Query 024961
Match_columns 260
No_of_seqs 278 out of 1132
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1778 CREB binding protein/P 100.0 8.7E-36 1.9E-40 276.7 7.1 223 1-233 94-318 (319)
2 smart00551 ZnF_TAZ TAZ zinc fi 99.9 1E-22 2.2E-27 154.5 8.3 76 109-202 2-79 (79)
3 PHA02790 Kelch-like protein; P 99.6 2.4E-15 5.3E-20 146.8 8.0 76 2-77 90-167 (480)
4 PF02135 zf-TAZ: TAZ zinc fing 99.5 6.6E-15 1.4E-19 110.1 3.9 72 113-201 2-75 (75)
5 PHA03098 kelch-like protein; P 99.5 4.4E-14 9.5E-19 138.4 9.8 116 2-124 75-197 (534)
6 PHA02713 hypothetical protein; 99.5 7.9E-14 1.7E-18 138.8 10.0 76 2-77 93-168 (557)
7 KOG4441 Proteins containing BT 99.5 2.3E-13 5E-18 136.0 9.8 108 2-109 104-215 (571)
8 KOG4350 Uncharacterized conser 98.4 9.8E-07 2.1E-11 84.9 7.8 95 2-96 115-219 (620)
9 KOG0783 Uncharacterized conser 98.3 1.5E-06 3.2E-11 89.3 6.8 68 2-69 785-852 (1267)
10 PF07707 BACK: BTB And C-termi 98.2 2.9E-06 6.4E-11 65.0 4.8 40 37-76 1-40 (103)
11 KOG4591 Uncharacterized conser 98.1 4.6E-06 9.9E-11 73.9 5.4 82 3-88 137-218 (280)
12 KOG4682 Uncharacterized conser 97.9 2.6E-05 5.7E-10 74.9 6.5 73 3-75 141-213 (488)
13 smart00875 BACK BTB And C-term 97.8 4.6E-05 1E-09 57.5 5.8 41 37-77 1-41 (101)
14 KOG2075 Topoisomerase TOP1-int 97.5 0.00031 6.7E-09 68.9 7.4 75 3-77 188-263 (521)
15 KOG1987 Speckle-type POZ prote 96.4 0.0063 1.4E-07 55.5 5.8 85 7-92 176-262 (297)
16 PF02135 zf-TAZ: TAZ zinc fing 94.9 0.056 1.2E-06 40.1 4.9 43 117-177 32-74 (75)
17 smart00551 ZnF_TAZ TAZ zinc fi 93.2 0.17 3.7E-06 38.4 4.5 43 117-177 35-77 (79)
18 PF01466 Skp1: Skp1 family, di 92.2 0.23 5E-06 37.1 4.1 44 3-46 14-60 (78)
19 KOG2075 Topoisomerase TOP1-int 89.3 0.7 1.5E-05 46.0 5.5 61 31-94 184-249 (521)
20 PF11822 DUF3342: Domain of un 88.5 0.18 4E-06 47.6 0.9 54 17-71 58-111 (317)
21 PF00651 BTB: BTB/POZ domain; 87.3 0.9 2E-05 34.5 4.0 30 34-63 81-110 (111)
22 KOG0511 Ankyrin repeat protein 81.0 4.4 9.5E-05 39.6 6.4 82 3-84 363-451 (516)
23 PHA03098 kelch-like protein; P 76.1 5.3 0.00012 39.4 5.6 34 31-64 72-105 (534)
24 PHA02713 hypothetical protein; 66.1 5.5 0.00012 40.2 3.2 42 23-64 81-123 (557)
25 PHA02790 Kelch-like protein; P 65.5 5.6 0.00012 39.2 3.1 40 24-63 77-119 (480)
26 smart00875 BACK BTB And C-term 59.8 18 0.00039 26.5 4.3 26 6-31 2-27 (101)
27 PF11822 DUF3342: Domain of un 56.6 5.1 0.00011 38.0 1.0 29 3-31 75-103 (317)
28 KOG1724 SCF ubiquitin ligase, 55.9 20 0.00043 30.8 4.4 30 3-32 98-127 (162)
29 PF07707 BACK: BTB And C-termi 54.6 26 0.00056 26.1 4.5 26 6-31 2-27 (103)
30 KOG2716 Polymerase delta-inter 43.2 25 0.00055 31.9 3.2 30 2-31 75-104 (230)
31 smart00225 BTB Broad-Complex, 40.5 25 0.00054 24.4 2.3 25 32-56 65-89 (90)
32 KOG1493 Anaphase-promoting com 36.2 19 0.0004 27.5 1.1 43 139-182 30-82 (84)
33 PF03852 Vsr: DNA mismatch end 36.1 11 0.00023 28.6 -0.3 32 227-259 8-39 (75)
34 KOG4441 Proteins containing BT 35.5 33 0.00072 34.9 3.0 33 31-63 101-133 (571)
35 PF01466 Skp1: Skp1 family, di 35.3 93 0.002 22.9 4.7 39 26-66 7-45 (78)
36 TIGR02183 GRXA Glutaredoxin, G 34.0 27 0.00059 26.0 1.7 17 171-187 8-24 (86)
37 COG5201 SKP1 SCF ubiquitin lig 28.9 57 0.0012 27.5 2.9 31 3-33 93-123 (158)
38 PF03000 NPH3: NPH3 family; I 28.6 3.2E+02 0.007 25.1 8.1 115 4-126 91-234 (258)
39 PRK11200 grxA glutaredoxin 1; 23.8 50 0.0011 24.2 1.5 15 171-185 9-23 (85)
40 cd03029 GRX_hybridPRX5 Glutare 21.9 54 0.0012 23.0 1.4 15 171-185 9-23 (72)
41 PF00462 Glutaredoxin: Glutare 20.3 63 0.0014 21.8 1.4 14 171-184 7-20 (60)
No 1
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=100.00 E-value=8.7e-36 Score=276.69 Aligned_cols=223 Identities=42% Similarity=0.672 Sum_probs=200.3
Q ss_pred ChhHHHHHHHhhhccCchhHHHHHHHHHhh-cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhhhc
Q 024961 1 MEKYGIHLLALSHVYSVPQLKQRCTKGLGE-RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 79 (260)
Q Consensus 1 me~~v~~LL~AAd~yqI~~LK~~Ce~~L~~-~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~~~ 79 (260)
|...+.+|+.+.+.|.|+.++..|..-+.. .++..|++.++.++..|+.+.|..++...|...|..+.+|++|..+...
T Consensus 94 ~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 94 MVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred HHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence 456788999999999999999999999988 4899999999999999999999999999999999999999999999888
Q ss_pred CchHHHHHHHhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhCCccCCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 024961 80 DPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLI 159 (260)
Q Consensus 80 ~P~L~~eil~~v~~~d~~~~~~~r~r~e~~v~~ql~~am~~L~Ha~~~~C~~~~~~~~~~~~~~~~C~~~~~C~~lk~l~ 159 (260)
.|.+.. ...+...........+...++..+.|+.++|.+ |++||.++||..+...+++++|. |++|.+||+|+
T Consensus 174 ~c~~~~--~~~~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~-~~~C~~~k~li 246 (319)
T KOG1778|consen 174 ICKLEV--LTAWHCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCS-YPSCNGLKRLI 246 (319)
T ss_pred cccccc--ccccccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCC-CchhHHHHHHH
Confidence 888776 344333333444445555666668999999999 99999999999999887789999 99999999999
Q ss_pred HHHhhcCccCCCCCcchHHHHHHHHHHHhcCCCCCCCCCCcchhhHHHHhhhhcC-chhHHHHHHHHHHHhhhhh
Q 024961 160 RHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKG-DDGRWRLLVKKVVSAKTIS 233 (260)
Q Consensus 160 ~H~~~C~~r~~ggC~~Ckr~~~Ll~lHa~~C~~~~~C~VP~C~~~k~~~~~~~~~-~~~~w~llv~~v~~~~~~~ 233 (260)
+|+.+|+.| |||++||+||+|++|||++|++++ |+||+|+++|+++++++++ ++.+|++++++|..++++.
T Consensus 247 rH~~~Ck~R--~gC~iCk~m~~L~~lha~~c~~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T KOG1778|consen 247 RHFRGCKLR--GGCPICKRLWQLLELHARHCDDSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKADG 318 (319)
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHHccccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhccc
Confidence 999999999 999999999999999999999998 9999999999999998875 9999999999999988764
No 2
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=99.88 E-value=1e-22 Score=154.50 Aligned_cols=76 Identities=37% Similarity=0.813 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHhhhCCccCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCcc--CCCCCcchHHHHHHHHHH
Q 024961 109 GLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKR--VNGGCLRCKRMWQLLRLH 186 (260)
Q Consensus 109 ~v~~ql~~am~~L~Ha~~~~C~~~~~~~~~~~~~~~~C~~~~~C~~lk~l~~H~~~C~~r--~~ggC~~Ckr~~~Ll~lH 186 (260)
.+|.||+++|++|+||++ |+.+ +++|+ +++|.+||.|++|+++|+.+ ++|||+.||+||+ |
T Consensus 2 ~~~~~lq~~l~~L~Ha~~--C~~~----------~~~C~-~~~C~~~k~L~~H~~~C~~~~C~~~~C~~ck~~~~----H 64 (79)
T smart00551 2 TRYKQLQRWLELLVHARR--CKAR----------EAKCQ-YPNCKTMKKLLRHMDSCKVRKCKYGYCASCKQLWQ----H 64 (79)
T ss_pred cHHHHHHHHHHHHHHHHh--CCCC----------CCCCC-CchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----H
Confidence 468999999999999999 9854 37899 99999999999999999999 8899999999999 9
Q ss_pred HhcCCCCCCCCCCcch
Q 024961 187 SSMCEQSDSCRVPLCR 202 (260)
Q Consensus 187 a~~C~~~~~C~VP~C~ 202 (260)
+++|++.+ |+||+|+
T Consensus 65 ~k~C~~~~-C~Vc~c~ 79 (79)
T smart00551 65 SKHCKDSN-CPVCKCV 79 (79)
T ss_pred HHhcCCCC-CCCCCCC
Confidence 99999987 9999985
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.58 E-value=2.4e-15 Score=146.83 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=73.2
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcc--hhhhHhh
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKT--EGWKFLQ 77 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~t--e~f~~L~ 77 (260)
++||++||.||++|||+.|++.|++||.++|+++||++|+.+|+.|++++|.+.|.+||.+||.+|+++ ++|..|.
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999987 8998875
No 4
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=99.52 E-value=6.6e-15 Score=110.07 Aligned_cols=72 Identities=36% Similarity=0.806 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhCCccCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCccC--CCCCcchHHHHHHHHHHHhcC
Q 024961 113 QLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRV--NGGCLRCKRMWQLLRLHSSMC 190 (260)
Q Consensus 113 ql~~am~~L~Ha~~~~C~~~~~~~~~~~~~~~~C~~~~~C~~lk~l~~H~~~C~~r~--~ggC~~Ckr~~~Ll~lHa~~C 190 (260)
|+++.|++|.||.. |+..+ .++|. ++.|.+||.|+.|+.+|..+. .++|..||++|. |++.|
T Consensus 2 ~~~~~L~~L~Ha~~--C~~~~---------~~~C~-~~~C~~~K~ll~H~~~C~~~~C~~~~C~~~k~ll~----H~~~C 65 (75)
T PF02135_consen 2 QLQRWLELLLHASS--CRDPE---------HPNCS-LPHCRKMKKLLKHMRTCRNRDCPVPGCQSCKRLLS----HARSC 65 (75)
T ss_dssp HHHHHHHHHHHHHH--HHHHH---------CTT-S-STTHHHHHHHHHHHCCSSSCCSSCCTHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHhH--CcCCC---------CCCCC-CcccHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HHhcC
Confidence 68999999999998 98310 28999 999999999999999999887 689999999998 99999
Q ss_pred CCCCCCCCCcc
Q 024961 191 EQSDSCRVPLC 201 (260)
Q Consensus 191 ~~~~~C~VP~C 201 (260)
++.+ |+||+|
T Consensus 66 ~~~~-C~vc~C 75 (75)
T PF02135_consen 66 KDSD-CPVCFC 75 (75)
T ss_dssp TSTT-SSSHHH
T ss_pred CCCC-CCCCCC
Confidence 9987 999987
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.51 E-value=4.4e-14 Score=138.41 Aligned_cols=116 Identities=10% Similarity=0.168 Sum_probs=90.6
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhhhcCc
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDP 81 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~~~~P 81 (260)
++++++||.||++|+|+.|+..|++||.+.|+++||++++.+|+.|+++.|.+.|.+||.+||.+|.++++|..|. +
T Consensus 75 ~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~---~ 151 (534)
T PHA03098 75 SNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLS---K 151 (534)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCC---H
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999874 2
Q ss_pred hHHHHHHHh----hHHHHH---hhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 024961 82 WLELQILQF----MDEAES---RIKRTRRRRQEQGLYLQLSEAMECLEHI 124 (260)
Q Consensus 82 ~L~~eil~~----v~~~d~---~~~~~~r~r~e~~v~~ql~~am~~L~Ha 124 (260)
+...++|.. +...+. ...+|.+++.+.+ ....-++|.|+
T Consensus 152 ~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r----~~~~~~ll~~v 197 (534)
T PHA03098 152 NELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNK----YKDICLILKVL 197 (534)
T ss_pred HHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhh----HhHHHHHHhhc
Confidence 233333322 111111 4567887765544 22233455555
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.49 E-value=7.9e-14 Score=138.78 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhh
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ 77 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~ 77 (260)
++||++||.||++|||+.|++.|++||.+.|+++||++|+.+|..+.+..|.+.|.+||.+||.+|+++++|..|.
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTV 168 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998753
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.45 E-value=2.3e-13 Score=136.01 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=85.7
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhhh--c
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQD--H 79 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~~--~ 79 (260)
++||++||.||++|||+.+++.|.+||.+.|+++||++|..||+.|++++|...+..||.+||.+|.++++|+.|.. -
T Consensus 104 ~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l 183 (571)
T KOG4441|consen 104 EDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEEL 183 (571)
T ss_pred hHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998631 1
Q ss_pred CchHHHHHHHhhHHHH--Hhhhhhhhhhhhhh
Q 024961 80 DPWLELQILQFMDEAE--SRIKRTRRRRQEQG 109 (260)
Q Consensus 80 ~P~L~~eil~~v~~~d--~~~~~~~r~r~e~~ 109 (260)
.--|..|.+..-.+.+ +...+|.+++.+.|
T Consensus 184 ~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R 215 (571)
T KOG4441|consen 184 IGLLSSDDLNVDSEEEVFEAAMRWVKHDFEER 215 (571)
T ss_pred HhhccccCCCcCCHHHHHHHHHHHHhcCHhhH
Confidence 1111111121111111 15567887775554
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.37 E-value=9.8e-07 Score=84.87 Aligned_cols=95 Identities=24% Similarity=0.240 Sum_probs=84.2
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhh----
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ---- 77 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~---- 77 (260)
|+...+.|.+|++|+++.|...-.+||.+-|..+|++-|+..|.+|+.++|...|..|+.+|.+++...++|..|+
T Consensus 115 ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL 194 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSL 194 (620)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ------hcCchHHHHHHHhhHHHHH
Q 024961 78 ------DHDPWLELQILQFMDEAES 96 (260)
Q Consensus 78 ------~~~P~L~~eil~~v~~~d~ 96 (260)
+++-.++.+|+-++..|-.
T Consensus 195 ~e~l~RDsFfApE~~IFlAv~~W~~ 219 (620)
T KOG4350|consen 195 KELLARDSFFAPELKIFLAVRSWHQ 219 (620)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHh
Confidence 4455566666666666554
No 9
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.27 E-value=1.5e-06 Score=89.31 Aligned_cols=68 Identities=19% Similarity=0.450 Sum_probs=64.6
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhc
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEK 69 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~ 69 (260)
++++.++|..||.|.|..||.+||..|.+.|+..|+..++.||-+|+|.+|+..|++||..|+..+..
T Consensus 785 ~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 785 SDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999877753
No 10
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.15 E-value=2.9e-06 Score=64.97 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHh
Q 024961 37 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFL 76 (260)
Q Consensus 37 ~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L 76 (260)
|++++.+|+.|+.++|...|.+||..||.+|.++++|..|
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L 40 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL 40 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC
Confidence 7899999999999999999999999999999999999885
No 11
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.10 E-value=4.6e-06 Score=73.91 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=71.7
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhhhcCch
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPW 82 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~~~~P~ 82 (260)
+...+|..+|+.|+++.||..|+.-|...++++||+.++++|+..++.+|...|-..|+.++.++ ..++|-.| .|.
T Consensus 137 ~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqM---s~a 212 (280)
T KOG4591|consen 137 EFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQM---SAA 212 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhc---cHH
Confidence 57889999999999999999999999999999999999999999999999999999999999887 45667654 355
Q ss_pred HHHHHH
Q 024961 83 LELQIL 88 (260)
Q Consensus 83 L~~eil 88 (260)
|...++
T Consensus 213 LLYklI 218 (280)
T KOG4591|consen 213 LLYKLI 218 (280)
T ss_pred HHHHHH
Confidence 544443
No 12
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.87 E-value=2.6e-05 Score=74.94 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhH
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKF 75 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~ 75 (260)
+-|..+|++|+.+++++|.+.|.+.|.+.|+++|++..+..|..|+...+++.|.+++..||-.+..+.-+..
T Consensus 141 ~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~e 213 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKE 213 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999999987763333
No 13
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.82 E-value=4.6e-05 Score=57.50 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhh
Q 024961 37 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ 77 (260)
Q Consensus 37 ~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~ 77 (260)
|++++.+|+.|+++.|...|..||.+||..++++++|..|.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~ 41 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELS 41 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCC
Confidence 57899999999999999999999999999999999998763
No 14
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=97.47 E-value=0.00031 Score=68.91 Aligned_cols=75 Identities=29% Similarity=0.418 Sum_probs=69.8
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHH-HhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhh
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQL-ARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ 77 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~l-A~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~ 77 (260)
+++..+|.+|++|.++.|.+.|.+||..++.++|.+-.+-- |.+++-++|...|++-|..+|.+....|+|....
T Consensus 188 dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 188 DTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 78999999999999999999999999999999998776666 9999999999999999999999999999998754
No 15
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0063 Score=55.47 Aligned_cols=85 Identities=21% Similarity=0.031 Sum_probs=74.9
Q ss_pred HHHHhhhccCchhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHH--hhhhhhcchhhhHhhhcCchHH
Q 024961 7 HLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAAS--RFKAVEKTEGWKFLQDHDPWLE 84 (260)
Q Consensus 7 ~LL~AAd~yqI~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~--nf~~V~~te~f~~L~~~~P~L~ 84 (260)
.++++|+.|..+.|+..|...|...++..|+...+++|+.++...+...+..++.. ++..+..+.++..+.+. |.+.
T Consensus 176 ~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~-~~~~ 254 (297)
T KOG1987|consen 176 PDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK-KDLW 254 (297)
T ss_pred hhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh-HHHH
Confidence 78899999999999999999999999999999999999999999999999999998 88899888888766655 6666
Q ss_pred HHHHHhhH
Q 024961 85 LQILQFMD 92 (260)
Q Consensus 85 ~eil~~v~ 92 (260)
.++.....
T Consensus 255 ~~~~~~~~ 262 (297)
T KOG1987|consen 255 YEIRLQEL 262 (297)
T ss_pred HHHHHHHH
Confidence 66655433
No 16
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=94.94 E-value=0.056 Score=40.07 Aligned_cols=43 Identities=30% Similarity=0.673 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhCCccCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCccCCCCCcchH
Q 024961 117 AMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCK 177 (260)
Q Consensus 117 am~~L~Ha~~~~C~~~~~~~~~~~~~~~~C~~~~~C~~lk~l~~H~~~C~~r~~ggC~~Ck 177 (260)
.-.+|.|+-. |+ ...|+ ++.|...|.|+.|...|+.. +|++|.
T Consensus 32 ~K~ll~H~~~--C~------------~~~C~-~~~C~~~k~ll~H~~~C~~~---~C~vc~ 74 (75)
T PF02135_consen 32 MKKLLKHMRT--CR------------NRDCP-VPGCQSCKRLLSHARSCKDS---DCPVCF 74 (75)
T ss_dssp HHHHHHHHCC--SS------------SCCSS-CCTHHHHHHHHHHHHHHTST---TSSSHH
T ss_pred HHHHHHHHHH--cC------------CCCCC-CCCCHHHHHHHHHHhcCCCC---CCCCCC
Confidence 4489999966 98 34499 99999999999999999744 699884
No 17
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=93.15 E-value=0.17 Score=38.36 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhCCccCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCccCCCCCcchH
Q 024961 117 AMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCK 177 (260)
Q Consensus 117 am~~L~Ha~~~~C~~~~~~~~~~~~~~~~C~~~~~C~~lk~l~~H~~~C~~r~~ggC~~Ck 177 (260)
.-.++.|..+ |. ...|. ++.|..=|+++.|...|... +|++|.
T Consensus 35 ~k~L~~H~~~--C~------------~~~C~-~~~C~~ck~~~~H~k~C~~~---~C~Vc~ 77 (79)
T smart00551 35 MKKLLRHMDS--CK------------VRKCK-YGYCASCKQLWQHSKHCKDS---NCPVCK 77 (79)
T ss_pred HHHHHHHHHH--cC------------CCCCC-CCCCHHHHHHHHHHHhcCCC---CCCCCC
Confidence 3378999977 98 46899 99999999999999999854 599873
No 18
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.18 E-value=0.23 Score=37.12 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=29.8
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcCC---cccHHHHHHHHhh
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERLT---IDNVVDVLQLARL 46 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls---~eN~l~il~lA~~ 46 (260)
+.+.+|+.||++++|+.|...|+.++...|. ++-+-.++.+...
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d 60 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEND 60 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCC
Confidence 5678999999999999999999999877654 4444444444433
No 19
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=89.34 E-value=0.7 Score=45.97 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=50.8
Q ss_pred cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHhhh-----cCchHHHHHHHhhHHH
Q 024961 31 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQD-----HDPWLELQILQFMDEA 94 (260)
Q Consensus 31 ~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L~~-----~~P~L~~eil~~v~~~ 94 (260)
.+.+|||+.++.+|+.|..+.|...|.+||..|.. ...+|..|.+ ..|+|..-+++.+...
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~---~~naf~~L~q~A~lf~ep~Li~~c~e~id~~ 249 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLM---ADNAFLELFQRAKLFDEPSLISICLEVIDKS 249 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhH
Confidence 48999999999999999999999999999998853 4467777765 6788888887776554
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=88.50 E-value=0.18 Score=47.60 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcch
Q 024961 17 VPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTE 71 (260)
Q Consensus 17 I~~LK~~Ce~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te 71 (260)
++.|...+.. -.-.|+++||+.|+.=|+....+.|.+.|+.|+..|+.+|+.+.
T Consensus 58 F~WLm~yv~~-~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 58 FEWLMRYVKG-EPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred HHHHHHHhhc-CCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 3455555555 22259999999999999999999999999999999999999865
No 21
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=87.33 E-value=0.9 Score=34.48 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 024961 34 IDNVVDVLQLARLCDAPDLYLRCMKLAASR 63 (260)
Q Consensus 34 ~eN~l~il~lA~~~~a~~Lk~~c~~FI~~n 63 (260)
.+|+.+++.+|+.|+.+.|...|.+|+.+|
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 667777777777777777777777776654
No 22
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=81.03 E-value=4.4 Score=39.63 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=66.3
Q ss_pred hHHHHHHHhhhccCch--h-HHHHHHHHHhhc---CCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhhhhcchhhhHh
Q 024961 3 KYGIHLLALSHVYSVP--Q-LKQRCTKGLGER---LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFL 76 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~--~-LK~~Ce~~L~~~---Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~V~~te~f~~L 76 (260)
+.+.++|-.||.+.+. + ||.+-...|.+. ++.-||.+|+.++-...+++|...+..|++.|+..+...++|...
T Consensus 363 ~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 363 DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 3566777788887665 2 788877777764 778899999999999999999999999999999999999888754
Q ss_pred -hhcCchHH
Q 024961 77 -QDHDPWLE 84 (260)
Q Consensus 77 -~~~~P~L~ 84 (260)
..+-|.+.
T Consensus 443 ~~~s~~ri~ 451 (516)
T KOG0511|consen 443 LRTSVPRIP 451 (516)
T ss_pred HHhccchhh
Confidence 55555443
No 23
>PHA03098 kelch-like protein; Provisional
Probab=76.08 E-value=5.3 Score=39.35 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=31.9
Q ss_pred cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 024961 31 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 64 (260)
Q Consensus 31 ~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf 64 (260)
.|+.+|+.+++.+|+.|..+.|+..|.+|+.+++
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999765
No 24
>PHA02713 hypothetical protein; Provisional
Probab=66.06 E-value=5.5 Score=40.18 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHhh-cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 024961 23 RCTKGLGE-RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 64 (260)
Q Consensus 23 ~Ce~~L~~-~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf 64 (260)
.--+|+-. .|+.+|+.+++..|+.+..+.|+..|.+|+.+++
T Consensus 81 ~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 81 NIVQYLYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 33444433 4999999999999999999999999999999764
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=65.51 E-value=5.6 Score=39.16 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHhh---cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 024961 24 CTKGLGE---RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASR 63 (260)
Q Consensus 24 Ce~~L~~---~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~n 63 (260)
--+|+-. .|+.+||-+++..|..+..+.+.+.|.+|+.++
T Consensus 77 lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 77 IVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred HHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 3445433 489999999999999999999999999999976
No 26
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=59.83 E-value=18 Score=26.49 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHhhhccCchhHHHHHHHHHhhc
Q 024961 6 IHLLALSHVYSVPQLKQRCTKGLGER 31 (260)
Q Consensus 6 ~~LL~AAd~yqI~~LK~~Ce~~L~~~ 31 (260)
.+++.+|+.|+.+.|...|..|+.++
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35788899999999999999999865
No 27
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=56.63 E-value=5.1 Score=38.03 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=26.4
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhc
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGER 31 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~ 31 (260)
+||..||.-|+.++++.|.+.|-.|+.++
T Consensus 75 ~NvvsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 75 SNVVSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred CcEEEeEehhhhhccHHHHHHHHHHHHHh
Confidence 68899999999999999999999999554
No 28
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=20 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcC
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERL 32 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~L 32 (260)
..+.+|+.||+++.|++|..+|+..+...+
T Consensus 98 ~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 98 GTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 467899999999999999999999887665
No 29
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=54.60 E-value=26 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=22.8
Q ss_pred HHHHHhhhccCchhHHHHHHHHHhhc
Q 024961 6 IHLLALSHVYSVPQLKQRCTKGLGER 31 (260)
Q Consensus 6 ~~LL~AAd~yqI~~LK~~Ce~~L~~~ 31 (260)
.+++..|+.|+.+.|...|..|+..+
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46889999999999999999999876
No 30
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=43.18 E-value=25 Score=31.90 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.3
Q ss_pred hhHHHHHHHhhhccCchhHHHHHHHHHhhc
Q 024961 2 EKYGIHLLALSHVYSVPQLKQRCTKGLGER 31 (260)
Q Consensus 2 e~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~ 31 (260)
+..+.+|++=|.+|.++.|.+.|+..|...
T Consensus 75 ~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 75 EKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 356789999999999999999999988765
No 31
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=40.48 E-value=25 Score=24.44 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=15.1
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHH
Q 024961 32 LTIDNVVDVLQLARLCDAPDLYLRC 56 (260)
Q Consensus 32 Ls~eN~l~il~lA~~~~a~~Lk~~c 56 (260)
++.+|+..++.+|+.|+.+.|...|
T Consensus 65 ~~~~~~~~l~~~a~~~~~~~l~~~c 89 (90)
T smart00225 65 LPEENVEELLELADYLQIPGLVELC 89 (90)
T ss_pred cCHHHHHHHHHHHHHHCcHHHHhhh
Confidence 4445666666666666666665554
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=19 Score=27.55 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCc--ccHHHHHHHHHH--hhcC------ccCCCCCcchHHHHHH
Q 024961 139 PTKNRGPCSKFA--TCQGLQLLIRHF--ATCK------KRVNGGCLRCKRMWQL 182 (260)
Q Consensus 139 ~~~~~~~C~~~~--~C~~lk~l~~H~--~~C~------~r~~ggC~~Ckr~~~L 182 (260)
+++.-+.|. +| .|+-+-++-.|. +-|- ..+.|-||.|++-|++
T Consensus 30 Fdg~Cp~Ck-~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 30 FDGCCPDCK-LPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred cCCcCCCCc-CCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 334456788 87 798888877775 4453 2345789999998875
No 33
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=36.12 E-value=11 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHhhhhhhhhhhhhhchhhhhhhcCCccccccC
Q 024961 227 VSAKTISSLSQQKRKRMEESRGTMGDYSIRSFK 259 (260)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.+.+.||+.-...++++-.+|..++..|+| |+
T Consensus 8 ~RS~~M~~ir~k~TkpE~~lr~~L~~~G~R-yR 39 (75)
T PF03852_consen 8 QRSKNMSRIRSKDTKPELALRRALHALGLR-YR 39 (75)
T ss_dssp HHHHHHHT--SSS-HHHHHHHHHHHHTT---EE
T ss_pred HHHHHHhhccCCCChHHHHHHHHHHhcCCE-EE
Confidence 566788888888889888999999999988 54
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=35.49 E-value=33 Score=34.91 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=30.8
Q ss_pred cCCcccHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 024961 31 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASR 63 (260)
Q Consensus 31 ~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~n 63 (260)
.|+.+||-+++..|..+..+.+.+.|-+|+..+
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999975
No 35
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=35.25 E-value=93 Score=22.92 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=32.0
Q ss_pred HHHhhcCCcccHHHHHHHHhhCCChHHHHHHHHHHHHhhhh
Q 024961 26 KGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKA 66 (260)
Q Consensus 26 ~~L~~~Ls~eN~l~il~lA~~~~a~~Lk~~c~~FI~~nf~~ 66 (260)
.|+ .++.+..++++..|.-.+.+.|...|.++|+..+..
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g 45 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG 45 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC
Confidence 455 678999999999999999999999999999987754
No 36
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=34.03 E-value=27 Score=25.98 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.2
Q ss_pred CCCcchHHHHHHHHHHH
Q 024961 171 GGCLRCKRMWQLLRLHS 187 (260)
Q Consensus 171 ggC~~Ckr~~~Ll~lHa 187 (260)
-+||.|++++++|.-+.
T Consensus 8 ~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLA 24 (86)
T ss_pred CCCccHHHHHHHHHHhC
Confidence 48999999999987653
No 37
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=57 Score=27.47 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=27.0
Q ss_pred hHHHHHHHhhhccCchhHHHHHHHHHhhcCC
Q 024961 3 KYGIHLLALSHVYSVPQLKQRCTKGLGERLT 33 (260)
Q Consensus 3 ~~v~~LL~AAd~yqI~~LK~~Ce~~L~~~Ls 33 (260)
++..++.-||+++.++.|.++|+..+.+.|-
T Consensus 93 emL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 93 EMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 5788899999999999999999998876543
No 38
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=28.62 E-value=3.2e+02 Score=25.13 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=72.4
Q ss_pred HHHHHHHhhhccCchh-HHHHHHHHHhhcCCcccHHHHHHHH------hhCCChHHHHHHHHHHHHh-------------
Q 024961 4 YGIHLLALSHVYSVPQ-LKQRCTKGLGERLTIDNVVDVLQLA------RLCDAPDLYLRCMKLAASR------------- 63 (260)
Q Consensus 4 ~v~~LL~AAd~yqI~~-LK~~Ce~~L~~~Ls~eN~l~il~lA------~~~~a~~Lk~~c~~FI~~n------------- 63 (260)
+...||.+|..++... .+.-=|..+...|+--++-+++.-+ -.|+.+-.......|+...
T Consensus 91 FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~ 170 (258)
T PF03000_consen 91 FLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESESES 170 (258)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccccccccccccc
Confidence 4567788887777765 3444455555567777788877777 3466555555555565541
Q ss_pred --------hhhhhc-chhhhHhhhcCchHHHHHHHhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 024961 64 --------FKAVEK-TEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICT 126 (260)
Q Consensus 64 --------f~~V~~-te~f~~L~~~~P~L~~eil~~v~~~d~~~~~~~r~r~e~~v~~ql~~am~~L~Ha~~ 126 (260)
+..|.+ -|+|+.-...+|.|-..-+..+++.=-...+.. .. .|++||+.-..+..
T Consensus 171 ~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~----hD----~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 171 GSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPS----HD----GLYRAIDIYLKAHP 234 (258)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhc----cc----hHHHHHHHHHHHcc
Confidence 122222 367776677888888888888777533322222 33 48899999888764
No 39
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=23.80 E-value=50 Score=24.17 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.8
Q ss_pred CCCcchHHHHHHHHH
Q 024961 171 GGCLRCKRMWQLLRL 185 (260)
Q Consensus 171 ggC~~Ckr~~~Ll~l 185 (260)
.+|+.|++.+.+|.-
T Consensus 9 ~~C~~C~~a~~~L~~ 23 (85)
T PRK11200 9 PGCPYCVRAKELAEK 23 (85)
T ss_pred CCChhHHHHHHHHHh
Confidence 489999999999874
No 40
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=21.85 E-value=54 Score=23.02 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=13.2
Q ss_pred CCCcchHHHHHHHHH
Q 024961 171 GGCLRCKRMWQLLRL 185 (260)
Q Consensus 171 ggC~~Ckr~~~Ll~l 185 (260)
-+||.|.+...+|.-
T Consensus 9 ~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 9 PGCPFCARAKAALQE 23 (72)
T ss_pred CCCHHHHHHHHHHHH
Confidence 489999999999974
No 41
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.27 E-value=63 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.786 Sum_probs=11.7
Q ss_pred CCCcchHHHHHHHH
Q 024961 171 GGCLRCKRMWQLLR 184 (260)
Q Consensus 171 ggC~~Ckr~~~Ll~ 184 (260)
-||+.|++...+|.
T Consensus 7 ~~C~~C~~~~~~L~ 20 (60)
T PF00462_consen 7 PGCPYCKKAKEFLD 20 (60)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH
Confidence 38999999998884
Done!