BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024960
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 7 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 62
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 63 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 113
Query: 132 FNEPSNGYLVDDTCAFGAEVYV 153
+P G++ DD F EV+V
Sbjct: 114 VTDPEKGFIDDDKVTF--EVFV 133
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 21 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 76
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 77 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 127
Query: 132 FNEPSNGYLVDDTCAFGAEVYVVKPTDS 159
+P G++ DD F EV+V D+
Sbjct: 128 VTDPEKGFIDDDKVTF--EVFVQADLDA 153
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 21 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 76
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 77 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 127
Query: 132 FNEPSNGYLVDDTCAFGAEVYV 153
+P G++ DD F EV+V
Sbjct: 128 VTDPEKGFIDDDKVTF--EVFV 147
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 19 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 74
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 75 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 125
Query: 132 FNEPSNGYLVDDTCAFGAEVYV 153
+P G++ DD F EV+V
Sbjct: 126 VTDPEKGFIDDDKVTF--EVFV 145
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 21 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 76
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 77 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 127
Query: 132 FNEPSNGYLVDDTCAFGAEVYV 153
+P G++ DD F EV+V
Sbjct: 128 VTDPEKGFIDDDKVTF--EVFV 147
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 16 ADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDS 75
A + +E F LS+S + S WK++ P + + + +L+ +
Sbjct: 31 ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE 86
Query: 76 NPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRR----FDRRKTDWGFGKFLDLAT 131
+ + + K+ Y D K+ RR F ++ DWGF F+ +
Sbjct: 87 SDSTSWSCHAQAVLKIINYRD---------DEKSFSRRISHLFFHKENDWGFSNFMAWSE 137
Query: 132 FNEPSNGYLVDDTCAFGAEVYV 153
+P G++ DD F EV+V
Sbjct: 138 VTDPEKGFIDDDKVTF--EVFV 157
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 18 YSLKIESFKLLSKSTVESFESGVFKSGG---YNWKLVFYPNGKKNDGGKDHLSLYLKIDD 74
Y I +F + E +S F SG W L P G ++ KD+LSLYL +
Sbjct: 9 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGL-DEESKDYLSLYLLLVS 67
Query: 75 SNPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNE 134
P + V +K + + + ++ +A RF + K DWGF KF+ +
Sbjct: 68 C-PKSE----VRAKFKFSILNAKGEETKAMESQRA--YRFVQGK-DWGFKKFIRRGFLLD 119
Query: 135 PSNGYLVDDTCAFGAEVYVVKPT 157
+NG L DD EV VV+ +
Sbjct: 120 EANGLLPDDKLTLFCEVSVVQDS 142
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 18 YSLKIESFKLLSKSTVESFESGVFKSGG---YNWKLVFYPNGKKNDGGKDHLSLYLKIDD 74
Y I +F + E +S F SG W L P G ++ KD+LSLYL +
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGL-DEESKDYLSLYLLLVS 71
Query: 75 SNPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNE 134
P + V +K + + + ++ +A RF + K DWGF KF+ +
Sbjct: 72 C-PKSE----VRAKFKFSILNAKGEETKAMESQRA--YRFVQGK-DWGFKKFIRRGFLLD 123
Query: 135 PSNGYLVDDTCAFGAEVYVVK 155
+NG L DD EV VV+
Sbjct: 124 EANGLLPDDKLTLFCEVSVVQ 144
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 18 YSLKIESFKLLSKSTVESFESGVFKSGG---YNWKLVFYPNGKKNDGGKDHLSLYLKIDD 74
Y I +F + E +S F SG W L P G ++ KD+LSLYL +
Sbjct: 14 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGL-DEESKDYLSLYLLLVS 72
Query: 75 SNPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNE 134
P + V +K + + + ++ +A RF + K DWGF KF+ +
Sbjct: 73 C-PKSE----VRAKFKFSILNAKGEETKAMESQRA--YRFVQGK-DWGFKKFIRRDFLLD 124
Query: 135 PSNGYLVDDTCAFGAEVYVVKPT 157
+NG L DD EV VV+ +
Sbjct: 125 EANGLLPDDKLTLFCEVSVVQDS 147
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 18 YSLKIESFKLLSKSTVESFESGVFKSGG---YNWKLVFYPNGKKNDGGKDHLSLYLKIDD 74
Y I +F + E +S F SG W L P G ++ KD+LSLYL +
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGL-DEESKDYLSLYLLLVS 71
Query: 75 SNPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNE 134
P + V +K + + + ++ +A RF + K DWGF KF+ +
Sbjct: 72 C-PKSE----VRAKFKFSILNAKGEETKAMESQRA--YRFVQGK-DWGFKKFIRRDFLLD 123
Query: 135 PSNGYLVDDTCAFGAEVYVVK 155
+NG L DD EV VV+
Sbjct: 124 EANGLLPDDKLTLFCEVSVVQ 144
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 13/136 (9%)
Query: 21 KIESFKLLSKSTVESFESGVFKS------GGYNWKLVFYPNGKKNDGGKDHLSLYLKIDD 74
K+ +++ + VE VF GY Y NG + G HLSLY +
Sbjct: 29 KVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGT-HLSLYFVVMR 87
Query: 75 SNPHPDGTWNVNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDW------GFGKFLD 128
W L + DQ + +V+ KA ++ D G +F+
Sbjct: 88 GEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVS 147
Query: 129 LATFNEPSNGYLVDDT 144
+T N Y+ DDT
Sbjct: 148 HSTLENSKNTYIKDDT 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,710,872
Number of Sequences: 62578
Number of extensions: 397394
Number of successful extensions: 721
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 16
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)