Query 024960
Match_columns 260
No_of_seqs 298 out of 1690
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 4E-32 1.4E-36 210.4 11.5 140 8-156 3-145 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 6.7E-31 2.3E-35 205.7 13.1 137 13-158 16-152 (155)
3 3hqi_A Speckle-type POZ protei 100.0 5.8E-31 2E-35 228.5 9.4 179 12-203 3-188 (312)
4 4gjh_A TNF receptor-associated 100.0 1E-29 3.5E-34 203.3 8.5 144 11-156 19-175 (178)
5 1lb6_A TNF receptor-associated 100.0 1.2E-28 4.3E-33 193.8 10.5 141 13-156 2-158 (160)
6 4ghu_A TNF receptor-associated 100.0 3.8E-29 1.3E-33 202.8 7.0 142 12-157 36-190 (198)
7 1ca9_A TRAF2, protein (TNF rec 99.9 5.1E-28 1.7E-32 195.8 8.5 140 13-155 40-191 (192)
8 1d00_A Tumor necrosis factor r 99.9 6.2E-28 2.1E-32 191.3 7.9 140 13-155 16-167 (168)
9 2gkw_A TNF receptor-associated 99.9 4.3E-28 1.5E-32 196.0 5.9 138 14-155 38-188 (192)
10 1flk_A TNF receptor associated 99.9 4.4E-27 1.5E-31 194.9 6.6 140 13-156 73-225 (228)
11 2f1z_A Ubiquitin carboxyl-term 99.9 2.4E-25 8.2E-30 205.8 11.1 136 13-157 28-163 (522)
12 2foj_A Ubiquitin carboxyl-term 99.7 1.6E-16 5.4E-21 123.8 10.1 82 168-251 15-97 (155)
13 3ivv_A Speckle-type POZ protei 99.7 2.7E-16 9.1E-21 121.2 10.2 80 170-253 9-94 (145)
14 1ca9_A TRAF2, protein (TNF rec 99.7 3.6E-17 1.2E-21 131.9 4.5 85 169-253 40-134 (192)
15 4ghu_A TNF receptor-associated 99.6 8.9E-17 3E-21 130.0 5.1 81 170-250 38-128 (198)
16 4gjh_A TNF receptor-associated 99.6 1.5E-16 5.2E-21 126.7 5.7 83 169-251 21-113 (178)
17 1lb6_A TNF receptor-associated 99.6 1.8E-16 6.2E-21 124.1 6.0 80 171-250 4-94 (160)
18 1d00_A Tumor necrosis factor r 99.6 9.8E-17 3.4E-21 126.6 4.1 84 170-253 17-110 (168)
19 2gkw_A TNF receptor-associated 99.6 1.6E-16 5.4E-21 128.1 4.4 81 170-250 38-128 (192)
20 1flk_A TNF receptor associated 99.6 3.8E-16 1.3E-20 129.1 3.9 82 170-251 74-165 (228)
21 2f1z_A Ubiquitin carboxyl-term 99.5 3.2E-14 1.1E-18 131.3 9.7 82 169-252 28-110 (522)
22 4gwm_A Meprin A subunit beta; 99.5 2.7E-14 9.3E-19 131.9 8.2 142 10-159 400-571 (592)
23 3hqi_A Speckle-type POZ protei 99.5 1E-13 3.5E-18 119.7 9.9 79 172-254 7-91 (312)
24 4gwm_A Meprin A subunit beta; 98.3 1.5E-05 5.1E-10 73.8 15.5 76 169-249 403-484 (592)
25 1jya_A YOPE regulator; specifi 50.7 17 0.00059 26.2 3.8 27 193-226 28-54 (130)
26 3v0r_A Major allergen ALT A 1; 45.5 6.7 0.00023 28.4 1.0 32 11-43 7-38 (133)
27 4eoz_A Speckle-type POZ protei 28.6 7.3 0.00025 28.1 -1.2 35 165-203 4-39 (145)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=4e-32 Score=210.40 Aligned_cols=140 Identities=27% Similarity=0.426 Sum_probs=117.4
Q ss_pred eecccCCCceEEEEEcCccccccccCCeeEeccEEECCe---eeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCCCCCcE
Q 024960 8 REKRSLPPADYSLKIESFKLLSKSTVESFESGVFKSGGY---NWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHPDGTWN 84 (260)
Q Consensus 8 ~~~~~~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~gg~---~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~~~~w~ 84 (260)
..+.++..++|+|+|+|||.+++..++.++||+|.+||| +|+|++||+|.. .+..+|||+||.|.+.. + |+
T Consensus 3 ~~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~----~-w~ 76 (145)
T 3ivv_A 3 GGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----K-SE 76 (145)
T ss_dssp --CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEECS----S-SE
T ss_pred CCCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCCC----C-Cc
Confidence 456778899999999999998753467899999999996 999999999976 23568999999998652 3 99
Q ss_pred EEEEEEEEEEeCcCCceeEEeccCCCceeccCCCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecC
Q 024960 85 VNVYYKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKP 156 (260)
Q Consensus 85 v~~~~~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~ 156 (260)
++|+|+|+|+||.++....... ...++|.. ..+|||.+||++++|++++++||+||+|+|+|+|+|+++
T Consensus 77 v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 77 VRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999999999999887554332 25678874 578999999999999876799999999999999999864
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.97 E-value=6.7e-31 Score=205.72 Aligned_cols=137 Identities=20% Similarity=0.391 Sum_probs=113.1
Q ss_pred CCCceEEEEEcCccccccccCCeeEeccEEECCeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCCCCCcEEEEEEEEE
Q 024960 13 LPPADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHPDGTWNVNVYYKLF 92 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~gg~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~~~~w~v~~~~~~~ 92 (260)
.+.++|+|+|+|||.++ +.++|++|.+||++|+|++||+|....+..+||||||+|... ..+.+ |+++|+|+|+
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~-w~v~a~~~l~ 89 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTS-WSCHAQAVLK 89 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSS-CEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCC-CEEEEEEEEE
Confidence 45799999999999994 579999999999999999999997521246899999999654 34556 9999999999
Q ss_pred EEeCcCCceeEEeccCCCceeccCCCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecCCC
Q 024960 93 VYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKPTD 158 (260)
Q Consensus 93 l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~~~ 158 (260)
|+||+++.....+. ..+.|.....+|||.+||++++|++++++||+||+|+|+|+|+|.+++|
T Consensus 90 l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG 152 (155)
T 2foj_A 90 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 152 (155)
T ss_dssp ECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBS
T ss_pred EEcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccc
Confidence 99999875333222 5678877668899999999999998889999999999999999987765
No 3
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.97 E-value=5.8e-31 Score=228.48 Aligned_cols=179 Identities=24% Similarity=0.383 Sum_probs=140.1
Q ss_pred cCCCceEEEEEcCccccccccCCeeEeccEEECCe---eeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCCCCCcEEEEE
Q 024960 12 SLPPADYSLKIESFKLLSKSTVESFESGVFKSGGY---NWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHPDGTWNVNVY 88 (260)
Q Consensus 12 ~~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~gg~---~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~~~~w~v~~~ 88 (260)
++..|+|+|+|+|||.++...++.+.||+|.+||| +|+|++||+|.. ++..+|+|+||.|.+.+ + |+++|+
T Consensus 3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~-~~v~a~ 76 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----K-SEVRAK 76 (312)
T ss_dssp EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C--CEEEE
T ss_pred ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----C-CcEEEE
Confidence 34578999999999999743468999999999985 999999999976 34578999999998654 2 999999
Q ss_pred EEEEEEeCcCCceeEEeccCCCceeccCCCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecCCCc---cceeec
Q 024960 89 YKLFVYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKPTDS---EEILSL 165 (260)
Q Consensus 89 ~~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~~~~---~~~~~~ 165 (260)
|+|+|+|++++....... ...++|... .+|||.+||+|++|+++.+|||+||+|+|+|+|+|++.... .+....
T Consensus 77 ~~~~l~~~~~~~~~~~~~--~~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~ 153 (312)
T 3hqi_A 77 FKFSILNAKGEETKAMES--QRAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNM 153 (312)
T ss_dssp EEEEEECTTSCEEEEEEC--SSCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSS
T ss_pred EEEEEEeCCCCccccccc--CCceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccc
Confidence 999999999987655432 256788754 68999999999999877789999999999999999976432 122344
Q ss_pred ccCCCCcceEEEeCCccCcC-CceeecCceEeCCeEEEE
Q 024960 166 VSDPADGNYRFNIPAFGSVG-DTVQRSSEFTVGERNWQL 203 (260)
Q Consensus 166 i~~p~~~~~~~~i~~fs~l~-~~~~~s~~f~vgg~~w~l 203 (260)
+.+|++.. .+++..+. .+.++|++|.|+|.+|+.
T Consensus 154 ~~~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~~ 188 (312)
T 3hqi_A 154 VKVPECRL----ADELGGLWENSRFTDCCLCVAGQEFQA 188 (312)
T ss_dssp CCCCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEEE
T ss_pred cCCCCchH----HHHHHHHHhCCCCCceEEEECCEEEeH
Confidence 66777654 45676655 467899999999988755
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.96 E-value=1e-29 Score=203.31 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=114.3
Q ss_pred ccCCCceEEEEEcCccccccc---c-CCeeEeccEEEC--CeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCC-CCCCCc
Q 024960 11 RSLPPADYSLKIESFKLLSKS---T-VESFESGVFKSG--GYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNP-HPDGTW 83 (260)
Q Consensus 11 ~~~~~g~~~w~I~~fs~~~~~---~-~~~~~S~~F~~g--g~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~-~~~~~w 83 (260)
..+..|+|+|+|+|||.+++. + +..++||+|.+| ||+|+|++||+|+. .+..+||||||.|.+++. ...+ |
T Consensus 19 ~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~-W 96 (178)
T 4gjh_A 19 GACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQ-W 96 (178)
T ss_dssp HCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSC-S
T ss_pred CcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccC-C
Confidence 357789999999999998752 2 348999999999 99999999999986 334689999999987643 1234 9
Q ss_pred EEEEEEEEEEEeCcCCceeEEec--cCCCceeccC----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecC
Q 024960 84 NVNVYYKLFVYDQVSNQYLVVQD--AKAPMRRFDR----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKP 156 (260)
Q Consensus 84 ~v~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~ 156 (260)
+++|+|+|+|+||.++....... .+...+.|.. ...+|||.+||++++|++++++||+||+|+|+|+|.|.+.
T Consensus 97 ~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 97 PFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp SCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred ceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999999999765333210 0113467763 3468999999999999977799999999999999976543
No 5
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=1.2e-28 Score=193.77 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=106.6
Q ss_pred CCCceEEEEEcCcccccc-c-cCC--eeEeccEEEC--CeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCC-CCCCcEE
Q 024960 13 LPPADYSLKIESFKLLSK-S-TVE--SFESGVFKSG--GYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPH-PDGTWNV 85 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~-~-~~~--~~~S~~F~~g--g~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~-~~~~w~v 85 (260)
...|+|+|+|+|||.+++ . .|+ .++||+|.+| ||+|+|++||+|...+...+|||+||.+.+++.. ..+ |++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~-wp~ 80 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLP-WPF 80 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSC-SSC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCC-Cce
Confidence 357999999999999875 2 255 8999999999 9999999999997632236899999999876542 234 999
Q ss_pred EEEEEEEEEeCcCCcee----EEeccCCCceeccC-----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecC
Q 024960 86 NVYYKLFVYDQVSNQYL----VVQDAKAPMRRFDR-----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKP 156 (260)
Q Consensus 86 ~~~~~~~l~n~~~~~~~----~~~~~~~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~ 156 (260)
+|+|+|+|+||.+.... .....+.....|.. ...+|||.+||++++|+ +++||+||+|+|+|+|+|+.+
T Consensus 81 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 81 QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp CSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 99999999999875211 00000112234542 12379999999999999 689999999999999999865
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=3.8e-29 Score=202.76 Aligned_cols=142 Identities=22% Similarity=0.231 Sum_probs=112.1
Q ss_pred cCCCceEEEEEcCcccccc---cc-CCeeEeccEEEC--CeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCC-CCCcE
Q 024960 12 SLPPADYSLKIESFKLLSK---ST-VESFESGVFKSG--GYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHP-DGTWN 84 (260)
Q Consensus 12 ~~~~g~~~w~I~~fs~~~~---~~-~~~~~S~~F~~g--g~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~-~~~w~ 84 (260)
.+..|+|+|+|+|||.++. .+ ++.++||+|.+| ||+|+|++||+|+. .+..+||||||.+.+++... .+ |+
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~-wp 113 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLP-WP 113 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSC-SS
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCC-ce
Confidence 4578999999999999875 22 578999999999 99999999999986 23468999999998765322 24 99
Q ss_pred EEEEEEEEEEeCcCCceeEEecc--CCCceec----cCCCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecCC
Q 024960 85 VNVYYKLFVYDQVSNQYLVVQDA--KAPMRRF----DRRKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKPT 157 (260)
Q Consensus 85 v~~~~~~~l~n~~~~~~~~~~~~--~~~~~~F----~~~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~~ 157 (260)
++|+|+|.|+||.+......... +.....| ...+.+|||.+||++++|+ ++|||+||+|+|+|+|+|+..+
T Consensus 114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 99999999999997643332110 0111233 3345789999999999999 5899999999999999887754
No 7
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.95 E-value=5.1e-28 Score=195.77 Aligned_cols=140 Identities=22% Similarity=0.293 Sum_probs=110.3
Q ss_pred CCCceEEEEEcCccccccc--cCC--eeEeccEEE--CCeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCC-CCCcEE
Q 024960 13 LPPADYSLKIESFKLLSKS--TVE--SFESGVFKS--GGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHP-DGTWNV 85 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~~--~~~--~~~S~~F~~--gg~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~-~~~w~v 85 (260)
...|+|+|+|+|||.+++. .|+ .++||+|.+ |||+|+|++||+|+. .+..+|||+||.+.+++..+ .+ |++
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~-W~~ 117 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLR-WPF 117 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSC-SSC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCC-Cce
Confidence 5789999999999998752 244 699999999 999999999999976 23468999999998775433 45 999
Q ss_pred EEEEEEEEEeCcCCceeEEe-ccCCCceeccC----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEec
Q 024960 86 NVYYKLFVYDQVSNQYLVVQ-DAKAPMRRFDR----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVK 155 (260)
Q Consensus 86 ~~~~~~~l~n~~~~~~~~~~-~~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~ 155 (260)
+|+|+|.|+||.+....... ..+.....|.. ...+|||.+||++++|++ .++||+||+|+|+|+|+|.+
T Consensus 118 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 118 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 99999999999987432211 00012234642 346899999999999986 57999999999999998754
No 8
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.94 E-value=6.2e-28 Score=191.27 Aligned_cols=140 Identities=22% Similarity=0.277 Sum_probs=108.7
Q ss_pred CCCceEEEEEcCccccccc--cCC--eeEeccEE--ECCeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCC-CCCcEE
Q 024960 13 LPPADYSLKIESFKLLSKS--TVE--SFESGVFK--SGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHP-DGTWNV 85 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~~--~~~--~~~S~~F~--~gg~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~-~~~w~v 85 (260)
...|+|+|+|+|||.+++. .++ .++||+|. +|||+|+|++||+|.. .+..+|||+||.|.++...+ .+ |++
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~-w~~ 93 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLR-WPF 93 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSC-SSC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCC-Cce
Confidence 4789999999999999753 244 49999996 7899999999999976 23468999999998765433 35 999
Q ss_pred EEEEEEEEEeCcCCceeEEec-cCCCceeccC----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEec
Q 024960 86 NVYYKLFVYDQVSNQYLVVQD-AKAPMRRFDR----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVK 155 (260)
Q Consensus 86 ~~~~~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~ 155 (260)
+|+|+|+|+||.+.......- .......|.. ...+|||.+||++++|+++ ++||+||+|+|+|+|+|.+
T Consensus 94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 999999999999865332110 0001235653 3578999999999999953 3999999999999998743
No 9
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=4.3e-28 Score=196.03 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=109.3
Q ss_pred CCceEEEEEcCcccccc-cc-CC--eeEeccEEEC--CeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCC-CCCcEEE
Q 024960 14 PPADYSLKIESFKLLSK-ST-VE--SFESGVFKSG--GYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHP-DGTWNVN 86 (260)
Q Consensus 14 ~~g~~~w~I~~fs~~~~-~~-~~--~~~S~~F~~g--g~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~-~~~w~v~ 86 (260)
..|+|+|+|+|||.+++ .+ |+ .++||+|.+| ||+|+|++||+|+. .+..+|||+||.+.+++.++ .+ |+++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~-wp~~ 115 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLP-WPFK 115 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSC-SSCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCC-CcEE
Confidence 78999999999999974 22 45 5999999999 99999999999976 24568999999998765432 35 9999
Q ss_pred EEEEEEEEeCcCCceeEEec--cCCCceeccC----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEec
Q 024960 87 VYYKLFVYDQVSNQYLVVQD--AKAPMRRFDR----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVK 155 (260)
Q Consensus 87 ~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~ 155 (260)
|+|+|+|+||.+........ .....+.|.. .+.+|||.+||++++|+ ++|||+||+|+|+|+|.|..
T Consensus 116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 99999999999875432211 0112356753 24689999999999999 46999999999999997644
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.93 E-value=4.4e-27 Score=194.91 Aligned_cols=140 Identities=22% Similarity=0.245 Sum_probs=110.7
Q ss_pred CCCceEEEEEcCcccccc-cc-C--CeeEeccEEEC--CeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCC-CCCcEE
Q 024960 13 LPPADYSLKIESFKLLSK-ST-V--ESFESGVFKSG--GYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHP-DGTWNV 85 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~-~~-~--~~~~S~~F~~g--g~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~-~~~w~v 85 (260)
...|+|+|+|+|||.++. .+ | ..++||+|.+| ||+|+|++||+|.. .+..+|||+||.+.+++..+ .+ |++
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~-Wp~ 150 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLP-WPF 150 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSC-SSC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCC-CcE
Confidence 478999999999999875 22 3 38999999999 99999999999986 34568999999998765432 35 999
Q ss_pred EEEEEEEEEeCcCCceeEEec--cCCCceeccC----CCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecC
Q 024960 86 NVYYKLFVYDQVSNQYLVVQD--AKAPMRRFDR----RKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKP 156 (260)
Q Consensus 86 ~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~ 156 (260)
.|+|+|+|+||.+........ .+.....|.. .+.+|||.+||++++|+ ++|||+||+|+|+|+|.|.+.
T Consensus 151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEcccc
Confidence 999999999999875432210 0112335642 34689999999999999 489999999999999987653
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.92 E-value=2.4e-25 Score=205.79 Aligned_cols=136 Identities=19% Similarity=0.388 Sum_probs=110.9
Q ss_pred CCCceEEEEEcCccccccccCCeeEeccEEECCeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCCCCCcEEEEEEEEE
Q 024960 13 LPPADYSLKIESFKLLSKSTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHPDGTWNVNVYYKLF 92 (260)
Q Consensus 13 ~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~gg~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~~~~w~v~~~~~~~ 92 (260)
...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+...+..+|||+||.|.+. ..+.+ |.++|+|+|.
T Consensus 28 ~~~~~~~w~I~nfS~~~~----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~-w~v~a~f~l~ 101 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTS-WSCHAQAVLK 101 (522)
T ss_dssp CSEEEEEEEESSCTTCCS----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSS-CBEEEEEEEE
T ss_pred cCCcEEEEEECChhhcCC----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCC-ceEEEEEEEE
Confidence 568999999999999864 79999999999999999999997522256899999999876 34556 9999999999
Q ss_pred EEeCcCCceeEEeccCCCceeccCCCCCcccccccccccccCCCCCceeCCEEEEEEEEEEecCC
Q 024960 93 VYDQVSNQYLVVQDAKAPMRRFDRRKTDWGFGKFLDLATFNEPSNGYLVDDTCAFGAEVYVVKPT 157 (260)
Q Consensus 93 l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~V~v~~~~ 157 (260)
|+|+.++.....+. ..++|.....+|||.+||++++|.++++|||+||+++|+|+|+|..++
T Consensus 102 l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 102 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp ECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred EEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 99998765443322 567887666789999999999998778999999999999999997543
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.68 E-value=1.6e-16 Score=123.78 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCCcceEEEeCCccCcCCceeecCceEeCCeEEEEEEEcCCCCC-CCCCeEEEEEEecCCccCCCCCcEEEEEEEEEec
Q 024960 168 DPADGNYRFNIPAFGSVGDTVQRSSEFTVGERNWQLVVYPAGSGA-DRGNFLTVSLKLADYQTVSRKKPVYAEFKFKIPN 246 (260)
Q Consensus 168 ~p~~~~~~~~i~~fs~l~~~~~~s~~f~vgg~~w~l~~~p~G~~~-~~~~~~s~yL~~~~~~~~~~~~~~~~~f~l~l~~ 246 (260)
.++...|+|+|.||+.+. +.+.|++|.+||++|+|.+||+|+.. +.++|||+||+|.. +.++.+|+++|+|+|+|+|
T Consensus 15 ~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~-~~~~~~w~v~a~~~l~l~~ 92 (155)
T 2foj_A 15 WRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNA-ESDSTSWSCHAQAVLKIIN 92 (155)
T ss_dssp TCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEEST-TCCCSSCEEEEEEEEEECC
T ss_pred cCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCC-CCCCCCCEEEEEEEEEEEc
Confidence 345688999999999995 77889999999999999999999865 35789999999853 4556689999999999999
Q ss_pred CCCCC
Q 024960 247 QYSRN 251 (260)
Q Consensus 247 q~~~~ 251 (260)
|.++.
T Consensus 93 ~~~~~ 97 (155)
T 2foj_A 93 YRDDE 97 (155)
T ss_dssp SSCGG
T ss_pred CCCCc
Confidence 98764
No 13
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.67 E-value=2.7e-16 Score=121.15 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=69.6
Q ss_pred CCcceEEEeCCccCcCC---ceeecCceEeCCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCccCCCCCcEEEEEEEE
Q 024960 170 ADGNYRFNIPAFGSVGD---TVQRSSEFTVGER---NWQLVVYPAGSGADRGNFLTVSLKLADYQTVSRKKPVYAEFKFK 243 (260)
Q Consensus 170 ~~~~~~~~i~~fs~l~~---~~~~s~~f~vgg~---~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~~~~~~~~~f~l~ 243 (260)
....|+|+|.||+.+++ +.+.|++|.+||| +|+|.+||+|+..+.++|||+||++.+. +.|+++|+|+|+
T Consensus 9 ~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l~ 84 (145)
T 3ivv_A 9 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 84 (145)
T ss_dssp CEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEEE
T ss_pred EEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEEE
Confidence 34779999999999873 5788999999996 9999999999887667899999999864 479999999999
Q ss_pred EecCCCCCcc
Q 024960 244 IPNQYSRNRA 253 (260)
Q Consensus 244 l~~q~~~~~~ 253 (260)
|+||.+.++.
T Consensus 85 llnq~~~~~~ 94 (145)
T 3ivv_A 85 ILNAKGEETK 94 (145)
T ss_dssp EECTTSCEEE
T ss_pred EEecCCCcee
Confidence 9999877654
No 14
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.66 E-value=3.6e-17 Score=131.95 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=73.7
Q ss_pred CCCcceEEEeCCccCcCCc-------eeecCceEe--CCeEEEEEEEcCCCCCCCCCeEEEEEEecCCccCC-CCCcEEE
Q 024960 169 PADGNYRFNIPAFGSVGDT-------VQRSSEFTV--GERNWQLVVYPAGSGADRGNFLTVSLKLADYQTVS-RKKPVYA 238 (260)
Q Consensus 169 p~~~~~~~~i~~fs~l~~~-------~~~s~~f~v--gg~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~-~~~~~~~ 238 (260)
+..+.|+|+|.+|+.++++ .+.|++|.+ ||++|+|.+||+|++.+.++|+|+||++.+++..+ .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 4568899999999998632 388999999 99999999999998876678999999998876554 6899999
Q ss_pred EEEEEEecCCCCCcc
Q 024960 239 EFKFKIPNQYSRNRA 253 (260)
Q Consensus 239 ~f~l~l~~q~~~~~~ 253 (260)
+|+|+|+||.+.++.
T Consensus 120 ~~~l~lldq~~~~~~ 134 (192)
T 1ca9_A 120 KVTLMLLDQNNREHV 134 (192)
T ss_dssp CEEEEECCTTSSCCE
T ss_pred EEEEEEECCCCCcee
Confidence 999999999887654
No 15
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.64 E-value=8.9e-17 Score=129.98 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCcceEEEeCCccCcCC-------ceeecCceEeC--CeEEEEEEEcCCCCCCCCCeEEEEEEecCCccC-CCCCcEEEE
Q 024960 170 ADGNYRFNIPAFGSVGD-------TVQRSSEFTVG--ERNWQLVVYPAGSGADRGNFLTVSLKLADYQTV-SRKKPVYAE 239 (260)
Q Consensus 170 ~~~~~~~~i~~fs~l~~-------~~~~s~~f~vg--g~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~-~~~~~~~~~ 239 (260)
..+.|+|+|.+|+.+++ +.+.|++|.+| |++|+|.+||+|++.+.++|||+||++.+++.. ...|+++|+
T Consensus 38 ~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a~ 117 (198)
T 4ghu_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (198)
T ss_dssp SSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEEE
Confidence 46889999999998863 36899999999 999999999999987778999999999876543 348999999
Q ss_pred EEEEEecCCCC
Q 024960 240 FKFKIPNQYSR 250 (260)
Q Consensus 240 f~l~l~~q~~~ 250 (260)
|+|+|+||.+.
T Consensus 118 ~~l~Lldq~~~ 128 (198)
T 4ghu_A 118 VTLMLMDQGSS 128 (198)
T ss_dssp EEEEECCCSTT
T ss_pred EEEEEEcCCCC
Confidence 99999999754
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.64 E-value=1.5e-16 Score=126.71 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCccCcCCc-------eeecCceEeC--CeEEEEEEEcCCCCCCCCCeEEEEEEecCCcc-CCCCCcEEE
Q 024960 169 PADGNYRFNIPAFGSVGDT-------VQRSSEFTVG--ERNWQLVVYPAGSGADRGNFLTVSLKLADYQT-VSRKKPVYA 238 (260)
Q Consensus 169 p~~~~~~~~i~~fs~l~~~-------~~~s~~f~vg--g~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~-~~~~~~~~~ 238 (260)
...+.|+|+|.+|+.++++ .+.|++|.|| ||+|+|.+||+|++.+.++|+|+||++.+++. ....|+++|
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 3467899999999988631 6899999999 99999999999998777799999999977653 235799999
Q ss_pred EEEEEEecCCCCC
Q 024960 239 EFKFKIPNQYSRN 251 (260)
Q Consensus 239 ~f~l~l~~q~~~~ 251 (260)
+|+|+|+||.+..
T Consensus 101 ~~~l~Lldq~~~~ 113 (178)
T 4gjh_A 101 RVTLMLLDQSGKK 113 (178)
T ss_dssp EEEEEECCTTSSC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999998643
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.64 E-value=1.8e-16 Score=124.10 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=68.2
Q ss_pred CcceEEEeCCccCcCCc-------eeecCceEeC--CeEEEEEEEcCCCCCCC-CCeEEEEEEecCCccC-CCCCcEEEE
Q 024960 171 DGNYRFNIPAFGSVGDT-------VQRSSEFTVG--ERNWQLVVYPAGSGADR-GNFLTVSLKLADYQTV-SRKKPVYAE 239 (260)
Q Consensus 171 ~~~~~~~i~~fs~l~~~-------~~~s~~f~vg--g~~w~l~~~p~G~~~~~-~~~~s~yL~~~~~~~~-~~~~~~~~~ 239 (260)
.+.|+|+|.+|+.++++ .+.|++|.+| ||+|+|.+||+|++.+. ++|+|+||++.+++.. ..+|+++|+
T Consensus 4 ~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 83 (160)
T 1lb6_A 4 NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGT 83 (160)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred CcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceeee
Confidence 46799999999988632 6889999999 99999999999987653 7899999999876544 347999999
Q ss_pred EEEEEecCCCC
Q 024960 240 FKFKIPNQYSR 250 (260)
Q Consensus 240 f~l~l~~q~~~ 250 (260)
|+|+|+||.+.
T Consensus 84 ~~l~lldq~~~ 94 (160)
T 1lb6_A 84 IRLTILDQSEA 94 (160)
T ss_dssp EEEEECCCSCT
T ss_pred EEEEEEcCCCc
Confidence 99999999764
No 18
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.63 E-value=9.8e-17 Score=126.62 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCcceEEEeCCccCcCCc-------eeecCceE--eCCeEEEEEEEcCCCCCCCCCeEEEEEEecCCccCC-CCCcEEEE
Q 024960 170 ADGNYRFNIPAFGSVGDT-------VQRSSEFT--VGERNWQLVVYPAGSGADRGNFLTVSLKLADYQTVS-RKKPVYAE 239 (260)
Q Consensus 170 ~~~~~~~~i~~fs~l~~~-------~~~s~~f~--vgg~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~-~~~~~~~~ 239 (260)
..+.|+|+|.+|+.+++. .+.|++|. +||++|+|.+||+|++.+.++|+|+||++.+++..+ .+|+++|+
T Consensus 17 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~~ 96 (168)
T 1d00_A 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 96 (168)
T ss_dssp SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEEE
Confidence 457899999999998631 27899996 899999999999998876678999999998876554 68999999
Q ss_pred EEEEEecCCCCCcc
Q 024960 240 FKFKIPNQYSRNRA 253 (260)
Q Consensus 240 f~l~l~~q~~~~~~ 253 (260)
|+|+|+||.+.+++
T Consensus 97 ~~l~ll~q~~~~~~ 110 (168)
T 1d00_A 97 VTLMLLDQNNREHV 110 (168)
T ss_dssp EEEEECCTTSSCCE
T ss_pred EEEEEECCCCCccc
Confidence 99999999887654
No 19
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.62 E-value=1.6e-16 Score=128.08 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCcceEEEeCCccCcCCc-------eeecCceEeC--CeEEEEEEEcCCCCCCCCCeEEEEEEecCCccCC-CCCcEEEE
Q 024960 170 ADGNYRFNIPAFGSVGDT-------VQRSSEFTVG--ERNWQLVVYPAGSGADRGNFLTVSLKLADYQTVS-RKKPVYAE 239 (260)
Q Consensus 170 ~~~~~~~~i~~fs~l~~~-------~~~s~~f~vg--g~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~-~~~~~~~~ 239 (260)
..+.|+|+|.+||.++++ .+.|++|.|| ||+|+|.+||+|++.+.++|+|+||++.+++.++ .+|+++|+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 357899999999998621 4889999999 9999999999999876789999999998776543 47999999
Q ss_pred EEEEEecCCCC
Q 024960 240 FKFKIPNQYSR 250 (260)
Q Consensus 240 f~l~l~~q~~~ 250 (260)
|+|+|+||.+.
T Consensus 118 ~~l~lldq~~~ 128 (192)
T 2gkw_A 118 VTLMLMDQGSS 128 (192)
T ss_dssp EEEEECCCSTT
T ss_pred EEEEEECCCCC
Confidence 99999999876
No 20
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.59 E-value=3.8e-16 Score=129.14 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=71.3
Q ss_pred CCcceEEEeCCccCcCC-------ceeecCceEeC--CeEEEEEEEcCCCCCCCCCeEEEEEEecCCccCC-CCCcEEEE
Q 024960 170 ADGNYRFNIPAFGSVGD-------TVQRSSEFTVG--ERNWQLVVYPAGSGADRGNFLTVSLKLADYQTVS-RKKPVYAE 239 (260)
Q Consensus 170 ~~~~~~~~i~~fs~l~~-------~~~~s~~f~vg--g~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~-~~~~~~~~ 239 (260)
..+.|+|+|.+||.++. ..+.|++|.|| ||+|+|.+||+|++.+.++|+|+||++.+++..+ ..|++.|+
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence 45789999999998863 16889999999 9999999999999877789999999998776553 48999999
Q ss_pred EEEEEecCCCCC
Q 024960 240 FKFKIPNQYSRN 251 (260)
Q Consensus 240 f~l~l~~q~~~~ 251 (260)
|+|+|+||.+.+
T Consensus 154 ~~l~lldq~~~~ 165 (228)
T 1flk_A 154 VTLMLMDQGSSR 165 (228)
T ss_dssp EEEEECCCSSSC
T ss_pred EEEEEEcCCCCc
Confidence 999999998765
No 21
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=131.27 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=66.3
Q ss_pred CCCcceEEEeCCccCcCCceeecCceEeCCeEEEEEEEcCCCCCC-CCCeEEEEEEecCCccCCCCCcEEEEEEEEEecC
Q 024960 169 PADGNYRFNIPAFGSVGDTVQRSSEFTVGERNWQLVVYPAGSGAD-RGNFLTVSLKLADYQTVSRKKPVYAEFKFKIPNQ 247 (260)
Q Consensus 169 p~~~~~~~~i~~fs~l~~~~~~s~~f~vgg~~w~l~~~p~G~~~~-~~~~~s~yL~~~~~~~~~~~~~~~~~f~l~l~~q 247 (260)
++...|+|+|.|||.++ +.+.|++|.|||++|+|.+||+|+..+ .++|||+||++.+. ..+.+|.++|+|+|+|+||
T Consensus 28 ~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcC-CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 34578999999999987 478899999999999999999997543 56899999999876 5567899999999999999
Q ss_pred CCCCc
Q 024960 248 YSRNR 252 (260)
Q Consensus 248 ~~~~~ 252 (260)
.+++.
T Consensus 106 ~~~~~ 110 (522)
T 2f1z_A 106 RDDEK 110 (522)
T ss_dssp TCGGG
T ss_pred CCCcc
Confidence 87543
No 22
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.50 E-value=2.7e-14 Score=131.87 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred cccCCCceEEEEEcCccccccccCCeeEeccEEE-CCeeeEEEEeeCCCCCCCCCCcEEEEEEecCCCCCCCCCcEE-EE
Q 024960 10 KRSLPPADYSLKIESFKLLSKSTVESFESGVFKS-GGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHPDGTWNV-NV 87 (260)
Q Consensus 10 ~~~~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~-gg~~W~l~~yP~G~~~~~~~~~lSv~L~l~~~~~~~~~~w~v-~~ 87 (260)
+++..|..+.|+|.||+++...++..++||+|.. .||+++|.+||++ ..|+|+|++|.+++....-.|++ .-
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence 4678899999999999998765567899999974 6999999999975 35899999999986533222999 57
Q ss_pred EEEEEEEeCcCCceeEEe-----ccC------CCce------------eccC-----CCCCcccccccccccccCCCCCc
Q 024960 88 YYKLFVYDQVSNQYLVVQ-----DAK------APMR------------RFDR-----RKTDWGFGKFLDLATFNEPSNGY 139 (260)
Q Consensus 88 ~~~~~l~n~~~~~~~~~~-----~~~------~~~~------------~F~~-----~~~~~G~~~Fi~~~~L~~~~~~y 139 (260)
+++++|+||+......+. .++ .... .|.. ++.+|||..||+++.|. +..|
T Consensus 474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~f 551 (592)
T 4gwm_A 474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDF 551 (592)
T ss_dssp EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTS
T ss_pred EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCc
Confidence 899999999865433221 000 0001 1221 13468999999999998 6789
Q ss_pred eeCCEEEEEEEEEEecCCCc
Q 024960 140 LVDDTCAFGAEVYVVKPTDS 159 (260)
Q Consensus 140 l~dD~l~i~~~V~v~~~~~~ 159 (260)
|+||.|.|.++|+-+.....
T Consensus 552 iK~d~~~i~~~~eD~~~l~~ 571 (592)
T 4gwm_A 552 IKGDDVYILLTVEDISHLNS 571 (592)
T ss_dssp SBTTBEEEEEEEEECGGGSS
T ss_pred ccCCeEEEEEEEEeCccccc
Confidence 99999999999988876543
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.48 E-value=1e-13 Score=119.71 Aligned_cols=79 Identities=30% Similarity=0.477 Sum_probs=64.2
Q ss_pred cceEEEeCCccCcC---CceeecCceEeCCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCccCCCCCcEEEEEEEEEe
Q 024960 172 GNYRFNIPAFGSVG---DTVQRSSEFTVGER---NWQLVVYPAGSGADRGNFLTVSLKLADYQTVSRKKPVYAEFKFKIP 245 (260)
Q Consensus 172 ~~~~~~i~~fs~l~---~~~~~s~~f~vgg~---~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~~~~~~~~~f~l~l~ 245 (260)
..|+|+|.||+.++ .+.+.|++|.+||| +|+|.+||+|++...++|+|+||++.+. +.|+++|+|+|+|+
T Consensus 7 ~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l~ 82 (312)
T 3hqi_A 7 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSIL 82 (312)
T ss_dssp EEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEEE
T ss_pred EEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEEE
Confidence 56999999999986 35788999999996 9999999999887678999999999764 36889999999999
Q ss_pred cCCCCCccc
Q 024960 246 NQYSRNRAG 254 (260)
Q Consensus 246 ~q~~~~~~~ 254 (260)
||.+..+..
T Consensus 83 ~~~~~~~~~ 91 (312)
T 3hqi_A 83 NAKGEETKA 91 (312)
T ss_dssp CTTSCEEEE
T ss_pred eCCCCcccc
Confidence 998765443
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.32 E-value=1.5e-05 Score=73.77 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=62.7
Q ss_pred CCCcceEEEeCCccCcCC---ceeecCceEe-CCeEEEEEEEcCCCCCCCCCeEEEEEEecCCccCC-CCCcE-EEEEEE
Q 024960 169 PADGNYRFNIPAFGSVGD---TVQRSSEFTV-GERNWQLVVYPAGSGADRGNFLTVSLKLADYQTVS-RKKPV-YAEFKF 242 (260)
Q Consensus 169 p~~~~~~~~i~~fs~l~~---~~~~s~~f~v-gg~~w~l~~~p~G~~~~~~~~~s~yL~~~~~~~~~-~~~~~-~~~f~l 242 (260)
-+++.+.|+|+||+++++ ..+.|+.|.- .|++|.|.+||+| +.|+|||++|..++.+. ..|++ +-+++|
T Consensus 403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~ 477 (592)
T 4gwm_A 403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM 477 (592)
T ss_dssp SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence 356779999999999984 4678888875 6999999999976 46899999999887554 58998 578999
Q ss_pred EEecCCC
Q 024960 243 KIPNQYS 249 (260)
Q Consensus 243 ~l~~q~~ 249 (260)
.||||..
T Consensus 478 ~llDQ~p 484 (592)
T 4gwm_A 478 TLLDQNP 484 (592)
T ss_dssp EECCCCS
T ss_pred EEeCCCC
Confidence 9999953
No 25
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=50.74 E-value=17 Score=26.19 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=23.7
Q ss_pred ceEeCCeEEEEEEEcCCCCCCCCCeEEEEEEecC
Q 024960 193 EFTVGERNWQLVVYPAGSGADRGNFLTVSLKLAD 226 (260)
Q Consensus 193 ~f~vgg~~w~l~~~p~G~~~~~~~~~s~yL~~~~ 226 (260)
.|.|||+..+|+.||. +++.+|-.+..
T Consensus 28 SL~Vd~~t~hite~p~-------~~LlmFs~L~~ 54 (130)
T 1jya_A 28 GVKVGEFACHITEHPV-------GQILMFTLPSL 54 (130)
T ss_dssp EEEETTEEEEEEECST-------TEEEEEECCCC
T ss_pred EEEECCeEEEEEecCC-------CeEEEEeccCc
Confidence 6899999999999999 48999987754
No 26
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=45.55 E-value=6.7 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=22.8
Q ss_pred ccCCCceEEEEEcCccccccccCCeeEeccEEE
Q 024960 11 RSLPPADYSLKIESFKLLSKSTVESFESGVFKS 43 (260)
Q Consensus 11 ~~~~~g~~~w~I~~fs~~~~~~~~~~~S~~F~~ 43 (260)
+-...|-+.|+|.+|+..+.. |..+.|-.|.+
T Consensus 7 pv~~~gd~vwkIs~F~~RKpe-Gty~nsvsFnI 38 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKPE-GTYYNSLGFNI 38 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEETT-SSSCSEEEEEE
T ss_pred ccccCCceEEEeeeeeeEcCC-CCceeeEEEEE
Confidence 445678899999999988653 45566666654
No 27
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=28.59 E-value=7.3 Score=28.11 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=23.7
Q ss_pred cccCCCCcceEEEeCCccCcC-CceeecCceEeCCeEEEE
Q 024960 165 LVSDPADGNYRFNIPAFGSVG-DTVQRSSEFTVGERNWQL 203 (260)
Q Consensus 165 ~i~~p~~~~~~~~i~~fs~l~-~~~~~s~~f~vgg~~w~l 203 (260)
.+++|++.. ..++..+. ++.++|++|.|+|..++.
T Consensus 4 ~v~~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~~~~ 39 (145)
T 4eoz_A 4 MVKVPECRL----ADELGGLWENSRFTDCCLCVAGQEFQA 39 (145)
T ss_dssp -CCCCCCCH----HHHHHHHHHHTCSCCEEEEETTEEEEE
T ss_pred cccCChHHH----HHHHHHHHhCCCCcceEEEECCEEEEe
Confidence 356676544 55666655 357889999999987654
Done!