~~i~~lr~~~~~~~i~ 189 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KL---SPLFIY-YGLRPAT-GVPLPVSVERNIKRVRNLVGNKYLV 189 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-Hh---CCCEEE-EEeCCCC-CCCchHHHHHHHHHHHHhcCCCCEE
Confidence 5778899999999999988876644 3344444 22 111111 1222111 111122222222222 122233477
Q ss_pred EecCH---hhHHHHHHcCCeEEEEcC
Q 024956 171 IEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 171 vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
+|=+. .++..+..+|...+.+.+
T Consensus 190 v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 190 VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 88766 688888899998888866
No 327
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=38.83 E-value=1.2e+02 Score=21.09 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=40.6
Q ss_pred ccHHHHHHH-HHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec-cccCCCCCChHHHHHHHHH
Q 024956 94 PGANRLIKH-LSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-DEVRTGKPSPDIFLEAAKR 160 (260)
Q Consensus 94 ~~~~~~l~~-l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~-~~~~~~kp~~~~~~~~l~~ 160 (260)
+.+.+.+++ +.+.++-++++|......+...+ +.+. ..+..++-- +.-+...|..+.+.+-.++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I-~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~~ 111 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAV-DAHT--RSIPAVLEIPSKDHPYDASKDSILRRARG 111 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHH-HhcC--CcCCEEEEECCCCCCCCCcccHHHHHHHH
Confidence 567788888 77778889999988888888787 5544 344554432 2234455555555444443
No 328
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.63 E-value=39 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 122 (260)
..-.+.+.+.++.++++|.+++.+|+.....+.
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 344578999999999999999999998766443
No 329
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=38.47 E-value=60 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHH
Q 024956 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l 125 (260)
..+.+++.++|+.|.+.. ..++|+|+.+...++..+
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 457788899999999882 349999999999887665
No 330
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.83 E-value=35 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=26.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
..+.+++.++++.+++.|+++.+-||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 445578999999999999999999999864
No 331
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.76 E-value=2.2e+02 Score=22.97 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCCCcEEEE------ecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956 152 DIFLEAAKRLNMEPSSSLVI------EDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW 219 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~v------GD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 219 (260)
+.=..++++++++ +++- |-...=+.+|+.+|++.+++.++.- ..+..++.+++++..++.
T Consensus 187 e~n~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~el~~~l~ 252 (256)
T TIGR00715 187 ELEKALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-----IPGVAIFDDISQLNQFVA 252 (256)
T ss_pred HHHHHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-----CCCCccCCCHHHHHHHHH
Confidence 3445666777765 3432 2225678999999999999988321 222456778888776654
No 332
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=37.71 E-value=2e+02 Score=23.61 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc
Q 024956 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT 198 (260)
Q Consensus 149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~ 198 (260)
++..-+.++.++.|. +. |-=|+..|+....-.|..++.+..|.+.+
T Consensus 225 SNs~rL~eiA~~~g~-~a---ylId~~~ei~~~w~~~~~~VGvTAGAStP 270 (294)
T COG0761 225 SNSNRLAEIAKRHGK-PA---YLIDDAEEIDPEWLKGVKTVGVTAGASTP 270 (294)
T ss_pred ccHHHHHHHHHHhCC-Ce---EEeCChHhCCHHHhcCccEEEEecCCCCC
Confidence 455677888888887 32 33377888888888888889888865443
No 333
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=37.56 E-value=2.2e+02 Score=24.16 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHCCCcEEEEe-CCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 94 PGANRLIKHLSCHGVPMALAS-NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s-~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
|=....|+.|++.|+.-++++ +...+.++..+.+..++. ++..+..+.. ..-....+..+.+.++. ..-+++-|
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~--~~I~y~~e~~--~lGTag~l~~a~~~l~~-~~f~v~~G 107 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLG--VRITYVVEKE--PLGTAGALKNALDLLGG-DDFLVLNG 107 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccC--CceEEEecCC--cCccHHHHHHHHHhcCC-CcEEEEEC
Confidence 566778899999987765554 666666766663322222 2333333322 22256788999998876 44677889
Q ss_pred cCHhh
Q 024956 173 DSVIG 177 (260)
Q Consensus 173 D~~~D 177 (260)
|...|
T Consensus 108 Dv~~~ 112 (358)
T COG1208 108 DVLTD 112 (358)
T ss_pred Ceeec
Confidence 99976
No 334
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=37.36 E-value=32 Score=22.05 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=14.5
Q ss_pred cEEEEecCCccccCHHHH
Q 024956 10 SCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~ 27 (260)
-.|+++-|||.+++...+
T Consensus 40 ~~lvL~eDGT~Vd~EeyF 57 (79)
T cd06538 40 SSLVLDEDGTGVDTEEFF 57 (79)
T ss_pred cEEEEecCCcEEccHHHH
Confidence 458999999999876544
No 335
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=37.22 E-value=1.2e+02 Score=24.59 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC-----------
Q 024956 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP----------- 165 (260)
Q Consensus 97 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~----------- 165 (260)
.++.+.+++.|+.+..+.-.+.- -.....+-.++.---..+++.-.....+-....++..++.+|++.
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~~-Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~eG 119 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEGL-PDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVFEG 119 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccCC-CcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCccc
Confidence 45667778888888877621111 000000111111000122222233344555677888888887751
Q ss_pred --------CcEEEEecCH-hhHHHHHHc
Q 024956 166 --------SSSLVIEDSV-IGVVAGKAA 184 (260)
Q Consensus 166 --------~~~~~vGD~~-~Dv~~a~~~ 184 (260)
.+++++|.|. +|.++++..
T Consensus 120 ~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 120 AGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred cccEEEeCCcEEEEEeccccchHHHHHH
Confidence 5678889988 687776653
No 336
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=37.16 E-value=1.4e+02 Score=23.23 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCcEEEEeCCChHhH--HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe---cCHhhHHHH
Q 024956 107 GVPMALASNSHRATI--ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE---DSVIGVVAG 181 (260)
Q Consensus 107 g~~i~i~s~~~~~~~--~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG---D~~~Dv~~a 181 (260)
|.++++++.+++.+. ...+...+ . .+.+ .--|.++.++.++.++|++.+++.++. ...+++...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~--~--------~~~v-~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKF--S--------CEEV-EIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhc--C--------ccce-EEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHH
Confidence 788988888887763 22221111 1 1111 123667899999999999998866654 445777777
Q ss_pred HHcCCeEEEEcC
Q 024956 182 KAAGMEVVAVPS 193 (260)
Q Consensus 182 ~~~G~~~i~~~~ 193 (260)
..-|-..+....
T Consensus 137 ~~~~~~~vil~~ 148 (210)
T COG2241 137 LENGRRLVILTP 148 (210)
T ss_pred HhCCceEEEeCC
Confidence 766666666655
No 337
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=36.87 E-value=86 Score=23.54 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=25.9
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
+..+.+.+.++++.+++.|+.+.+.||+...
T Consensus 72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 3455677899999999999999999999754
No 338
>PLN03017 trehalose-phosphatase
Probab=36.86 E-value=57 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=28.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
.+.++..+.|++|. ++++++|+|+++...+...+
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 46678899999999 67999999999999877554
No 339
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=36.80 E-value=2e+02 Score=22.21 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=49.1
Q ss_pred CCCcEEEEeCCChHh----HHHHHHhhcCCccccceEEeccccCCCCC----ChHHHHHHHHHcCCCCCcEEEEecCHhh
Q 024956 106 HGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKP----SPDIFLEAAKRLNMEPSSSLVIEDSVIG 177 (260)
Q Consensus 106 ~g~~i~i~s~~~~~~----~~~~l~~~~gl~~~f~~i~~~~~~~~~kp----~~~~~~~~l~~l~~~~~~~~~vGD~~~D 177 (260)
..--.+++|++.... ++..+ ...++. ||.++-....+...+ |...+..++..+. ..+++-+.+|++.-
T Consensus 70 ~dtltVLLTGR~e~~F~~lI~~ml-~s~~L~--Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~eI~IYeDR~~h 145 (197)
T PF10307_consen 70 PDTLTVLLTGRRESKFSSLIERML-ASKGLE--FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEEIRIYEDRPKH 145 (197)
T ss_pred CCeeEEEEeCCCchhHHHHHHHHH-hcCCCC--ccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCEEEEEcCCHHH
Confidence 345567889887533 34444 555665 788775543111111 2356677777777 77999999999999
Q ss_pred HHHHHHc
Q 024956 178 VVAGKAA 184 (260)
Q Consensus 178 v~~a~~~ 184 (260)
+...+..
T Consensus 146 vk~Fr~F 152 (197)
T PF10307_consen 146 VKGFRDF 152 (197)
T ss_pred HHHHHHH
Confidence 9988764
No 340
>PRK08304 stage V sporulation protein AD; Validated
Probab=36.76 E-value=1e+02 Score=25.89 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=45.5
Q ss_pred hhcCCccccceEEeccccCCCC---CC----hHHHHHHHHHcCCCCC--cEEEEecCHhhH----HHHHHcCCeEEEEcC
Q 024956 127 YQHGWNESFSVIVGSDEVRTGK---PS----PDIFLEAAKRLNMEPS--SSLVIEDSVIGV----VAGKAAGMEVVAVPS 193 (260)
Q Consensus 127 ~~~gl~~~f~~i~~~~~~~~~k---p~----~~~~~~~l~~l~~~~~--~~~~vGD~~~Dv----~~a~~~G~~~i~~~~ 193 (260)
..-.+..+||.++.....+... .. .++.+.++++.|++++ +.+++||..+-. ..++.+|+.+.-+..
T Consensus 30 ~~gpl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 30 GEGPLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYG 109 (337)
T ss_pred cCCCChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEec
Confidence 4445778999998776665432 22 2467778888899887 578899876422 356778887666654
No 341
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=36.47 E-value=2.6e+02 Score=23.47 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCh-Hh--HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 95 GANRLIKHLSCHGVPMALASNSHR-AT--IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~-~~--~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
...++++.|.+.|++++++.+... +. .+... +...-...++ -.++-+-.-+..++++.. ++|
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~-~~~~~~~~~~--------l~g~~sL~el~ali~~a~------l~v 267 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIA-QGCQTPPVTA--------LAGKTTFPELGALIDHAQ------LFI 267 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHH-HhcCCCcccc--------ccCCCCHHHHHHHHHhCC------EEE
Confidence 577888888888887776644322 21 12222 2111111111 113333444555555543 899
Q ss_pred ecCHhhHHHHHHcCCeEEEEcC
Q 024956 172 EDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 172 GD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
|....-+++|..+|.+++.+-.
T Consensus 268 ~nDSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 268 GVDSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred ecCCHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999887754
No 342
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.45 E-value=2e+02 Score=22.95 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~ 175 (260)
+.++++...++|++++++-+. +..++... +.+.-. | ...+.+...+.-. ++-...+++..+-...++++||=+.
T Consensus 94 ~~~ll~~~~~~~~~v~llG~~-~~v~~~a~-~~l~~~-y-~l~i~g~~~Gyf~--~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 94 WEALMARAGKEGTPVFLVGGK-PEVLAQTE-AKLRTQ-W-NVNIVGSQDGYFT--PEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHhcCCeEEEECCC-HHHHHHHH-HHHHHH-h-CCEEEEEeCCCCC--HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 345666667788999999444 44333222 222111 1 2111111122222 3444556666666667788888664
Q ss_pred --hhHHHHH
Q 024956 176 --IGVVAGK 182 (260)
Q Consensus 176 --~Dv~~a~ 182 (260)
-+.-+.+
T Consensus 168 PkQE~~~~~ 176 (243)
T PRK03692 168 PKQEIFMRD 176 (243)
T ss_pred cHHHHHHHH
Confidence 2444433
No 343
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=36.04 E-value=1.5e+02 Score=21.03 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHHHcCCCCC-cEEEEecC----H---hhHHHHHHcCCeEEEE
Q 024956 146 TGKPSPDIFLEAAKRLNMEPS-SSLVIEDS----V---IGVVAGKAAGMEVVAV 191 (260)
Q Consensus 146 ~~kp~~~~~~~~l~~l~~~~~-~~~~vGD~----~---~Dv~~a~~~G~~~i~~ 191 (260)
...|.++.+++.++.+|++++ .+++++++ . .-.-+++.+|..-+.+
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~i 128 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAI 128 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEE
Confidence 345667899999999999876 56667653 2 2233566678765544
No 344
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.15 E-value=45 Score=26.81 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCeEEEEcCC
Q 024956 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA---GMEVVAVPSL 194 (260)
Q Consensus 148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~---G~~~i~~~~~ 194 (260)
..+...+.+.|..+|++..++..|||.+.++..+-.. ....+.++.|
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 3467888999999999999999999999877664332 2556666653
No 345
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.06 E-value=56 Score=22.53 Aligned_cols=32 Identities=6% Similarity=0.009 Sum_probs=26.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
.--.+...+.++.++++|.+++.+|+......
T Consensus 57 SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 57 SGNTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CCCChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 34456889999999999999999999876644
No 346
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.80 E-value=2.4e+02 Score=22.70 Aligned_cols=97 Identities=8% Similarity=0.109 Sum_probs=51.8
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC---------------CCCCCh-HHHH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR---------------TGKPSP-DIFL 155 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~---------------~~kp~~-~~~~ 155 (260)
..+...++.+.+.+.+-++.+.++...-.. +. .......++-.++...+.. ..-|-. +.=.
T Consensus 113 ~V~d~~ea~~~~~~~~~rVflt~G~~~l~~--f~-~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~ 189 (257)
T COG2099 113 EVADIEEAAEAAKQLGRRVFLTTGRQNLAH--FV-AADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNK 189 (257)
T ss_pred EecCHHHHHHHHhccCCcEEEecCccchHH--Hh-cCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHH
Confidence 346788888888888755555555443221 22 2222223333333221110 111111 2234
Q ss_pred HHHHHcCCCCCcEEEE------ecCHhhHHHHHHcCCeEEEEcCC
Q 024956 156 EAAKRLNMEPSSSLVI------EDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 156 ~~l~~l~~~~~~~~~v------GD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
.++++.+++ ++.- |-...=+.+|+.+|+.++++.++
T Consensus 190 all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 190 ALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 455666665 3332 33445699999999999999884
No 347
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.79 E-value=1.7e+02 Score=25.16 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHHHHHHHHCC-Cc-EEEEeCCCh--HhHHHHHHhhcCCc-cccceEEeccccCCCCCChH-------HHHHHHHHcCCC
Q 024956 97 NRLIKHLSCHG-VP-MALASNSHR--ATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPD-------IFLEAAKRLNME 164 (260)
Q Consensus 97 ~~~l~~l~~~g-~~-i~i~s~~~~--~~~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~-------~~~~~l~~l~~~ 164 (260)
..++.++.+.+ +. .+++|+... +.....+ +.+++. +-++.-+..+ +.+-.+ .+..+++ ...
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~l-e~~~i~~pdy~L~i~~~----~~tl~~~t~~~i~~~~~vl~--~~k 92 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVL-ELFGIRKPDYDLNIMKP----GQTLGEITGNIIEGLSKVLE--EEK 92 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHH-HHhCCCCCCcchhcccc----CCCHHHHHHHHHHHHHHHHH--hhC
Confidence 45677777765 44 456687777 6777777 778876 4333333211 111112 2333444 357
Q ss_pred CCcEEEEecCHhhHH---HHHHcCCeEEEEcCC
Q 024956 165 PSSSLVIEDSVIGVV---AGKAAGMEVVAVPSL 194 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~---~a~~~G~~~i~~~~~ 194 (260)
|+-+++-||+..=+. +|....++...+-.|
T Consensus 93 PD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 93 PDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred CCEEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 889999999997665 445566777777664
No 348
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=34.74 E-value=1.2e+02 Score=21.48 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=38.4
Q ss_pred HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 024956 101 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180 (260)
Q Consensus 101 ~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~ 180 (260)
..|.+.|+..+.+..-..-.-. ....+.+....++.++...... . ..|..+++.+++++++++++.= ..+.+
T Consensus 7 ~~LqeMGItqW~Lr~P~~L~g~----~~i~lp~~~rLliVs~~~p~~~-~-~L~~dVLrsl~L~~~q~~~ltp--eq~~~ 78 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPEVLQGE----IAISLPESCRLLIVSDELPQLD-D-PLFQDVLRSLKLTPEQVLHLTP--EQLAM 78 (128)
T ss_dssp HHHHHCT--EEEES-GGGTS------S-----TT--EEEE-SS---TT-S-HHHHHHHHHTT--GGGEEEE-C--CGGGG
T ss_pred HHHHHcCCCeEEeCCccccCCC----ccccCcccceEEEEeCCCCCcc-C-hHHHHHHHHcCCCHHHhhccCH--HHHhh
Confidence 4577788888888654322111 1223444556666666554322 3 3999999999999999988743 33333
Q ss_pred HHHcCCeEEEEc
Q 024956 181 GKAAGMEVVAVP 192 (260)
Q Consensus 181 a~~~G~~~i~~~ 192 (260)
...-...-++..
T Consensus 79 L~~~~~~~~W~l 90 (128)
T PF03603_consen 79 LPEDHPCWCWFL 90 (128)
T ss_dssp S-TT-B-EEEEE
T ss_pred CcCCCCCcEEEc
Confidence 333333334443
No 349
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=34.55 E-value=1.8e+02 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=25.2
Q ss_pred cCCCCcc-HHHHHHHHHHCCCcEEEEeCCChH
Q 024956 89 KVKALPG-ANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 89 ~~~~~~~-~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
+..+.++ +.++++.+++.|+.+++.||+...
T Consensus 48 EPllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 48 EVLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred hHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3445666 589999999999999999999654
No 350
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=34.45 E-value=3.4e+02 Score=24.31 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCcEEEEecCHhhHHHHHH---cCCeEEEEcC
Q 024956 165 PSSSLVIEDSVIGVVAGKA---AGMEVVAVPS 193 (260)
Q Consensus 165 ~~~~~~vGD~~~Dv~~a~~---~G~~~i~~~~ 193 (260)
.-+++.||-++..+.+|.. .|.+++.+..
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 3489999999998888765 5677777643
No 351
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=34.04 E-value=2.8e+02 Score=23.12 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCh-H--hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 95 GANRLIKHLSCHGVPMALASNSHR-A--TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~-~--~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
...++++.|.+.|++++++.+... + ..+... ...+-.. ++. -.++.+-.-+..++++.. ++|
T Consensus 201 ~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~-~~~~~~~----~~~----l~g~~sL~el~ali~~a~------l~V 265 (344)
T TIGR02201 201 RFSALIDALHARGYEVVLTSGPDKDELAMVNEIA-QGCQTPR----VTS----LAGKLTLPQLAALIDHAR------LFI 265 (344)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHH-hhCCCCc----ccc----cCCCCCHHHHHHHHHhCC------EEE
Confidence 456788888877888776644321 1 122221 2221111 110 123434445555555543 788
Q ss_pred ecCHhhHHHHHHcCCeEEEEcC
Q 024956 172 EDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 172 GD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
|....-+++|..+|.+++.+-.
T Consensus 266 s~DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 266 GVDSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred ecCCHHHHHHHHcCCCEEEEEC
Confidence 8888899999999999887754
No 352
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.97 E-value=2e+02 Score=21.40 Aligned_cols=74 Identities=8% Similarity=-0.027 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhH--HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATI--ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~--~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
=+.++++.+.+.+.+++++-+...... ...+.+.+ -...+.+...+.- +++..+.+++..+-...++++||
T Consensus 36 l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~y-----P~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRY-----PGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHC-----CCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEE
Confidence 355677777788889999966654322 22331211 1222222111211 33455555555554555778887
Q ss_pred cCH
Q 024956 173 DSV 175 (260)
Q Consensus 173 D~~ 175 (260)
=+.
T Consensus 109 lG~ 111 (172)
T PF03808_consen 109 LGA 111 (172)
T ss_pred CCC
Confidence 776
No 353
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.45 E-value=64 Score=22.21 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 122 (260)
.......+.++.++++|.+++++|+.....+.
T Consensus 64 g~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 64 GETRELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred ccchhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 34467889999999999999999987766543
No 354
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=33.28 E-value=2.7e+02 Score=22.82 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC-CCCC---ChHHHHHHHHHcCCCCCcEEEE
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR-TGKP---SPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~-~~kp---~~~~~~~~l~~l~~~~~~~~~v 171 (260)
..++|+..++.||-+..+.-.+.+.++..++ ...-.. -..|+...... ..-+ -......+.++..++ -++..
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~-AAee~~-sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--ValHL 79 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVE-TAAEMR-SPVILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LALHL 79 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHH-HHHHhC-CCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 4678888888888888887777777776663 221111 12233221111 1111 112344455555554 23333
Q ss_pred --ecCHhhHHHHHHcCCeEEEEcCC
Q 024956 172 --EDSVIGVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 172 --GD~~~Dv~~a~~~G~~~i~~~~~ 194 (260)
|.++.++..|-.+|+.+|++..+
T Consensus 80 DHg~~~e~i~~ai~~GFtSVM~DgS 104 (282)
T TIGR01858 80 DHHESLDDIRQKVHAGVRSAMIDGS 104 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEeecCC
Confidence 33457888899999999999874
No 355
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.64 E-value=2.9e+02 Score=22.88 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~ 174 (260)
...++++.+.+.|++++++.+.........+....+ +.++ + -.++.+-.-+..++++.. ++||..
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~-----~~~~--~--l~g~~sL~el~ali~~a~------l~I~~D 259 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLP-----GELR--N--LAGETSLDEAVDLIALAK------AVVTND 259 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCC-----cccc--c--CCCCCCHHHHHHHHHhCC------EEEeeC
Confidence 677888888877777665543322222222212211 1111 1 123334445555555543 788888
Q ss_pred HhhHHHHHHcCCeEEEEcC
Q 024956 175 VIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 175 ~~Dv~~a~~~G~~~i~~~~ 193 (260)
..-+++|..+|.+++.+-.
T Consensus 260 SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 260 SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CHHHHHHHHcCCCEEEEEC
Confidence 8889999999999887754
No 356
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=32.51 E-value=1.8e+02 Score=20.91 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHh
Q 024956 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 176 (260)
Q Consensus 147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~ 176 (260)
..+..+..+..+...|++.+.++.-..+.+
T Consensus 52 ~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~ 81 (155)
T PF02698_consen 52 GRSEAEAMRDYLIELGVPEERIILEPKSTN 81 (155)
T ss_dssp TS-HHHHHHHHHHHT---GGGEEEE----S
T ss_pred CCCHHHHHHHHHHhcccchheeEccCCCCC
Confidence 566677788888777887766665444333
No 357
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.01 E-value=1.1e+02 Score=21.20 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=8.9
Q ss_pred HHHHHHHHCCCcEEEEeCC
Q 024956 98 RLIKHLSCHGVPMALASNS 116 (260)
Q Consensus 98 ~~l~~l~~~g~~i~i~s~~ 116 (260)
++++...+.+..++++|..
T Consensus 41 ~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHHHcCCCEEEEccc
Confidence 4444444444445555444
No 358
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=31.97 E-value=1.1e+02 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 97 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
....+.|++.|++++.-+....+...+.+ ..+|.
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~-~~lg~ 75 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLS-KSLGF 75 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHH-HHCCC
Confidence 45778899999999999988888777777 65554
No 359
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.92 E-value=3e+02 Score=22.96 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHh-HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD 173 (260)
...++++.|.+.|++++++ ++..+. ....+....+-.. ...++. -.++.+-.-+..++++. -++||.
T Consensus 201 ~~a~l~~~l~~~~~~vvl~-Gg~~e~~~~~~i~~~~~~~~-~~~~~~----l~g~~sL~el~ali~~a------~l~I~n 268 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLF-GSAKDHEAGNEILAALNTEQ-QAWCRN----LAGETQLEQAVILIAAC------KAIVTN 268 (348)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCHHhHHHHHHHHHhccccc-ccceee----ccCCCCHHHHHHHHHhC------CEEEec
Confidence 4577888887778876665 443332 2222212221110 011111 11333334445555553 388999
Q ss_pred CHhhHHHHHHcCCeEEEEcC
Q 024956 174 SVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 174 ~~~Dv~~a~~~G~~~i~~~~ 193 (260)
...-+++|..+|.+++.+-.
T Consensus 269 DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 269 DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred CChHHHHHHHhCCCEEEEEC
Confidence 88999999999999887744
No 360
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=31.89 E-value=2.1e+02 Score=21.10 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccc
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDE 143 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~ 143 (260)
..+.++|+.++..|.+++++-.+..... .+ ..+|+ ...++.++..+.
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~t--ll-n~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNT--LL-NYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHH--HH-HHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHH--HH-HHhCCCcceeEEEEeCCh
Confidence 3567899999999999999987776653 45 77788 455777776543
No 361
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=31.43 E-value=62 Score=25.86 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCC--CcEEEEecCH-hhHHHHHHcCCeE
Q 024956 152 DIFLEAAKRLNMEP--SSSLVIEDSV-IGVVAGKAAGMEV 188 (260)
Q Consensus 152 ~~~~~~l~~l~~~~--~~~~~vGD~~-~Dv~~a~~~G~~~ 188 (260)
+.|..-|+.+|++| .++-||.|+- +-...|..+|+.+
T Consensus 89 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEV 128 (279)
T cd00733 89 ELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEV 128 (279)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 67788899999988 4799999998 7888999999753
No 362
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=31.17 E-value=2.2e+02 Score=25.57 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=38.0
Q ss_pred hhcCCccccceEEeccccCCCCCChHHHHHHHHHc----------CCCCCcEEEEecCHhhHHHHHH---cCCeEEEEc
Q 024956 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL----------NMEPSSSLVIEDSVIGVVAGKA---AGMEVVAVP 192 (260)
Q Consensus 127 ~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l----------~~~~~~~~~vGD~~~Dv~~a~~---~G~~~i~~~ 192 (260)
+.++...+-..++..+....+++..+.+...+... ..++-+++.||-++..+.+|.. .|.+++.+.
T Consensus 164 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 164 EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 34444433333344344444555555444443322 2445689999999998888665 567777664
No 363
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.48 E-value=66 Score=22.27 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
.+...+.++.++++|.+++++|++.....
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChh
Confidence 35688899999999999999999766543
No 364
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=30.39 E-value=53 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=13.2
Q ss_pred HHHHHHHcCCCCCcEEEEec
Q 024956 154 FLEAAKRLNMEPSSSLVIED 173 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD 173 (260)
+.+.|++.|+.+.+++.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHHTTT--TT-EEEETT
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 45667777888888998887
No 365
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=30.39 E-value=55 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCC--CcEEEEecCH-hhHHHHHHcCCeE
Q 024956 152 DIFLEAAKRLNMEP--SSSLVIEDSV-IGVVAGKAAGMEV 188 (260)
Q Consensus 152 ~~~~~~l~~l~~~~--~~~~~vGD~~-~Dv~~a~~~G~~~ 188 (260)
+.|..-|+.+|++| .++-||.|+- +-...|..+|+.+
T Consensus 90 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 129 (293)
T TIGR00388 90 ELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEV 129 (293)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 66778889999988 4799999998 7888999999753
No 366
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.25 E-value=1.9e+02 Score=20.00 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=47.7
Q ss_pred HHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec-CH-
Q 024956 99 LIKHLSCHGVPMALASNS-HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED-SV- 175 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD-~~- 175 (260)
+-..|+..|+.+...-.. +.+.+.... ...+ -+.+..+.......+....+...+++.+.+ .-.+++|- .+
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a-~~~~----~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~ 92 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAA-IQED----VDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPP 92 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcC----CCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCH
Confidence 445688899988777543 333333333 2222 255554443343444334444445555443 44566663 33
Q ss_pred hhHHHHHHcCCeEEEEc
Q 024956 176 IGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 176 ~Dv~~a~~~G~~~i~~~ 192 (260)
.+...++++|+..+.-.
T Consensus 93 ~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 93 EDYELLKEMGVAEIFGP 109 (122)
T ss_pred HHHHHHHHCCCCEEECC
Confidence 45777889998655443
No 367
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=29.78 E-value=95 Score=21.01 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHG 130 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g 130 (260)
.+.++..++++.|+.++.+|......+...+ +..+
T Consensus 47 ~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~-~~~~ 81 (124)
T PF00578_consen 47 ELNELYKKYKDKGVQVIGISTDDPEEIKQFL-EEYG 81 (124)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSSHHHHHHHH-HHHT
T ss_pred HHHHHhhhhccceEEeeecccccccchhhhh-hhhc
Confidence 4456777788888999999988888777666 5555
No 368
>PLN02423 phosphomannomutase
Probab=29.50 E-value=89 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
.+...+.+++|+++ ++++++|++....+...+
T Consensus 26 ~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 26 TPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred CHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 34556889999977 999999999766665444
No 369
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=29.49 E-value=69 Score=25.67 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCC--cEEEEecCH-hhHHHHHHcCCeE
Q 024956 152 DIFLEAAKRLNMEPS--SSLVIEDSV-IGVVAGKAAGMEV 188 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~--~~~~vGD~~-~Dv~~a~~~G~~~ 188 (260)
+.|..-|+.+|++|. ++-||.|+- +-...|..+|+.+
T Consensus 93 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 132 (283)
T PRK09348 93 ELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEV 132 (283)
T ss_pred HHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEE
Confidence 677888999999884 799999998 7888999999753
No 370
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.42 E-value=2.1e+02 Score=20.39 Aligned_cols=15 Identities=20% Similarity=-0.037 Sum_probs=8.3
Q ss_pred hHHHHHHcCCeEEEE
Q 024956 177 GVVAGKAAGMEVVAV 191 (260)
Q Consensus 177 Dv~~a~~~G~~~i~~ 191 (260)
|.+.++..|+..++-
T Consensus 104 ~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 104 VEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHcCCCEEEC
Confidence 445666666544433
No 371
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=29.42 E-value=1.2e+02 Score=21.57 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 024956 102 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181 (260)
Q Consensus 102 ~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a 181 (260)
.|++.|+..+.+..-..-.-+ ....+.+....++.++.... ..++ .|..+++.++++++++.++. +..+.+.
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~----~~i~lp~~~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~q~~~lt--~eq~~~L 78 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE----IAISLPEHIRLVIVAEELPA-LTDP-LLQDVLRSLTLSPDQVLCLT--PEQVAML 78 (128)
T ss_pred HHHHcCCceEEecCccccCCC----ccccCCccceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHHHeeeeC--HHHHhhC
Confidence 567778888888754332211 11123333445555554442 2233 89999999999999999863 3444443
No 372
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.29 E-value=74 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 122 (260)
...+.+.+.++.++++|.+++.+|+.....+.
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 34567899999999999999999998766544
No 373
>PRK08005 epimerase; Validated
Probab=29.24 E-value=2.8e+02 Score=21.63 Aligned_cols=96 Identities=10% Similarity=0.152 Sum_probs=57.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChH--hHHHHHHhhcCCccccceEE--ecc-ccCCCCCChHHHHHHHHHcCCCC
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRA--TIESKISYQHGWNESFSVIV--GSD-EVRTGKPSPDIFLEAAKRLNMEP 165 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~--~~~~~l~~~~gl~~~f~~i~--~~~-~~~~~kp~~~~~~~~l~~l~~~~ 165 (260)
+..+...++++++++.|.+.++.-|-... .++..+ . ..|.+. +.+ ..+-.+=.+..++++.+.....+
T Consensus 90 Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l-~------~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~ 162 (210)
T PRK08005 90 ESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLA-L------QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP 162 (210)
T ss_pred cCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH-H------hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc
Confidence 33356789999999999999999876543 233333 2 345442 222 12222333455555554333333
Q ss_pred CcEEEEecCHh--hHHHHHHcCCeEEEEcC
Q 024956 166 SSSLVIEDSVI--GVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 166 ~~~~~vGD~~~--Dv~~a~~~G~~~i~~~~ 193 (260)
+.-+-|+-+.| .+..+..+|...+...+
T Consensus 163 ~~~I~VDGGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 163 AAECWADGGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred cCCEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 33488888884 67788899998776654
No 374
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=29.10 E-value=82 Score=19.49 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCCCcEEEEec
Q 024956 154 FLEAAKRLNMEPSSSLVIED 173 (260)
Q Consensus 154 ~~~~l~~l~~~~~~~~~vGD 173 (260)
+...|++.|+.+.+++.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHHcCCCCCCEEEEcc
Confidence 56777888888889999887
No 375
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=28.97 E-value=27 Score=11.78 Aligned_cols=6 Identities=50% Similarity=1.680 Sum_probs=2.7
Q ss_pred CCCccc
Q 024956 222 PPFQDW 227 (260)
Q Consensus 222 ~~~~~~ 227 (260)
|+|.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 344444
No 376
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=28.72 E-value=70 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCH
Q 024956 152 DIFLEAAKRLNMEPSSSLVIEDSV 175 (260)
Q Consensus 152 ~~~~~~l~~l~~~~~~~~~vGD~~ 175 (260)
+.+.++|+.|.++|.+++-+.+..
T Consensus 46 ~tL~~iC~~LeCqpgDiley~~d~ 69 (73)
T COG3655 46 STLEKICKALECQPGDILEYVPDS 69 (73)
T ss_pred HHHHHHHHHcCCChhheeEEecCC
Confidence 678999999999999998875544
No 377
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.56 E-value=1.5e+02 Score=20.09 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 97 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 97 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
.+...+|++.|+++++|+-++.+.++... +..++
T Consensus 3 ~~~~~~l~~~gv~lv~I~~g~~~~~~~f~-~~~~~ 36 (115)
T PF13911_consen 3 SRRKPELEAAGVKLVVIGCGSPEGIEKFC-ELTGF 36 (115)
T ss_pred hHhHHHHHHcCCeEEEEEcCCHHHHHHHH-hccCC
Confidence 34577888899999999998886676666 54444
No 378
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=28.28 E-value=1.9e+02 Score=19.40 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.8
Q ss_pred hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (260)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 125 (260)
...-...-|..++++.++.-..+++++..+.+...+..+
T Consensus 15 vkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~i 53 (100)
T COG1911 15 VKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDI 53 (100)
T ss_pred HhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHH
Confidence 344566779999999999888889999888888887777
No 379
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.74 E-value=3.4e+02 Score=22.21 Aligned_cols=81 Identities=14% Similarity=-0.007 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChH--hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRA--TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~--~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
...++++.|.+.|++++++.++..+ ..+... +..+ .. .+ .++.+-.-+..++++. -++||
T Consensus 199 ~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~-~~~~--~~---~l------~g~~sL~el~ali~~a------~l~I~ 260 (319)
T TIGR02193 199 RWRELARLLLARGLQIVLPWGNDAEKQRAERIA-EALP--GA---VV------LPKMSLAEVAALLAGA------DAVVG 260 (319)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHH-hhCC--CC---ee------cCCCCHHHHHHHHHcC------CEEEe
Confidence 5778888887777777666444333 122222 2211 10 11 1233333444444443 37888
Q ss_pred cCHhhHHHHHHcCCeEEEEcC
Q 024956 173 DSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 173 D~~~Dv~~a~~~G~~~i~~~~ 193 (260)
....-+++|..+|.+++.+-.
T Consensus 261 ~DSgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 261 VDTGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred CCChHHHHHHHcCCCEEEEEC
Confidence 888889999999999987754
No 380
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.73 E-value=1.8e+02 Score=21.48 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEE-eCCChHhHHHHHHhhcCCcc
Q 024956 92 ALPGANRLIKHLSCHGVPMALA-SNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~-s~~~~~~~~~~l~~~~gl~~ 133 (260)
=.||..+-.++|+++|+..+++ |-+++..+...- +.++-..
T Consensus 63 HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~-k~~g~~~ 104 (171)
T KOG0541|consen 63 HVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWA-KSLGAND 104 (171)
T ss_pred cCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHH-hhcCccc
Confidence 3689999999999999876555 555555444444 6666544
No 381
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=27.66 E-value=46 Score=21.30 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.9
Q ss_pred cEEEEecCCccccCHHHH
Q 024956 10 SCVILDLDGTLLNTDGMF 27 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~ 27 (260)
-.++++=|||.++.+..+
T Consensus 41 ~~lvL~eDGT~VddEeyF 58 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEEYF 58 (78)
T ss_dssp CEEEETTTTCBESSCHHH
T ss_pred cEEEEeCCCcEEccHHHH
Confidence 457899999999975443
No 382
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.43 E-value=78 Score=21.73 Aligned_cols=28 Identities=4% Similarity=0.018 Sum_probs=22.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSH 117 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~ 117 (260)
.--.+.+.+.++.++++|.+++.+|+..
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3445678899999999999999999754
No 383
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=27.24 E-value=2.7e+02 Score=22.43 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~ 175 (260)
+..+++...+.|.+++++-+.... .+....+... .+-...+.+...|.-+|..+ +.++++.+-...++++||=+.
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp~V-~~~a~~~l~~--~~p~l~ivg~h~GYf~~~e~--~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKPGV-AEQAAAKLRA--KYPGLKIVGSHDGYFDPEEE--EAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred HHHHHHHhCccCceEEEecCCHHH-HHHHHHHHHH--HCCCceEEEecCCCCChhhH--HHHHHHHHhcCCCEEEEeCCC
Confidence 455556666667888888554443 3322211111 11112222222344444333 466666665666788888776
No 384
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.22 E-value=3.3e+02 Score=21.83 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHh-hcCCccccceEEeccccCCCC----------C-ChHHHHHH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY-QHGWNESFSVIVGSDEVRTGK----------P-SPDIFLEA 157 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~-~~gl~~~f~~i~~~~~~~~~k----------p-~~~~~~~~ 157 (260)
........++.+.+.+.+..-+++|-+...... .. . ...-..++-.+........+. | +.+.=..+
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~-f~-~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al 189 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSKNLPP-FV-PAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRAL 189 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHH-Hh-hcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHH
Confidence 344567888888888877556666666555332 21 1 111111222222211111111 1 12344667
Q ss_pred HHHcCCCCCcEEEEecC-----HhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956 158 AKRLNMEPSSSLVIEDS-----VIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (260)
Q Consensus 158 l~~l~~~~~~~~~vGD~-----~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 218 (260)
+++++++ +++-=|| ..=+.+|+.+|++.+++.++.-. .+...+.+++++.+++
T Consensus 190 ~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-----~~~~~~~~~~e~l~~l 247 (249)
T PF02571_consen 190 FRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP-----YGDPVVETIEELLDWL 247 (249)
T ss_pred HHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-----CCCcccCCHHHHHHHH
Confidence 7888775 3332222 25688999999999999883222 2333467777776654
No 385
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.02 E-value=4.3e+02 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=11.6
Q ss_pred HHHHHcCCeEEEEcCCC
Q 024956 179 VAGKAAGMEVVAVPSLP 195 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~ 195 (260)
+-|+..|.++..-..|+
T Consensus 253 ~RA~e~gVQvMVEGPGH 269 (431)
T PRK13352 253 KRAREAGVQVMVEGPGH 269 (431)
T ss_pred HHHHHcCCeEEEECCCC
Confidence 45788898876665543
No 386
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.68 E-value=2.7e+02 Score=20.66 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChH
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
+.++++.+.+++.+++++-+....
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~ 58 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEV 58 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHH
Confidence 456778888888999999554443
No 387
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.63 E-value=77 Score=19.87 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEe
Q 024956 91 KALPGANRLIKHLSCHGVPMALAS 114 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s 114 (260)
.-.+...++++.++++|.+++.+|
T Consensus 58 g~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 58 GRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEe
Confidence 345779999999999999999998
No 388
>PLN02834 3-dehydroquinate synthase
Probab=26.62 E-value=4.4e+02 Score=23.15 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCChHh-----HHHHHHhhcCCc-cccceEEeccccCCCCCChHHHHHHHHH---cCCC-CCcEEEEecCH
Q 024956 106 HGVPMALASNSHRAT-----IESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKR---LNME-PSSSLVIEDSV 175 (260)
Q Consensus 106 ~g~~i~i~s~~~~~~-----~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~~~~~~l~~---l~~~-~~~~~~vGD~~ 175 (260)
.|.++.++|+..... +...+ +..|+. ..++.++.. +...|..+.+..+++. .+++ .+-++.||-+.
T Consensus 99 ~g~rvlIVtD~~v~~~~~~~v~~~L-~~~g~~~~v~~~v~~~---gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGs 174 (433)
T PLN02834 99 HGKRVLVVTNETVAPLYLEKVVEAL-TAKGPELTVESVILPD---GEKYKDMETLMKVFDKALESRLDRRCTFVALGGGV 174 (433)
T ss_pred CCCEEEEEECccHHHHHHHHHHHHH-HhcCCceEEEEEEecC---CcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChH
Confidence 356888998775432 22233 333442 223333322 1123445666666444 4555 34688899987
Q ss_pred -hhHHHHH----HcCCeEEEEcC
Q 024956 176 -IGVVAGK----AAGMEVVAVPS 193 (260)
Q Consensus 176 -~Dv~~a~----~~G~~~i~~~~ 193 (260)
.|+..+. .-|++.|.+++
T Consensus 175 v~D~ak~~A~~y~rgiplI~VPT 197 (433)
T PLN02834 175 IGDMCGFAAASYQRGVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 7988643 45888888877
No 389
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=26.43 E-value=1.9e+02 Score=23.94 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
-.|-=.++++++++.|.++.+++.++-.-..... . -..-.|.+++.. +-|..-.-..+++-+|-+..--+..
T Consensus 162 dRpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~---~-~~s~vD~~~GiG----GaPEGVlaAaAlkclGG~~qgrL~~ 233 (309)
T cd01516 162 DRPRHAALIEEIREAGARIKLIPDGDVAAAIATA---L-PGSGVDVLMGIG----GAPEGVLAAAALKCLGGEMQGRLLP 233 (309)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHHHHh---C-CCCCeeEEEECC----CChHHHHHHHHHHhCCceeEEEECC
Confidence 3466678999999999999999999875443222 1 112346665543 2232233333445555333222222
Q ss_pred ecCHhhHHHHHHcCC
Q 024956 172 EDSVIGVVAGKAAGM 186 (260)
Q Consensus 172 GD~~~Dv~~a~~~G~ 186 (260)
.+..+.+.++..|+
T Consensus 234 -~~~~e~~r~~~~Gi 247 (309)
T cd01516 234 -RNEEERARAREMGI 247 (309)
T ss_pred -CCHHHHHHHHHcCC
Confidence 22445555666665
No 390
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.35 E-value=3.1e+02 Score=21.23 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChHhHH-HHHHhh-cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC--CcEEEE
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRATIE-SKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP--SSSLVI 171 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~-~~l~~~-~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~--~~~~~v 171 (260)
...+++.|++. ++++++++-...... ..+ .+ .|. ..-.+.++..++ -+.+...+.++++.... -+.++|
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l-~~~~g~--~i~~v~TG~~CH---~da~m~~~ai~~l~~~~~~~Dll~i 102 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRL-RKLPGE--PIIGVETGKGCH---LDASMNLEAIEELVLDFPDLDLLFI 102 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHH-HhCCCC--eeEEeccCCccC---CcHHHHHHHHHHHhhcCCcCCEEEE
Confidence 45678888888 999999987665332 233 33 222 122333333332 45678888888877543 378887
Q ss_pred ecCH
Q 024956 172 EDSV 175 (260)
Q Consensus 172 GD~~ 175 (260)
...=
T Consensus 103 Es~G 106 (202)
T COG0378 103 ESVG 106 (202)
T ss_pred ecCc
Confidence 6654
No 391
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=25.87 E-value=4.4e+02 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHcCCCCCcEEEEecCH--hhHHHHHHcCCeEEEEcC
Q 024956 155 LEAAKRLNMEPSSSLVIEDSV--IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 155 ~~~l~~l~~~~~~~~~vGD~~--~Dv~~a~~~G~~~i~~~~ 193 (260)
..+++. |.+|++++|-|... .++..|...|+..+-+++
T Consensus 87 ~~al~a-G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 87 ELALAA-GFPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred HHHHHc-CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 334444 89999999999888 589999999998887876
No 392
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=25.71 E-value=3.3e+02 Score=23.64 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=12.2
Q ss_pred HHHHHcCCeEEEEcCCCC
Q 024956 179 VAGKAAGMEVVAVPSLPK 196 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~~~~ 196 (260)
.-|+.+|.++..-..|+-
T Consensus 250 ~rA~e~gVQvMVEGPGHv 267 (423)
T TIGR00190 250 ERAREADVQCMVEGPGHV 267 (423)
T ss_pred HHHHHcCCeEEEECCCCC
Confidence 457888998766655443
No 393
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=25.50 E-value=30 Score=24.34 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=12.8
Q ss_pred ccccEEEEecCCccc
Q 024956 7 KLMSCVILDLDGTLL 21 (260)
Q Consensus 7 ~~~k~vifD~DGTL~ 21 (260)
+.+..|.||+.+||-
T Consensus 43 ~~P~iV~FDmK~Tld 57 (128)
T PRK13717 43 NAPVTAAFNMKQTVD 57 (128)
T ss_pred CCCeEEEEehHHHHH
Confidence 467899999999994
No 394
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=25.47 E-value=2.3e+02 Score=19.45 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=21.3
Q ss_pred cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh
Q 024956 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR 45 (260)
Q Consensus 10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~ 45 (260)
+.|-+|=||=|+|...--.+....+.++.|+.++.+
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Ltd~ 42 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIELTDE 42 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S--HH
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCCHH
Confidence 578899999999875544445555555556554443
No 395
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=25.46 E-value=2.2e+02 Score=19.29 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh
Q 024956 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR 45 (260)
Q Consensus 8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~ 45 (260)
.-+-|-.|-||-|.++..--......+.++.++.++.+
T Consensus 7 ~gk~i~~D~dGyL~~~~dW~E~vAe~lA~~e~i~LT~e 44 (111)
T COG2920 7 EGKEIETDEDGYLKDSEDWSEKVAEALAEREGIELTEE 44 (111)
T ss_pred cCeEEeecccchhcChhhhCHHHHHHHHHHhccCccHH
Confidence 34678899999999875544444455555555544443
No 396
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.35 E-value=3.9e+02 Score=22.12 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-cccc-C--CCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEV-R--TGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (260)
Q Consensus 98 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-~~~~-~--~~kp~~~~~~~~l~~l~~~~~~~~~vGD 173 (260)
++++++++.|.+++....+ .+..+ .+ ...|. |.++. +... + ...+.-..+.++.+..+++ ++.-|+
T Consensus 100 ~~i~~lk~~g~~v~~~v~s-~~~a~-~a-~~~Ga----D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGG 169 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVAS-VALAK-RM-EKAGA----DAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGG 169 (307)
T ss_pred HHHHHHHHcCCEEEEEcCC-HHHHH-HH-HHcCC----CEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECC
Confidence 5788888888766554333 33333 22 33453 55442 1111 1 1223456677777777665 777776
Q ss_pred CH--hhHHHHHHcCCeEEEEcC
Q 024956 174 SV--IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 174 ~~--~Dv~~a~~~G~~~i~~~~ 193 (260)
=. .|+..+...|...|++.+
T Consensus 170 I~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 170 IADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred CCCHHHHHHHHHcCCCEeecch
Confidence 54 688888889999888876
No 397
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=25.16 E-value=1.9e+02 Score=18.26 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 024956 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (260)
Q Consensus 145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~ 186 (260)
+..-|-...++.+.+++++++.....|-+.=-.+..++.+|-
T Consensus 23 pE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 23 PESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred cccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccc
Confidence 344566688999999999999888887766667777777774
No 398
>PHA03050 glutaredoxin; Provisional
Probab=25.12 E-value=2.3e+02 Score=19.27 Aligned_cols=83 Identities=2% Similarity=0.016 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 97 NRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 97 ~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
.+.++.+-+. .++.++|...-.+ ++..| +..++.. -|..+-. ....+..+....+.+.-|...=-.+|||
T Consensus 3 ~~~v~~~i~~-~~V~vys~~~CPyC~~ak~~L-~~~~i~~~~~~~i~i----~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 3 EEFVQQRLAN-NKVTIFVKFTCPFCRNALDIL-NKFSFKRGAYEIVDI----KEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred HHHHHHHhcc-CCEEEEECCCChHHHHHHHHH-HHcCCCcCCcEEEEC----CCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 4566666655 4788887665554 34455 5555532 1222221 1222344555555565564433578888
Q ss_pred cCH----hhHHHHHHcC
Q 024956 173 DSV----IGVVAGKAAG 185 (260)
Q Consensus 173 D~~----~Dv~~a~~~G 185 (260)
+.. .|+..+...|
T Consensus 77 g~~iGG~ddl~~l~~~g 93 (108)
T PHA03050 77 KTSIGGYSDLLEIDNMD 93 (108)
T ss_pred CEEEeChHHHHHHHHcC
Confidence 854 5777777666
No 399
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=25.01 E-value=78 Score=20.46 Aligned_cols=19 Identities=5% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHcCCCCCcEEEEecC
Q 024956 156 EAAKRLNMEPSSSLVIEDS 174 (260)
Q Consensus 156 ~~l~~l~~~~~~~~~vGD~ 174 (260)
.-++.+|+.|+++++|-|.
T Consensus 63 ~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 63 ITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCHHHcCCCCCcEEEEecC
Confidence 3689999999999999886
No 400
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=24.98 E-value=3e+02 Score=23.11 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=45.0
Q ss_pred hhcCCccccceEEeccccCCCCCC-------hHHHHHHHHHcCCCCC--cEEEEecCHhh----HHHHHHcCCeEEEEcC
Q 024956 127 YQHGWNESFSVIVGSDEVRTGKPS-------PDIFLEAAKRLNMEPS--SSLVIEDSVIG----VVAGKAAGMEVVAVPS 193 (260)
Q Consensus 127 ~~~gl~~~f~~i~~~~~~~~~kp~-------~~~~~~~l~~l~~~~~--~~~~vGD~~~D----v~~a~~~G~~~i~~~~ 193 (260)
..-.+..+||.++.....+...+. .++.+.++++.+++++ +.+++||.++- ...++.+|++..-++.
T Consensus 24 ~~gpl~~~fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ 103 (327)
T TIGR02845 24 GEGPLGDYFDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPFLGLYG 103 (327)
T ss_pred ccCCChhhCCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEec
Confidence 344577899999876666544332 2456778888899887 67889996531 2356778887655554
No 401
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.97 E-value=2.9e+02 Score=20.43 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEE
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV 139 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~ 139 (260)
+..+.+.++++.|..++-+|..+....+... ++.++. |....
T Consensus 52 ~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~-~k~~L~--f~LLS 93 (157)
T COG1225 52 DFRDLLEEFEKLGAVVLGISPDSPKSHKKFA-EKHGLT--FPLLS 93 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCHHHHHHHH-HHhCCC--ceeeE
Confidence 3567778888889999999988888777676 778875 44443
No 402
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=24.95 E-value=3.9e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCCCcEEEEecCHh---hHHHHHHcCCeEEEEcCC
Q 024956 163 MEPSSSLVIEDSVI---GVVAGKAAGMEVVAVPSL 194 (260)
Q Consensus 163 ~~~~~~~~vGD~~~---Dv~~a~~~G~~~i~~~~~ 194 (260)
..|+-++..||+.. -..+|...|++++.+..+
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 46888999999974 456678889999988764
No 403
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=24.87 E-value=1.9e+02 Score=24.13 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
-.|-=.++++++++.|.++.+++.++-.-..... . -..-+|..++.. +-|..-.-..+++-+|-+..--+ +
T Consensus 165 dRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~---~-~~s~vD~~~GiG----GaPEGVlaAaAlkclGG~mqgRL-~ 235 (319)
T PRK09479 165 DRPRHEELIAEIREAGARVKLISDGDVAGAIATA---F-PDTGVDILMGIG----GAPEGVLAAAALKCLGGEMQGRL-L 235 (319)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHHHHh---c-CCCCeeEEEEcC----cChHHHHHHHHHHhcCceeEEeE-C
Confidence 3466678999999999999999999876543222 1 112346665543 22322333344455553332222 1
Q ss_pred ecCHhhHHHHHHcCC
Q 024956 172 EDSVIGVVAGKAAGM 186 (260)
Q Consensus 172 GD~~~Dv~~a~~~G~ 186 (260)
=.+..+...++..|+
T Consensus 236 ~~~~~e~~r~~~~Gi 250 (319)
T PRK09479 236 PRNEEERARAKKMGI 250 (319)
T ss_pred CCCHHHHHHHHHcCC
Confidence 133445555556665
No 404
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.81 E-value=97 Score=23.43 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=25.7
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
--.+.+.+.++.++++|.+++.+|+......
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 4457899999999999999999999765544
No 405
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.80 E-value=1.6e+02 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.5
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSH 117 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~ 117 (260)
+..+.|++.++++.+++.|+.+.+.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 45667899999999999999999999985
No 406
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=24.59 E-value=1.4e+02 Score=23.40 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCCCccHH-HHHHHHHHCCCcEEEEeCCChH-----hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956 90 VKALPGAN-RLIKHLSCHGVPMALASNSHRA-----TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (260)
Q Consensus 90 ~~~~~~~~-~~l~~l~~~g~~i~i~s~~~~~-----~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~ 163 (260)
..+.|++. ++.+.+++.|++.+|+...... .++..+ +.+|+.-.|...+++=.- .+-..+.+.++.+|-
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~~----~~~p~i~~F~~~fGk 132 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLEE----NGNPQIDEFAEYFGK 132 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHH-HhcCceeecCccccccCC----CCChhHHHHHHHhCC
Confidence 35566655 6667777799999999877777 677777 778877777777665221 223566777777885
Q ss_pred CCCcEEEEecCH-hhHHHHHHcCCe
Q 024956 164 EPSSSLVIEDSV-IGVVAGKAAGME 187 (260)
Q Consensus 164 ~~~~~~~vGD~~-~Dv~~a~~~G~~ 187 (260)
+ +==+.+.|+. .|+.-.|.+=+.
T Consensus 133 P-~~ei~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 133 P-KVEIEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred c-eEEEEecCCcEEEEEEEecCCCc
Confidence 4 3333444433 555555554443
No 407
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.29 E-value=89 Score=23.24 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=25.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT 120 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~ 120 (260)
....+.+.+.++.++++|.+++.+|+.....
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3445789999999999999999999876553
No 408
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=24.25 E-value=30 Score=21.80 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=8.2
Q ss_pred EEecCCccc
Q 024956 13 ILDLDGTLL 21 (260)
Q Consensus 13 ifD~DGTL~ 21 (260)
=|||+|.|+
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 499999999
No 409
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.20 E-value=80 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
|.-.+.|+.|.+.|.+|.|.+-..-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~eF~ 27 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSEFQ 27 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHHHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHHHH
Confidence 45578899999999999998754433
No 410
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.99 E-value=3.9e+02 Score=21.61 Aligned_cols=98 Identities=8% Similarity=0.073 Sum_probs=50.3
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCC--hHhHHHHHHhhcCCccccceEEeccc-cCCCCCChHHHHHHHHHcCCCCCcE
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSH--RATIESKISYQHGWNESFSVIVGSDE-VRTGKPSPDIFLEAAKRLNMEPSSS 168 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~--~~~~~~~l~~~~gl~~~f~~i~~~~~-~~~~kp~~~~~~~~l~~l~~~~~~~ 168 (260)
+.+...++++.++++|+..+.+.+-. .+.++...+...|+- .+++... .+....-+..+...++++.-..+.-
T Consensus 129 P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFI----Y~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~P 204 (263)
T CHL00200 129 PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCI----YLVSTTGVTGLKTELDKKLKKLIETIKKMTNKP 204 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcE----EEEcCCCCCCCCccccHHHHHHHHHHHHhcCCC
Confidence 44677888888888887766654332 233443331222222 2222221 1221122233444443333222334
Q ss_pred EEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956 169 LVIEDSV---IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 169 ~~vGD~~---~Dv~~a~~~G~~~i~~~~ 193 (260)
++||=+. .++..+..+|...+.+.+
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 5666555 477777888888887765
No 411
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.91 E-value=1.4e+02 Score=19.54 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHC--CCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956 94 PGANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNE 133 (260)
Q Consensus 94 ~~~~~~l~~l~~~--g~~i~i~s~~~~~~~~~~l~~~~gl~~ 133 (260)
-...++++.+++. ..+++++|+.......... -..|...
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~-~~~g~~~ 96 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEA-LRAGADD 96 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHH-HHTTESE
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHH-HHCCCCE
Confidence 4566788888774 4888888877665444444 3455543
No 412
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=23.76 E-value=42 Score=25.65 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=42.7
Q ss_pred EEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCCCCCcccccCCCCCCCccccc-cccc
Q 024956 168 SLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGG-PVVK 245 (260)
Q Consensus 168 ~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (260)
+=|=|+|. ..+++|+..|.....+.+.. ...-+++.++|.+.+. .+.++.+.|+..+ -..+
T Consensus 138 ~~y~g~SF~~Hl~~Ark~G~~~~~~dSf~--------l~~DVDtpeDL~e~~~---------hG~g~~~~~~~~~~~~~V 200 (210)
T COG1920 138 PRYGGVSFLRHLEEARKRGLVVLTYDSFG--------LSADVDTPEDLVEAFI---------HGVGPATKRALAKLRLAV 200 (210)
T ss_pred ccccCccHHHHHHHHHHcCCEEEEecccc--------eecCCCCHHHHHHHHH---------hCCcHHHHHHHHheeeEe
Confidence 34567777 79999999999888887732 2234566667766653 4445555555332 2345
Q ss_pred cccCCccc
Q 024956 246 GLGRGSKV 253 (260)
Q Consensus 246 ~~~~~~~~ 253 (260)
.+|++|.+
T Consensus 201 ~~~~~~~~ 208 (210)
T COG1920 201 SPGRPSVV 208 (210)
T ss_pred cCCCCccc
Confidence 55665544
No 413
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=23.71 E-value=3.6e+02 Score=21.08 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=51.3
Q ss_pred HCCCcEEEEeCC---ChHhHHHHHHhhc-CCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHh--hH
Q 024956 105 CHGVPMALASNS---HRATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI--GV 178 (260)
Q Consensus 105 ~~g~~i~i~s~~---~~~~~~~~l~~~~-gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~--Dv 178 (260)
+.++.+-++..+ .++.++....+.+ .+.. |.++.... ...-|.|..-+++++..+++ ++.|||.+. --
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~~p--Dfvi~isP-NpaaPGP~kARE~l~~s~~P---aiiigDaPg~~vk 102 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEFNP--DFVIYISP-NPAAPGPKKAREILSDSDVP---AIIIGDAPGLKVK 102 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhcCC--CEEEEeCC-CCCCCCchHHHHHHhhcCCC---EEEecCCccchhH
Confidence 346778777655 2333333332222 1222 44433222 23556778889999988876 899999992 33
Q ss_pred HHHHHcCCeEEEEcC
Q 024956 179 VAGKAAGMEVVAVPS 193 (260)
Q Consensus 179 ~~a~~~G~~~i~~~~ 193 (260)
...+.-|+.+|.+..
T Consensus 103 deleeqGlGYIivk~ 117 (277)
T COG1927 103 DELEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCeEEEecC
Confidence 457788999998876
No 414
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.69 E-value=3.6e+02 Score=21.03 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEec--CHhhHHH-HHHcCCeEEEEcC
Q 024956 148 KPSPDIFLEAAKRLNMEPSSSLVIED--SVIGVVA-GKAAGMEVVAVPS 193 (260)
Q Consensus 148 kp~~~~~~~~l~~l~~~~~~~~~vGD--~~~Dv~~-a~~~G~~~i~~~~ 193 (260)
-++.+.++++++..+++ +++.|+ +..|+.. +...|+..+.+.+
T Consensus 183 g~~~~~~~~i~~~~~ip---via~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIP---VIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CCCHHHHHHHHhhCCCC---EEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 35667788888876654 888884 4479988 8889999888765
No 415
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.68 E-value=1e+02 Score=22.95 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE 122 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 122 (260)
...+.+.++++.++++|.+++.+|+.......
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 34567889999999999999999998766543
No 416
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=23.57 E-value=1.5e+02 Score=23.57 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=26.5
Q ss_pred HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec
Q 024956 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (260)
Q Consensus 99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~ 141 (260)
+++...+.++.++++|+++...+.+.+ ...++. ..|.++++
T Consensus 27 ~l~~~~~~~~~~v~~TGRs~~~~~~~~-~~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 27 LLEQQARPEILFVYVTGRSLESVLRLL-REYNLP-QPDYIITS 67 (247)
T ss_dssp HHHHHHCCGEEEEEE-SS-HHHHHHHH-HHCT-E-E-SEEEET
T ss_pred HHHHhhCCCceEEEECCCCHHHHHHHH-HhCCCC-CCCEEEec
Confidence 444345566889999999999999888 666663 35666665
No 417
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=23.19 E-value=97 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=26.7
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
+..+.|.+.++++.+++.|..+.+.||+..-
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 4566799999999999999999999999643
No 418
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.13 E-value=93 Score=22.61 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=25.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
.--.+.+.+.++.++++|.+++.+|+......
T Consensus 89 sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 89 SGNSKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 33457889999999999999999998765543
No 419
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=23.13 E-value=80 Score=25.14 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=33.6
Q ss_pred CCCCh----HHHHHHHHHcCCCC--CcEEEEecCH-hhHHHHHHcCCeEEEEc
Q 024956 147 GKPSP----DIFLEAAKRLNMEP--SSSLVIEDSV-IGVVAGKAAGMEVVAVP 192 (260)
Q Consensus 147 ~kp~~----~~~~~~l~~l~~~~--~~~~~vGD~~-~Dv~~a~~~G~~~i~~~ 192 (260)
-||+| +.|..-++.+|++| .++-||.|+- |--..|-..|+. |+.+
T Consensus 85 lKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWld 136 (298)
T COG0752 85 IKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWLD 136 (298)
T ss_pred ecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEEc
Confidence 35555 55677789999998 4799999998 777778888864 4443
No 420
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=23.13 E-value=2.2e+02 Score=20.28 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred HHHHHCCCcEEEEeCCChHhH-HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 024956 101 KHLSCHGVPMALASNSHRATI-ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179 (260)
Q Consensus 101 ~~l~~~g~~i~i~s~~~~~~~-~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~ 179 (260)
..|.+.|+.-+.+.....-.- +.. ...+.+....++.++... ...++-.|..+++.++++++++.++. +..+.
T Consensus 7 ~~LqqMGItqW~Lr~P~~L~g~e~~---~i~lp~~~rLliV~~~~p-~~~~~~L~~dVLrsm~l~~~q~~~lt--~eq~~ 80 (132)
T PRK06100 7 QYLQEMGISQWELIHPERLAGYQPP---TQDLDSDCKLLLVAPQCP-QNETALLFERILKSMQLELSQARHIE--PEQLS 80 (132)
T ss_pred HHHHHcCCceEEecCCccccCcccc---cccCCccceEEEEcCCCC-CccchHHHHHHHHHcCCCHHHeeeeC--HHHHh
Confidence 457778888888876442211 100 022333344555555433 22233489999999999999999873 45555
Q ss_pred HHHHcCCeEEEEcC
Q 024956 180 AGKAAGMEVVAVPS 193 (260)
Q Consensus 180 ~a~~~G~~~i~~~~ 193 (260)
+.-.-+...++...
T Consensus 81 ~L~~~~~~~~W~lg 94 (132)
T PRK06100 81 QLGYHSLEWVWFAG 94 (132)
T ss_pred hCCcCCCCeEEECC
Confidence 55555555555544
No 421
>PLN02334 ribulose-phosphate 3-epimerase
Probab=22.89 E-value=3.7e+02 Score=20.97 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=51.6
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCC--ChHhHHHHHHhhcCCccccceEEe-ccccCC--CCCChHHHHHHHHHcCCCC-C
Q 024956 93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVG-SDEVRT--GKPSPDIFLEAAKRLNMEP-S 166 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~gl~~~f~~i~~-~~~~~~--~kp~~~~~~~~l~~l~~~~-~ 166 (260)
.+...+.++++++.|..+.+.++. +.+..+..+ ...+. |.+.. +-..+. .+..+..+..+.+....-+ .
T Consensus 101 ~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~-~~~~~----Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~ 175 (229)
T PLN02334 101 TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV-EKGLV----DMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPEL 175 (229)
T ss_pred chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-hccCC----CEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCC
Confidence 345678999999999989888873 333333232 21012 33211 111111 2222334433332221111 2
Q ss_pred cEEEE-ecCHhhHHHHHHcCCeEEEEcC
Q 024956 167 SSLVI-EDSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 167 ~~~~v-GD~~~Dv~~a~~~G~~~i~~~~ 193 (260)
.+.++ |=+..++.....+|...+.+.+
T Consensus 176 ~I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred cEEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 34455 4566899999999999888766
No 422
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.53 E-value=4.1e+02 Score=21.26 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG 172 (260)
.+...++++.|.++|++++++.+.........+.+..+- ..++ . -.++.+..-+..+++... ++||
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~----~~~~--~--~~~~~~l~e~~~li~~~~------l~I~ 204 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAALGG----PRVV--N--LAGKTSLRELAALLARAD------LVVT 204 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCC----Cccc--c--CcCCCCHHHHHHHHHhCC------EEEe
Confidence 346888899998888888877654433322223122210 1111 0 112333444555555543 5666
Q ss_pred cCHhhHHHHHHcCCeEEEEcC
Q 024956 173 DSVIGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 173 D~~~Dv~~a~~~G~~~i~~~~ 193 (260)
-...-+.+|...|.+++.+-.
T Consensus 205 ~Dsg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 205 NDSGPMHLAAALGTPTVALFG 225 (279)
T ss_pred eCCHHHHHHHHcCCCEEEEEC
Confidence 555777888899999887755
No 423
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.39 E-value=1.6e+02 Score=23.48 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
....||-...-+.|++.|++++++|+.+.......+ +..|+
T Consensus 70 N~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l-~~~g~ 110 (277)
T PRK00994 70 NPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM-EEQGL 110 (277)
T ss_pred CCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH-HhcCC
Confidence 344577777888888999999999999988877777 55554
No 424
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.32 E-value=1.5e+02 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHcCCC---CCcEEEEecCHh--hHHHHHHcC
Q 024956 149 PSPDIFLEAAKRLNME---PSSSLVIEDSVI--GVVAGKAAG 185 (260)
Q Consensus 149 p~~~~~~~~l~~l~~~---~~~~~~vGD~~~--Dv~~a~~~G 185 (260)
-+|+.+.+.+..+++. .++++||+|++. -..|||++.
T Consensus 380 ~KP~lIle~l~~~~~~d~~~~~vvFvdDGLArGAavMaRCMN 421 (448)
T PF09887_consen 380 KKPELILEYLEELGIYDDPFDNVVFVDDGLARGAAVMARCMN 421 (448)
T ss_pred CChHHHHHHHHhcccccCcccceEEeccchhhhHHHHHHHHH
Confidence 3458888888888753 468999999993 666777754
No 425
>COG4065 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.19 E-value=1.4e+02 Score=24.80 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHHcCCCC--CcEEEEecCHh--hHHHHHHcC
Q 024956 148 KPSPDIFLEAAKRLNMEP--SSSLVIEDSVI--GVVAGKAAG 185 (260)
Q Consensus 148 kp~~~~~~~~l~~l~~~~--~~~~~vGD~~~--Dv~~a~~~G 185 (260)
-.+|+.+...++.+++-+ ++++||+|++. -..||+.+.
T Consensus 409 G~KP~LIl~~l~~~d~~~k~e~~vFV~DgLA~GAavMARCMN 450 (480)
T COG4065 409 GNKPELILECLKNMDLWDKIEDVVFVDDGLARGAAVMARCMN 450 (480)
T ss_pred CCChHHHHHHHhcccccccccceEEecchhhhhHHHHHHHHh
Confidence 345688888888877543 68999999993 566777654
No 426
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.96 E-value=1.2e+02 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=25.4
Q ss_pred cCCCCccHHHHHHHHHHCCCcEEEEeCCC
Q 024956 89 KVKALPGANRLIKHLSCHGVPMALASNSH 117 (260)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~ 117 (260)
+..+.|++.++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 45567899999999999999999999985
No 427
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=21.78 E-value=2e+02 Score=20.58 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 024956 101 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180 (260)
Q Consensus 101 ~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~ 180 (260)
..|++.|+.-+.+..-..-.-+ ....+.+....++.++.... ..+ ..|+.+++.+++++++++++. +..+.+
T Consensus 7 ~lLqeMGItqW~Lr~P~~L~Ge----~~i~Lp~~~rLliVa~~~p~-~~~-~L~~dILrsl~L~~~q~~~lt--~eql~~ 78 (133)
T TIGR00664 7 LLLQELGISQWELRRPEALQGE----IAIAIAAHIRLIMVANDENA-LSD-PLLADVLLALNLKKDNCLCLN--PDKIAH 78 (133)
T ss_pred HHHHHcCCceEEecCcccccCC----cccCCchhceEEEEeCCCCc-ccC-hHHHHHHHHcCCCHHHeeeeC--HHHHhh
Confidence 4567778888877654322111 11223444455565554442 222 369999999999999988873 344444
Q ss_pred H
Q 024956 181 G 181 (260)
Q Consensus 181 a 181 (260)
.
T Consensus 79 L 79 (133)
T TIGR00664 79 L 79 (133)
T ss_pred C
Confidence 4
No 428
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=21.72 E-value=1.6e+02 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE 143 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~ 143 (260)
++.++=+.|++.|+++.++.+.....+...+ +.++. +.++...+
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~-~~~~~----~~V~~~~~ 97 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELA-KEYGA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHH-HHHTE----SEEEEE--
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHH-HhcCc----CeeEeccc
Confidence 4567778888899999999998777776666 65664 55555443
No 429
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.71 E-value=1.8e+02 Score=24.48 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=45.1
Q ss_pred hhcCCccccceEEeccccCCCCCC-------hHHHHHHHHHcCCCCC--cEEEEecCHh----hHHHHHHcCCeEEEEcC
Q 024956 127 YQHGWNESFSVIVGSDEVRTGKPS-------PDIFLEAAKRLNMEPS--SSLVIEDSVI----GVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 127 ~~~gl~~~f~~i~~~~~~~~~kp~-------~~~~~~~l~~l~~~~~--~~~~vGD~~~----Dv~~a~~~G~~~i~~~~ 193 (260)
..-.+..+||.++.....+..... .++.+.++++-+++++ +.+++||..+ --..++.+|++.+.+..
T Consensus 28 ~~Gpl~~~FD~~~~d~~~g~~swEkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~g 107 (334)
T PRK12404 28 AKGPLAEDFDLLHEDLWLGQDSYEKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFG 107 (334)
T ss_pred cCCCChhhCCeeecccccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCCCccceee
Confidence 344577889998876655533322 2456778888899887 5789999652 33667888987755543
No 430
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=21.68 E-value=4e+02 Score=20.81 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhH-HHHHHhhcCCccccceEEeccccCCCCC--------ChHHHHHHHHHcCCCC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATI-ESKISYQHGWNESFSVIVGSDEVRTGKP--------SPDIFLEAAKRLNMEP 165 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~-~~~l~~~~gl~~~f~~i~~~~~~~~~kp--------~~~~~~~~l~~l~~~~ 165 (260)
.+.+++.+--.++-++.++-.+....+ ++..-+.-|+.. ...|+....+-...+ .-..-+..+.++++.+
T Consensus 26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~-~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~ 104 (243)
T COG4821 26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAP-IKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRP 104 (243)
T ss_pred HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccc-cccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCC
Confidence 455677777777778888876666654 333313344443 233333321111111 1123455778899999
Q ss_pred CcEEEE----ecCHhhHHH---HHHcCCeEEEEcC
Q 024956 166 SSSLVI----EDSVIGVVA---GKAAGMEVVAVPS 193 (260)
Q Consensus 166 ~~~~~v----GD~~~Dv~~---a~~~G~~~i~~~~ 193 (260)
.++++| |-++.-+++ +++-|...|.+.+
T Consensus 105 ~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 105 NDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred CCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 998886 444445555 5678888888877
No 431
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.61 E-value=2e+02 Score=20.21 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl 131 (260)
.+.++.+++.+.|+.++.+|......++..+ +..++
T Consensus 50 ~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~-~~~~~ 85 (149)
T cd03018 50 ALRDSLELFEAAGAEVLGISVDSPFSLRAWA-EENGL 85 (149)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCHHHHHHHH-HhcCC
Confidence 3345556666667777777766655555555 44443
No 432
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.57 E-value=1.2e+02 Score=26.35 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHH----HHHHcCCeEEEEcC
Q 024956 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVV----AGKAAGMEVVAVPS 193 (260)
Q Consensus 150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~----~a~~~G~~~i~~~~ 193 (260)
..+-+.++.+++|--.+.+.+|||++.|+- ++-..|.....+-.
T Consensus 207 E~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEG 254 (505)
T PF10113_consen 207 EMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEG 254 (505)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeC
Confidence 345566777888888889999999998764 45566777666654
No 433
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=21.52 E-value=2.5e+02 Score=23.40 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRAT 120 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~ 120 (260)
-.|-=.++++++++.|.++.+++.++-.-
T Consensus 162 dRpRH~~lI~eiR~~GarI~Li~DGDVa~ 190 (321)
T PRK12388 162 DKPRLSAAIEEATQLGVKVFALPDGDVAA 190 (321)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHH
Confidence 34666789999999999999999988754
No 434
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.47 E-value=1.3e+02 Score=22.97 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=25.5
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 91 KALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
--.+.+.+.++.++++|.+++.+|+.....+
T Consensus 122 G~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 122 GNSGNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 3457899999999999999999999865543
No 435
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.43 E-value=4.4e+02 Score=21.29 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH--
Q 024956 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-- 175 (260)
Q Consensus 98 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-- 175 (260)
.+-++|++.|..+.++++.........+ +..|+ +.+...+... ...+.+.+...+++.+.+ +.|-|++
T Consensus 22 ~LA~~l~~~g~~v~f~~~~~~~~~~~~i-~~~g~----~v~~~~~~~~-~~~d~~~~~~~l~~~~~d----~vV~D~y~~ 91 (279)
T TIGR03590 22 TLARALHAQGAEVAFACKPLPGDLIDLL-LSAGF----PVYELPDESS-RYDDALELINLLEEEKFD----ILIVDHYGL 91 (279)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHH-HHcCC----eEEEecCCCc-hhhhHHHHHHHHHhcCCC----EEEEcCCCC
Confidence 3445666677777777777665544455 44443 2211111111 111223344445444322 4444544
Q ss_pred --hhHHHHHHcCCeEEEEcC
Q 024956 176 --IGVVAGKAAGMEVVAVPS 193 (260)
Q Consensus 176 --~Dv~~a~~~G~~~i~~~~ 193 (260)
......+..+...+.+..
T Consensus 92 ~~~~~~~~k~~~~~l~~iDD 111 (279)
T TIGR03590 92 DADWEKLIKEFGRKILVIDD 111 (279)
T ss_pred CHHHHHHHHHhCCeEEEEec
Confidence 234555555666666655
No 436
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=21.33 E-value=53 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.8
Q ss_pred cEEEEecCCccccC
Q 024956 10 SCVILDLDGTLLNT 23 (260)
Q Consensus 10 k~vifD~DGTL~d~ 23 (260)
..|-||+|||+.--
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 47899999999854
No 437
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=21.27 E-value=3.8e+02 Score=26.41 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCChHhH-HHHHH--hhcCCccc--c-ceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956 93 LPGANRLIKHLSCHGVPMALASNSHRATI-ESKIS--YQHGWNES--F-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~-~~~l~--~~~gl~~~--f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~ 166 (260)
-.+..+.++.+..+|++++.+....-... ..+.. .+-.++.- | ..++-. .+.|+.....-.-+.+.++ .
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVme---NkLK~~T~~VI~eL~~AnI--R 723 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVME---NKLKEETKRVIDELNRANI--R 723 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEee---cccccccHHHHHHHHhhcc--e
Confidence 45788999999999999988765533322 00110 11111111 1 222222 3455555444444444444 4
Q ss_pred cEEEEecCH-hhHHHHHHcCC
Q 024956 167 SSLVIEDSV-IGVVAGKAAGM 186 (260)
Q Consensus 167 ~~~~vGD~~-~Dv~~a~~~G~ 186 (260)
.++.=||+. .-+.-||.+|+
T Consensus 724 tVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 724 TVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEEEcCCchheeeehhhcccc
Confidence 567789999 89999999997
No 438
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=21.25 E-value=4.5e+02 Score=24.36 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=50.8
Q ss_pred CccHHHHHHHHHHCCCc-EEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956 93 LPGANRLIKHLSCHGVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (260)
Q Consensus 93 ~~~~~~~l~~l~~~g~~-i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v 171 (260)
.|-..-+|..|.+.|+. ++++++.....+...+ +...+...++..+..-..+..+.-+++++.+=++-=+.-+=++.-
T Consensus 55 VpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i-~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVs 133 (673)
T KOG1461|consen 55 VPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYI-EKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVS 133 (673)
T ss_pred chHHHHHHHHHHhcCceEEEEEecccHHHHHHHH-hhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEe
Confidence 35666788889988865 5666777777777777 554554444422221111234444566666555543455567778
Q ss_pred ecCHhhHH
Q 024956 172 EDSVIGVV 179 (260)
Q Consensus 172 GD~~~Dv~ 179 (260)
||...++.
T Consensus 134 gd~vsN~p 141 (673)
T KOG1461|consen 134 GDTVSNMP 141 (673)
T ss_pred CCeeecCc
Confidence 88875443
No 439
>PF08117 Toxin_30: Ptu family; InterPro: IPR012325 Assassin bugs (Arthropoda:Insecta:Hemiptera:Reduviidae), sometimes known as conenoses or kissing bugs, are one of the largest and morphologically diverse families of true bugs feeding on crickets, caterpillars and other insects. Some assassin bug species are bloodsucking parasites of mammals, even of human. They can be commonly found throughout most of the world and their size varies from a few millimetres to as much as 3 or 4 centimetres. The toxic saliva of the predatory assassin bugs contains a complex mixture of small and large peptides for diverse uses such as immobilizing and pre-digesting their prey, and defence against competitors and predators. Assassin bug toxins are small peptides with disulphide connectivity that target ion-channels. They are relatively homologous to the calcium channel blockers omega-conotoxins from marine cone snails and belong to the four-loop cysteine scaffold structural class [], []. One of these small proteins, Ptu1, blocks reversibly the N-type calcium channels, but at the same time is less specific for the L- or P/Q-type calcium channels []. Ptu1 is 34 amino acid residues long and is cross-linked by three disulphide bridges. Ptu1 contains a beta-sheet region made of two antiparallel beta-strands and consists of a compact disulphide-bonded core from which four loops emerge as well as N- and C-termini []. Some assassin bug toxins are listed below: Agriosphodrus dohrni (Assassin bug) toxin Ado1. Isyndus obscurus (Assassin bug) toxin Iob1. Peirates turpis (Assassin bug) toxin Ptu1. ; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1I26_A 1LMR_A.
Probab=21.14 E-value=43 Score=17.14 Aligned_cols=10 Identities=60% Similarity=0.737 Sum_probs=5.0
Q ss_pred cCCccccCCC
Q 024956 248 GRGSKVLGIP 257 (260)
Q Consensus 248 ~~~~~~~~~~ 257 (260)
-|||+|+|-+
T Consensus 7 ~~Gs~C~G~~ 16 (35)
T PF08117_consen 7 PRGSKCLGEN 16 (35)
T ss_dssp -TTS--TTTT
T ss_pred CCCCcccCCC
Confidence 4788888854
No 440
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.89 E-value=1.2e+02 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCCh
Q 024956 90 VKALPGANRLIKHLSCHGVPMALASNSHR 118 (260)
Q Consensus 90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~ 118 (260)
.+.+|...+++++|+++|+++++..+...
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 34678999999999999999999877654
No 441
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=20.77 E-value=2.9e+02 Score=18.82 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 140 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~ 140 (260)
.+.++++.|.+.++.++++|....+.+...+ +...-...+..++.
T Consensus 34 ~~~~~~~~l~~~~~~iIiite~~a~~i~~~i-~~~~~~~~~P~iv~ 78 (104)
T COG1436 34 ELRAALRVLAEDDVGIILITEDLAEKIREEI-RRIIRSSVLPAIVE 78 (104)
T ss_pred HHHHHHHhhccCCceEEEEeHHHHhhhHHHH-HHHhhccCccEEEE
Confidence 4788999999999999999998888887777 54433333444443
No 442
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.75 E-value=1.3e+02 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 95 GANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
.+.+++.+|++. +.+++||.+.....
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQAa 212 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQAA 212 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHHH
Confidence 478999999966 99999999877654
No 443
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=20.52 E-value=2.3e+02 Score=23.62 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHHCCCcEEEEeCCChHhH
Q 024956 92 ALPGANRLIKHLSCHGVPMALASNSHRATI 121 (260)
Q Consensus 92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 121 (260)
-.|-=.++++++++.|.++.+++.++-.-.
T Consensus 163 dRpRH~~lI~eir~~Gari~Li~DGDV~~a 192 (322)
T PRK12415 163 ERERHQDIIDRVRAKGARVKLFGDGDVGAS 192 (322)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHH
Confidence 346667899999999999999999987543
No 444
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.06 E-value=1.6e+02 Score=17.55 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCC
Q 024956 95 GANRLIKHLSCHGVPMALASNSH 117 (260)
Q Consensus 95 ~~~~~l~~l~~~g~~i~i~s~~~ 117 (260)
...+++++++++|+..+.+|+-.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 46789999999999999999876
No 445
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.05 E-value=1.1e+02 Score=19.62 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956 94 PGANRLIKHLSCHGVPMALASNSHRA 119 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~~i~i~s~~~~~ 119 (260)
....++++.|++.|+++...|++...
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~~ 78 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDELA 78 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHHH
Confidence 44788999999999999888776543
No 446
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=20.04 E-value=3.6e+02 Score=19.65 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.2
Q ss_pred CCCcEEEEeCCChHhHHHHH
Q 024956 106 HGVPMALASNSHRATIESKI 125 (260)
Q Consensus 106 ~g~~i~i~s~~~~~~~~~~l 125 (260)
.+.++.++++.+.+.+...+
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~ 67 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELL 67 (158)
T ss_pred CCceEEEEeCCCHHHHHHHH
Confidence 35667777777777655555
No 447
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=20.03 E-value=3.3e+02 Score=19.29 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCChH--------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956 96 ANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (260)
Q Consensus 96 ~~~~l~~l~~~g~~i~i~s~~~~~--------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~ 167 (260)
+...++.+++...+..++|++... .+...+ ...|+.. +.++.-+.......+......++++.+. ..
T Consensus 23 ~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l-~~~gv~~--~~I~~e~~s~~T~ena~~~~~~~~~~~~--~~ 97 (150)
T cd06259 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYL-IELGVPA--EAILLEDRSTNTYENARFSAELLRERGI--RS 97 (150)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHH-HHcCCCH--HHeeecCCCCCHHHHHHHHHHHHHhcCC--Ce
Confidence 344555555555677777776432 223333 3334321 1222211111111222334445555554 56
Q ss_pred EEEEecCHh---hHHHHHHcCC
Q 024956 168 SLVIEDSVI---GVVAGKAAGM 186 (260)
Q Consensus 168 ~~~vGD~~~---Dv~~a~~~G~ 186 (260)
++.|.|... -...++..+.
T Consensus 98 i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 98 VLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred EEEECCHHHHHHHHHHHHHcCC
Confidence 777777662 4455666665
No 448
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.02 E-value=1.5e+02 Score=17.75 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHHCCC
Q 024956 94 PGANRLIKHLSCHGV 108 (260)
Q Consensus 94 ~~~~~~l~~l~~~g~ 108 (260)
..+.++|+.|+++|+
T Consensus 52 ~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 52 EDVEEFLEQLREKGL 66 (68)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCcC
Confidence 455677777777663
Done!