BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024962
         (260 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9KD93|AROE_BACHD Shikimate dehydrogenase OS=Bacillus halodurans (strain ATCC BAA-125
           / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=aroE PE=3
           SV=1
          Length = 278

 Score = 34.7 bits (78), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 192 IHNQKFAELTGNDIFKG-DVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGV 247
           +HNQ F  L  +  +   DV P   EK +  A+  +M G N+    KV   DY   V
Sbjct: 20  MHNQMFQLLDFDGYYHAFDVEPSQLEKAVEGARALQMQGFNVTIPHKVTIMDYLDMV 76


>sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp.
           japonica GN=PDR12 PE=2 SV=1
          Length = 1500

 Score = 32.7 bits (73), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 31  KEINGSGIFVANGENGASESDAGN----RNNRTSVRVYQQAMNGISQISFSAEETVSPKK 86
           KE  G+G       NG+++S+ GN    R  R S R+   + NG+S++         P++
Sbjct: 824 KEAEGNGDARHTVRNGSTKSNGGNHKEMREMRLSARLSNSSSNGVSRLMSIGSNEAGPRR 883

Query: 87  PTSVP 91
              +P
Sbjct: 884 GMVLP 888


>sp|O72904|NPH2_FOWPN RNA helicase NPH-II OS=Fowlpox virus (strain NVSL) GN=NPH2 PE=3
           SV=1
          Length = 682

 Score = 32.0 bits (71), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 16/117 (13%)

Query: 99  LSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPA 158
           +S +L+ + D + ++ + D +F  I G  ++S   EI        ++  S +SK   E  
Sbjct: 332 MSATLEDDRD-RLQEFLPDVEFYHIEGPVLYS-IKEI------YVKNKYSYDSKAYTEEE 383

Query: 159 PRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGND----IFKGDVP 211
            +N+ T++    P  G   ILF    +   S+ I  +K+ E + +D    I  G +P
Sbjct: 384 KKNISTTLNWCRPRNGMCGILF----LASVSQCISYKKYLEKSNSDMDFIIIHGKIP 436


>sp|Q99541|PLIN2_HUMAN Perilipin-2 OS=Homo sapiens GN=PLIN2 PE=1 SV=2
          Length = 437

 Score = 31.6 bits (70), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 53  GNRNNRTSVRVYQQAMNGISQISFSAEETVSPKKPT-SVPEVAKQRELSGSLQSESDLKT 111
           G+ + +   R YQQA++ + +    +++T+S    T  + E A++   S + Q   D + 
Sbjct: 221 GSLSTKLHSRAYQQALSRVKEAKQKSQQTISQLHSTVHLIEFARKNVYSAN-QKIQDAQD 279

Query: 112 KKQISDAKFKEISGHDIFSP---APEIQPRSLAAARSL 146
           K  +S  ++K   G+D       A  I+ R+LA AR+L
Sbjct: 280 KLYLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNL 317


>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2
          Length = 1134

 Score = 31.2 bits (69), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 95  KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKD 153
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++   +
Sbjct: 227 KERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEARAQNE 285


>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3
          Length = 1140

 Score = 31.2 bits (69), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 95  KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKD 153
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++   +
Sbjct: 227 KERDFSMFLNLDEVFKVMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEARAQNE 285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.126    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,014,376
Number of Sequences: 539616
Number of extensions: 3958121
Number of successful extensions: 10129
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 10101
Number of HSP's gapped (non-prelim): 98
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)