Query 024958
Match_columns 260
No_of_seqs 202 out of 2508
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1399 Flavin-containing mono 99.9 1.2E-25 2.5E-30 208.0 -3.7 197 28-234 4-215 (448)
2 PF00743 FMO-like: Flavin-bind 99.9 6.4E-27 1.4E-31 221.8 -15.8 182 30-233 1-211 (531)
3 COG2072 TrkA Predicted flavopr 99.9 3.1E-24 6.7E-29 199.9 -1.0 193 28-236 6-206 (443)
4 PLN02172 flavin-containing mon 99.8 1.7E-22 3.7E-27 189.0 -6.5 60 172-234 174-233 (461)
5 PF13738 Pyr_redox_3: Pyridine 99.6 8.2E-18 1.8E-22 140.3 -8.7 175 34-233 1-195 (203)
6 PF13450 NAD_binding_8: NAD(P) 99.6 7.4E-15 1.6E-19 101.9 6.3 65 35-100 1-67 (68)
7 COG3349 Uncharacterized conser 99.5 4.9E-14 1.1E-18 130.4 7.6 71 31-101 1-71 (485)
8 KOG0029 Amine oxidase [Seconda 99.4 3.2E-13 7E-18 127.3 8.6 73 26-98 11-83 (501)
9 PRK11883 protoporphyrinogen ox 99.4 7.6E-13 1.6E-17 123.3 6.9 70 31-101 1-72 (451)
10 PLN02487 zeta-carotene desatur 99.4 2.9E-12 6.2E-17 122.8 10.1 87 15-101 60-146 (569)
11 TIGR00562 proto_IX_ox protopor 99.4 1.4E-12 3.1E-17 122.0 7.9 71 30-101 2-76 (462)
12 PRK07208 hypothetical protein; 99.4 2.1E-12 4.5E-17 121.7 8.8 72 29-101 3-74 (479)
13 PLN02268 probable polyamine ox 99.3 3E-12 6.4E-17 119.2 7.7 70 31-101 1-72 (435)
14 PRK07233 hypothetical protein; 99.3 3.3E-12 7.1E-17 118.2 6.5 69 32-101 1-69 (434)
15 PRK12416 protoporphyrinogen ox 99.3 3.6E-12 7.9E-17 119.6 6.6 70 31-101 2-77 (463)
16 PLN02576 protoporphyrinogen ox 99.3 6.5E-12 1.4E-16 118.8 8.3 73 27-100 9-82 (496)
17 TIGR02731 phytoene_desat phyto 99.3 7.2E-12 1.6E-16 117.3 8.3 70 32-101 1-70 (453)
18 COG1233 Phytoene dehydrogenase 99.3 6.6E-12 1.4E-16 118.8 7.9 70 29-99 2-72 (487)
19 TIGR02732 zeta_caro_desat caro 99.3 1E-11 2.2E-16 117.1 8.6 70 32-101 1-70 (474)
20 COG2907 Predicted NAD/FAD-bind 99.3 1.2E-11 2.6E-16 109.2 7.3 75 26-101 4-82 (447)
21 PLN02612 phytoene desaturase 99.2 4.7E-11 1E-15 114.9 9.8 73 29-101 92-164 (567)
22 KOG0685 Flavin-containing amin 99.2 4.2E-11 9E-16 109.6 8.4 70 30-100 21-92 (498)
23 COG1232 HemY Protoporphyrinoge 99.2 5E-11 1.1E-15 110.5 7.6 70 31-101 1-72 (444)
24 TIGR02734 crtI_fam phytoene de 99.2 6.4E-11 1.4E-15 112.3 7.8 56 33-89 1-56 (502)
25 TIGR02733 desat_CrtD C-3',4' d 99.1 8.6E-11 1.9E-15 111.2 6.9 58 31-89 2-59 (492)
26 PLN02568 polyamine oxidase 99.1 1.7E-10 3.8E-15 110.2 8.7 70 30-100 5-80 (539)
27 COG3380 Predicted NAD/FAD-depe 99.1 2.8E-10 6.2E-15 97.6 7.7 69 31-100 2-70 (331)
28 TIGR01292 TRX_reduct thioredox 99.1 1.6E-11 3.6E-16 107.9 0.2 166 31-233 1-169 (300)
29 PRK12779 putative bifunctional 99.1 3.7E-11 8.1E-16 121.2 1.7 42 29-70 305-346 (944)
30 PRK10262 thioredoxin reductase 99.1 1.3E-11 2.8E-16 110.5 -2.0 170 29-234 5-175 (321)
31 COG0562 Glf UDP-galactopyranos 99.1 4.8E-10 1E-14 98.2 7.7 71 31-101 2-74 (374)
32 TIGR02730 carot_isom carotene 99.0 4.1E-10 9E-15 106.7 6.9 58 31-89 1-58 (493)
33 PLN02676 polyamine oxidase 99.0 7.2E-10 1.6E-14 104.9 8.5 70 30-100 26-100 (487)
34 TIGR00031 UDP-GALP_mutase UDP- 99.0 1.2E-09 2.6E-14 99.9 8.6 70 31-101 2-72 (377)
35 PRK13977 myosin-cross-reactive 99.0 1.2E-09 2.6E-14 103.8 8.2 71 30-101 22-97 (576)
36 PLN02529 lysine-specific histo 99.0 1.5E-09 3.2E-14 106.6 8.9 66 28-93 158-226 (738)
37 PRK15317 alkyl hydroperoxide r 99.0 8.3E-11 1.8E-15 112.1 -0.1 170 29-233 210-379 (517)
38 PRK12831 putative oxidoreducta 99.0 2.9E-10 6.4E-15 107.0 3.5 42 29-70 139-180 (464)
39 PLN02852 ferredoxin-NADP+ redu 99.0 5E-10 1.1E-14 105.6 4.9 43 29-71 25-69 (491)
40 COG1231 Monoamine oxidase [Ami 98.9 2.3E-09 4.9E-14 98.2 7.7 72 28-100 5-76 (450)
41 PRK14694 putative mercuric red 98.9 3.3E-10 7.3E-15 106.6 2.0 41 29-70 5-45 (468)
42 PRK08010 pyridine nucleotide-d 98.9 3.1E-10 6.8E-15 106.0 1.7 42 29-70 2-44 (441)
43 PRK07251 pyridine nucleotide-d 98.9 5.1E-10 1.1E-14 104.5 2.8 42 29-70 2-44 (438)
44 PRK05249 soluble pyridine nucl 98.9 1.4E-10 3.1E-15 108.8 -1.2 43 29-71 4-46 (461)
45 PLN02328 lysine-specific histo 98.9 6.5E-09 1.4E-13 102.8 9.1 66 28-93 236-304 (808)
46 COG0492 TrxB Thioredoxin reduc 98.9 4.2E-10 9.2E-15 100.1 -0.0 169 29-233 2-171 (305)
47 PLN03000 amine oxidase 98.8 7.1E-09 1.5E-13 102.8 8.3 68 29-96 183-253 (881)
48 PRK06292 dihydrolipoamide dehy 98.8 9.2E-10 2E-14 103.3 1.8 41 29-70 2-42 (460)
49 PRK12778 putative bifunctional 98.8 1.6E-09 3.5E-14 107.7 3.5 42 29-70 430-471 (752)
50 KOG1276 Protoporphyrinogen oxi 98.8 7.3E-09 1.6E-13 93.9 7.2 74 28-101 9-87 (491)
51 PRK14727 putative mercuric red 98.8 1.6E-09 3.4E-14 102.4 2.9 43 29-71 15-57 (479)
52 PRK06567 putative bifunctional 98.8 4.5E-09 9.7E-14 104.9 5.8 40 29-68 382-421 (1028)
53 TIGR01421 gluta_reduc_1 glutat 98.8 1.9E-09 4.1E-14 101.1 3.1 40 30-70 2-41 (450)
54 PRK06370 mercuric reductase; V 98.8 2.2E-09 4.7E-14 101.0 3.4 41 29-70 4-44 (463)
55 TIGR03143 AhpF_homolog putativ 98.8 4.2E-10 9E-15 108.2 -1.6 40 30-70 4-43 (555)
56 TIGR02053 MerA mercuric reduct 98.8 7E-10 1.5E-14 104.3 -0.4 39 31-70 1-39 (463)
57 TIGR01350 lipoamide_DH dihydro 98.8 1.5E-09 3.3E-14 101.8 1.4 39 31-70 2-40 (461)
58 PRK13748 putative mercuric red 98.8 1.7E-09 3.6E-14 104.0 0.8 41 29-70 97-137 (561)
59 PTZ00058 glutathione reductase 98.8 3.4E-09 7.4E-14 101.7 2.7 41 29-70 47-87 (561)
60 PF01593 Amino_oxidase: Flavin 98.8 2.1E-08 4.5E-13 91.4 7.7 62 40-101 1-63 (450)
61 COG1635 THI4 Ribulose 1,5-bisp 98.7 9.4E-09 2E-13 85.9 4.2 41 30-70 30-70 (262)
62 TIGR03140 AhpF alkyl hydropero 98.7 1.9E-09 4E-14 102.8 -0.9 41 28-70 210-250 (515)
63 PLN02976 amine oxidase 98.7 3.4E-08 7.4E-13 101.4 6.9 61 30-90 693-753 (1713)
64 PF01946 Thi4: Thi4 family; PD 98.7 2.1E-08 4.6E-13 84.0 4.2 41 30-70 17-57 (230)
65 PLN02507 glutathione reductase 98.6 2.4E-09 5.2E-14 101.7 -2.0 42 29-70 24-74 (499)
66 TIGR01438 TGR thioredoxin and 98.5 3.9E-08 8.4E-13 93.1 3.2 40 31-70 3-50 (484)
67 PLN02546 glutathione reductase 98.5 1.3E-08 2.8E-13 97.7 -0.9 41 30-70 79-128 (558)
68 PTZ00188 adrenodoxin reductase 98.5 1.8E-07 4E-12 87.7 6.7 55 13-72 27-82 (506)
69 COG0644 FixC Dehydrogenases (f 98.5 1.6E-07 3.6E-12 86.6 5.0 43 29-71 2-44 (396)
70 TIGR03315 Se_ygfK putative sel 98.5 2.5E-07 5.4E-12 93.6 6.6 43 29-71 536-578 (1012)
71 TIGR00292 thiazole biosynthesi 98.5 2.1E-07 4.6E-12 80.9 5.3 39 30-68 21-59 (254)
72 PRK04176 ribulose-1,5-biphosph 98.4 2.5E-07 5.4E-12 80.6 5.2 40 30-69 25-64 (257)
73 PRK07364 2-octaprenyl-6-methox 98.4 4.8E-07 1E-11 83.6 6.2 38 28-65 16-53 (415)
74 PLN00093 geranylgeranyl diphos 98.4 6E-07 1.3E-11 84.3 6.7 38 26-63 35-72 (450)
75 TIGR01316 gltA glutamate synth 98.4 7E-07 1.5E-11 83.8 6.5 42 29-70 132-173 (449)
76 PRK06115 dihydrolipoamide dehy 98.4 4.6E-07 1E-11 85.4 5.3 41 30-70 3-43 (466)
77 PRK09853 putative selenate red 98.4 5.1E-07 1.1E-11 91.2 5.8 43 29-71 538-580 (1019)
78 PRK12769 putative oxidoreducta 98.3 7E-07 1.5E-11 87.6 6.5 43 29-71 326-368 (654)
79 TIGR01377 soxA_mon sarcosine o 98.3 6.7E-07 1.4E-11 81.5 5.6 36 31-66 1-36 (380)
80 PF01494 FAD_binding_3: FAD bi 98.3 5.7E-07 1.2E-11 80.3 4.9 35 31-65 2-36 (356)
81 PLN02463 lycopene beta cyclase 98.3 1.1E-06 2.5E-11 82.3 7.0 60 5-64 3-62 (447)
82 PRK10157 putative oxidoreducta 98.3 7.1E-07 1.5E-11 83.3 5.6 37 30-66 5-41 (428)
83 TIGR02032 GG-red-SF geranylger 98.3 6.8E-07 1.5E-11 78.1 5.2 38 31-68 1-38 (295)
84 PF01266 DAO: FAD dependent ox 98.3 6.5E-07 1.4E-11 80.0 5.1 35 32-67 1-35 (358)
85 PF03486 HI0933_like: HI0933-l 98.3 6E-07 1.3E-11 83.2 4.8 36 31-66 1-36 (409)
86 PRK07236 hypothetical protein; 98.3 7.9E-07 1.7E-11 81.6 5.4 37 28-64 4-40 (386)
87 PRK08163 salicylate hydroxylas 98.3 8.7E-07 1.9E-11 81.3 5.3 37 30-66 4-40 (396)
88 PRK10015 oxidoreductase; Provi 98.3 9E-07 2E-11 82.6 5.4 37 30-66 5-41 (429)
89 PRK06416 dihydrolipoamide dehy 98.3 8.2E-07 1.8E-11 83.5 5.1 41 30-71 4-44 (462)
90 KOG1800 Ferredoxin/adrenodoxin 98.3 1.7E-06 3.6E-11 77.8 6.7 44 29-72 19-64 (468)
91 PRK06753 hypothetical protein; 98.3 8.5E-07 1.8E-11 80.8 5.0 36 31-66 1-36 (373)
92 PRK12814 putative NADPH-depend 98.3 1.2E-06 2.7E-11 85.9 6.3 42 29-70 192-233 (652)
93 COG0493 GltD NADPH-dependent g 98.3 1.2E-06 2.5E-11 82.2 5.9 42 30-71 123-164 (457)
94 PRK12775 putative trifunctiona 98.3 1.1E-06 2.3E-11 89.9 6.1 41 30-70 430-470 (1006)
95 PRK12809 putative oxidoreducta 98.3 1.3E-06 2.7E-11 85.6 6.4 43 29-71 309-351 (639)
96 PRK12810 gltD glutamate syntha 98.3 1.5E-06 3.3E-11 82.0 6.5 42 29-70 142-183 (471)
97 PRK07121 hypothetical protein; 98.3 2E-06 4.4E-11 81.6 7.2 42 29-70 19-60 (492)
98 TIGR01988 Ubi-OHases Ubiquinon 98.3 9.6E-07 2.1E-11 80.4 4.7 34 32-65 1-34 (385)
99 PTZ00363 rab-GDP dissociation 98.3 1E-06 2.2E-11 82.5 4.9 44 29-72 3-46 (443)
100 PRK12409 D-amino acid dehydrog 98.3 1.1E-06 2.4E-11 81.1 5.2 36 31-66 2-37 (410)
101 COG1148 HdrA Heterodisulfide r 98.3 7.9E-07 1.7E-11 82.1 4.0 44 28-71 122-165 (622)
102 TIGR01424 gluta_reduc_2 glutat 98.2 1.1E-06 2.5E-11 82.2 5.1 40 30-70 2-41 (446)
103 PRK07045 putative monooxygenas 98.2 1.1E-06 2.5E-11 80.5 5.0 37 29-65 4-40 (388)
104 PRK11749 dihydropyrimidine deh 98.2 1.7E-06 3.6E-11 81.4 6.1 42 29-70 139-180 (457)
105 PRK09126 hypothetical protein; 98.2 1.3E-06 2.8E-11 80.1 5.2 36 29-64 2-37 (392)
106 PRK06116 glutathione reductase 98.2 1.1E-06 2.5E-11 82.2 4.8 40 30-70 4-43 (450)
107 TIGR01373 soxB sarcosine oxida 98.2 6.1E-06 1.3E-10 76.2 9.6 50 18-67 18-69 (407)
108 PRK06467 dihydrolipoamide dehy 98.2 1.6E-06 3.4E-11 81.9 5.5 41 30-70 4-44 (471)
109 PRK08849 2-octaprenyl-3-methyl 98.2 1.6E-06 3.4E-11 79.6 5.3 34 30-63 3-36 (384)
110 PF12831 FAD_oxidored: FAD dep 98.2 1.5E-06 3.3E-11 81.0 5.2 39 32-70 1-39 (428)
111 COG0665 DadA Glycine/D-amino a 98.2 1.7E-06 3.6E-11 79.0 5.3 40 29-68 3-42 (387)
112 TIGR01318 gltD_gamma_fam gluta 98.2 2.5E-06 5.5E-11 80.5 6.5 42 29-70 140-181 (467)
113 PRK05976 dihydrolipoamide dehy 98.2 1.6E-06 3.5E-11 81.8 5.1 40 30-70 4-43 (472)
114 PRK08013 oxidoreductase; Provi 98.2 1.7E-06 3.7E-11 79.8 5.2 36 29-64 2-37 (400)
115 PRK11259 solA N-methyltryptoph 98.2 2E-06 4.3E-11 78.3 5.3 38 29-66 2-39 (376)
116 PRK07538 hypothetical protein; 98.2 1.8E-06 3.9E-11 80.0 5.0 35 31-65 1-35 (413)
117 PRK06847 hypothetical protein; 98.2 2E-06 4.2E-11 78.4 5.1 35 30-64 4-38 (375)
118 PRK08773 2-octaprenyl-3-methyl 98.2 2E-06 4.2E-11 79.1 5.1 36 29-64 5-40 (392)
119 KOG0405 Pyridine nucleotide-di 98.2 5.3E-07 1.1E-11 80.2 1.0 43 29-71 19-61 (478)
120 TIGR02028 ChlP geranylgeranyl 98.2 2.2E-06 4.8E-11 79.2 5.3 35 31-65 1-35 (398)
121 PRK05732 2-octaprenyl-6-methox 98.2 1.9E-06 4.1E-11 78.9 4.8 35 28-62 1-38 (395)
122 TIGR01790 carotene-cycl lycope 98.2 2.1E-06 4.6E-11 78.6 5.0 37 32-68 1-37 (388)
123 PF00890 FAD_binding_2: FAD bi 98.2 2.3E-06 4.9E-11 79.2 5.2 38 32-69 1-38 (417)
124 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 2.2E-06 4.8E-11 78.9 5.0 35 30-64 2-36 (390)
125 PRK07818 dihydrolipoamide dehy 98.2 2.6E-06 5.6E-11 80.3 5.5 40 30-70 4-43 (466)
126 PF13434 K_oxygenase: L-lysine 98.2 7.3E-08 1.6E-12 87.3 -4.9 66 163-229 149-214 (341)
127 PRK06184 hypothetical protein; 98.2 2.6E-06 5.6E-11 81.0 5.4 37 29-65 2-38 (502)
128 TIGR01984 UbiH 2-polyprenyl-6- 98.1 2.1E-06 4.5E-11 78.4 4.5 34 32-65 1-35 (382)
129 PRK11728 hydroxyglutarate oxid 98.1 2.4E-06 5.2E-11 78.6 5.0 38 31-68 3-42 (393)
130 PRK07588 hypothetical protein; 98.1 2.4E-06 5.3E-11 78.4 5.0 35 31-65 1-35 (391)
131 PRK07608 ubiquinone biosynthes 98.1 2.5E-06 5.4E-11 78.0 5.0 36 30-65 5-40 (388)
132 COG2081 Predicted flavoprotein 98.1 2.7E-06 5.9E-11 77.1 5.0 39 29-67 2-40 (408)
133 PRK06475 salicylate hydroxylas 98.1 2.8E-06 6E-11 78.4 5.2 35 31-65 3-37 (400)
134 PLN02697 lycopene epsilon cycl 98.1 5E-06 1.1E-10 79.4 7.0 40 26-65 104-143 (529)
135 PRK12771 putative glutamate sy 98.1 4.2E-06 9.2E-11 80.7 6.6 43 28-70 135-177 (564)
136 PRK06481 fumarate reductase fl 98.1 4E-06 8.7E-11 79.9 6.3 41 29-69 60-100 (506)
137 PRK01747 mnmC bifunctional tRN 98.1 4.2E-06 9E-11 82.3 6.6 37 30-66 260-296 (662)
138 TIGR03219 salicylate_mono sali 98.1 2.7E-06 5.9E-11 78.7 5.0 36 31-66 1-37 (414)
139 PRK07494 2-octaprenyl-6-methox 98.1 2.9E-06 6.3E-11 77.7 5.1 36 30-65 7-42 (388)
140 TIGR03364 HpnW_proposed FAD de 98.1 3.1E-06 6.7E-11 76.9 5.3 35 31-65 1-35 (365)
141 PRK05714 2-octaprenyl-3-methyl 98.1 2.5E-06 5.4E-11 78.7 4.6 33 31-63 3-35 (405)
142 TIGR03329 Phn_aa_oxid putative 98.1 4.7E-06 1E-10 78.4 6.5 36 29-64 23-60 (460)
143 TIGR02023 BchP-ChlP geranylger 98.1 2.8E-06 6.1E-11 78.1 4.8 32 31-62 1-32 (388)
144 TIGR03467 HpnE squalene-associ 98.1 4.3E-06 9.2E-11 76.9 5.8 57 44-101 1-59 (419)
145 TIGR01372 soxA sarcosine oxida 98.1 3.9E-06 8.6E-11 85.9 5.9 42 30-71 163-204 (985)
146 TIGR01813 flavo_cyto_c flavocy 98.1 3.4E-06 7.5E-11 78.7 5.1 38 32-69 1-39 (439)
147 PRK05868 hypothetical protein; 98.1 3.9E-06 8.4E-11 76.8 5.2 35 31-65 2-36 (372)
148 PRK00711 D-amino acid dehydrog 98.1 3.7E-06 8.1E-11 77.6 5.1 37 31-67 1-37 (416)
149 PRK08243 4-hydroxybenzoate 3-m 98.1 4E-06 8.6E-11 77.2 4.9 35 30-64 2-36 (392)
150 COG0654 UbiH 2-polyprenyl-6-me 98.1 4E-06 8.7E-11 77.1 4.9 33 30-62 2-34 (387)
151 PLN02661 Putative thiazole syn 98.1 4E-06 8.7E-11 75.8 4.8 39 30-68 92-131 (357)
152 PRK12266 glpD glycerol-3-phosp 98.1 4.7E-06 1E-10 79.5 5.5 40 30-69 6-45 (508)
153 TIGR01317 GOGAT_sm_gam glutama 98.1 7.4E-06 1.6E-10 77.7 6.4 42 29-70 142-183 (485)
154 PRK04965 NADH:flavorubredoxin 98.1 5.6E-07 1.2E-11 82.4 -1.2 34 31-64 3-38 (377)
155 PRK08850 2-octaprenyl-6-methox 98.1 4.7E-06 1E-10 76.9 4.9 33 30-62 4-36 (405)
156 PRK08244 hypothetical protein; 98.0 5.3E-06 1.2E-10 78.6 5.3 36 30-65 2-37 (493)
157 PRK13369 glycerol-3-phosphate 98.0 5.9E-06 1.3E-10 78.6 5.5 39 30-68 6-44 (502)
158 PRK06185 hypothetical protein; 98.0 5.6E-06 1.2E-10 76.3 5.2 36 29-64 5-40 (407)
159 PRK08274 tricarballylate dehyd 98.0 6.2E-06 1.3E-10 77.6 5.4 39 30-68 4-44 (466)
160 PRK06617 2-octaprenyl-6-methox 98.0 5.1E-06 1.1E-10 76.0 4.6 33 31-63 2-34 (374)
161 PRK14989 nitrite reductase sub 98.0 2.8E-07 6.1E-12 92.5 -3.9 38 29-66 2-43 (847)
162 PRK06126 hypothetical protein; 98.0 6.4E-06 1.4E-10 79.1 5.5 35 30-64 7-41 (545)
163 PRK12770 putative glutamate sy 98.0 8.9E-06 1.9E-10 73.9 6.1 42 29-70 17-58 (352)
164 PRK08132 FAD-dependent oxidore 98.0 9.6E-06 2.1E-10 77.9 6.5 37 29-65 22-58 (547)
165 PRK08020 ubiF 2-octaprenyl-3-m 98.0 5.6E-06 1.2E-10 75.9 4.7 34 30-63 5-38 (391)
166 PLN02927 antheraxanthin epoxid 98.0 6.3E-06 1.4E-10 80.5 5.1 36 28-63 79-114 (668)
167 COG3634 AhpF Alkyl hydroperoxi 98.0 9.3E-07 2E-11 78.7 -0.6 44 203-246 352-397 (520)
168 PRK06834 hypothetical protein; 98.0 7.3E-06 1.6E-10 77.8 5.4 36 29-64 2-37 (488)
169 PRK06327 dihydrolipoamide dehy 98.0 7.1E-06 1.5E-10 77.5 5.3 41 30-70 4-50 (475)
170 PLN02487 zeta-carotene desatur 98.0 1.4E-05 3.1E-10 76.9 7.3 106 135-240 437-565 (569)
171 PRK06183 mhpA 3-(3-hydroxyphen 98.0 1.1E-05 2.3E-10 77.5 6.3 39 28-66 8-46 (538)
172 PRK11101 glpA sn-glycerol-3-ph 98.0 8E-06 1.7E-10 78.6 5.5 39 30-68 6-44 (546)
173 PRK12837 3-ketosteroid-delta-1 98.0 8.9E-06 1.9E-10 77.6 5.7 39 30-69 7-45 (513)
174 PLN02985 squalene monooxygenas 98.0 9.2E-06 2E-10 77.6 5.5 36 28-63 41-76 (514)
175 PRK07333 2-octaprenyl-6-methox 98.0 7.2E-06 1.6E-10 75.4 4.6 34 31-64 2-37 (403)
176 KOG0399 Glutamate synthase [Am 98.0 8.5E-06 1.8E-10 81.6 5.2 43 29-71 1784-1826(2142)
177 PRK12842 putative succinate de 98.0 8.9E-06 1.9E-10 78.7 5.3 41 30-70 9-49 (574)
178 PRK07190 hypothetical protein; 98.0 9.6E-06 2.1E-10 76.9 5.4 36 30-65 5-40 (487)
179 PTZ00052 thioredoxin reductase 98.0 8.5E-06 1.8E-10 77.5 5.0 41 30-70 5-53 (499)
180 TIGR01789 lycopene_cycl lycope 98.0 8.8E-06 1.9E-10 74.6 4.9 37 32-68 1-39 (370)
181 TIGR01989 COQ6 Ubiquinone bios 97.9 9.6E-06 2.1E-10 75.8 4.6 33 31-63 1-37 (437)
182 PRK13984 putative oxidoreducta 97.9 1.6E-05 3.5E-10 77.3 6.2 43 28-70 281-323 (604)
183 TIGR00275 flavoprotein, HI0933 97.9 6.6E-06 1.4E-10 76.1 3.3 37 34-70 1-37 (400)
184 PRK12834 putative FAD-binding 97.9 1.2E-05 2.7E-10 77.3 5.3 40 30-69 4-45 (549)
185 PRK11445 putative oxidoreducta 97.9 1.2E-05 2.5E-10 73.1 4.8 33 31-64 2-34 (351)
186 PRK06912 acoL dihydrolipoamide 97.9 1.3E-05 2.8E-10 75.4 5.1 39 31-70 1-39 (458)
187 KOG2614 Kynurenine 3-monooxyge 97.9 1.3E-05 2.8E-10 73.0 4.8 36 30-65 2-37 (420)
188 PF07992 Pyr_redox_2: Pyridine 97.9 1.6E-05 3.6E-10 65.6 4.9 36 32-67 1-36 (201)
189 PRK12835 3-ketosteroid-delta-1 97.9 2E-05 4.3E-10 76.4 6.2 40 30-69 11-50 (584)
190 TIGR01320 mal_quin_oxido malat 97.9 1.3E-05 2.8E-10 76.0 4.7 36 31-66 1-38 (483)
191 PRK05335 tRNA (uracil-5-)-meth 97.9 1.6E-05 3.5E-10 73.6 5.2 35 31-65 3-37 (436)
192 PRK08641 sdhA succinate dehydr 97.9 1.6E-05 3.5E-10 77.1 5.4 40 29-68 2-41 (589)
193 KOG4254 Phytoene desaturase [C 97.9 9E-06 1.9E-10 74.7 3.4 60 28-87 12-71 (561)
194 PLN02464 glycerol-3-phosphate 97.9 1.7E-05 3.6E-10 77.6 5.5 40 30-69 71-110 (627)
195 PTZ00367 squalene epoxidase; P 97.9 7.6E-06 1.6E-10 78.9 3.0 34 30-63 33-66 (567)
196 PRK12839 hypothetical protein; 97.9 2E-05 4.3E-10 76.3 5.8 42 29-70 7-48 (572)
197 PTZ00153 lipoamide dehydrogena 97.9 2.9E-05 6.3E-10 76.1 6.9 42 30-71 116-158 (659)
198 TIGR02374 nitri_red_nirB nitri 97.9 1.2E-06 2.5E-11 87.7 -2.9 67 161-233 96-168 (785)
199 PRK12844 3-ketosteroid-delta-1 97.9 1.8E-05 3.8E-10 76.4 5.3 40 30-69 6-45 (557)
200 PRK12845 3-ketosteroid-delta-1 97.9 2.3E-05 5E-10 75.7 6.0 41 29-70 15-55 (564)
201 COG1249 Lpd Pyruvate/2-oxoglut 97.8 2.1E-05 4.5E-10 73.8 5.3 43 29-71 3-45 (454)
202 PRK12843 putative FAD-binding 97.8 3.4E-05 7.3E-10 74.8 6.8 42 29-70 15-56 (578)
203 PRK07804 L-aspartate oxidase; 97.8 3.1E-05 6.7E-10 74.5 6.4 40 29-68 15-54 (541)
204 TIGR01423 trypano_reduc trypan 97.8 2.1E-05 4.6E-10 74.6 5.2 41 30-70 3-52 (486)
205 PTZ00306 NADH-dependent fumara 97.8 3.1E-05 6.8E-10 80.6 6.6 43 28-70 407-449 (1167)
206 PRK08294 phenol 2-monooxygenas 97.8 3.6E-05 7.7E-10 75.4 6.6 36 30-65 32-68 (634)
207 PRK07843 3-ketosteroid-delta-1 97.8 2.4E-05 5.2E-10 75.5 5.4 41 30-70 7-47 (557)
208 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.3E-05 4.9E-10 72.9 4.9 35 32-66 2-36 (433)
209 PRK05257 malate:quinone oxidor 97.8 2.2E-05 4.7E-10 74.6 4.8 39 29-67 4-44 (494)
210 PRK07573 sdhA succinate dehydr 97.8 3.5E-05 7.5E-10 75.5 6.3 37 30-66 35-71 (640)
211 PF05834 Lycopene_cycl: Lycope 97.8 2.1E-05 4.5E-10 72.1 4.4 34 32-65 1-36 (374)
212 TIGR01812 sdhA_frdA_Gneg succi 97.8 2.4E-05 5.2E-10 75.6 5.0 37 32-68 1-37 (566)
213 PRK06134 putative FAD-binding 97.8 3.8E-05 8.2E-10 74.5 6.4 42 29-70 11-52 (581)
214 PF00070 Pyr_redox: Pyridine n 97.8 4.4E-05 9.5E-10 54.1 5.1 35 32-66 1-35 (80)
215 PRK05192 tRNA uridine 5-carbox 97.8 2.9E-05 6.2E-10 75.0 5.2 39 29-67 3-42 (618)
216 PRK07803 sdhA succinate dehydr 97.8 2.9E-05 6.2E-10 75.9 5.1 39 30-68 8-46 (626)
217 PTZ00139 Succinate dehydrogena 97.8 3.2E-05 7E-10 75.4 5.4 39 30-68 29-67 (617)
218 PRK08255 salicylyl-CoA 5-hydro 97.8 2.7E-05 5.8E-10 77.8 4.9 34 31-64 1-36 (765)
219 PRK07845 flavoprotein disulfid 97.8 3.2E-05 7E-10 72.9 5.1 39 31-70 2-40 (466)
220 PLN00128 Succinate dehydrogena 97.8 5.1E-05 1.1E-09 74.3 6.4 39 30-68 50-88 (635)
221 PTZ00383 malate:quinone oxidor 97.7 4.2E-05 9E-10 72.7 5.5 38 29-66 44-83 (497)
222 PRK06452 sdhA succinate dehydr 97.7 3.8E-05 8.2E-10 74.2 5.2 39 30-68 5-43 (566)
223 PRK07057 sdhA succinate dehydr 97.7 3.9E-05 8.5E-10 74.5 5.3 40 30-69 12-51 (591)
224 PRK08401 L-aspartate oxidase; 97.7 3.9E-05 8.4E-10 72.4 5.1 34 31-64 2-35 (466)
225 KOG2415 Electron transfer flav 97.7 3.3E-05 7.1E-10 70.5 4.3 42 30-71 76-123 (621)
226 TIGR02462 pyranose_ox pyranose 97.7 4E-05 8.7E-10 73.4 5.1 39 31-69 1-39 (544)
227 PRK05945 sdhA succinate dehydr 97.7 4.2E-05 9.1E-10 74.1 5.0 40 29-68 2-43 (575)
228 PRK08958 sdhA succinate dehydr 97.7 4.8E-05 1E-09 73.8 5.1 39 30-68 7-45 (588)
229 COG0579 Predicted dehydrogenas 97.7 5E-05 1.1E-09 70.5 4.9 42 29-70 2-45 (429)
230 PRK07395 L-aspartate oxidase; 97.7 5.5E-05 1.2E-09 72.9 5.4 40 28-68 7-46 (553)
231 PRK09078 sdhA succinate dehydr 97.7 5.3E-05 1.1E-09 73.7 5.1 39 30-68 12-50 (598)
232 PLN02815 L-aspartate oxidase 97.7 7.3E-05 1.6E-09 72.6 6.0 39 29-68 28-66 (594)
233 PRK06175 L-aspartate oxidase; 97.7 5.1E-05 1.1E-09 71.0 4.7 38 30-68 4-41 (433)
234 PRK06069 sdhA succinate dehydr 97.7 5.4E-05 1.2E-09 73.3 5.0 40 30-69 5-47 (577)
235 TIGR00551 nadB L-aspartate oxi 97.7 5.9E-05 1.3E-09 71.6 5.1 37 31-68 3-39 (488)
236 KOG2820 FAD-dependent oxidored 97.6 4.2E-05 9E-10 68.0 3.6 41 30-70 7-47 (399)
237 PRK13339 malate:quinone oxidor 97.6 7.4E-05 1.6E-09 70.9 5.3 39 28-66 4-44 (497)
238 PF00732 GMC_oxred_N: GMC oxid 97.6 5.1E-05 1.1E-09 66.9 3.9 36 31-66 1-37 (296)
239 PRK08626 fumarate reductase fl 97.6 6.7E-05 1.4E-09 73.7 5.0 38 30-67 5-42 (657)
240 PRK06996 hypothetical protein; 97.6 7E-05 1.5E-09 69.1 4.8 34 30-63 11-48 (398)
241 PRK09897 hypothetical protein; 97.6 7.9E-05 1.7E-09 71.3 5.3 38 31-68 2-42 (534)
242 PRK06854 adenylylsulfate reduc 97.6 6.9E-05 1.5E-09 73.1 4.9 37 30-66 11-49 (608)
243 PF06100 Strep_67kDa_ant: Stre 97.6 0.00013 2.9E-09 68.2 6.4 71 30-101 2-77 (500)
244 PRK08071 L-aspartate oxidase; 97.6 8.2E-05 1.8E-09 71.0 5.0 39 30-69 3-41 (510)
245 PRK06263 sdhA succinate dehydr 97.6 8.9E-05 1.9E-09 71.3 5.2 39 29-68 6-45 (543)
246 KOG1335 Dihydrolipoamide dehyd 97.6 6.6E-05 1.4E-09 67.9 3.9 42 29-70 38-79 (506)
247 PF01134 GIDA: Glucose inhibit 97.5 0.0001 2.2E-09 67.7 4.8 37 32-68 1-38 (392)
248 PRK08275 putative oxidoreducta 97.5 9.9E-05 2.2E-09 71.2 4.9 36 30-65 9-46 (554)
249 COG0578 GlpA Glycerol-3-phosph 97.5 0.00012 2.6E-09 69.5 5.2 42 29-70 11-52 (532)
250 TIGR01811 sdhA_Bsu succinate d 97.5 9E-05 2E-09 72.2 4.4 34 33-66 1-34 (603)
251 PRK09231 fumarate reductase fl 97.5 0.00011 2.3E-09 71.4 4.8 40 30-69 4-45 (582)
252 PRK09077 L-aspartate oxidase; 97.5 0.00015 3.3E-09 69.6 5.6 39 29-68 7-45 (536)
253 TIGR01176 fum_red_Fp fumarate 97.5 0.00012 2.7E-09 70.9 4.8 40 30-69 3-44 (580)
254 KOG1298 Squalene monooxygenase 97.5 0.00013 2.9E-09 65.9 4.5 35 28-62 43-77 (509)
255 PRK09754 phenylpropionate diox 97.4 0.00019 4E-09 66.3 5.3 37 29-65 2-40 (396)
256 TIGR02061 aprA adenosine phosp 97.4 0.00018 3.8E-09 70.1 4.9 34 32-65 1-38 (614)
257 PRK09564 coenzyme A disulfide 97.4 0.00017 3.8E-09 67.3 4.7 36 31-66 1-38 (444)
258 PRK05329 anaerobic glycerol-3- 97.4 0.0002 4.4E-09 66.7 4.9 34 30-63 2-35 (422)
259 PRK13512 coenzyme A disulfide 97.4 0.00023 4.9E-09 66.7 5.0 36 31-66 2-39 (438)
260 PRK08205 sdhA succinate dehydr 97.4 0.00022 4.7E-09 69.3 5.0 37 30-67 5-41 (583)
261 COG1053 SdhA Succinate dehydro 97.4 0.00023 5E-09 68.6 5.1 40 29-68 5-44 (562)
262 COG3573 Predicted oxidoreducta 97.3 0.00029 6.4E-09 62.8 4.9 41 29-69 4-46 (552)
263 PF13454 NAD_binding_9: FAD-NA 97.3 0.00026 5.7E-09 56.8 4.0 37 34-70 1-43 (156)
264 PRK02106 choline dehydrogenase 97.3 0.00032 7E-09 67.7 5.1 34 30-63 5-39 (560)
265 PTZ00318 NADH dehydrogenase-li 97.2 0.00042 9.2E-09 64.6 5.2 39 26-64 6-44 (424)
266 COG3075 GlpB Anaerobic glycero 97.2 0.00041 8.8E-09 61.7 4.5 33 30-62 2-34 (421)
267 KOG2852 Possible oxidoreductas 97.2 0.00016 3.5E-09 63.2 2.0 41 28-68 8-54 (380)
268 PRK07846 mycothione reductase; 97.2 0.00048 1E-08 64.8 4.9 67 162-234 129-195 (451)
269 TIGR03452 mycothione_red mycot 97.2 0.00052 1.1E-08 64.5 5.0 38 30-70 2-39 (452)
270 TIGR02485 CobZ_N-term precorri 97.1 0.00036 7.9E-09 65.1 3.6 35 35-69 1-37 (432)
271 TIGR00136 gidA glucose-inhibit 97.1 0.00068 1.5E-08 65.6 5.4 37 31-67 1-37 (617)
272 COG0446 HcaD Uncharacterized N 97.1 0.0006 1.3E-08 62.2 4.9 40 30-69 136-175 (415)
273 PRK07512 L-aspartate oxidase; 97.1 0.00049 1.1E-08 65.8 4.3 38 29-68 8-46 (513)
274 PRK13800 putative oxidoreducta 97.1 0.0006 1.3E-08 69.4 5.1 36 29-64 12-47 (897)
275 KOG2404 Fumarate reductase, fl 97.1 0.00065 1.4E-08 60.4 4.2 39 32-70 11-49 (477)
276 TIGR01810 betA choline dehydro 97.0 0.00054 1.2E-08 65.7 3.9 33 32-64 1-34 (532)
277 COG3486 IucD Lysine/ornithine 97.0 0.00017 3.6E-09 65.8 0.2 40 29-70 4-44 (436)
278 TIGR03378 glycerol3P_GlpB glyc 97.0 0.00084 1.8E-08 62.3 4.8 33 31-63 1-33 (419)
279 COG4529 Uncharacterized protei 96.9 0.0019 4.1E-08 60.2 6.2 43 30-72 1-46 (474)
280 PF04820 Trp_halogenase: Trypt 96.9 0.0009 2E-08 63.0 4.1 33 32-64 1-36 (454)
281 KOG2844 Dimethylglycine dehydr 96.8 0.0083 1.8E-07 58.0 9.6 72 1-72 1-83 (856)
282 COG1206 Gid NAD(FAD)-utilizing 96.7 0.0015 3.3E-08 58.2 3.9 37 30-66 3-39 (439)
283 KOG2665 Predicted FAD-dependen 96.7 0.0016 3.4E-08 57.8 3.9 42 26-67 44-87 (453)
284 KOG2960 Protein involved in th 96.7 0.00039 8.4E-09 58.4 -0.1 39 31-69 77-117 (328)
285 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0022 4.7E-08 51.5 4.3 32 32-63 1-32 (157)
286 COG2303 BetA Choline dehydroge 96.7 0.0017 3.8E-08 62.5 4.1 36 28-63 5-40 (542)
287 PRK01438 murD UDP-N-acetylmura 96.7 0.0034 7.3E-08 59.4 6.0 36 29-64 15-50 (480)
288 PLN02785 Protein HOTHEAD 96.6 0.0036 7.8E-08 60.9 5.7 35 29-64 54-88 (587)
289 KOG2853 Possible oxidoreductas 96.6 0.0018 4E-08 58.0 3.3 35 30-64 86-124 (509)
290 COG1252 Ndh NADH dehydrogenase 96.6 0.0033 7.1E-08 58.1 5.0 36 29-64 2-39 (405)
291 TIGR03169 Nterm_to_SelD pyridi 96.6 0.0023 5.1E-08 58.1 4.1 33 32-64 1-36 (364)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0025 5.4E-08 52.7 3.2 34 31-64 1-34 (185)
293 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0038 8.2E-08 51.4 4.2 33 32-64 1-33 (180)
294 PRK02705 murD UDP-N-acetylmura 96.4 0.0044 9.5E-08 58.2 4.7 34 32-65 2-35 (459)
295 PRK09754 phenylpropionate diox 96.3 0.0057 1.2E-07 56.4 5.1 39 30-68 144-182 (396)
296 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.0054 1.2E-07 54.7 4.6 34 31-64 3-36 (308)
297 PRK07066 3-hydroxybutyryl-CoA 96.2 0.0081 1.8E-07 54.0 5.3 35 30-64 7-41 (321)
298 PRK07530 3-hydroxybutyryl-CoA 96.1 0.0082 1.8E-07 53.1 4.8 35 29-63 3-37 (292)
299 PRK07251 pyridine nucleotide-d 96.1 0.0093 2E-07 55.7 5.3 38 30-67 157-194 (438)
300 PRK07819 3-hydroxybutyryl-CoA 96.1 0.009 1.9E-07 52.8 4.7 35 31-65 6-40 (286)
301 TIGR02732 zeta_caro_desat caro 96.0 0.011 2.3E-07 56.1 5.4 52 173-224 422-473 (474)
302 COG0029 NadB Aspartate oxidase 96.0 0.0061 1.3E-07 57.1 3.3 33 32-65 9-41 (518)
303 COG0569 TrkA K+ transport syst 95.9 0.01 2.2E-07 50.7 4.5 34 31-64 1-34 (225)
304 PRK08293 3-hydroxybutyryl-CoA 95.9 0.011 2.4E-07 52.1 4.9 34 30-63 3-36 (287)
305 PRK05976 dihydrolipoamide dehy 95.9 0.011 2.3E-07 55.9 5.0 36 30-65 180-215 (472)
306 PRK06912 acoL dihydrolipoamide 95.9 0.022 4.8E-07 53.6 6.9 37 30-66 170-206 (458)
307 PRK04965 NADH:flavorubredoxin 95.9 0.012 2.6E-07 53.8 4.9 37 30-66 141-177 (377)
308 COG1249 Lpd Pyruvate/2-oxoglut 95.9 0.019 4.1E-07 54.1 6.3 37 30-66 173-209 (454)
309 PRK14106 murD UDP-N-acetylmura 95.8 0.013 2.9E-07 54.8 5.2 35 29-63 4-38 (450)
310 PF02558 ApbA: Ketopantoate re 95.8 0.012 2.6E-07 46.5 4.1 31 33-63 1-31 (151)
311 PRK09260 3-hydroxybutyryl-CoA 95.8 0.012 2.5E-07 52.0 4.4 34 31-64 2-35 (288)
312 TIGR01350 lipoamide_DH dihydro 95.8 0.014 2.9E-07 54.9 5.0 37 30-66 170-206 (461)
313 PRK06249 2-dehydropantoate 2-r 95.7 0.017 3.8E-07 51.5 5.2 35 29-63 4-38 (313)
314 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.015 3.3E-07 51.3 4.8 34 31-64 4-37 (291)
315 PF01262 AlaDh_PNT_C: Alanine 95.7 0.018 3.9E-07 46.7 4.8 35 29-63 19-53 (168)
316 TIGR02053 MerA mercuric reduct 95.7 0.016 3.5E-07 54.5 5.0 37 30-66 166-202 (463)
317 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.015 3.2E-07 54.3 4.6 35 30-64 3-37 (415)
318 PRK06467 dihydrolipoamide dehy 95.6 0.018 3.9E-07 54.5 5.2 37 30-66 174-210 (471)
319 PRK06416 dihydrolipoamide dehy 95.6 0.018 3.8E-07 54.2 5.0 37 30-66 172-208 (462)
320 PRK06370 mercuric reductase; V 95.6 0.02 4.3E-07 54.0 5.3 38 30-67 171-208 (463)
321 PRK06115 dihydrolipoamide dehy 95.6 0.02 4.3E-07 54.1 5.2 37 30-66 174-210 (466)
322 TIGR01421 gluta_reduc_1 glutat 95.5 0.021 4.5E-07 53.7 5.2 37 30-66 166-202 (450)
323 PRK06292 dihydrolipoamide dehy 95.5 0.021 4.5E-07 53.6 5.2 38 30-67 169-206 (460)
324 PRK05249 soluble pyridine nucl 95.5 0.021 4.5E-07 53.7 5.1 37 30-66 175-211 (461)
325 PRK07846 mycothione reductase; 95.5 0.021 4.6E-07 53.7 5.1 37 30-66 166-202 (451)
326 COG1004 Ugd Predicted UDP-gluc 95.5 0.018 3.8E-07 52.7 4.2 32 31-62 1-32 (414)
327 PRK06522 2-dehydropantoate 2-r 95.4 0.021 4.6E-07 50.4 4.6 32 31-62 1-32 (304)
328 PF00996 GDI: GDP dissociation 95.4 0.025 5.5E-07 52.9 5.2 44 30-73 4-47 (438)
329 PF13738 Pyr_redox_3: Pyridine 95.4 0.02 4.3E-07 47.2 4.2 35 29-63 166-200 (203)
330 TIGR03385 CoA_CoA_reduc CoA-di 95.4 0.025 5.4E-07 52.6 5.2 36 30-65 137-172 (427)
331 PRK07818 dihydrolipoamide dehy 95.4 0.024 5.2E-07 53.4 5.1 37 30-66 172-208 (466)
332 COG4716 Myosin-crossreactive a 95.4 0.006 1.3E-07 55.4 0.9 41 30-70 22-66 (587)
333 PRK05808 3-hydroxybutyryl-CoA 95.4 0.024 5.2E-07 49.8 4.8 34 31-64 4-37 (282)
334 PRK13512 coenzyme A disulfide 95.3 0.024 5.1E-07 53.1 4.9 38 30-67 148-185 (438)
335 PRK06327 dihydrolipoamide dehy 95.3 0.026 5.7E-07 53.4 5.1 36 30-65 183-218 (475)
336 PRK12921 2-dehydropantoate 2-r 95.3 0.025 5.5E-07 50.0 4.7 31 31-61 1-31 (305)
337 KOG0404 Thioredoxin reductase 95.3 0.031 6.7E-07 47.5 4.8 43 31-73 9-55 (322)
338 PLN02545 3-hydroxybutyryl-CoA 95.2 0.028 6.1E-07 49.7 4.8 33 31-63 5-37 (295)
339 PRK08229 2-dehydropantoate 2-r 95.2 0.025 5.5E-07 50.9 4.5 33 31-63 3-35 (341)
340 PRK05708 2-dehydropantoate 2-r 95.2 0.029 6.4E-07 50.0 4.8 33 30-62 2-34 (305)
341 TIGR03452 mycothione_red mycot 95.2 0.031 6.7E-07 52.6 5.1 37 30-66 169-205 (452)
342 PF01488 Shikimate_DH: Shikima 95.1 0.049 1.1E-06 42.5 5.2 35 29-63 11-46 (135)
343 KOG3923 D-aspartate oxidase [A 95.1 0.02 4.3E-07 50.5 3.2 32 30-61 3-41 (342)
344 TIGR01470 cysG_Nterm siroheme 95.0 0.048 1E-06 45.9 5.2 35 29-63 8-42 (205)
345 KOG4716 Thioredoxin reductase 95.0 0.027 5.8E-07 50.7 3.7 33 29-61 18-50 (503)
346 PRK14619 NAD(P)H-dependent gly 94.9 0.049 1.1E-06 48.6 5.2 34 30-63 4-37 (308)
347 PRK09564 coenzyme A disulfide 94.8 0.043 9.4E-07 51.2 5.1 37 30-66 149-185 (444)
348 PF03446 NAD_binding_2: NAD bi 94.8 0.047 1E-06 44.0 4.6 34 31-64 2-35 (163)
349 TIGR03026 NDP-sugDHase nucleot 94.8 0.032 6.9E-07 51.9 4.1 34 31-64 1-34 (411)
350 PRK06130 3-hydroxybutyryl-CoA 94.8 0.039 8.5E-07 49.1 4.5 33 31-63 5-37 (311)
351 TIGR02374 nitri_red_nirB nitri 94.8 0.038 8.2E-07 55.7 4.9 36 30-65 140-175 (785)
352 TIGR03140 AhpF alkyl hydropero 94.8 0.041 8.9E-07 52.7 4.9 36 30-65 352-387 (515)
353 PRK07845 flavoprotein disulfid 94.8 0.048 1E-06 51.5 5.3 39 30-68 177-215 (466)
354 KOG0042 Glycerol-3-phosphate d 94.7 0.032 6.9E-07 53.0 3.7 42 29-70 66-107 (680)
355 PRK14618 NAD(P)H-dependent gly 94.7 0.046 1E-06 49.1 4.7 33 31-63 5-37 (328)
356 TIGR01424 gluta_reduc_2 glutat 94.7 0.051 1.1E-06 51.0 5.1 36 30-65 166-201 (446)
357 PRK07531 bifunctional 3-hydrox 94.7 0.046 1E-06 52.1 4.8 33 31-63 5-37 (495)
358 PTZ00058 glutathione reductase 94.6 0.048 1E-06 52.8 5.0 37 30-66 237-273 (561)
359 TIGR01763 MalateDH_bact malate 94.6 0.056 1.2E-06 48.3 5.0 34 31-64 2-36 (305)
360 COG0445 GidA Flavin-dependent 94.6 0.041 8.8E-07 52.4 4.2 32 30-61 4-35 (621)
361 PRK06116 glutathione reductase 94.6 0.056 1.2E-06 50.7 5.1 36 30-65 167-202 (450)
362 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.5 0.048 1E-06 52.1 4.6 35 30-64 5-39 (503)
363 PRK06719 precorrin-2 dehydroge 94.5 0.069 1.5E-06 42.9 4.9 33 28-60 11-43 (157)
364 PRK00094 gpsA NAD(P)H-dependen 94.5 0.049 1.1E-06 48.5 4.5 33 31-63 2-34 (325)
365 PLN02507 glutathione reductase 94.5 0.056 1.2E-06 51.6 5.0 36 30-65 203-238 (499)
366 PRK10262 thioredoxin reductase 94.5 0.056 1.2E-06 48.2 4.7 35 30-64 146-180 (321)
367 PRK08268 3-hydroxy-acyl-CoA de 94.5 0.062 1.3E-06 51.4 5.2 35 30-64 7-41 (507)
368 PRK14620 NAD(P)H-dependent gly 94.5 0.057 1.2E-06 48.4 4.7 33 31-63 1-33 (326)
369 PTZ00153 lipoamide dehydrogena 94.5 0.057 1.2E-06 53.3 5.0 38 30-67 312-349 (659)
370 PRK14989 nitrite reductase sub 94.4 0.052 1.1E-06 55.1 4.9 36 30-65 145-180 (847)
371 PRK01710 murD UDP-N-acetylmura 94.4 0.056 1.2E-06 50.9 4.8 34 30-63 14-47 (458)
372 PRK04690 murD UDP-N-acetylmura 94.4 0.05 1.1E-06 51.5 4.5 33 30-62 8-40 (468)
373 PRK08010 pyridine nucleotide-d 94.4 0.064 1.4E-06 50.1 5.2 37 30-66 158-194 (441)
374 PRK06718 precorrin-2 dehydroge 94.4 0.072 1.6E-06 44.7 5.0 34 29-62 9-42 (202)
375 PRK15317 alkyl hydroperoxide r 94.4 0.06 1.3E-06 51.5 5.0 37 29-65 350-386 (517)
376 TIGR00518 alaDH alanine dehydr 94.3 0.066 1.4E-06 49.1 4.9 35 29-63 166-200 (370)
377 PLN02256 arogenate dehydrogena 94.3 0.066 1.4E-06 47.8 4.8 60 4-63 9-69 (304)
378 PRK09424 pntA NAD(P) transhydr 94.3 0.086 1.9E-06 50.4 5.7 36 28-63 163-198 (509)
379 TIGR01316 gltA glutamate synth 94.3 0.069 1.5E-06 50.2 5.0 35 30-64 272-306 (449)
380 PRK04148 hypothetical protein; 94.2 0.042 9.2E-07 43.0 2.9 33 31-64 18-50 (134)
381 TIGR03143 AhpF_homolog putativ 94.2 0.066 1.4E-06 51.8 4.9 35 30-64 143-177 (555)
382 KOG3855 Monooxygenase involved 94.2 0.094 2E-06 48.3 5.5 33 30-62 36-72 (481)
383 PRK03369 murD UDP-N-acetylmura 94.2 0.067 1.4E-06 50.9 4.8 33 30-62 12-44 (488)
384 COG1251 NirB NAD(P)H-nitrite r 94.2 0.0083 1.8E-07 58.7 -1.3 71 160-230 100-170 (793)
385 cd05292 LDH_2 A subgroup of L- 94.2 0.073 1.6E-06 47.6 4.7 34 31-64 1-36 (308)
386 PF13241 NAD_binding_7: Putati 94.2 0.044 9.4E-07 40.7 2.8 34 29-62 6-39 (103)
387 COG0771 MurD UDP-N-acetylmuram 94.1 0.056 1.2E-06 50.7 4.0 36 30-65 7-42 (448)
388 PRK11730 fadB multifunctional 94.1 0.084 1.8E-06 52.6 5.4 36 29-64 312-347 (715)
389 cd01080 NAD_bind_m-THF_DH_Cycl 94.0 0.097 2.1E-06 42.6 4.8 35 28-62 42-77 (168)
390 PRK13748 putative mercuric red 94.0 0.081 1.7E-06 51.0 5.1 34 30-63 270-303 (561)
391 PRK14694 putative mercuric red 94.0 0.089 1.9E-06 49.7 5.2 33 30-62 178-210 (468)
392 TIGR01292 TRX_reduct thioredox 94.0 0.089 1.9E-06 45.8 4.9 35 30-64 141-175 (300)
393 PRK04308 murD UDP-N-acetylmura 94.0 0.085 1.8E-06 49.4 5.0 35 30-64 5-39 (445)
394 PF06039 Mqo: Malate:quinone o 94.0 0.084 1.8E-06 49.5 4.7 39 30-68 3-43 (488)
395 PRK12831 putative oxidoreducta 93.9 0.086 1.9E-06 49.8 5.0 35 29-63 280-314 (464)
396 PRK15057 UDP-glucose 6-dehydro 93.9 0.07 1.5E-06 49.3 4.2 33 31-64 1-33 (388)
397 PRK07417 arogenate dehydrogena 93.9 0.07 1.5E-06 46.9 4.0 33 31-63 1-33 (279)
398 KOG1238 Glucose dehydrogenase/ 93.9 0.093 2E-06 50.8 5.0 39 27-65 54-93 (623)
399 PLN02546 glutathione reductase 93.8 0.088 1.9E-06 51.0 4.9 37 30-66 252-288 (558)
400 PRK12770 putative glutamate sy 93.8 0.094 2E-06 47.5 4.8 34 30-63 172-206 (352)
401 TIGR02437 FadB fatty oxidation 93.7 0.11 2.3E-06 51.9 5.4 36 29-64 312-347 (714)
402 KOG4405 GDP dissociation inhib 93.7 0.072 1.6E-06 49.0 3.8 44 30-73 8-51 (547)
403 PRK14727 putative mercuric red 93.7 0.1 2.3E-06 49.4 5.1 33 30-62 188-220 (479)
404 PF00056 Ldh_1_N: lactate/mala 93.7 0.13 2.9E-06 40.4 4.9 33 31-63 1-36 (141)
405 PRK02472 murD UDP-N-acetylmura 93.7 0.091 2E-06 49.1 4.6 34 30-63 5-38 (447)
406 cd00401 AdoHcyase S-adenosyl-L 93.6 0.11 2.4E-06 48.4 4.9 36 29-64 201-236 (413)
407 PRK08306 dipicolinate synthase 93.6 0.12 2.6E-06 46.0 5.0 35 29-63 151-185 (296)
408 TIGR01915 npdG NADPH-dependent 93.6 0.11 2.4E-06 43.9 4.6 33 31-63 1-34 (219)
409 COG1250 FadB 3-hydroxyacyl-CoA 93.6 0.097 2.1E-06 46.7 4.3 35 30-64 3-37 (307)
410 TIGR01438 TGR thioredoxin and 93.5 0.11 2.3E-06 49.5 4.7 33 30-62 180-212 (484)
411 cd01075 NAD_bind_Leu_Phe_Val_D 93.5 0.16 3.4E-06 42.5 5.3 34 29-62 27-60 (200)
412 PLN02602 lactate dehydrogenase 93.5 0.14 3.1E-06 46.6 5.3 33 31-63 38-72 (350)
413 TIGR01423 trypano_reduc trypan 93.4 0.12 2.7E-06 49.1 5.1 37 30-66 187-226 (486)
414 PLN02353 probable UDP-glucose 93.4 0.1 2.2E-06 49.5 4.4 32 31-62 2-35 (473)
415 PRK12549 shikimate 5-dehydroge 93.4 0.13 2.9E-06 45.4 4.9 34 30-63 127-161 (284)
416 PRK01368 murD UDP-N-acetylmura 93.4 0.11 2.4E-06 48.9 4.7 32 30-62 6-37 (454)
417 PTZ00052 thioredoxin reductase 93.4 0.12 2.6E-06 49.3 4.9 33 30-62 182-214 (499)
418 TIGR01505 tartro_sem_red 2-hyd 93.4 0.097 2.1E-06 46.2 4.0 32 32-63 1-32 (291)
419 cd05293 LDH_1 A subgroup of L- 93.3 0.15 3.2E-06 45.7 5.2 35 29-63 2-38 (312)
420 cd05291 HicDH_like L-2-hydroxy 93.3 0.13 2.8E-06 45.9 4.8 34 31-64 1-36 (306)
421 PRK06223 malate dehydrogenase; 93.2 0.14 3E-06 45.6 4.8 33 31-63 3-36 (307)
422 TIGR02440 FadJ fatty oxidation 93.2 0.15 3.2E-06 50.8 5.4 36 29-64 303-339 (699)
423 COG1748 LYS9 Saccharopine dehy 93.1 0.14 3E-06 47.2 4.7 32 31-62 2-34 (389)
424 TIGR02441 fa_ox_alpha_mit fatt 93.1 0.13 2.8E-06 51.5 4.8 36 29-64 334-369 (737)
425 PRK00141 murD UDP-N-acetylmura 93.1 0.15 3.2E-06 48.4 5.0 33 30-62 15-47 (473)
426 PTZ00082 L-lactate dehydrogena 93.1 0.17 3.7E-06 45.6 5.1 34 31-64 7-41 (321)
427 COG1893 ApbA Ketopantoate redu 93.0 0.12 2.6E-06 46.2 4.1 34 31-64 1-34 (307)
428 COG2084 MmsB 3-hydroxyisobutyr 93.0 0.14 3E-06 45.3 4.3 35 31-65 1-35 (286)
429 PRK00421 murC UDP-N-acetylmura 92.9 0.11 2.4E-06 48.9 3.9 34 31-64 8-42 (461)
430 PRK11154 fadJ multifunctional 92.9 0.16 3.5E-06 50.6 5.2 36 29-64 308-344 (708)
431 PRK02006 murD UDP-N-acetylmura 92.9 0.17 3.6E-06 48.2 5.1 34 30-63 7-40 (498)
432 TIGR02354 thiF_fam2 thiamine b 92.9 0.19 4.1E-06 42.1 4.9 35 28-62 19-54 (200)
433 TIGR00561 pntA NAD(P) transhyd 92.8 0.16 3.4E-06 48.6 4.7 35 29-63 163-197 (511)
434 cd05191 NAD_bind_amino_acid_DH 92.7 0.31 6.8E-06 34.7 5.2 33 29-61 22-55 (86)
435 TIGR02853 spore_dpaA dipicolin 92.7 0.16 3.5E-06 44.9 4.4 35 30-64 151-185 (287)
436 PRK15461 NADH-dependent gamma- 92.6 0.17 3.6E-06 44.9 4.4 33 31-63 2-34 (296)
437 PLN02712 arogenate dehydrogena 92.5 0.24 5.3E-06 49.0 5.8 59 5-63 343-402 (667)
438 KOG2304 3-hydroxyacyl-CoA dehy 92.5 0.14 3E-06 43.6 3.5 37 29-65 10-46 (298)
439 cd05311 NAD_bind_2_malic_enz N 92.5 0.23 5.1E-06 42.3 5.0 34 30-63 25-61 (226)
440 KOG2311 NAD/FAD-utilizing prot 92.4 0.21 4.5E-06 47.0 4.8 35 28-62 26-60 (679)
441 PF02254 TrkA_N: TrkA-N domain 92.4 0.22 4.8E-06 37.2 4.2 32 33-64 1-32 (116)
442 COG2072 TrkA Predicted flavopr 92.3 0.21 4.5E-06 47.0 4.9 39 28-66 173-211 (443)
443 PRK00683 murD UDP-N-acetylmura 92.3 0.19 4E-06 46.8 4.5 34 30-63 3-36 (418)
444 PRK00066 ldh L-lactate dehydro 92.2 0.28 6E-06 44.0 5.4 35 30-64 6-42 (315)
445 TIGR00507 aroE shikimate 5-deh 92.2 0.24 5.2E-06 43.3 4.9 34 30-63 117-150 (270)
446 PLN02712 arogenate dehydrogena 92.2 0.3 6.5E-06 48.4 5.9 36 28-63 50-85 (667)
447 PRK11559 garR tartronate semia 92.2 0.2 4.3E-06 44.2 4.4 33 31-63 3-35 (296)
448 PF00670 AdoHcyase_NAD: S-aden 92.2 0.22 4.8E-06 40.2 4.2 35 30-64 23-57 (162)
449 KOG0409 Predicted dehydrogenas 92.1 0.26 5.7E-06 43.6 4.8 37 28-64 33-69 (327)
450 TIGR00872 gnd_rel 6-phosphoglu 92.1 0.22 4.8E-06 44.2 4.5 34 31-64 1-34 (298)
451 PRK09496 trkA potassium transp 92.1 0.2 4.4E-06 46.8 4.5 34 31-64 1-34 (453)
452 PRK01390 murD UDP-N-acetylmura 92.1 0.18 4E-06 47.4 4.2 33 30-62 9-41 (460)
453 cd01065 NAD_bind_Shikimate_DH 92.0 0.33 7.1E-06 38.2 5.1 34 30-63 19-53 (155)
454 PF10727 Rossmann-like: Rossma 92.0 0.093 2E-06 40.7 1.8 34 27-60 7-40 (127)
455 TIGR00936 ahcY adenosylhomocys 92.0 0.25 5.4E-06 45.9 4.9 35 29-63 194-228 (406)
456 PRK12548 shikimate 5-dehydroge 92.0 0.29 6.3E-06 43.3 5.1 34 30-63 126-160 (289)
457 PTZ00318 NADH dehydrogenase-li 92.0 0.25 5.4E-06 46.1 4.9 35 31-65 174-222 (424)
458 PRK11749 dihydropyrimidine deh 91.9 0.24 5.1E-06 46.6 4.8 34 30-63 273-307 (457)
459 PRK12778 putative bifunctional 91.8 0.23 5E-06 49.8 4.8 34 30-63 570-604 (752)
460 PF03807 F420_oxidored: NADP o 91.8 0.28 6E-06 35.4 4.1 33 32-64 1-37 (96)
461 PF00899 ThiF: ThiF family; I 91.8 0.28 6E-06 38.1 4.3 34 30-63 2-36 (135)
462 PRK09599 6-phosphogluconate de 91.8 0.23 5E-06 44.1 4.3 32 32-63 2-33 (301)
463 PRK11199 tyrA bifunctional cho 91.7 0.24 5.2E-06 45.5 4.4 34 30-63 98-132 (374)
464 COG3634 AhpF Alkyl hydroperoxi 91.7 0.14 3.1E-06 46.4 2.7 34 30-63 354-387 (520)
465 PRK05476 S-adenosyl-L-homocyst 91.5 0.31 6.8E-06 45.5 5.0 36 29-64 211-246 (425)
466 PLN02695 GDP-D-mannose-3',5'-e 91.4 0.43 9.2E-06 43.6 5.8 34 29-62 20-54 (370)
467 cd01078 NAD_bind_H4MPT_DH NADP 91.4 0.38 8.2E-06 39.7 5.0 33 30-62 28-61 (194)
468 PRK03803 murD UDP-N-acetylmura 91.4 0.26 5.6E-06 46.2 4.4 33 31-63 7-39 (448)
469 COG0686 Ald Alanine dehydrogen 91.3 0.2 4.4E-06 44.6 3.3 34 30-63 168-201 (371)
470 PRK00258 aroE shikimate 5-dehy 91.2 0.37 7.9E-06 42.4 4.9 34 30-63 123-157 (278)
471 cd05290 LDH_3 A subgroup of L- 91.2 0.34 7.4E-06 43.3 4.7 32 32-63 1-34 (307)
472 PRK12490 6-phosphogluconate de 91.2 0.32 7E-06 43.1 4.6 32 32-63 2-33 (299)
473 PRK07502 cyclohexadienyl dehyd 91.1 0.32 6.9E-06 43.3 4.5 33 31-63 7-41 (307)
474 cd01339 LDH-like_MDH L-lactate 91.1 0.28 6.1E-06 43.5 4.2 32 33-64 1-33 (300)
475 PRK03806 murD UDP-N-acetylmura 91.1 0.31 6.6E-06 45.6 4.6 34 30-63 6-39 (438)
476 COG2910 Putative NADH-flavin r 91.0 0.34 7.3E-06 40.1 4.1 33 31-63 1-34 (211)
477 PRK09496 trkA potassium transp 91.0 0.34 7.3E-06 45.3 4.8 36 29-64 230-265 (453)
478 KOG3851 Sulfide:quinone oxidor 91.0 0.23 4.9E-06 44.5 3.3 35 29-63 38-74 (446)
479 COG3349 Uncharacterized conser 90.9 1 2.2E-05 42.7 7.8 91 137-227 350-462 (485)
480 PTZ00117 malate dehydrogenase; 90.9 0.4 8.6E-06 43.1 4.9 34 30-63 5-39 (319)
481 PRK03815 murD UDP-N-acetylmura 90.8 0.29 6.3E-06 45.4 4.1 31 31-62 1-31 (401)
482 KOG1335 Dihydrolipoamide dehyd 90.8 0.13 2.8E-06 47.1 1.7 41 30-70 211-251 (506)
483 PTZ00142 6-phosphogluconate de 90.8 0.26 5.7E-06 46.7 3.8 35 31-65 2-36 (470)
484 PRK12550 shikimate 5-dehydroge 90.8 0.4 8.7E-06 42.1 4.7 33 31-63 123-156 (272)
485 TIGR01087 murD UDP-N-acetylmur 90.7 0.31 6.8E-06 45.4 4.2 32 32-63 1-32 (433)
486 TIGR01809 Shik-DH-AROM shikima 90.5 0.45 9.7E-06 42.0 4.8 34 30-63 125-159 (282)
487 TIGR02964 xanthine_xdhC xanthi 90.5 0.49 1.1E-05 40.9 5.0 37 28-64 98-134 (246)
488 COG2085 Predicted dinucleotide 90.4 0.39 8.5E-06 40.4 4.1 30 31-60 2-31 (211)
489 PRK06545 prephenate dehydrogen 90.4 0.38 8.3E-06 43.9 4.4 34 31-64 1-34 (359)
490 PRK15059 tartronate semialdehy 90.4 0.41 8.8E-06 42.4 4.4 32 32-63 2-33 (292)
491 PRK12475 thiamine/molybdopteri 90.3 0.47 1E-05 43.0 4.9 36 28-63 22-58 (338)
492 cd05213 NAD_bind_Glutamyl_tRNA 90.2 0.46 9.9E-06 42.5 4.7 35 29-63 177-212 (311)
493 PLN02520 bifunctional 3-dehydr 90.1 0.49 1.1E-05 45.6 5.0 33 30-62 379-411 (529)
494 PRK14027 quinate/shikimate deh 90.0 0.5 1.1E-05 41.8 4.7 34 30-63 127-161 (283)
495 PLN02172 flavin-containing mon 90.0 0.33 7.1E-06 45.9 3.7 34 30-63 204-237 (461)
496 PLN02494 adenosylhomocysteinas 90.0 0.49 1.1E-05 44.7 4.8 34 30-63 254-287 (477)
497 PRK00045 hemA glutamyl-tRNA re 90.0 0.49 1.1E-05 44.2 4.8 35 29-63 181-216 (423)
498 PRK08017 oxidoreductase; Provi 89.9 0.49 1.1E-05 40.2 4.5 33 31-63 3-36 (256)
499 TIGR01035 hemA glutamyl-tRNA r 89.9 0.51 1.1E-05 44.1 4.9 35 29-63 179-214 (417)
500 PRK07831 short chain dehydroge 89.8 0.87 1.9E-05 39.0 6.0 36 28-63 15-52 (262)
No 1
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=1.2e-25 Score=207.98 Aligned_cols=197 Identities=21% Similarity=0.163 Sum_probs=120.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH----HH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF----FM 103 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~----f~ 103 (260)
+..++|+|||||+|||++|+.|.++|++++||||.+++||.|.+..... +...++|...-.++-+.+..+ |+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~----~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE----VVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc----ccccchhhhhhccCChhhhcCCCCCCc
Confidence 3468999999999999999999999999999999999999998653111 122222221111111111110 11
Q ss_pred HH-HHHHHhhcCccccCCC--CCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH------hhh
Q 024958 104 DV-YRQLRQALGFLLRTPD--AGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR------QSL 174 (260)
Q Consensus 104 ~~-~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~------~p~ 174 (260)
+- .+.+.....++.|+.+ .+|.....+.+...+...+.... ..|.+....+.. ...+++++++++ +|+
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~--~~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT--QIEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc--ceeEEEeeEEEEcccCcCCCC
Confidence 11 1111111111222221 12222222222221111111110 113332222111 034566666665 599
Q ss_pred ccCCCC--CCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958 175 YRGGPG--KVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 234 (260)
Q Consensus 175 ~p~~pG--~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~ 234 (260)
+|.++| ++.|.|+++|| ++|+.++.|. ++.|+|||+|+||.||+.+|+..|++|+.+
T Consensus 157 ~P~~~g~~~~~f~G~~iHS-~~Yk~~e~f~--~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~ 215 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHS-HDYKSPEKFR--DKVVLVVGCGNSGMDISLDLLRVAKEVHLS 215 (448)
T ss_pred CCcCCCCchhhcCCcceeh-hhccCccccc--CceEEEECCCccHHHHHHHHHHhccCccee
Confidence 999888 78999999999 9999999998 899999999999999999999999988754
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.89 E-value=6.4e-27 Score=221.79 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=101.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CCcEeeeceeEEcCcchHHHHHH----H-----
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGNHIEMGLHIFFGCYNNLFRLM----K----- 99 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~----~----- 99 (260)
.++|+|||||++||++|..|.+.|++++||||++.+||.|+..... +|. ..+|.+...|..+.+ +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~-----~~~y~sl~~n~sk~~~~fsdfp~p~ 75 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGR-----SSVYDSLHTNTSKEMMAFSDFPFPE 75 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSE-----GGGSTT-B-SS-GGGSCCTTS-HCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCc-----cccccceEEeeCchHhcCCCcCCCC
Confidence 3789999999999999999999999999999999999999853211 111 011111000000000 0
Q ss_pred --------HHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcC-C--cchhhHHHhcCCCCCCCCChhHHHHH
Q 024958 100 --------KFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGE-G--QGSLLQCVLTPGNPYMPLPNDEIIRR 168 (260)
Q Consensus 100 --------~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~sl~~~v~~~~~~~~~~~~~el~~a 168 (260)
.-+.+..+.+.+..++ ...+.+++.+.-.+. . .....|.+.... ......+.|++
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f~L-----------~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~---~g~~~~~~fD~ 141 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHFGL-----------RKHIRFNTEVVSVERDPDFSATGKWEVTTEN---DGKEETEEFDA 141 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHTTG-----------GGGEETSEEEEEEEEETTTT-ETEEEEEETT---TTEEEEEEECE
T ss_pred CCCCCCCHHHHHHHHHHHHhhhCC-----------cceEEEccEEeEeeeccccCCCceEEEEeec---CCeEEEEEeCe
Confidence 0000111111111111 111112211111110 0 000112222111 11122344555
Q ss_pred HHH------hhhccC--CCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 169 VAR------QSLYRG--GPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 169 v~~------~p~~p~--~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
+++ .|++|. +||++.|+|+++|| ++|+.|..|. ||+|+|+|.|+||.|||.||+++|++|+.
T Consensus 142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS-~~yr~~~~f~--gKrVlVVG~g~Sg~DIa~el~~~a~~v~~ 211 (531)
T PF00743_consen 142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHS-KDYRDPEPFK--GKRVLVVGGGNSGADIAVELSRVAKKVYL 211 (531)
T ss_dssp EEEEE-SSSCESB-----CTGGGHCSEEEEG-GG--TGGGGT--TSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred EEEcCCCcCCCCCChhhhhhhhcCCeeEEcc-ccCcChhhcC--CCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence 544 788995 99999999999999 9999999987 99999999999999999999999988654
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.1e-24 Score=199.93 Aligned_cols=193 Identities=15% Similarity=0.122 Sum_probs=121.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHH-----HHHHHHH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL-----FRLMKKF 101 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~-----~~~~~~~ 101 (260)
....+|+|||||++||++|++|+++|.+ ++||||++.+||.|+... +++.+++...+.+...+... +.-..++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-y~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-YPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-CCceEECCchheeccCCCccCCcccCCCcccH
Confidence 4568999999999999999999999998 999999999999998654 78888877665553211111 1111110
Q ss_pred HHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHH--HHHhhhccCCC
Q 024958 102 FMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRR--VARQSLYRGGP 179 (260)
Q Consensus 102 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~a--v~~~p~~p~~p 179 (260)
.+...++.+..+. -.++.+...+...++.+..-.|.+....+.......+.++.+ ....|++|+|+
T Consensus 85 -~~y~~~~~~~y~~-----------~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~ 152 (443)
T COG2072 85 -KDYIKDYLEKYGL-----------RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA 152 (443)
T ss_pred -HHHHHHHHHHcCc-----------eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC
Confidence 0111111111111 011112222222222222111222211111100112222222 23389999999
Q ss_pred CCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHHHH
Q 024958 180 GKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRK 236 (260)
Q Consensus 180 G~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~~~ 236 (260)
|+++|.|.++|| ++|+.+.+|. ||+|+|||+|+||+||+.+|.+.+++|+.+-.
T Consensus 153 G~~~f~g~~~HS-~~~~~~~~~~--GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 153 GLDEFKGRILHS-ADWPNPEDLR--GKRVLVIGAGASAVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred CccCCCceEEch-hcCCCccccC--CCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence 999999999999 8888887777 99999999999999999999999988876543
No 4
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.81 E-value=1.7e-22 Score=189.03 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=56.2
Q ss_pred hhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958 172 QSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 234 (260)
Q Consensus 172 ~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~ 234 (260)
.|++|++||++.|.|.++|+ +.|+.+..|. ++.|+|+|+|+||.++|.+|++.+++|+.+
T Consensus 174 ~P~~P~ipG~~~f~G~~iHs-~~yr~~~~~~--gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~ 233 (461)
T PLN02172 174 EPNVAHIPGIKSWPGKQIHS-HNYRVPDPFK--NEVVVVIGNFASGADISRDIAKVAKEVHIA 233 (461)
T ss_pred CCcCCCCCCcccCCceEEEe-cccCCccccC--CCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence 78999999999999999999 9999999987 899999999999999999999999998763
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.58 E-value=8.2e-18 Score=140.32 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=85.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEcccCcccccceeeecCCCcEeeeceeEEc---------CcchHHHHHHH----
Q 024958 34 AIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF---------GCYNNLFRLMK---- 99 (260)
Q Consensus 34 ~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~---------~~~~~~~~~~~---- 99 (260)
+|||||++||++|+.|.++|++ ++|||+++.+||.|..+....... .+..+. ....+....+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLH---SPSFFSSDFGLPDFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-B---SSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccc---cCccccccccCCcccccccccCCCCCCCcc
Confidence 6999999999999999999999 999999999999998543221110 011110 00000000000
Q ss_pred ----HHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH--hh
Q 024958 100 ----KFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR--QS 173 (260)
Q Consensus 100 ----~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~--~p 173 (260)
+.+.+..+++.+..++. ..+...+.-.+.....| .+..... .....+.++.+... .|
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~-------------i~~~~~V~~v~~~~~~w--~v~~~~~--~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLE-------------IRFNTRVESVRRDGDGW--TVTTRDG--RTIRADRVVLATGHYSHP 140 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGG-------------EETS--EEEEEEETTTE--EEEETTS---EEEEEEEEE---SSCSB
T ss_pred cCCHHHHHHHHHHHHhhcCcc-------------cccCCEEEEEEEeccEE--EEEEEec--ceeeeeeEEEeeeccCCC
Confidence 00111111221111110 00111111111111111 1111010 11224445555544 78
Q ss_pred hccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 174 LYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 174 ~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
.+|++|| +.+. ..+|+ ..++.+..|. ++.|+|+|.|+||.|++.+|++.+++|+.
T Consensus 141 ~~p~~~g-~~~~-~~~h~-~~~~~~~~~~--~k~V~VVG~G~SA~d~a~~l~~~g~~V~~ 195 (203)
T PF13738_consen 141 RIPDIPG-SAFR-PIIHS-ADWRDPEDFK--GKRVVVVGGGNSAVDIAYALAKAGKSVTL 195 (203)
T ss_dssp ---S-TT-GGCS-EEEEG-GG-STTGGCT--TSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred Ccccccc-cccc-ceEeh-hhcCChhhcC--CCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence 8999999 3334 66888 6777777666 89999999999999999999999987765
No 6
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.56 E-value=7.4e-15 Score=101.91 Aligned_cols=65 Identities=40% Similarity=0.762 Sum_probs=56.7
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC--cchHHHHHHHH
Q 024958 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK 100 (260)
Q Consensus 35 VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~--~~~~~~~~~~~ 100 (260)
|||||++||++|+.|+++|++|+|||+++.+||++++.. .++..+|.|++++.. .++++++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeCCCCchHHHHHHcC
Confidence 899999999999999999999999999999999999887 478999999999976 46777777664
No 7
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=4.9e-14 Score=130.37 Aligned_cols=71 Identities=56% Similarity=1.042 Sum_probs=69.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
++|+|+|||++||+||+.|+++|++|+|+|+++.+||.+.+|.+.+|...+.|.|+|.+.|.|+++++.++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~ 71 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKEL 71 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999887
No 8
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.43 E-value=3.2e-13 Score=127.29 Aligned_cols=73 Identities=41% Similarity=0.736 Sum_probs=65.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHH
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~ 98 (260)
..+.+++|+|||||+|||+||..|.+.|++|+|||+.+++|||.+++....+..+|.|.+++++.+.+.+..+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l 83 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALL 83 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHH
Confidence 4456789999999999999999999999999999999999999999987777779999999999998665543
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.37 E-value=7.6e-13 Score=123.25 Aligned_cols=70 Identities=34% Similarity=0.561 Sum_probs=62.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
++|+|||||+|||+||+.|+++| ++|+|||+++++||++++.. .+|..+|.|+|++.+.+++++.+++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 72 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKEL 72 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHc
Confidence 57999999999999999999988 89999999999999999876 578899999998888888877777664
No 10
>PLN02487 zeta-carotene desaturase
Probab=99.36 E-value=2.9e-12 Score=122.76 Aligned_cols=87 Identities=91% Similarity=1.485 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHH
Q 024958 15 PKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL 94 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~ 94 (260)
|..+.++.+.....+.++|+|||||++||++|+.|.++|++|+|||+.+.+||.+.++.+..|..+|.|.|++.+.++++
T Consensus 60 ~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~ 139 (569)
T PLN02487 60 PKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNL 139 (569)
T ss_pred cccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHH
Confidence 34566666655556678999999999999999999999999999999999999999887667999999999999989888
Q ss_pred HHHHHHH
Q 024958 95 FRLMKKF 101 (260)
Q Consensus 95 ~~~~~~~ 101 (260)
+++++++
T Consensus 140 ~~ll~~L 146 (569)
T PLN02487 140 FRLMKKV 146 (569)
T ss_pred HHHHHhc
Confidence 8887665
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.36 E-value=1.4e-12 Score=122.05 Aligned_cols=71 Identities=30% Similarity=0.445 Sum_probs=65.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.++|+|||||++||+||++|.++ |++|+|||+++++||++++.. .+|..+|.|+|+++..+++++++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHc
Confidence 36899999999999999999999 999999999999999999875 678999999999999888888887765
No 12
>PRK07208 hypothetical protein; Provisional
Probab=99.35 E-value=2.1e-12 Score=121.67 Aligned_cols=72 Identities=35% Similarity=0.569 Sum_probs=66.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
..++|+|||||++||+||+.|.++|++|+|+|+++++||++++.. .+|..+|.|+|++...+++++++++++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l 74 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEI 74 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHh
Confidence 457899999999999999999999999999999999999998765 678999999999998899998888876
No 13
>PLN02268 probable polyamine oxidase
Probab=99.32 E-value=3e-12 Score=119.23 Aligned_cols=70 Identities=34% Similarity=0.541 Sum_probs=59.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc--chHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC--YNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~--~~~~~~~~~~~ 101 (260)
++|+|||||+|||+||+.|.++|++|+|||+++++||++++.. ..|..+|+|++|+++. .+.+.++.+++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~l 72 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRL 72 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHh
Confidence 4899999999999999999999999999999999999998764 5688899999999863 33455555553
No 14
>PRK07233 hypothetical protein; Provisional
Probab=99.30 E-value=3.3e-12 Score=118.24 Aligned_cols=69 Identities=36% Similarity=0.616 Sum_probs=63.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
+|+|||||++||+||+.|+++|++|+|||+++++||+++++. .+|..+|.|.|++...++++.++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~l 69 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDEL 69 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHc
Confidence 699999999999999999999999999999999999998876 568899999999988888888887765
No 15
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.29 E-value=3.6e-12 Score=119.57 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=62.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
++|+|||||++||+||+.|.+. |++|+|||+++++||++++.. ..|..+|.|+|++...+.+++++++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~l 77 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDL 77 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHc
Confidence 4799999999999999999986 379999999999999999876 568899999999988888888877775
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.29 E-value=6.5e-12 Score=118.83 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=63.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958 27 GGPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK 100 (260)
Q Consensus 27 ~~~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~ 100 (260)
..+.++|+|||||++||+||++|.++ |++|+|||+++++||++++.. .+|..+|.|+|++...++.+..+.+.
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~ 82 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS 82 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc
Confidence 34557999999999999999999999 999999999999999999876 57899999999998777766555443
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.29 E-value=7.2e-12 Score=117.25 Aligned_cols=70 Identities=50% Similarity=0.877 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
+|+|||||++||++|+.|.++|++|+|||+++.+||+++++...+|..+|.|.|++...+++++++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l 70 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL 70 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc
Confidence 5899999999999999999999999999999999999988765678999999999999899988888765
No 18
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=6.6e-12 Score=118.75 Aligned_cols=70 Identities=30% Similarity=0.504 Sum_probs=59.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcch-HHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRLMK 99 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~-~~~~~~~ 99 (260)
+.+||+|||||++||+||.+|+++|++|+||||++.+||+.++.. ..|+++|.|++++..... .++..+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~ 72 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELG 72 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhc
Confidence 568999999999999999999999999999999999999999886 569999999998865332 4444443
No 19
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.27 E-value=1e-11 Score=117.09 Aligned_cols=70 Identities=84% Similarity=1.393 Sum_probs=65.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
+|+|||||++||++|+.|+++|++|+|||+++.+||+++++...+|..+|.|+|++.+.+++++++++++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l 70 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV 70 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc
Confidence 5899999999999999999999999999999999999998766689999999999999999988887765
No 20
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=109.17 Aligned_cols=75 Identities=32% Similarity=0.612 Sum_probs=66.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee---cCCCcEeeeceeEEcC-cchHHHHHHHHH
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHIFFG-CYNNLFRLMKKF 101 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~---~~~g~~~d~g~~~~~~-~~~~~~~~~~~~ 101 (260)
+..+.++|+|||+|++||+||+.|.++ ++|++||+++++||..++.. +..|..+|.|.++|+. +|+++.++++.+
T Consensus 4 ~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~i 82 (447)
T COG2907 4 QPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTI 82 (447)
T ss_pred CCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHc
Confidence 345778999999999999999999876 89999999999999998863 4567788999999996 899999999887
No 21
>PLN02612 phytoene desaturase
Probab=99.22 E-value=4.7e-11 Score=114.93 Aligned_cols=73 Identities=49% Similarity=0.808 Sum_probs=67.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.+++|+|||||++||++|++|.++|++|+|+|+++.+||+..++.+.+|..+|.|.|++.+.++++.++++++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el 164 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL 164 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh
Confidence 3578999999999999999999999999999999999999998875688999999999999999988887775
No 22
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.21 E-value=4.2e-11 Score=109.64 Aligned_cols=70 Identities=36% Similarity=0.591 Sum_probs=61.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKK 100 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~ 100 (260)
.++|+|||||+|||+||.+|.+.|+ +|+|||+.+++|||+++.. +.+..+++|++|+++ .-+.+++..++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~-~~d~~ielGAqwihG~~gNpVY~la~~ 92 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIP-FADGVIELGAQWIHGEEGNPVYELAKE 92 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEE-cCCCeEeecceeecCCCCChHHHHHHH
Confidence 3689999999999999999997775 9999999999999999887 555589999999998 56777777664
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.18 E-value=5e-11 Score=110.47 Aligned_cols=70 Identities=34% Similarity=0.600 Sum_probs=62.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
++|+|||||++||+|||+|++++ .+++|||+.+++||..++.. .+|+.+|.|+|.+...-..+.+++.++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKEL 72 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHh
Confidence 47999999999999999999999 99999999999999999885 899999999999876546666666665
No 24
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.16 E-value=6.4e-11 Score=112.31 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=52.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (260)
Q Consensus 33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~ 89 (260)
|+|||||++||+||..|+++|++|+|+|+++.+||+++++. .+|+.+|.|++++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~ 56 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITM 56 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcc
Confidence 68999999999999999999999999999999999999887 589999999999864
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.13 E-value=8.6e-11 Score=111.21 Aligned_cols=58 Identities=33% Similarity=0.576 Sum_probs=54.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~ 89 (260)
+||+|||||++||+||..|+++|++|+|||+++.+||+.+++. .+|+.+|.|+|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~ 59 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAG 59 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEe
Confidence 6899999999999999999999999999999999999999886 589999999999864
No 26
>PLN02568 polyamine oxidase
Probab=99.12 E-value=1.7e-10 Score=110.19 Aligned_cols=70 Identities=30% Similarity=0.551 Sum_probs=59.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc-hHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY-NNLFRLMKK 100 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G-----~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~-~~~~~~~~~ 100 (260)
.++|+|||||++||++|+.|++.| ++|+|||+++++||++++.. ..|..+|.|++++++.. ..++++.++
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~ 80 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQE 80 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHH
Confidence 468999999999999999999887 89999999999999999876 56889999999998653 444444444
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.09 E-value=2.8e-10 Score=97.57 Aligned_cols=69 Identities=28% Similarity=0.503 Sum_probs=59.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK 100 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~ 100 (260)
.+|+|||||++||+||+.|+.+|++|+||||...+|||..+.. .++..+|.|...|........+..+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~ 70 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEA 70 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHH
Confidence 4699999999999999999999999999999999999999876 67778999999997766555555443
No 28
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.09 E-value=1.6e-11 Score=107.87 Aligned_cols=166 Identities=17% Similarity=0.108 Sum_probs=87.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec---CCCcEeeeceeEEcCcchHHHHHHHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID---KHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYR 107 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~---~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~ 107 (260)
+||+|||||++||++|..|++.|++|+|+|+++ +||.|..... +++... . ....++...+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~-----~--~~~~~~~~~l~~------- 65 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPE-----G--ISGPELMEKMKE------- 65 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCC-----C--CChHHHHHHHHH-------
Confidence 489999999999999999999999999999886 7887753210 011000 0 000111111111
Q ss_pred HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958 108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD 187 (260)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~ 187 (260)
.+. ..++..+... +.. .+.....+ .+..... .....+.++.+....|..|.+||.+.|.+.
T Consensus 66 ~~~-~~gv~~~~~~----------v~~----v~~~~~~~--~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~~ 126 (300)
T TIGR01292 66 QAV-KFGAEIIYEE----------VIK----VDLSDRPF--KVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLGR 126 (300)
T ss_pred HHH-HcCCeEEEEE----------EEE----EEecCCee--EEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCCc
Confidence 111 1121110000 000 00000000 0000000 012223333444446667778888777665
Q ss_pred CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
..|. ..+... ....+++++|+|+|.+|.++|.+|.+.+++|+.
T Consensus 127 ~~~~-~~~~~~--~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~ 169 (300)
T TIGR01292 127 GVSY-CATCDG--PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTL 169 (300)
T ss_pred cEEE-eeecCh--hhcCCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence 4443 112112 223478899999999999999999987766554
No 29
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.07 E-value=3.7e-11 Score=121.19 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||+|||+||+.|+++|++|+|||+.+.+||.++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 368999999999999999999999999999999999999876
No 30
>PRK10262 thioredoxin reductase; Provisional
Probab=99.06 E-value=1.3e-11 Score=110.53 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHHHHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKKFFMDVYR 107 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~~f~~~~~ 107 (260)
..++|+|||||++||+||..|+++|+++++||+. ..||.+...... .++. -.... ..+.+.+.+.+ ...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~----~~~ 74 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEV----ENWP-GDPNDLTGPLLMERMHE----HAT 74 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceE----CCCC-CCCCCCCHHHHHHHHHH----HHH
Confidence 4589999999999999999999999999999964 678886532110 0000 00000 00111111111 111
Q ss_pred HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958 108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD 187 (260)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~ 187 (260)
.+ +. ....+ .+.. .+. ....+ .+.... .....+.++-+....|..|++||.+.|.+.
T Consensus 75 ~~----~~-~~~~~---------~v~~-v~~---~~~~~--~v~~~~---~~~~~d~vilAtG~~~~~~~i~g~~~~~~~ 131 (321)
T PRK10262 75 KF----ET-EIIFD---------HINK-VDL---QNRPF--RLTGDS---GEYTCDALIIATGASARYLGLPSEEAFKGR 131 (321)
T ss_pred HC----CC-EEEee---------EEEE-EEe---cCCeE--EEEecC---CEEEECEEEECCCCCCCCCCCCCHHHcCCC
Confidence 11 00 00000 0000 000 00000 000000 011233344444446677888898877776
Q ss_pred CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958 188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 234 (260)
Q Consensus 188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~ 234 (260)
..|.... ...+...++.++|+|.|++|.++|.+|++.+++|+.+
T Consensus 132 ~v~~~~~---~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv 175 (321)
T PRK10262 132 GVSACAT---CDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLI 175 (321)
T ss_pred cEEEeec---CCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence 6554221 2334445889999999999999999999887776553
No 31
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=4.8e-10 Score=98.22 Aligned_cols=71 Identities=31% Similarity=0.446 Sum_probs=62.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CC-cEeeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HG-NHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g-~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.|++|||||++|+..|..+++.|+.|.|+||.+++||++++..+. .| ..+.+|+|+++...+++|..+..+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F 74 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQF 74 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhh
Confidence 689999999999999999999999999999999999999976653 34 444889999999999999988775
No 32
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.03 E-value=4.1e-10 Score=106.67 Aligned_cols=58 Identities=31% Similarity=0.617 Sum_probs=54.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~ 89 (260)
.||+|||||++||++|..|+++|++|+||||++.+||+.+++. .+|+.+|.|++++.+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~ 58 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFG 58 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhhee
Confidence 4799999999999999999999999999999999999999876 589999999998754
No 33
>PLN02676 polyamine oxidase
Probab=99.03 E-value=7.2e-10 Score=104.89 Aligned_cols=70 Identities=31% Similarity=0.481 Sum_probs=59.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcC----cchHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG----CYNNLFRLMKK 100 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~----~~~~~~~~~~~ 100 (260)
.++|+|||||++||+||++|+++|+ +|+|||+++++||++.+.. ..|..+|.|.+|++. ..+.++++.++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence 4689999999999999999999998 6999999999999998764 678899999999964 23445554443
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.00 E-value=1.2e-09 Score=99.89 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=59.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcE-eeeceeEEcCcchHHHHHHHHH
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~-~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.||+|||||++|+++|++|++.|.+|+|+|+++.+||.+.+.. ..+.. .+.|+|+++.....++..+.++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~ 72 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPF 72 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhh
Confidence 5899999999999999999999999999999999999877654 34433 4899999988788887776654
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.98 E-value=1.2e-09 Score=103.84 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=60.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.++|+|||||++||+||++|++. |++|+|||+++.+||++..+.. .+|+.++.|+.. ...|.+++++++.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll~~i 97 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLFRSI 97 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHHHhc
Confidence 47999999999999999999996 6899999999999999986532 468888888765 67788888887664
No 36
>PLN02529 lysine-specific histone demethylase 1
Probab=98.98 E-value=1.5e-09 Score=106.63 Aligned_cols=66 Identities=35% Similarity=0.520 Sum_probs=56.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CC--cEeeeceeEEcCcchH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HG--NHIEMGLHIFFGCYNN 93 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g--~~~d~g~~~~~~~~~~ 93 (260)
...++|+|||||++||+||..|+++|++|+|||+++++||++++.... +| ..+|+|++|+++...+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~n 226 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHAN 226 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccc
Confidence 456899999999999999999999999999999999999999876532 13 3789999999876544
No 37
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.97 E-value=8.3e-11 Score=112.11 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=88.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHHHHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQ 108 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~~ 108 (260)
..+||+|||||++||+||..|++.|++|+|++. .+||+|.... .++.-+.+.......+...+ ...
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~-----~~~~~~~~~~~~~~~l~~~l-------~~~ 275 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTM-----GIENFISVPETEGPKLAAAL-------EEH 275 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccC-----cccccCCCCCCCHHHHHHHH-------HHH
Confidence 358999999999999999999999999999976 4899885311 11100000000111111111 111
Q ss_pred HHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCCC
Q 024958 109 LRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQ 188 (260)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~~ 188 (260)
+..+ ++..+.. ..+... ...... +.+...... ....+.++-+....+..|++||.+.|.+..
T Consensus 276 ~~~~-gv~i~~~---------~~V~~I----~~~~~~--~~V~~~~g~--~i~a~~vViAtG~~~r~~~ipG~~~~~~~~ 337 (517)
T PRK15317 276 VKEY-DVDIMNL---------QRASKL----EPAAGL--IEVELANGA--VLKAKTVILATGARWRNMNVPGEDEYRNKG 337 (517)
T ss_pred HHHC-CCEEEcC---------CEEEEE----EecCCe--EEEEECCCC--EEEcCEEEECCCCCcCCCCCCCHHHhcCce
Confidence 2111 2111100 000000 000000 000000000 112223333333355667788887787754
Q ss_pred CCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 189 KTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 189 ~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
.|.... ...+...++.++|+|+|++|.++|..|+..+++|++
T Consensus 338 v~~~~~---~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl 379 (517)
T PRK15317 338 VAYCPH---CDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTV 379 (517)
T ss_pred EEEeec---cCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence 443111 122223588999999999999999999988777654
No 38
>PRK12831 putative oxidoreductase; Provisional
Probab=98.97 E-value=2.9e-10 Score=106.95 Aligned_cols=42 Identities=38% Similarity=0.529 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++||++|+.|+++|++|+|||+.+.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 458999999999999999999999999999999999999875
No 39
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.97 E-value=5e-10 Score=105.55 Aligned_cols=43 Identities=42% Similarity=0.506 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||||++||+||+.|++ .|++|+|||+.+.+||.+++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 45789999999999999999987 79999999999999998763
No 40
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.94 E-value=2.3e-09 Score=98.19 Aligned_cols=72 Identities=32% Similarity=0.443 Sum_probs=60.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK 100 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~ 100 (260)
+...+|+|||||++||++|+.|.+.|++|+|+|.++++|||+.+... .+...|.|-+++.++........++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~ 76 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKE 76 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHh
Confidence 45689999999999999999999999999999999999999987764 7788888877777755555555544
No 41
>PRK14694 putative mercuric reductase; Provisional
Probab=98.92 E-value=3.3e-10 Score=106.64 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 3579999999999999999999999999999986 6999986
No 42
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=3.1e-10 Score=106.00 Aligned_cols=42 Identities=36% Similarity=0.501 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC-cccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~-~~GG~~~ 70 (260)
...||+|||||++|+++|++|+++|++|+|+|+.+ .+||.|.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 35799999999999999999999999999999976 5899985
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=5.1e-10 Score=104.49 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-ccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~~~ 70 (260)
..+||+|||||++|+++|..|++.|++|+|+|+.+. +||.|.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 357999999999999999999999999999999874 699864
No 44
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.91 E-value=1.4e-10 Score=108.77 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=39.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
...||+|||||++|+++|++|+++|++|+|+|+.+.+||.|..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 4579999999999999999999999999999999999999853
No 45
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.88 E-value=6.5e-09 Score=102.79 Aligned_cols=66 Identities=33% Similarity=0.517 Sum_probs=55.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCC-C--cEeeeceeEEcCcchH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-G--NHIEMGLHIFFGCYNN 93 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~-g--~~~d~g~~~~~~~~~~ 93 (260)
...++|+|||||++||++|+.|.++|++|+|+|+++++||++++....+ + ..+|+|++|+++...+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~n 304 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGN 304 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCcc
Confidence 3468899999999999999999999999999999999999998775332 1 2579999999876544
No 46
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-10 Score=100.09 Aligned_cols=169 Identities=17% Similarity=0.131 Sum_probs=88.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHHHHHHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKKFFMDVYR 107 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~~f~~~~~ 107 (260)
...||+|||||++||+||.++.++|++++|++....+||......+..++. -+-.. .-+++.+.+.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venyp-----g~~~~~~g~~L~~~~~~------- 69 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-----GFPGGILGPELMEQMKE------- 69 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCC-----CCccCCchHHHHHHHHH-------
Confidence 347999999999999999999999999444444556777655432221111 00000 01222222221
Q ss_pred HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958 108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD 187 (260)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~ 187 (260)
+ ....+...... .+. ..+..... -.+.+..+ ......++-+....+..|.+||-+.|.|+
T Consensus 70 ~-a~~~~~~~~~~----------~v~----~v~~~~~~--F~v~t~~~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~ 129 (305)
T COG0492 70 Q-AEKFGVEIVED----------EVE----KVELEGGP--FKVKTDKG---TYEAKAVIIATGAGARKLGVPGEEEFEGK 129 (305)
T ss_pred H-HhhcCeEEEEE----------EEE----EEeecCce--EEEEECCC---eEEEeEEEECcCCcccCCCCCcchhhcCC
Confidence 1 11111100000 000 00000000 00111111 12333444444556677777776678775
Q ss_pred CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
-.|- .-.... -+.++.++|+|.|+|+++-|..|++.+++|+.
T Consensus 130 gv~y---c~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl 171 (305)
T COG0492 130 GVSY---CATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTL 171 (305)
T ss_pred ceEE---eeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence 4332 101122 23377899999999999999999999988776
No 47
>PLN03000 amine oxidase
Probab=98.85 E-value=7.1e-09 Score=102.76 Aligned_cols=68 Identities=31% Similarity=0.486 Sum_probs=58.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC---CCcEeeeceeEEcCcchHHHH
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK---HGNHIEMGLHIFFGCYNNLFR 96 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~---~g~~~d~g~~~~~~~~~~~~~ 96 (260)
..++|+|||||++||++|+.|.+.|++|+|+|+++++||++++.... .+..+|+|.+|+++...+.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~ 253 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLG 253 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHH
Confidence 35799999999999999999999999999999999999999987532 256789999999877655443
No 48
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=9.2e-10 Score=103.31 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||||++|+++|.+|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 457999999999999999999999999999999 78999986
No 49
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.84 E-value=1.6e-09 Score=107.67 Aligned_cols=42 Identities=40% Similarity=0.601 Sum_probs=39.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++||++|+.|+++|++|+|||+.+.+||.++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999875
No 50
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.83 E-value=7.3e-09 Score=93.92 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=61.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEE--EEcccCcccccceeeecCCCcEeeeceeEEcCcch---HHHHHHHHH
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVD--IYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN---NLFRLMKKF 101 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~--v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~---~~~~~~~~~ 101 (260)
.+.++|+|+|||++||++||+|++++-+|+ +||+.+++||.+++....++..+|.|+..+.+.-. ++..++.++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 456899999999999999999999987664 59999999999998555788999999999977654 555555554
No 51
>PRK14727 putative mercuric reductase; Provisional
Probab=98.83 E-value=1.6e-09 Score=102.44 Aligned_cols=43 Identities=37% Similarity=0.567 Sum_probs=40.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
.+.||+|||||++|+++|++|++.|.+|+|+|+.+.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 4579999999999999999999999999999999899999863
No 52
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.82 E-value=4.5e-09 Score=104.87 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..++|+|||||+|||++|+.|+++|++|+|||+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 5689999999999999999999999999999998776664
No 53
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.82 E-value=1.9e-09 Score=101.09 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|++||..+++.|++|+|+|+. .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 379999999999999999999999999999995 6899875
No 54
>PRK06370 mercuric reductase; Validated
Probab=98.82 E-value=2.2e-09 Score=100.98 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..+||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 3589999999999999999999999999999985 6888875
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.81 E-value=4.2e-10 Score=108.18 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++||+||..|+++|++|+|||++ .+||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 379999999999999999999999999999995 6898865
No 56
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.80 E-value=7e-10 Score=104.25 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=36.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
+||+|||||++|+++|.+++++|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 489999999999999999999999999999876 899975
No 57
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.79 E-value=1.5e-09 Score=101.84 Aligned_cols=39 Identities=28% Similarity=0.541 Sum_probs=37.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
+||+|||||++|+++|++|+++|++|+|+|+ +.+||.|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 6899999999999999999999999999999 88999986
No 58
>PRK13748 putative mercuric reductase; Provisional
Probab=98.77 E-value=1.7e-09 Score=104.02 Aligned_cols=41 Identities=39% Similarity=0.587 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..+||+|||||++|+++|.+|++.|++|.|+|++ .+||.|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3589999999999999999999999999999997 8999986
No 59
>PTZ00058 glutathione reductase; Provisional
Probab=98.76 E-value=3.4e-09 Score=101.73 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||||++|++||.++++.|.+|.|+|+. .+||.|-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 4579999999999999999999999999999986 7999875
No 60
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.76 E-value=2.1e-08 Score=91.37 Aligned_cols=62 Identities=34% Similarity=0.668 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCC-CcEeeeceeEEcCcchHHHHHHHHH
Q 024958 40 LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 40 ~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~-g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
+|||+||++|+++|++|+|||+++++||+++++.... |..+|.|++++...+.++...+.++
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l 63 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDEL 63 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHh
Confidence 5899999999999999999999999999999987543 8999999999998888887777765
No 61
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.73 E-value=9.4e-09 Score=85.92 Aligned_cols=41 Identities=34% Similarity=0.557 Sum_probs=38.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..||+|||||+|||+|||+|+++|++|+|||++..+||-.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 36999999999999999999999999999999999988754
No 62
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.70 E-value=1.9e-09 Score=102.82 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...+||+|||||++||+||..|++.|++|+|+|. .+||++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 3458999999999999999999999999999974 5899875
No 63
>PLN02976 amine oxidase
Probab=98.67 E-value=3.4e-08 Score=101.41 Aligned_cols=61 Identities=34% Similarity=0.545 Sum_probs=55.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~ 90 (260)
.++|+|||||++|+++|+.|.++|++|+|||+++.+||++++.....+..+|.|++|+++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~ 753 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGV 753 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecc
Confidence 4789999999999999999999999999999999999999876544678899999999764
No 64
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.66 E-value=2.1e-08 Score=83.98 Aligned_cols=41 Identities=37% Similarity=0.515 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..||+|||||++||+||+.|+++|++|.|||++..+||..+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 47999999999999999999999999999999999998643
No 65
>PLN02507 glutathione reductase
Probab=98.65 E-value=2.4e-09 Score=101.69 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~---------~~~~GG~~~ 70 (260)
-.+||+|||||++|+++|.++++.|++|.|+|+ .+.+||.|.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 357999999999999999999999999999996 367899985
No 66
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.55 E-value=3.9e-08 Score=93.11 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=36.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-----C---cccccce
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-----S---FIGGKVG 70 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-----~---~~GG~~~ 70 (260)
+||+|||+|++|+.+|+.+++.|++|.|+|+. . .+||.|-
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 69999999999999999999999999999974 1 5899875
No 67
>PLN02546 glutathione reductase
Probab=98.52 E-value=1.3e-08 Score=97.73 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~---------~~~~GG~~~ 70 (260)
.+||+|||+|++|+.+|..++++|++|.|+|+ ...+||.|-
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~ 128 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV 128 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence 37899999999999999999999999999997 256888875
No 68
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.52 E-value=1.8e-07 Score=87.71 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCcccccceee
Q 024958 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGSF 72 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~~GG~~~~~ 72 (260)
....|+.++.+ ..++|+|||||+|||++|.+|. +.|++|+|||+.+.+||.+++-
T Consensus 27 ~~~~~~~~~~~-----~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 27 FTGKCFFTNEA-----KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCccccCCCCC-----CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 34445554443 4578999999999999999765 6799999999999999998753
No 69
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.47 E-value=1.6e-07 Score=86.59 Aligned_cols=43 Identities=37% Similarity=0.407 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..+||+|||||+||++||++|+++|++|+||||.+.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 3589999999999999999999999999999999888875443
No 70
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.47 E-value=2.5e-07 Score=93.63 Aligned_cols=43 Identities=42% Similarity=0.613 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||||+|||+||+.|+++|++|+|||+.+.+||..+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999998753
No 71
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.46 E-value=2.1e-07 Score=80.86 Aligned_cols=39 Identities=33% Similarity=0.504 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||||++||++|+.|+++|++|+|+||+..+||.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 579999999999999999999999999999999998765
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.44 E-value=2.5e-07 Score=80.60 Aligned_cols=40 Identities=35% Similarity=0.643 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||||++||+||+.|+++|++|+|+|++..+||..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999999988754
No 73
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=4.8e-07 Score=83.56 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=34.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
...+||+|||||++|+++|..|+++|++|+|||+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34589999999999999999999999999999998764
No 74
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.39 E-value=6e-07 Score=84.31 Aligned_cols=38 Identities=39% Similarity=0.541 Sum_probs=34.3
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.....+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34556899999999999999999999999999999874
No 75
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.36 E-value=7e-07 Score=83.83 Aligned_cols=42 Identities=45% Similarity=0.660 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||+|++||++|+.|++.|++|+|||+.+.+||.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 458999999999999999999999999999999999999865
No 76
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=4.6e-07 Score=85.41 Aligned_cols=41 Identities=34% Similarity=0.478 Sum_probs=38.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|++||.+++++|++|+|+|+.+.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 47999999999999999999999999999999888999974
No 77
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.36 E-value=5.1e-07 Score=91.23 Aligned_cols=43 Identities=42% Similarity=0.637 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||||++||++|+.|+++|++|+|||+.+.+||.++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 4589999999999999999999999999999999999998763
No 78
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.35 E-value=7e-07 Score=87.61 Aligned_cols=43 Identities=40% Similarity=0.569 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||||++||++|+.|++.|++|+|||+.+.+||.+++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 4579999999999999999999999999999999999998763
No 79
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.34 E-value=6.7e-07 Score=81.51 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.||+|||||++|+++|++|+++|++|+|+|+.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~ 36 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH 36 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 489999999999999999999999999999987653
No 80
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.33 E-value=5.7e-07 Score=80.31 Aligned_cols=35 Identities=43% Similarity=0.590 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+|+|||||++||++|..|+++|++|+|||+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 58999999999999999999999999999998665
No 81
>PLN02463 lycopene beta cyclase
Probab=98.32 E-value=1.1e-06 Score=82.29 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=46.0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 5 LLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.-.+.+..+.+.-|.-.++.....||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 3 LELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cccCCCCccccccccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 444444555555555555445566678999999999999999999999999999999753
No 82
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.32 E-value=7.1e-07 Score=83.26 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
..||+|||||++|+++|+.|+++|++|+|+||.+.+|
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 5899999999999999999999999999999987665
No 83
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.32 E-value=6.8e-07 Score=78.08 Aligned_cols=38 Identities=42% Similarity=0.560 Sum_probs=34.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.||+|||||++||++|+.|++.|++|+|+|+...++..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~ 38 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK 38 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcc
Confidence 48999999999999999999999999999999877653
No 84
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.32 E-value=6.5e-07 Score=80.03 Aligned_cols=35 Identities=54% Similarity=0.797 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
||+|||||++|+++|+.|+++|++|+|+|++ .+|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence 7999999999999999999999999999999 5544
No 85
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.31 E-value=6e-07 Score=83.16 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=28.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
+||+|||||+|||.||+.++++|++|+||||++.+|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVG 36 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 489999999999999999999999999999999985
No 86
>PRK07236 hypothetical protein; Provisional
Probab=98.31 E-value=7.9e-07 Score=81.58 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+...+|+|||||++||++|+.|++.|++|+||||.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999863
No 87
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.29 E-value=8.7e-07 Score=81.32 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
..+|+|||||++||++|..|++.|++|+||||.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 4799999999999999999999999999999987654
No 88
>PRK10015 oxidoreductase; Provisional
Probab=98.29 E-value=9e-07 Score=82.61 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.+||+|||||++|++||+.|+++|++|+|+||.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4799999999999999999999999999999987653
No 89
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=8.2e-07 Score=83.49 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
.+||+|||||++|++||..|+++|++|+|+|+.. +||.|..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 4799999999999999999999999999999987 9999864
No 90
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.7e-06 Score=77.81 Aligned_cols=44 Identities=36% Similarity=0.437 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccceee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVGSF 72 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~~~~ 72 (260)
.+++|+|||+|+||+.+|++|.++ +.+|+|+|+.+.++|..++-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 345999999999999999999995 68999999999999988753
No 91
>PRK06753 hypothetical protein; Provisional
Probab=98.28 E-value=8.5e-07 Score=80.76 Aligned_cols=36 Identities=44% Similarity=0.825 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
++|+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999997653
No 92
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.28 E-value=1.2e-06 Score=85.85 Aligned_cols=42 Identities=45% Similarity=0.717 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++||++|+.|++.|++|+|||+.+.+||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999875
No 93
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=82.16 Aligned_cols=42 Identities=40% Similarity=0.616 Sum_probs=39.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
.++|+|||||++||++|..|+++|++|+|||+.+.+||+..+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 389999999999999999999999999999999999999764
No 94
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=89.92 Aligned_cols=41 Identities=39% Similarity=0.652 Sum_probs=38.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.++|+|||||++||++|+.|+++|++|+|||+.+.+||..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 57999999999999999999999999999999999999865
No 95
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.28 E-value=1.3e-06 Score=85.58 Aligned_cols=43 Identities=40% Similarity=0.563 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||+|++||++|+.|+++|++|+|||+.+.+||.+++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 3689999999999999999999999999999999999998763
No 96
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.27 E-value=1.5e-06 Score=81.99 Aligned_cols=42 Identities=38% Similarity=0.655 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++||++|..|+++|++|+|||+.+.+||.++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999865
No 97
>PRK07121 hypothetical protein; Validated
Probab=98.26 E-value=2e-06 Score=81.57 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+|.+||+||++++++|.+|+|+||.+..||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 358999999999999999999999999999999999888643
No 98
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.26 E-value=9.6e-07 Score=80.41 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
||+|||||++||++|+.|+++|++|+||||.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 6999999999999999999999999999999764
No 99
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.25 E-value=1e-06 Score=82.45 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=41.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~ 72 (260)
...||+|||+|++|+.+|..|++.|++|+++|+++..||++++.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 34899999999999999999999999999999999999999975
No 100
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.25 E-value=1.1e-06 Score=81.11 Aligned_cols=36 Identities=31% Similarity=0.687 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.||+|||||+.|+++|++|+++|++|+|+||++.+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 499999999999999999999999999999998654
No 101
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.25 E-value=7.9e-07 Score=82.09 Aligned_cols=44 Identities=36% Similarity=0.622 Sum_probs=40.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
...++|+|||||++||+||..|++.|++|.++||++.+||++..
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 44578999999999999999999999999999999999999764
No 102
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.24 E-value=1.1e-06 Score=82.25 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|++||.+++++|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 37999999999999999999999999999998 57999976
No 103
>PRK07045 putative monooxygenase; Reviewed
Probab=98.24 E-value=1.1e-06 Score=80.49 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+.+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3479999999999999999999999999999998765
No 104
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.24 E-value=1.7e-06 Score=81.40 Aligned_cols=42 Identities=43% Similarity=0.653 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++||++|..|+++|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 457999999999999999999999999999999999999765
No 105
>PRK09126 hypothetical protein; Provisional
Probab=98.24 E-value=1.3e-06 Score=80.06 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...+|+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 357999999999999999999999999999999865
No 106
>PRK06116 glutathione reductase; Validated
Probab=98.23 E-value=1.1e-06 Score=82.25 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|+++|..|+++|++|+|+|+. .+||.|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 479999999999999999999999999999985 7999875
No 107
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.23 E-value=6.1e-06 Score=76.17 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccCcccc
Q 024958 18 LFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSFIGG 67 (260)
Q Consensus 18 ~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~-G~-~v~v~E~~~~~GG 67 (260)
|.|.+-........||+|||||+.|+++|++|+++ |. +|+|+|+....+|
T Consensus 18 ~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 18 WKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 45555444445568999999999999999999995 95 9999999864444
No 108
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.6e-06 Score=81.92 Aligned_cols=41 Identities=39% Similarity=0.456 Sum_probs=38.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|+++|.++++.|++|+|+|+.+.+||.|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 48999999999999999999999999999999888999875
No 109
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.22 E-value=1.6e-06 Score=79.63 Aligned_cols=34 Identities=32% Similarity=0.638 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4699999999999999999999999999999874
No 110
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.21 E-value=1.5e-06 Score=81.01 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=33.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999999865
No 111
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.21 E-value=1.7e-06 Score=78.96 Aligned_cols=40 Identities=38% Similarity=0.625 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..++|+|||||++|+++|++|+++|.+|+++|+....+|.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~ 42 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcc
Confidence 4689999999999999999999999999999998876543
No 112
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.20 E-value=2.5e-06 Score=80.48 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=39.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||+|++||++|..|+++|++|+|||+.+.+||.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999875
No 113
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.6e-06 Score=81.78 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=37.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 479999999999999999999999999999985 7899986
No 114
>PRK08013 oxidoreductase; Provisional
Probab=98.20 E-value=1.7e-06 Score=79.81 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 347999999999999999999999999999999875
No 115
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.19 E-value=2e-06 Score=78.29 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
...||+|||||+.|+++|+.|+++|++|+|+|+....+
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~ 39 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPH 39 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence 35799999999999999999999999999999987553
No 116
>PRK07538 hypothetical protein; Provisional
Probab=98.19 E-value=1.8e-06 Score=79.98 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+||+|||||++||++|+.|+++|++|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999998754
No 117
>PRK06847 hypothetical protein; Provisional
Probab=98.18 E-value=2e-06 Score=78.36 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||||++||++|+.|++.|++|+|||+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 36899999999999999999999999999999875
No 118
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.18 E-value=2e-06 Score=79.05 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...+|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 457999999999999999999999999999999864
No 119
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=5.3e-07 Score=80.16 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..+|-.|||||-+|+++|++.++.|.++.++|..-.+||.|--
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 3689999999999999999999999999999998899999863
No 120
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.17 E-value=2.2e-06 Score=79.16 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 48999999999999999999999999999998654
No 121
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.17 E-value=1.9e-06 Score=78.92 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESR 62 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~ 62 (260)
|+..+|+|||||++|+++|+.|+++ |++|+|||+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4568999999999999999999998 9999999995
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.17 E-value=2.1e-06 Score=78.64 Aligned_cols=37 Identities=38% Similarity=0.614 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
||+|||||++|+++|+.|++.|++|+|+|+++.+|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 6999999999999999999999999999999877764
No 123
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.16 E-value=2.3e-06 Score=79.24 Aligned_cols=38 Identities=37% Similarity=0.655 Sum_probs=34.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
||+|||+|.+||+||+.++++|.+|+|+||.+..||..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccccc
Confidence 79999999999999999999999999999999999954
No 124
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.16 E-value=2.2e-06 Score=78.92 Aligned_cols=35 Identities=40% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..+|+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 36899999999999999999999999999999874
No 125
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.6e-06 Score=80.30 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||||++|++||.+|++.|++|+|+|++ .+||.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 479999999999999999999999999999984 7899875
No 126
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.15 E-value=7.3e-08 Score=87.27 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhh
Q 024958 163 DEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE 229 (260)
Q Consensus 163 ~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~ 229 (260)
..++-++...|.+|+........+.++|+ ++|....+-...+++|+|||+|.||++|+..|.+...
T Consensus 149 r~vVla~G~~P~iP~~~~~~~~~~~v~Hs-s~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~ 214 (341)
T PF13434_consen 149 RNVVLATGGQPRIPEWFQDLPGSPRVFHS-SEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGP 214 (341)
T ss_dssp SEEEE----EE---GGGGGGTT-TTEEEG-GGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred CeEEECcCCCCCCCcchhhcCCCCCEEEe-hHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence 34555666788888533221124678998 6665443334568999999999999999999998754
No 127
>PRK06184 hypothetical protein; Provisional
Probab=98.15 E-value=2.6e-06 Score=81.01 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
...+|+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999998665
No 128
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.15 E-value=2.1e-06 Score=78.40 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~ 65 (260)
||+|||||++|+++|+.|+++| ++|+|+|+.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 6999999999999999999999 999999998643
No 129
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.15 E-value=2.4e-06 Score=78.62 Aligned_cols=38 Identities=32% Similarity=0.548 Sum_probs=34.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~ 68 (260)
.||+|||||++|+++|+.|+++ |++|+|+||...+|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~ 42 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH 42 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccc
Confidence 6999999999999999999999 9999999999876553
No 130
>PRK07588 hypothetical protein; Provisional
Probab=98.15 E-value=2.4e-06 Score=78.38 Aligned_cols=35 Identities=43% Similarity=0.521 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
++|+|||||++||++|+.|+++|++|+|||+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 48999999999999999999999999999998654
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.15 E-value=2.5e-06 Score=78.04 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
..+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 468999999999999999999999999999998775
No 132
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.14 E-value=2.7e-06 Score=77.12 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
..++|+|||||++||-||..++++|++|+|||+.+.+|-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccc
Confidence 468999999999999999999999999999999999873
No 133
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.14 E-value=2.8e-06 Score=78.39 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 78999999999999999999999999999998764
No 134
>PLN02697 lycopene epsilon cyclase
Probab=98.14 E-value=5e-06 Score=79.41 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
......||+|||||++||++|+.|++.|++|+|+|+....
T Consensus 104 ~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 104 IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 3455689999999999999999999999999999986443
No 135
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.14 E-value=4.2e-06 Score=80.75 Aligned_cols=43 Identities=40% Similarity=0.635 Sum_probs=39.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+.++|+|||||++||++|+.|++.|++|+|+|+.+.+||.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999999999775
No 136
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.13 E-value=4e-06 Score=79.90 Aligned_cols=41 Identities=41% Similarity=0.587 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
...||+|||+|.+|++||+.++++|.+|+|+||.+.+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 35799999999999999999999999999999999998863
No 137
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.13 E-value=4.2e-06 Score=82.29 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
..+|+|||||++|+++|+.|+++|++|+|+|+...+|
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~ 296 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence 3699999999999999999999999999999986554
No 138
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.13 E-value=2.7e-06 Score=78.74 Aligned_cols=36 Identities=39% Similarity=0.723 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~G 66 (260)
++|+|||||++||++|+.|+++| ++|+||||.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 47999999999999999999998 5999999987764
No 139
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.13 E-value=2.9e-06 Score=77.70 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
..||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 468999999999999999999999999999998654
No 140
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.13 E-value=3.1e-06 Score=76.90 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.||+|||||++|+++|++|+++|++|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 48999999999999999999999999999998653
No 141
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.12 E-value=2.5e-06 Score=78.69 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+|+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 689999999999999999999999999999986
No 142
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.12 E-value=4.7e-06 Score=78.42 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~ 64 (260)
...||+|||||++|+++|++|+++ |.+|+|+|++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 347999999999999999999998 899999999754
No 143
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.12 E-value=2.8e-06 Score=78.08 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999997
No 144
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.11 E-value=4.3e-06 Score=76.87 Aligned_cols=57 Identities=39% Similarity=0.735 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCcEEEEcccCcccccceeeecCCCc--EeeeceeEEcCcchHHHHHHHHH
Q 024958 44 STAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGN--HIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 44 ~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~--~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
+||+.|+++|++|+|||+++++||++.++. .+|. .+|.|+|++.+.++++.++++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~l 59 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRI 59 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHh
Confidence 489999999999999999999999999886 4543 49999999998889888887775
No 145
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.10 E-value=3.9e-06 Score=85.87 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=39.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
.+||+|||||++||+||..+++.|++|+|+|+++.+||.++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 479999999999999999999999999999999999998863
No 146
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.10 E-value=3.4e-06 Score=78.71 Aligned_cols=38 Identities=34% Similarity=0.632 Sum_probs=35.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKV 69 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~ 69 (260)
||+|||+|.+|++||+.++++| .+|+|+||.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 6999999999999999999999 9999999999988864
No 147
>PRK05868 hypothetical protein; Validated
Probab=98.09 E-value=3.9e-06 Score=76.85 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
++|+|||||++||++|+.|+++|++|+|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999998765
No 148
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.09 E-value=3.7e-06 Score=77.64 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
++|+|||||++|+++|++|+++|++|+|+|+...+|.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~ 37 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL 37 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence 4899999999999999999999999999999865543
No 149
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.08 E-value=4e-06 Score=77.16 Aligned_cols=35 Identities=40% Similarity=0.438 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 46899999999999999999999999999999874
No 150
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.08 E-value=4e-06 Score=77.08 Aligned_cols=33 Identities=42% Similarity=0.645 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..+|+|||||++||++|..|++.|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 478999999999999999999999999999998
No 151
>PLN02661 Putative thiazole synthesis
Probab=98.08 E-value=4e-06 Score=75.77 Aligned_cols=39 Identities=41% Similarity=0.519 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~ 68 (260)
..||+|||||++|+++|+.|+++ |++|+|+|++..+||.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 46999999999999999999986 8999999999998774
No 152
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.08 E-value=4.7e-06 Score=79.47 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||||+.|+++|+.|+++|++|+|+||++..+|..
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4899999999999999999999999999999987766654
No 153
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.06 E-value=7.4e-06 Score=77.67 Aligned_cols=42 Identities=36% Similarity=0.578 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||||++|+++|..|+++|++|+|||+.+.+||..+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999999765
No 154
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.05 E-value=5.6e-07 Score=82.38 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~ 64 (260)
++|+|||||++|+++|..|++.+ .+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 58999999999999999998864 58999998764
No 155
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.05 E-value=4.7e-06 Score=76.93 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..+|+|||||++||++|..|+++|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999996
No 156
>PRK08244 hypothetical protein; Provisional
Probab=98.05 E-value=5.3e-06 Score=78.65 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
..+|+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 368999999999999999999999999999998654
No 157
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.04 E-value=5.9e-06 Score=78.64 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||||+.|+++|+.|+++|++|+|+||++..+|.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 479999999999999999999999999999999766554
No 158
>PRK06185 hypothetical protein; Provisional
Probab=98.04 E-value=5.6e-06 Score=76.33 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 347999999999999999999999999999999754
No 159
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.04 E-value=6.2e-06 Score=77.63 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=35.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc--cccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~--~GG~ 68 (260)
..||+|||+|.+||+||+.++++|.+|+|+||.+. .||.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 47999999999999999999999999999999974 6765
No 160
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.03 E-value=5.1e-06 Score=76.01 Aligned_cols=33 Identities=39% Similarity=0.694 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 589999999999999999999999999999863
No 161
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.03 E-value=2.8e-07 Score=92.52 Aligned_cols=38 Identities=29% Similarity=0.586 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIG 66 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~G 66 (260)
++++|+|||+|++|+.+|..|+++ +++|+||++.+.++
T Consensus 2 ~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 2 SKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 356999999999999999999864 47999999998764
No 162
>PRK06126 hypothetical protein; Provisional
Probab=98.03 E-value=6.4e-06 Score=79.08 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..+|+|||||++||++|+.|+++|++|+|||+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999999864
No 163
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.03 E-value=8.9e-06 Score=73.85 Aligned_cols=42 Identities=43% Similarity=0.482 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..++|+|||+|++|+.+|..|++.|++|+++|+.+.+||.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 347999999999999999999999999999999999999765
No 164
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.02 E-value=9.6e-06 Score=77.95 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
...+|+|||||++||++|+.|++.|++|+|+||.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999999765
No 165
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.02 E-value=5.6e-06 Score=75.90 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4799999999999999999999999999999975
No 166
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.01 E-value=6.3e-06 Score=80.46 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+..+|+|||||++||++|..|+++|++|+||||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999975
No 167
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=9.3e-07 Score=78.67 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=36.4
Q ss_pred ccccccchhHHHHhHHHHHHHHHHhhhhHHH--HHHHHHHHHHHhh
Q 024958 203 KQDYIDSMEGPTLSDRQASAYICNAGEELVA--LRKQLAAFESQEQ 246 (260)
Q Consensus 203 ~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~--~~~~~~~~~~~~~ 246 (260)
++||+|.|+|.||||+++|.+|+..++||++ |-.+.|+-.+-|.
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~ 397 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQD 397 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHH
Confidence 5599999999999999999999999999987 4566666555443
No 168
>PRK06834 hypothetical protein; Provisional
Probab=98.01 E-value=7.3e-06 Score=77.78 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999999999999864
No 169
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=7.1e-06 Score=77.52 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc------cCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES------RSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~------~~~~GG~~~ 70 (260)
.+||+|||||++|++||.++++.|.+|+|+|+ ...+||.|.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 47999999999999999999999999999998 467888875
No 170
>PLN02487 zeta-carotene desaturase
Probab=98.00 E-value=1.4e-05 Score=76.94 Aligned_cols=106 Identities=74% Similarity=1.210 Sum_probs=83.6
Q ss_pred chhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH-----------------------hhhccCCCCCCCCCCCCCCC
Q 024958 135 PEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR-----------------------QSLYRGGPGKVPLRTDQKTP 191 (260)
Q Consensus 135 ~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~-----------------------~p~~p~~pG~~~F~G~~~hs 191 (260)
+.+|+..+.++.+..++...+.+....++++++.+.. ++.+...||++.+++.+.++
T Consensus 437 ~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~ 516 (569)
T PLN02487 437 PEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTP 516 (569)
T ss_pred HHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCC
Confidence 4444332333444455555556666777777777654 55566779999898889999
Q ss_pred CccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Q 024958 192 VKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAA 240 (260)
Q Consensus 192 ~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~~~~~~~ 240 (260)
+.+++.+++|..++|+..++|+..||.++|..|.+.+..+..+|++.+.
T Consensus 517 ~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~~~~~ 565 (569)
T PLN02487 517 ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAA 565 (569)
T ss_pred CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999988764
No 171
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.00 E-value=1.1e-05 Score=77.54 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=35.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
+...+|+|||||++||++|..|+++|++|+||||.+.++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 345899999999999999999999999999999997654
No 172
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.00 E-value=8e-06 Score=78.56 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||||+.|+++|+.|+++|++|+|+|+++..+|.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~Ga 44 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA 44 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCc
Confidence 479999999999999999999999999999997655443
No 173
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.99 E-value=8.9e-06 Score=77.65 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+| +||+||++++++|.+|+|+||.+..||..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 5799999999 99999999999999999999999888864
No 174
>PLN02985 squalene monooxygenase
Probab=97.98 E-value=9.2e-06 Score=77.57 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
....||+|||||++|+++|+.|+++|++|+|+||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 345799999999999999999999999999999974
No 175
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.98 E-value=7.2e-06 Score=75.38 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~ 64 (260)
.||+|||||++||++|..|+++| ++|+|+|+++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 68999999999999999999996 99999999864
No 176
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.97 E-value=8.5e-06 Score=81.58 Aligned_cols=43 Identities=40% Similarity=0.615 Sum_probs=40.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..++|+|||.|++||+||-.|-+.||.|+||||.+++||...+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 3589999999999999999999999999999999999999875
No 177
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.97 E-value=8.9e-06 Score=78.69 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..||+|||+|.+||+||+.++++|.+|+|+||.+..||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 57999999999999999999999999999999999998754
No 178
>PRK07190 hypothetical protein; Provisional
Probab=97.97 E-value=9.6e-06 Score=76.94 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
..+|+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 479999999999999999999999999999998765
No 179
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.97 E-value=8.5e-06 Score=77.54 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC--------cccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~--------~~GG~~~ 70 (260)
.+||+|||||++|++||..++++|++|+|+|+.. .+||.|-
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 3799999999999999999999999999999732 4899874
No 180
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.97 E-value=8.8e-06 Score=74.56 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~ 68 (260)
||+|||||++||++|++|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 699999999999999999987 9999999999888873
No 181
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.93 E-value=9.6e-06 Score=75.80 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~----~G~~v~v~E~~~ 63 (260)
.||+|||||++|+++|+.|++ +|++|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 489999999999999999999 899999999943
No 182
>PRK13984 putative oxidoreductase; Provisional
Probab=97.92 E-value=1.6e-05 Score=77.31 Aligned_cols=43 Identities=47% Similarity=0.568 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...++|+|||+|++|+++|..|+++|++|+|||+.+.+||.++
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3457899999999999999999999999999999999999765
No 183
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.92 E-value=6.6e-06 Score=76.11 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=34.3
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 34 AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 34 ~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
+|||||++||+||+.|+++|++|+|+||++.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 5999999999999999999999999999999987653
No 184
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.92 E-value=1.2e-05 Score=77.27 Aligned_cols=40 Identities=38% Similarity=0.679 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC--cccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--FIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~--~~GG~~ 69 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||.+ .+||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 4799999999999999999999999999999999 788864
No 185
>PRK11445 putative oxidoreductase; Provisional
Probab=97.92 E-value=1.2e-05 Score=73.08 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.||+|||||++|+++|+.|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 6899999999999999999999 99999999874
No 186
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.3e-05 Score=75.42 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=35.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
++|+|||+|++|+++|.++++.|++|+|+|+. .+||.|-
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 38999999999999999999999999999986 5788875
No 187
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=72.96 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
..+|+|||||++||++|..|.++|++|+|||+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999997665
No 188
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.89 E-value=1.6e-05 Score=65.59 Aligned_cols=36 Identities=42% Similarity=0.467 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
||+|||||++|+++|..|++.|++++|+|+.+..+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~ 36 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPY 36 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 699999999999999999999999999998775443
No 189
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.89 E-value=2e-05 Score=76.41 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+||+||+.++++|.+|+|+||.+..||..
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 5799999999999999999999999999999999988853
No 190
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.89 E-value=1.3e-05 Score=75.99 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G 66 (260)
.||+|||||++|+++|+.|++. |.+|+||||.+.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 4899999999999999999997 99999999987554
No 191
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.89 E-value=1.6e-05 Score=73.63 Aligned_cols=35 Identities=43% Similarity=0.647 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
++|+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 68999999999999999999999999999976544
No 192
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=1.6e-05 Score=77.15 Aligned_cols=40 Identities=28% Similarity=0.503 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.+.||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3469999999999999999999999999999999877654
No 193
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.88 E-value=9e-06 Score=74.65 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=52.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEE
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~ 87 (260)
.+..|++|||+|..||++|..|++.|.+|.++|++.++||...+....+|+.++.++.++
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~ 71 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLL 71 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHH
Confidence 677999999999999999999999999999999998899887776667888887766544
No 194
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.88 E-value=1.7e-05 Score=77.58 Aligned_cols=40 Identities=28% Similarity=0.531 Sum_probs=36.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||||+.|.++|+.|+++|++|+|+|+++..+|..
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS 110 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence 4899999999999999999999999999999997666653
No 195
>PTZ00367 squalene epoxidase; Provisional
Probab=97.88 E-value=7.6e-06 Score=78.90 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4799999999999999999999999999999975
No 196
>PRK12839 hypothetical protein; Provisional
Probab=97.88 E-value=2e-05 Score=76.26 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+|.+|+++|+.++++|.+|+|+||...+||...
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 357999999999999999999999999999999999999864
No 197
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.87 E-value=2.9e-05 Score=76.07 Aligned_cols=42 Identities=31% Similarity=0.604 Sum_probs=37.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-Cccccccee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVGS 71 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~ 71 (260)
.+||+|||+|++|.++|.++++.|++|.|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 469999999999999999999999999999974 479999763
No 198
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.87 E-value=1.2e-06 Score=87.72 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccc------cccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958 161 PNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY------TKQDYIDSMEGPTLSDRQASAYICNAGEELVA 233 (260)
Q Consensus 161 ~~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y------~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~ 233 (260)
..+.++-+....|..|++||.+. .+ + + .|+...+. ...++.++|+|.|.+|.++|.+|.+.+.+|++
T Consensus 96 ~yD~LVlATGs~p~~p~ipG~~~-~~-v-~---~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv 168 (785)
T TIGR02374 96 SYDKLILATGSYPFILPIPGADK-KG-V-Y---VFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSV 168 (785)
T ss_pred eCCEEEECCCCCcCCCCCCCCCC-CC-E-E---EeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 44555666666788888999763 22 1 1 12222211 12467889999999999999999988766554
No 199
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.87 E-value=1.8e-05 Score=76.36 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=37.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+|+++|+.++++|.+|+|+||.+..||..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5799999999999999999999999999999999888874
No 200
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.86 E-value=2.3e-05 Score=75.68 Aligned_cols=41 Identities=29% Similarity=0.601 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+| +|++||...++.|.+|+|+||.+.+||...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 36899999999 899999999999999999999999999765
No 201
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.85 E-value=2.1e-05 Score=73.76 Aligned_cols=43 Identities=30% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 71 (260)
..+|++|||+|++|..+|.++++.|.+|.|+|+...+||.|-.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 3589999999999999999999999999999999899999863
No 202
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.84 E-value=3.4e-05 Score=74.78 Aligned_cols=42 Identities=36% Similarity=0.560 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+|.+|+++|+.++++|++|+|+||.+.+||...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 357999999999999999999999999999999999999865
No 203
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.84 E-value=3.1e-05 Score=74.47 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
...||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 3579999999999999999999999999999999987764
No 204
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.83 E-value=2.1e-05 Score=74.56 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccc--------Ccccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESR--------SFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~--------~~~GG~~~ 70 (260)
.+||+|||+|++|..+|.++++. |.+|.|+|+. +.+||.|-
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 47999999999999999999997 9999999984 57999876
No 205
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.82 E-value=3.1e-05 Score=80.59 Aligned_cols=43 Identities=33% Similarity=0.538 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
....||+|||+|.+|++||+..++.|.+|+|+||.+..||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4458999999999999999999999999999999999998743
No 206
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.82 E-value=3.6e-05 Score=75.37 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~ 65 (260)
..+|+|||||++||++|+.|++. |++|+|+|+.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 57999999999999999999994 9999999998643
No 207
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.82 E-value=2.4e-05 Score=75.48 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=37.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..||+|||+|.+|+++|+.++++|++|+|+||.+.+||...
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 57999999999999999999999999999999999888643
No 208
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.82 E-value=2.3e-05 Score=72.91 Aligned_cols=35 Identities=40% Similarity=0.490 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
+|+|||||++|+.+|+.|+++|++|+|||+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 79999999999999999999999999999876643
No 209
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.81 E-value=2.2e-05 Score=74.61 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG 67 (260)
...||+|||||+.|+++|+.|++. |.+|+|+||.+.+|+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~ 44 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVAL 44 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhh
Confidence 347999999999999999999985 789999999877653
No 210
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=3.5e-05 Score=75.52 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
..||+|||+|.|||+||+.+++.|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4699999999999999999999999999999987765
No 211
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.80 E-value=2.1e-05 Score=72.15 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHH--HHCCCcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L--~~~G~~v~v~E~~~~~ 65 (260)
||+|||||+|||++|++| ++.|++|+|+|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999 7789999999998776
No 212
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.80 E-value=2.4e-05 Score=75.58 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=34.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
||+|||+|.+||+||+.++++|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 6999999999999999999999999999999876654
No 213
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.80 E-value=3.8e-05 Score=74.46 Aligned_cols=42 Identities=33% Similarity=0.480 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+|.+|+++|+.++++|++|+|+||++.+||...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 458999999999999999999999999999999998898754
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.80 E-value=4.4e-05 Score=54.14 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=33.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
+|+|||||..|+-.|..|++.|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999998875
No 215
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.78 E-value=2.9e-05 Score=75.01 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-Ccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGG 67 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~~~GG 67 (260)
...||+|||||+||+.||+.+++.|++|.++|++ +.+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 3589999999999999999999999999999998 35654
No 216
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=2.9e-05 Score=75.93 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.|||+||+.+++.|.+|+|+||....||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 479999999999999999999999999999999876553
No 217
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.77 E-value=3.2e-05 Score=75.44 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 579999999999999999999999999999999887764
No 218
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.77 E-value=2.7e-05 Score=77.84 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~ 64 (260)
++|+|||||++||++|+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999876
No 219
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.76 E-value=3.2e-05 Score=72.91 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=36.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
++|+|||+|++|+.+|..++++|++|+++|+.. +||.|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 589999999999999999999999999999874 899886
No 220
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.75 E-value=5.1e-05 Score=74.26 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 468999999999999999999999999999999877764
No 221
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.74 E-value=4.2e-05 Score=72.71 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEcccCccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ-G-HEVDIYESRSFIG 66 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~-G-~~v~v~E~~~~~G 66 (260)
...||+|||||+.|+++|+.|++. + .+|+|+||.+.+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 358999999999999999999996 3 6999999987554
No 222
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=3.8e-05 Score=74.25 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999999776664
No 223
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=3.9e-05 Score=74.49 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||....+|..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 4799999999999999999999999999999987766643
No 224
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.73 E-value=3.9e-05 Score=72.41 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+||+|||+|.+||+||+.++++|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6899999999999999999999999999999864
No 225
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.73 E-value=3.3e-05 Score=70.50 Aligned_cols=42 Identities=36% Similarity=0.516 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCccccccee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGS 71 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~~~ 71 (260)
..||+|||||++||+||++|.+. -++|.|+||...+||..-+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 47999999999999999999874 3589999999999997543
No 226
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.72 E-value=4e-05 Score=73.38 Aligned_cols=39 Identities=26% Similarity=0.184 Sum_probs=36.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
+||+|||+|++|+++|+.|+++|++|+++|+....||.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 489999999999999999999999999999999998765
No 227
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.70 E-value=4.2e-05 Score=74.06 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~ 68 (260)
...||+|||+|.+||+||+.+++.| .+|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 3469999999999999999999874 899999998876653
No 228
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.68 E-value=4.8e-05 Score=73.82 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=35.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.|||+||+.+++.|.+|+|+||....||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999999777664
No 229
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.68 E-value=5e-05 Score=70.47 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=37.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||||+.|+++|+.|++.+ ++|+|+||.+.+|.-.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS 45 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS 45 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence 3579999999999999999999998 99999999999985544
No 230
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.68 E-value=5.5e-05 Score=72.93 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
....||+|||+|.|||+||+.+. +|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34579999999999999999986 59999999999987775
No 231
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=5.3e-05 Score=73.70 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.+||+||+.+++.|.+|+|+||....+|.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 479999999999999999999999999999998766654
No 232
>PLN02815 L-aspartate oxidase
Probab=97.66 E-value=7.3e-05 Score=72.58 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
...||+|||+|.+||+||+.+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3479999999999999999999999 99999999988875
No 233
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.66 E-value=5.1e-05 Score=70.96 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
..||+|||+|.+||+||..+. +|.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 369999999999999999974 79999999999988875
No 234
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=5.4e-05 Score=73.32 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+||+||+.+++.| .+|+|+||....||..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 368999999999999999999998 8999999998877643
No 235
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.65 E-value=5.9e-05 Score=71.61 Aligned_cols=37 Identities=38% Similarity=0.611 Sum_probs=34.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.||+|||+|.+||+||+.+++.|. |+|+||.+..||.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 589999999999999999999998 9999999877765
No 236
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.64 E-value=4.2e-05 Score=68.05 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..+|+|||||+-|+++|+.|+++|.+++++|+.+-+--+.+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GS 47 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGS 47 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCc
Confidence 46899999999999999999999999999999887654443
No 237
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.62 E-value=7.4e-05 Score=70.93 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G 66 (260)
....||+|||||++|+++|+.|++. |.+|+|+||.+.+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 3456999999999999999999998 89999999966666
No 238
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.62 E-value=5.1e-05 Score=66.88 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~G 66 (260)
+|++|||+|.+|..+|.+|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 48999999999999999999997 6999999987654
No 239
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.62 E-value=6.7e-05 Score=73.75 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
..||+|||+|.+||+||+.++++|.+|+|+||.+..+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 47999999999999999999999999999999877654
No 240
>PRK06996 hypothetical protein; Provisional
Probab=97.61 E-value=7e-05 Score=69.07 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~ 63 (260)
..+|+|||||++|+++|+.|++.| ++|+|+|+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 479999999999999999999987 4799999975
No 241
>PRK09897 hypothetical protein; Provisional
Probab=97.61 E-value=7.9e-05 Score=71.35 Aligned_cols=38 Identities=39% Similarity=0.594 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccc-cc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG-GK 68 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~G-G~ 68 (260)
++|+|||||++|+++|.+|.+.+ ++|+|||++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 58999999999999999998865 5899999999888 44
No 242
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.60 E-value=6.9e-05 Score=73.06 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G 66 (260)
..||+|||+|.|||+||+.+++. |.+|+|+||.+..+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 46999999999999999999998 99999999987643
No 243
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.59 E-value=0.00013 Score=68.19 Aligned_cols=71 Identities=27% Similarity=0.409 Sum_probs=52.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~~ 101 (260)
.+++-|||+|+|+|+||.+|.+.| .+++|||+.+.+||.+....+ ..|+.+.-|... ...|..++++++.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~~~eclwdLls~I 77 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EFHYECLWDLLSSI 77 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cchhHHHHHHHHhC
Confidence 367889999999999999999974 599999999999999875433 345544444333 45566666665544
No 244
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.58 E-value=8.2e-05 Score=71.05 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.|||+||..+++ |.+|+|+||.+..||..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 4699999999999999999976 99999999999877753
No 245
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=8.9e-05 Score=71.32 Aligned_cols=39 Identities=36% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-cccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~ 68 (260)
...||+|||+|.|||+||+.+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 347999999999999999999 89999999999865 4554
No 246
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.57 E-value=6.6e-05 Score=67.85 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||+|++|-.||...++.|++..|+|++..+||.+-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 468999999999999999999999999999999999999975
No 247
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.54 E-value=0.0001 Score=67.65 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEE-cccCccccc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIY-ESRSFIGGK 68 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~-E~~~~~GG~ 68 (260)
||+|||||+||..||+.+++.|.+|.++ ++.+.+|..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc
Confidence 7999999999999999999999999999 666666543
No 248
>PRK08275 putative oxidoreductase; Provisional
Probab=97.53 E-value=9.9e-05 Score=71.17 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~ 65 (260)
..||+|||+|.|||+||+.++++ |.+|+|+||.+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 47999999999999999999987 6899999999864
No 249
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.53 E-value=0.00012 Score=69.48 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
...||+|||||+.|+.+|..++.+|++|+++|+++...|+..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 568999999999999999999999999999999999988754
No 250
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.52 E-value=9e-05 Score=72.16 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
|+|||+|.|||+||+.+++.|.+|+|+||.+.+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6899999999999999999999999999998554
No 251
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.51 E-value=0.00011 Score=71.36 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+||+||+.+++. |.+|+|+||....||..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 46999999999999999999987 47999999998777643
No 252
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.50 E-value=0.00015 Score=69.64 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
...||+|||+|.+||+||+.+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 347999999999999999999886 899999999887774
No 253
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.48 E-value=0.00012 Score=70.92 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~ 69 (260)
..||+|||+|.+||+||+.++++ |.+|+|+||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 36899999999999999999987 58999999998877754
No 254
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.47 E-value=0.00013 Score=65.94 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
....||+|||||++|-+.|+.|++.|.+|.|+||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34579999999999999999999999999999995
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.44 E-value=0.00019 Score=66.28 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~ 65 (260)
..++|+|||||++|+++|..|+++|+ +|+++++.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 34689999999999999999999987 79999988654
No 256
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.41 E-value=0.00018 Score=70.14 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~----~~G~~v~v~E~~~~~ 65 (260)
||+|||+|.|||+||+.++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 6999999999999999998 679999999998753
No 257
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.41 E-value=0.00017 Score=67.28 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~G 66 (260)
++|+|||||++|+++|..|++.+ .+|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999875 5999999998764
No 258
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.39 E-value=0.0002 Score=66.71 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+||+|||+|++|+++|+.|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999864
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.37 E-value=0.00023 Score=66.66 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G 66 (260)
++|+|||||++|+++|..|++. +++|+|+|+++..+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999887 57999999988654
No 260
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.37 E-value=0.00022 Score=69.27 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
..||+|||+|.+||+||+.+++. .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 36899999999999999999876 89999999876665
No 261
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.37 E-value=0.00023 Score=68.56 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.+.||+|||+|.|||.||..++++|.+|.|+||....+|.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 4579999999999999999999999999999999887754
No 262
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.34 E-value=0.00029 Score=62.85 Aligned_cols=41 Identities=39% Similarity=0.645 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc--Ccccccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR--SFIGGKV 69 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~--~~~GG~~ 69 (260)
...+|+|||||++||.||..|+.+|++|+|+|+. ..+||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 3578999999999999999999999999999876 4567763
No 263
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.30 E-value=0.00026 Score=56.80 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=30.1
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCcEEEEcccCcc-cccce
Q 024958 34 AIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFI-GGKVG 70 (260)
Q Consensus 34 ~VIGaG~aGl~aA~~L~~~-----G~~v~v~E~~~~~-GG~~~ 70 (260)
+|||+|++|++++.+|.++ ..+|+|||+++.- |+.|+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~ 43 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYR 43 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCC
Confidence 6999999999999999988 4699999996652 23444
No 264
>PRK02106 choline dehydrogenase; Validated
Probab=97.28 E-value=0.00032 Score=67.70 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~ 63 (260)
..|++|||+|.+|+.+|.+|++ .|++|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4799999999999999999999 799999999985
No 265
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.24 E-value=0.00042 Score=64.56 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...++++|+|||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 456678999999999999999999877899999998764
No 266
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00041 Score=61.74 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..+|+|||+|++||+||.+|+++|+++.|+-+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 479999999999999999999999999999764
No 267
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.22 E-value=0.00016 Score=63.15 Aligned_cols=41 Identities=34% Similarity=0.667 Sum_probs=37.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEcccCccccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGK 68 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G------~~v~v~E~~~~~GG~ 68 (260)
..+++|+|+|+|+.|.++||.|++++ ++++|||+....||.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 34589999999999999999999998 799999999888875
No 268
>PRK07846 mycothione reductase; Reviewed
Probab=97.18 E-value=0.00048 Score=64.77 Aligned_cols=67 Identities=4% Similarity=-0.005 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958 162 NDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 234 (260)
Q Consensus 162 ~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~ 234 (260)
.+.++-+....|.+|++||.+. ...++..+. ..+...++.++|+|+|.+|.++|..+.+.+.+|+.+
T Consensus 129 ~d~lViATGs~p~~p~i~g~~~---~~~~~~~~~---~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 195 (451)
T PRK07846 129 ADQVVIAAGSRPVIPPVIADSG---VRYHTSDTI---MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVV 195 (451)
T ss_pred eCEEEEcCCCCCCCCCCCCcCC---ccEEchHHH---hhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 3455555566888888888642 112221221 122233678899999999999999999877665543
No 269
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.16 E-value=0.00052 Score=64.54 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.+||+|||+|++|..+|. +..|.+|.++|+ +.+||.|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeee
Confidence 479999999999998865 457999999998 56899986
No 270
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.13 E-value=0.00036 Score=65.10 Aligned_cols=35 Identities=37% Similarity=0.607 Sum_probs=31.4
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEcccCc--ccccc
Q 024958 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKV 69 (260)
Q Consensus 35 VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~--~GG~~ 69 (260)
|||+|.+|++||+.++++|.+|+|+||.+. .||..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 799999999999999999999999999884 46653
No 271
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.13 E-value=0.00068 Score=65.58 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
.||+|||||++|+.+|..+++.|.+|+++|+....+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g 37 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG 37 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 4899999999999999999999999999998754433
No 272
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.13 E-value=0.0006 Score=62.22 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=38.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 69 (260)
.++|+|||+|..||-+|..|+++|++|+++|+.+.+||+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 4799999999999999999999999999999999999975
No 273
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.00049 Score=65.80 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-cccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK 68 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~ 68 (260)
...||+|||+|.+||+||+.++ |.+|+|+||... .||.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~ 46 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS 46 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence 3479999999999999999986 579999999987 3443
No 274
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.10 E-value=0.0006 Score=69.42 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
...||+|||+|.+||+||+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 347999999999999999999999999999999875
No 275
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.06 E-value=0.00065 Score=60.38 Aligned_cols=39 Identities=36% Similarity=0.610 Sum_probs=36.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
.|+|||+|++||+|+..+...|-.|+++|++..+||+.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999888999999999999854
No 276
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.04 E-value=0.00054 Score=65.72 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF 64 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~ 64 (260)
|++|||+|.+|+.+|.+|+++| ++|+|+|+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999998 79999999853
No 277
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.00017 Score=65.79 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~~ 70 (260)
...|++.||-|++-|+.|+.|...+ +++..|||.+.. +|+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WH 44 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWH 44 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcC
Confidence 4579999999999999999998875 789999998765 455
No 278
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.02 E-value=0.00084 Score=62.30 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+||+|||+|++|+++|+.|.+.|++|.|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 489999999999999999999999999999875
No 279
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.0019 Score=60.22 Aligned_cols=43 Identities=35% Similarity=0.543 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccccceee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVGSF 72 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG~~~~~ 72 (260)
.++|+|||+|++|+.+|.+|.+.- ..+.|||+.+..|+-..+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence 368999999999999999999852 1399999999999877643
No 280
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.92 E-value=0.0009 Score=63.02 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSF 64 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~ 64 (260)
||+|||+|.+|..+|..|++.+ ++|+|+|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 6999999999999999999998 89999999753
No 281
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0083 Score=58.04 Aligned_cols=72 Identities=25% Similarity=0.262 Sum_probs=46.4
Q ss_pred CCcccccccCCCC-CCCC-------C-CCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccc-Ccccccc
Q 024958 1 MGSSLLLVSGSTE-DPKC-------L-FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESR-SFIGGKV 69 (260)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~-------~-~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~-~~~GG~~ 69 (260)
||-++++-+++++ .|.+ + .+.+++.+-....+|+|||+|.+|.++||+|+++|.+ ..++|+. -..|+.|
T Consensus 1 ~g~~nl~~~a~~~~~~~~v~~~qg~~~~~~s~s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttw 80 (856)
T KOG2844|consen 1 MGRCNLLSAAGEKGVPYQVKERQGTSVVARSPSTPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTW 80 (856)
T ss_pred CccchhhhhcCCCCCchhhcccCcccccccCccccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccc
Confidence 6667777776632 1111 1 1222222233347999999999999999999999987 4455544 4457777
Q ss_pred eee
Q 024958 70 GSF 72 (260)
Q Consensus 70 ~~~ 72 (260)
+++
T Consensus 81 hta 83 (856)
T KOG2844|consen 81 HTA 83 (856)
T ss_pred ccc
Confidence 754
No 282
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0015 Score=58.18 Aligned_cols=37 Identities=38% Similarity=0.618 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
...|.|||||++|.-||+.++++|+.|.++|..+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4679999999999999999999999999999987654
No 283
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.74 E-value=0.0016 Score=57.81 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=36.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccc
Q 024958 26 YGGPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (260)
Q Consensus 26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG 67 (260)
...++.|.+|||||+.|++.|..|.-+ +++|.|+|+...++-
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 345679999999999999999998887 899999999988763
No 284
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.71 E-value=0.00039 Score=58.36 Aligned_cols=39 Identities=38% Similarity=0.488 Sum_probs=34.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV 69 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~ 69 (260)
.||+|||||-+||++||...++ .++|.|+|..-.+||-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 5899999999999999999876 47999999998887653
No 285
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.70 E-value=0.0022 Score=51.53 Aligned_cols=32 Identities=44% Similarity=0.666 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|+|||||..|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999998765
No 286
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0017 Score=62.46 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..+.|++|||+|.+|-..|.+|+..|++|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 346899999999999999999998899999999873
No 287
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0034 Score=59.43 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..++|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 346899999999999999999999999999997653
No 288
>PLN02785 Protein HOTHEAD
Probab=96.60 E-value=0.0036 Score=60.87 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..+|++|||+|.+|+.+|.+|++ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35899999999999999999999 689999999864
No 289
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.59 E-value=0.0018 Score=57.98 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|.+.|+.|.++ |++|+|+|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 58999999999999999999874 799999999874
No 290
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.57 E-value=0.0033 Score=58.11 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~ 64 (260)
.+++|+|||||.+||.+|..|.++- .+++++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4689999999999999999999974 88999999764
No 291
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.57 E-value=0.0023 Score=58.06 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSF 64 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~ 64 (260)
+|+|||||++|+.+|.+|+++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999754 689999998765
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.46 E-value=0.0025 Score=52.74 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=27.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|||.|..||.+|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899999999999999999999999999998765
No 293
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.46 E-value=0.0038 Score=51.42 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+|+|||||..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998653
No 294
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.0044 Score=58.24 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+|.|||+|.+|+++|..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987654
No 295
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.32 E-value=0.0057 Score=56.40 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 468999999999999999999999999999998876543
No 296
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.29 E-value=0.0054 Score=54.71 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||+|..|.+.|..|+++|++|++++++..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999999999999999999999999998753
No 297
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.22 E-value=0.0081 Score=54.02 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998643
No 298
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.11 E-value=0.0082 Score=53.06 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+.++|+|||+|..|.+.|..|+++|++|+++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34689999999999999999999999999999864
No 299
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.10 E-value=0.0093 Score=55.74 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
.++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 194 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP 194 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC
Confidence 46899999999999999999999999999999887643
No 300
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.05 E-value=0.009 Score=52.84 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+|+|||+|..|...|..|++.|++|+++|.++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 58999999999999999999999999999887653
No 301
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.03 E-value=0.011 Score=56.10 Aligned_cols=52 Identities=73% Similarity=1.096 Sum_probs=45.0
Q ss_pred hhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHH
Q 024958 173 SLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 224 (260)
Q Consensus 173 p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el 224 (260)
+.+...||.+..++.+.++..+++.+++|..++|+..++|+..||.++|..|
T Consensus 422 a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i 473 (474)
T TIGR02732 422 SLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAI 473 (474)
T ss_pred ceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHh
Confidence 3344558988888888888899999999999999999999999999999765
No 302
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.96 E-value=0.0061 Score=57.12 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+|+|||+|++||++|..|.+. ++|+|+-|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999988 999999987764
No 303
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.01 Score=50.65 Aligned_cols=34 Identities=41% Similarity=0.606 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++++|||+|.-|.+.|..|.+.|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 5799999999999999999999999999998764
No 304
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.011 Score=52.11 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+|||+|..|.+.|..|++.|++|+++|.++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3689999999999999999999999999998764
No 305
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.93 E-value=0.011 Score=55.91 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 378999999999999999999999999999998765
No 306
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.90 E-value=0.022 Score=53.61 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4689999999999999999999999999999987653
No 307
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.89 E-value=0.012 Score=53.85 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 4689999999999999999999999999999877653
No 308
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.88 E-value=0.019 Score=54.08 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
+++++|||||..|+-.|.-+++.|.+|+|+|+.+++-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4789999999999999999999999999999988764
No 309
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.013 Score=54.82 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|.+|+++|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999864
No 310
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.83 E-value=0.012 Score=46.49 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
|+|+|+|..|...|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998876
No 311
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.82 E-value=0.012 Score=52.00 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|||+|..|...|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999988643
No 312
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.78 E-value=0.014 Score=54.89 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 3689999999999999999999999999999987654
No 313
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.73 E-value=0.017 Score=51.54 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|..|...|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34789999999999999999999999999998854
No 314
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.015 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|||+|..|.+.|..|++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999998753
No 315
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.70 E-value=0.018 Score=46.72 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=29.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+..+|+|+|+|.+|+.|+..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999764
No 316
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.66 E-value=0.016 Score=54.50 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 3789999999999999999999999999999987654
No 317
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.65 E-value=0.015 Score=54.26 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||.|..|+..|..|+++|++|++++.+..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999987544
No 318
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.63 E-value=0.018 Score=54.48 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 3789999999999999999999999999999988654
No 319
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.60 E-value=0.018 Score=54.20 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 3689999999999999999999999999999987653
No 320
>PRK06370 mercuric reductase; Validated
Probab=95.59 E-value=0.02 Score=53.95 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 47899999999999999999999999999999887643
No 321
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.55 E-value=0.02 Score=54.07 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4789999999999999999999999999999887653
No 322
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.53 E-value=0.021 Score=53.74 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=34.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999987754
No 323
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.52 E-value=0.021 Score=53.63 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 47899999999999999999999999999999887653
No 324
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.51 E-value=0.021 Score=53.66 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4789999999999999999999999999999988654
No 325
>PRK07846 mycothione reductase; Reviewed
Probab=95.50 E-value=0.021 Score=53.71 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 4789999999999999999999999999999987653
No 326
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.018 Score=52.74 Aligned_cols=32 Identities=34% Similarity=0.607 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
++|.|||.|-.||+.|..|++.||+|+++|..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 58999999999999999999999999999874
No 327
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.43 E-value=0.021 Score=50.35 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
++|+|||+|..|...|..|++.|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 37999999999999999999999999999884
No 328
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.42 E-value=0.025 Score=52.93 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~ 73 (260)
..||+|+|.|+.-...|..|++.|++|+.+|+++.=||.|++..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 48999999999988888899999999999999999999998754
No 329
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.42 E-value=0.02 Score=47.18 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|.++.-+|..|.+.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35899999999999999999999999999998765
No 330
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.40 E-value=0.025 Score=52.61 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 468999999999999999999999999999988765
No 331
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.38 E-value=0.024 Score=53.43 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3689999999999999999999999999999877653
No 332
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=95.38 E-value=0.006 Score=55.44 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~ 70 (260)
.+.+-|||+|++||++|..|.+. |.++.|+|.-+..||..-
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlD 66 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLD 66 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCC
Confidence 47899999999999999999986 469999999999999754
No 333
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.37 E-value=0.024 Score=49.80 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.+|+|||+|..|.+.|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999986543
No 334
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.34 E-value=0.024 Score=53.11 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
..+|+|||+|..|+-.|..|++.|.+|+++++.+.+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 36899999999999999999999999999999876543
No 335
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.32 E-value=0.026 Score=53.39 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 379999999999999999999999999999998765
No 336
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.28 E-value=0.025 Score=49.97 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~ 61 (260)
++|+|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999999999987
No 337
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.031 Score=47.52 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc----cCcccccceeee
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES----RSFIGGKVGSFI 73 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~----~~~~GG~~~~~~ 73 (260)
-+|+|||.|+++-.||++++++-++.++||. +..+||...+..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 3899999999999999999999999999996 234477766543
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.24 E-value=0.028 Score=49.74 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|+|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 679999999999999999999999999999765
No 339
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.21 E-value=0.025 Score=50.93 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|+|||+|..|.+.|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999864
No 340
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.21 E-value=0.029 Score=49.99 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999985
No 341
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.17 E-value=0.031 Score=52.61 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 4789999999999999999999999999999987653
No 342
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.09 E-value=0.049 Score=42.52 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~ 63 (260)
..++|+|||||-+|-++++.|.+.|.+ ++|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 458999999999999999999999986 99998753
No 343
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.08 E-value=0.02 Score=50.49 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYES 61 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G-------~~v~v~E~ 61 (260)
.++|+|||||+.||++|..+.+.+ .+|+|++-
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 479999999999999999888854 47788754
No 344
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.99 E-value=0.048 Score=45.86 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|..|...+..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35799999999999999999999999999997653
No 345
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.027 Score=50.69 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~ 61 (260)
-..|.+|||+|-+||++|...+..|.+|.|+|-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 348999999999999999999999999999985
No 346
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.86 E-value=0.049 Score=48.59 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|.|||+|..|.+.|..|.+.|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999864
No 347
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.85 E-value=0.043 Score=51.19 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|.+|+-+|..|++.|.+|+++++.+.+-
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 4689999999999999999999999999999877543
No 348
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.83 E-value=0.047 Score=43.99 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||-|..|...|.+|.++|++|.++++...
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5899999999999999999999999999998753
No 349
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.83 E-value=0.032 Score=51.88 Aligned_cols=34 Identities=38% Similarity=0.547 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||.|..|+..|..|+++|++|++++++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3799999999999999999999999999998654
No 350
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.039 Score=49.13 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999998754
No 351
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.82 E-value=0.038 Score=55.69 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 468999999999999999999999999999987765
No 352
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.82 E-value=0.041 Score=52.67 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 479999999999999999999999999999976654
No 353
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.81 E-value=0.048 Score=51.50 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 68 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 368999999999999999999999999999998766543
No 354
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.70 E-value=0.032 Score=52.99 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
..+||+|||||..|-.+|.-.+-+|+++.++|+.+-.-|+.+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 358999999999999999999999999999999998888754
No 355
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.70 E-value=0.046 Score=49.09 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|+|||+|..|.+.|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999999999854
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.67 E-value=0.051 Score=50.99 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 468999999999999999999999999999988765
No 357
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.65 E-value=0.046 Score=52.12 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|+|||+|..|.+.|..|+++|++|+++++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999998764
No 358
>PTZ00058 glutathione reductase; Provisional
Probab=94.65 E-value=0.048 Score=52.81 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4789999999999999999999999999999987653
No 359
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.62 E-value=0.056 Score=48.27 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~ 64 (260)
++|.|||+|..|...|+.|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 589999999999999999999887 8999997443
No 360
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.041 Score=52.40 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~ 61 (260)
.+||+|||||.||.-||...++.|.++.++-.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence 48999999999999999999999999888755
No 361
>PRK06116 glutathione reductase; Validated
Probab=94.56 E-value=0.056 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999999999999999999987754
No 362
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.54 E-value=0.048 Score=52.10 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46799999999999999999999999999998744
No 363
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.53 E-value=0.069 Score=42.95 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E 60 (260)
...++|+|||||-.|..-+..|.+.|.+|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 345899999999999999999999999999994
No 364
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.52 E-value=0.049 Score=48.51 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999998864
No 365
>PLN02507 glutathione reductase
Probab=94.52 E-value=0.056 Score=51.58 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 468999999999999999999999999999998764
No 366
>PRK10262 thioredoxin reductase; Provisional
Probab=94.48 E-value=0.056 Score=48.20 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 47899999999999999999999999999998764
No 367
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.47 E-value=0.062 Score=51.43 Aligned_cols=35 Identities=37% Similarity=0.508 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
-++|.|||+|..|...|..|++.|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36899999999999999999999999999997654
No 368
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.45 E-value=0.057 Score=48.41 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.|||||.-|.+.|..|++.|++|+++.++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 369999999999999999999999999999853
No 369
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.45 E-value=0.057 Score=53.28 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG 67 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 46899999999999999999999999999999887653
No 370
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.45 E-value=0.052 Score=55.10 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++++|||+|..|+-+|..|++.|.+|+|+|..+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 468999999999999999999999999999998764
No 371
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.056 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4689999999999999999999999999999764
No 372
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.05 Score=51.48 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|+|.|.+|.++|..|.++|.+|++.|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 468999999999999999999999999999964
No 373
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.43 E-value=0.064 Score=50.14 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3689999999999999999999999999999987654
No 374
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.42 E-value=0.072 Score=44.65 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..++|+|||||-.|...+..|.+.|.+|+|+.+.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999754
No 375
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.38 E-value=0.06 Score=51.53 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+.++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 3478999999999999999999999999999877653
No 376
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.35 E-value=0.066 Score=49.14 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45779999999999999999999999999999764
No 377
>PLN02256 arogenate dehydrogenase
Probab=94.33 E-value=0.066 Score=47.81 Aligned_cols=60 Identities=27% Similarity=0.245 Sum_probs=45.3
Q ss_pred ccccccCCCCCCCCCCCCCCCCC-CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 4 SLLLVSGSTEDPKCLFPPEPEHY-GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
||...+-...+|+....+..+.. .+..++|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 9 SLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CcccccccccCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44445555667777665554433 4556799999999999999999999999999998764
No 378
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.32 E-value=0.086 Score=50.35 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+..+|+|||+|+.||.++..+...|.+|+++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356799999999999999999999999999988754
No 379
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.27 E-value=0.069 Score=50.22 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|+-+|..|.+.|.+|+++++.+.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 47899999999999999999999999999988653
No 380
>PRK04148 hypothetical protein; Provisional
Probab=94.23 E-value=0.042 Score=42.98 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 689999999 898889999999999999998765
No 381
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.22 E-value=0.066 Score=51.76 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 47899999999999999999999999999998764
No 382
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.21 E-value=0.094 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~ 62 (260)
..||+|+|||+.|++.|..|... -++|.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999998864 2599999988
No 383
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.067 Score=50.91 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|+|.|.+|++++..|.++|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999965
No 384
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.20 E-value=0.0083 Score=58.65 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhh
Q 024958 160 LPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE 230 (260)
Q Consensus 160 ~~~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~ 230 (260)
...+.++-+....|+++++||.+.+.--...++.+......++-.++..+|+|.|.-|..+|.-|.+.+-.
T Consensus 100 ~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~ 170 (793)
T COG1251 100 VSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME 170 (793)
T ss_pred eecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCc
Confidence 45566777777899999999998765534334344333344444455567899999999999999875533
No 385
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.17 E-value=0.073 Score=47.56 Aligned_cols=34 Identities=41% Similarity=0.623 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~ 64 (260)
++|.|||+|..|.+.|+.|+.+| .++.++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 47999999999999999999999 48999998653
No 386
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.15 E-value=0.044 Score=40.73 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..++|+|||+|..|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4578999999999999999999999999999876
No 387
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.13 E-value=0.056 Score=50.68 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.++|+|+|-|.+|+++|..|.++|.+|+++|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 589999999999999999999999999999976655
No 388
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.07 E-value=0.084 Score=52.63 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+-++|+|||||..|...|+.++..|++|+++|.++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346899999999999999999999999999998754
No 389
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.05 E-value=0.097 Score=42.60 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccc
Q 024958 28 GPKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 28 ~~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
...++|+|||+|- +|..+|..|.++|.+|++..+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4468999999996 6999999999999999988864
No 390
>PRK13748 putative mercuric reductase; Provisional
Probab=94.02 E-value=0.081 Score=51.03 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 3689999999999999999999999999999753
No 391
>PRK14694 putative mercuric reductase; Provisional
Probab=94.00 E-value=0.089 Score=49.67 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999874
No 392
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.98 E-value=0.089 Score=45.82 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|.+|+-.|..|++.+.+|+++++.+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 46899999999999999999999999999998653
No 393
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.085 Score=49.45 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 394
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.95 E-value=0.084 Score=49.47 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~ 68 (260)
..||++||||+.|.+.++.|.+. ..++.||||-+.++.-
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 57999999999999999999986 5799999999988754
No 395
>PRK12831 putative oxidoreductase; Provisional
Probab=93.95 E-value=0.086 Score=49.84 Aligned_cols=35 Identities=40% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34799999999999999999999999999998754
No 396
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.93 E-value=0.07 Score=49.30 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=28.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|||.|..|+..|..++. |++|+++|.+..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 379999999999999987775 999999997543
No 397
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.90 E-value=0.07 Score=46.89 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999999764
No 398
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.88 E-value=0.093 Score=50.80 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcc
Q 024958 27 GGPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI 65 (260)
Q Consensus 27 ~~~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~ 65 (260)
....+|.+|||||-||...|.+|.+. ..+|+++|+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34569999999999999999999987 4799999997766
No 399
>PLN02546 glutathione reductase
Probab=93.81 E-value=0.088 Score=50.98 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4789999999999999999999999999999987653
No 400
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.78 E-value=0.094 Score=47.52 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~ 63 (260)
.++|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999987 99998754
No 401
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.74 E-value=0.11 Score=51.90 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+-++|+|||||..|-..|+.++..|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 457899999999999999999999999999997643
No 402
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.072 Score=49.01 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=39.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~ 73 (260)
..||+|||.|+.--..|..+.+.|..|+=+|.+..-||.|.++.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS 51 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS 51 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence 58999999999877777778899999999999999999999764
No 403
>PRK14727 putative mercuric reductase; Provisional
Probab=93.72 E-value=0.1 Score=49.39 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 378999999999999999999999999999875
No 404
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.67 E-value=0.13 Score=40.42 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=29.4
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958 31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGa-G~aGl~aA~~L~~~G~--~v~v~E~~~ 63 (260)
+||+|||| |..|-+.|+.|...++ ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 48999999 9999999999999976 788998764
No 405
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.091 Score=49.13 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+|+|+|.+|+++|..|+++|.+|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999998754
No 406
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.64 E-value=0.11 Score=48.38 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+.++|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 457999999999999999999999999999987653
No 407
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.60 E-value=0.12 Score=45.98 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||+|..|..++..|.+.|.+|+++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999999999999999998874
No 408
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.57 E-value=0.11 Score=43.87 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.6
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.||| +|..|.+.|..|.+.|++|+++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 4799997 79999999999999999999998754
No 409
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.56 E-value=0.097 Score=46.70 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
-++|+|||||..|-..|+.++..|++|+++|.+..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 47899999999999999999998899999998743
No 410
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.50 E-value=0.11 Score=49.51 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 368999999999999999999999999999974
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.49 E-value=0.16 Score=42.52 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..++|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4478999999999999999999999999998865
No 412
>PLN02602 lactate dehydrogenase
Probab=93.46 E-value=0.14 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~ 63 (260)
+||+|||+|..|-+.|+.|...++ ++.++|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999999886 789999754
No 413
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.44 E-value=0.12 Score=49.07 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHH---HCCCcEEEEcccCccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELL---DQGHEVDIYESRSFIG 66 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~---~~G~~v~v~E~~~~~G 66 (260)
.++|+|||+|..|+-.|..+. +.|.+|+|+|+.+.+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 478999999999999997554 3499999999988754
No 414
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.43 E-value=0.1 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~ 62 (260)
++|+|||+|..|+.+|..|+++| ++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 57999999999999999999985 789988864
No 415
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.40 E-value=0.13 Score=45.36 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
.++|+|||+|-+|-++++.|++.|. +++|+++..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3789999999999999999999997 799998753
No 416
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.37 E-value=0.11 Score=48.93 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|+|.|.+|.++|..|. +|.+|++.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence 478999999999999999998 59999999954
No 417
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.36 E-value=0.12 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 368999999999999999999999999999874
No 418
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.35 E-value=0.097 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999999999875
No 419
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.33 E-value=0.15 Score=45.73 Aligned_cols=35 Identities=31% Similarity=0.634 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~ 63 (260)
+..||+|||+|..|-++|+.|...|. ++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45799999999999999999999886 788998754
No 420
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.32 E-value=0.13 Score=45.89 Aligned_cols=34 Identities=41% Similarity=0.518 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~ 64 (260)
++|+|||+|..|.+.|+.|+..| .++.+++++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 37999999999999999999999 48999998654
No 421
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.24 E-value=0.14 Score=45.59 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
+||+|||+|..|.+.|+.++..|+ ++.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 999999754
No 422
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.22 E-value=0.15 Score=50.80 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~ 64 (260)
+.++|+|||||..|...|..++ +.|++|+++|.++.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4478999999999999999988 58999999998753
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.12 E-value=0.14 Score=47.21 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~ 62 (260)
++|+|||+|..|.++|..|+++| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 68999999999999999999999 899999987
No 424
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.11 E-value=0.13 Score=51.51 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
+-++|.|||||..|...|+.++..|++|+++|.++.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 447899999999999999999999999999997653
No 425
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.15 Score=48.39 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|.|+|.|.+|+++|..|.++|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 467999999999999999999999999999974
No 426
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.07 E-value=0.17 Score=45.55 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~ 64 (260)
++|+|||||..|.+.|+.++..|+ ++.++|.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 689999999999999999999996 9999997654
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.03 E-value=0.12 Score=46.21 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|+|+|..|...|++|++.|.+|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 5899999999999999999999999988877664
No 428
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.98 E-value=0.14 Score=45.26 Aligned_cols=35 Identities=40% Similarity=0.693 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+|.+||-|..|...|.+|.++|++|+++++....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence 47999999999999999999999999999988654
No 429
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.92 E-value=0.11 Score=48.93 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHH-HHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~-aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 57999999999999 59999999999999997543
No 430
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.92 E-value=0.16 Score=50.57 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~ 64 (260)
+-++|+|||||..|...|..++ ..|++|+++|.++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4478999999999999999998 88999999998643
No 431
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.17 Score=48.23 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|.|||.|.+|+++|..|.++|++|++.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999654
No 432
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.86 E-value=0.19 Score=42.05 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR 62 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~ 62 (260)
....+|+|||+|.-|...|..|++.|+ +++++|..
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999999999999999999998 69999875
No 433
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.84 E-value=0.16 Score=48.58 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45799999999999999999999999999998765
No 434
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.68 E-value=0.31 Score=34.73 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYES 61 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~ 61 (260)
..++++|+|+|..|..++..|.+. +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999998 678999987
No 435
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.66 E-value=0.16 Score=44.93 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++|+|||+|..|.+.|..|+..|.+|++++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998653
No 436
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.60 E-value=0.17 Score=44.95 Aligned_cols=33 Identities=33% Similarity=0.654 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998864
No 437
>PLN02712 arogenate dehydrogenase
Probab=92.55 E-value=0.24 Score=48.99 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCCCCCCCCCCC-CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 5 LLLVSGSTEDPKCLFPPEPEHYG-GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+...+-...+|..+.....+... ...++|.|||.|..|-+.|..|.+.|++|.++++..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 343 DMMRFQGVAQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred hhhhhhcccCCCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 33444556677776665544333 345899999999999999999999999999998864
No 438
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.49 E-value=0.14 Score=43.61 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
+.+.|.|||||..|...|.-.+..|++|.+++++...
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 4578999999999999999999999999999987653
No 439
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.48 E-value=0.23 Score=42.33 Aligned_cols=34 Identities=35% Similarity=0.582 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHE---VDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~---v~v~E~~~ 63 (260)
..+|+|+|||-+|..+|..|.+.|.. +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46899999999999999999999974 88999873
No 440
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.40 E-value=0.21 Score=47.04 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.+..+|+|||||.||.-||...++.|-+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56789999999999999999999999888887653
No 441
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.37 E-value=0.22 Score=37.21 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
|+|+|.|..|...+..|.+.+.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998889999998764
No 442
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=92.32 E-value=0.21 Score=47.00 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G 66 (260)
...++|+|||+|.+|.-.|-.|.+.|.+|+++-|.+.-.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 345899999999999999999999999999999877543
No 443
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.32 E-value=0.19 Score=46.82 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..+|.|||-|.+|.++|..|.++|++|+++|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999754
No 444
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.23 E-value=0.28 Score=44.03 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~ 64 (260)
.+||+|||||..|-+.|+.|...|+ ++.++|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3699999999999999999999997 7999997543
No 445
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.20 E-value=0.24 Score=43.26 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+|+|+|-+|.+.++.|++.|.+|+++.+..
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998753
No 446
>PLN02712 arogenate dehydrogenase
Probab=92.18 E-value=0.3 Score=48.36 Aligned_cols=36 Identities=39% Similarity=0.447 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..+++|.|||.|..|-+.|..|.+.|++|+++++++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 445789999999999999999999999999998763
No 447
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.17 E-value=0.2 Score=44.19 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998764
No 448
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.17 E-value=0.22 Score=40.20 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.++++|+|=|..|-..|.+|+..|.+|+|.|..+.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 47899999999999999999999999999998763
No 449
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=92.10 E-value=0.26 Score=43.62 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
....+|-.||=|.-|-..+..|.+.||+|+|+++...
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~ 69 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKD 69 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHH
Confidence 3468899999999999999999999999999997643
No 450
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.10 E-value=0.22 Score=44.19 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||.|..|.+.|..|.+.|++|.+++++..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3799999999999999999999999999988753
No 451
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.08 E-value=0.2 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|+|+|+|..|...|..|.++|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998543
No 452
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.07 E-value=0.18 Score=47.38 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|.|||.|-+|+++|..|.++|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 358999999999999999999999999999965
No 453
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.05 E-value=0.33 Score=38.21 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~ 63 (260)
.++|+|||+|..|.+.+..|.+.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 478999999999999999999986 7899998754
No 454
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.01 E-value=0.093 Score=40.70 Aligned_cols=34 Identities=41% Similarity=0.508 Sum_probs=26.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958 27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60 (260)
Q Consensus 27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E 60 (260)
+.++.+|.|||+|-.|-+.|..|.+.|+.|.-+.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999999999999999999999887654
No 455
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.00 E-value=0.25 Score=45.89 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
..++|+|||.|..|...|..++..|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45799999999999999999999999999998765
No 456
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.97 E-value=0.29 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~ 63 (260)
.++|+|+|||-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46799999999999999999999986 99998753
No 457
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.96 E-value=0.25 Score=46.06 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------CCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLD--------------QGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~--------------~G~~v~v~E~~~~~ 65 (260)
++|+|||+|..|+-.|..|++ .+.+|+++|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999988875 47899999987765
No 458
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.94 E-value=0.24 Score=46.65 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
.++|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999998 899998754
No 459
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.84 E-value=0.23 Score=49.84 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~ 63 (260)
.++|+|||+|..|+-+|..+.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47899999999999999999999987 99998764
No 460
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.83 E-value=0.28 Score=35.38 Aligned_cols=33 Identities=45% Similarity=0.548 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEE-cccCc
Q 024958 32 KVAIIGAGLAGMSTAVELLDQG---HEVDIY-ESRSF 64 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G---~~v~v~-E~~~~ 64 (260)
+|.|||+|-.|.+.+..|.+.| .+|.+. ++++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 6899999999999999999999 888855 76543
No 461
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.81 E-value=0.28 Score=38.07 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
..+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3689999999999999999999998 799998643
No 462
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.79 E-value=0.23 Score=44.11 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|.|||.|..|...|..|.+.|++|+++++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 79999999999999999999999999998864
No 463
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.69 E-value=0.24 Score=45.54 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+||| .|..|-+.|..|+++|++|+++++++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 47899999 89999999999999999999999754
No 464
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.14 Score=46.35 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+||+|||+|-+|+-||+.|+.-=..|+++|=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 4899999999999999999985445899998443
No 465
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.49 E-value=0.31 Score=45.50 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..++|+|+|.|..|..+|..|+..|.+|+++|..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 457899999999999999999999999999997653
No 466
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.44 E-value=0.43 Score=43.63 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.9
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958 29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
..++|+|.|| |..|...+..|.++|++|+++.+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4578999998 999999999999999999999864
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.42 E-value=0.38 Score=39.68 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|+|| |..|..++..|.+.|.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999997 999999999999999999999765
No 468
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.40 E-value=0.26 Score=46.25 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 358999999999999999999999999999754
No 469
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.30 E-value=0.2 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.-+|+|||+|..|.-+|.-....|-+|+|+|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999983
No 470
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.19 E-value=0.37 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~ 63 (260)
.++|+|+|+|-+|.++++.|.+.| .+|+|+.|+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 468999999999999999999999 6899998753
No 471
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.19 E-value=0.34 Score=43.33 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~ 63 (260)
||+|||+|..|-++|+.|..+++ ++.++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 68999999999999999999887 799999753
No 472
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.17 E-value=0.32 Score=43.14 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|.|||.|..|...|..|.+.|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 473
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.11 E-value=0.32 Score=43.27 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~ 63 (260)
.+|+|||+|..|.+.|..|.+.|+ +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 689999999999999999999985 899998764
No 474
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.11 E-value=0.28 Score=43.53 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958 33 VAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (260)
Q Consensus 33 v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~ 64 (260)
|+|||||..|...|+.|+.+|+ +|+++|.+..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999999999887 9999998653
No 475
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.07 E-value=0.31 Score=45.56 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|.|||.|.+|++++..|+++|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3679999999999999999999999999999654
No 476
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.04 E-value=0.34 Score=40.06 Aligned_cols=33 Identities=45% Similarity=0.634 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+||+|||| |.+|-..+..+.++|++||.+=|++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeCh
Confidence 58999998 8999999999999999999987764
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.03 E-value=0.34 Score=45.30 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
..++|+|+|+|..|...|..|.+.|++|+++|++..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 357899999999999999999999999999998754
No 478
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=90.98 E-value=0.23 Score=44.55 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=29.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~-~v~v~E~~~ 63 (260)
..++|+|||+|.+|+++|..+.++ |. +|-|+|-.+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 348999999999999999998876 43 888998764
No 479
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=1 Score=42.66 Aligned_cols=91 Identities=45% Similarity=0.714 Sum_probs=67.5
Q ss_pred hhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH----------------------hhhccCCCCCCCCCCCCCCCCcc
Q 024958 137 DYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR----------------------QSLYRGGPGKVPLRTDQKTPVKN 194 (260)
Q Consensus 137 ~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~----------------------~p~~p~~pG~~~F~G~~~hs~~~ 194 (260)
+|.+.+....++.+..++..+.....+++...+.. ++.+-..||+..+++.+.||+.+
T Consensus 350 ~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N 429 (485)
T COG3349 350 DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPN 429 (485)
T ss_pred hhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhcccccccceeccccccccCCCccccCCCCCCCccc
Confidence 66777665556665555555544444443333322 44455668999999999999999
Q ss_pred ccccccccccccccchhHHHHhHHHHHHHHHHh
Q 024958 195 LFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA 227 (260)
Q Consensus 195 yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~ 227 (260)
+..+++|....+.-.|+|+-.||..+|..+...
T Consensus 430 ~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~ 462 (485)
T COG3349 430 LLLAGDYTKQPYLGSMEGATLSGLLAANAILDN 462 (485)
T ss_pred hhhccceeecCCcCccchhhhhHHHHHHHHHHh
Confidence 999999998889999999999999999888754
No 480
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.92 E-value=0.4 Score=43.11 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~ 63 (260)
.++|+|||||..|-+.|+.|...| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999998 5888998754
No 481
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.85 E-value=0.29 Score=45.40 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 46899999999999999999 99999999954
No 482
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.84 E-value=0.13 Score=47.09 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 70 (260)
+++.+|||||..||-.+.--.+.|-+||++|-.+.+||.+-
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence 57899999999999999988999999999999999998743
No 483
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.78 E-value=0.26 Score=46.68 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~ 65 (260)
.+|.|||.|..|.+.|..|+++|++|+++++....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~ 36 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEK 36 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 47999999999999999999999999999987553
No 484
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.76 E-value=0.4 Score=42.11 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
++|+|+|||-++.++++.|.+.|. +++|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 589999999999999999999997 599998764
No 485
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.69 E-value=0.31 Score=45.40 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|.|||.|-+|+++|..|.++|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999999999999999999999999999654
No 486
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=90.53 E-value=0.45 Score=41.98 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
.++|+|||||-+|-++++.|.+.|. +++|+.|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4689999999999999999999997 799997753
No 487
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.50 E-value=0.49 Score=40.93 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
.|..+++|+|||..+...|..+...|++|+|+|-++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4668999999999999999999999999999986544
No 488
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.44 E-value=0.39 Score=40.38 Aligned_cols=30 Identities=43% Similarity=0.588 Sum_probs=27.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E 60 (260)
+.+.|+|+|-.|.+.|.+|++.|++|+|--
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs 31 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGS 31 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEec
Confidence 578999999999999999999999999873
No 489
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.41 E-value=0.38 Score=43.88 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (260)
Q Consensus 31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~ 64 (260)
++|.|||.|..|-+.|..|++.|+++.+++.+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~ 34 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS 34 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 3699999999999999999999999999987654
No 490
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.36 E-value=0.41 Score=42.44 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+|.|||.|..|...|..|.+.|++|+++++.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~ 33 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGP 33 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999998754
No 491
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.30 E-value=0.47 Score=43.01 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
....+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 446789999999999999999999998 889998753
No 492
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.18 E-value=0.46 Score=42.50 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~ 63 (260)
+..+|+|||+|..|..++..|...| .+|+++++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4688999999999999999998876 6899998764
No 493
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.05 E-value=0.49 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~ 62 (260)
.++|+|+|+|-+|.++++.|+++|.+|+++.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999764
No 494
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.05 E-value=0.5 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
.++|+|+|||-++-++++.|.+.|. +++|+.|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4689999999999999999999996 788998754
No 495
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.99 E-value=0.33 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4789999999999999999999999999998754
No 496
>PLN02494 adenosylhomocysteinase
Probab=89.98 E-value=0.49 Score=44.70 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
.+.|+|+|.|..|...|.+++..|.+|+++|..+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999765
No 497
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.97 E-value=0.49 Score=44.22 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~ 63 (260)
...+|+|||+|..|..++..|...|. +|+++++..
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 45789999999999999999999997 788998864
No 498
>PRK08017 oxidoreductase; Provisional
Probab=89.88 E-value=0.49 Score=40.19 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958 31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
+.|+|+|| |..|.+.|..|.++|++|+++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46999998 9999999999999999999987754
No 499
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.87 E-value=0.51 Score=44.05 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (260)
Q Consensus 29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~ 63 (260)
...+|+|||+|..|..++..|...| .+|+++.+..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4578999999999999999999999 6899998754
No 500
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.79 E-value=0.87 Score=38.98 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCCCcEEEECC-C-HHHHHHHHHHHHCCCcEEEEcccC
Q 024958 28 GPKLKVAIIGA-G-LAGMSTAVELLDQGHEVDIYESRS 63 (260)
Q Consensus 28 ~~~~~v~VIGa-G-~aGl~aA~~L~~~G~~v~v~E~~~ 63 (260)
...+.++|.|| | -.|.+.|..|+++|++|++.+++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34578999997 5 589999999999999999987654
Done!