Query 024962
Match_columns 260
No_of_seqs 94 out of 96
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 17:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u07a_ d.212.1.2 (A:) TonB {E 26.0 5.1 0.00037 27.7 -0.7 43 89-131 13-55 (90)
2 d3ci0k1 a.60.16.1 (K:204-274) 22.5 5.5 0.0004 27.8 -1.1 32 2-33 15-46 (71)
3 d1dzfa2 d.78.1.1 (A:144-215) E 9.4 53 0.0038 22.2 1.3 29 10-38 12-40 (72)
4 d1c52a_ a.3.1.1 (A:) Cytochrom 8.8 70 0.0051 22.4 1.8 24 75-98 90-113 (131)
5 d1hmja_ d.78.1.1 (A:) RNA poly 7.5 49 0.0035 22.2 0.3 27 10-36 5-31 (68)
6 d1eika_ d.78.1.1 (A:) RNA poly 7.4 73 0.0053 21.7 1.3 29 10-38 16-44 (77)
7 d1lghb_ f.3.1.1 (B:) Light-har 6.9 62 0.0045 20.4 0.6 10 11-20 6-15 (43)
8 d1xa6a2 d.93.1.1 (A:21-161) Be 5.8 1E+02 0.0074 22.9 1.5 16 7-22 38-53 (141)
9 d1jo5a_ f.3.1.1 (A:) Light-har 5.5 72 0.0052 20.5 0.3 11 11-21 11-21 (48)
10 d1mhhe_ d.15.7.1 (E:) Immunogl 5.1 47 0.0034 22.4 -0.8 14 232-245 9-22 (63)
No 1
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=25.95 E-value=5.1 Score=27.73 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=37.8
Q ss_pred ChhHHhhhhhcccccccchhhhhhcccchhhhhhhccCCCCCC
Q 024962 89 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSP 131 (260)
Q Consensus 89 s~~evAkqrELsgt~ese~d~k~kKqiS~aK~KELSGsdIFap 131 (260)
..|+.|+++-+.|++.=+-.....-.+.+.++-+=+||++|..
T Consensus 13 ~YP~~A~~~g~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld~ 55 (90)
T d1u07a_ 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFER 55 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSHH
T ss_pred CCCHHHHHCCCeEEEEEEEEEeCCCCEeEEEEEECCCchHHHH
Confidence 4789999999999998777788888999999999999999864
No 2
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=22.54 E-value=5.5 Score=27.85 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=20.3
Q ss_pred cceeeeecccchhhhhhhcccCCCCccccccc
Q 024962 2 LAAAVITYLSSSKIVQCDEFRKPCSGYKLKEI 33 (260)
Q Consensus 2 ~~~~~~~~~~~~ee~~~l~krkpcS~~K~KEm 33 (260)
|.+++|-+.++..+|+.|...||-.|++-.+.
T Consensus 15 LL~Alf~~~ls~~~A~~li~~RP~~Gw~sv~~ 46 (71)
T d3ci0k1 15 ILEALFDPWLSPVQARALLQQRPAKGWEDVDQ 46 (71)
T ss_dssp HHHHHTC-------CCHHHHTCCTTCCSCHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHhCCcchhhhHHH
Confidence 45667888999999999999999999986553
No 3
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.45 E-value=53 Score=22.24 Aligned_cols=29 Identities=17% Similarity=-0.114 Sum_probs=23.4
Q ss_pred ccchhhhhhhcccCCCCcccccccccCCc
Q 024962 10 LSSSKIVQCDEFRKPCSGYKLKEINGSGI 38 (260)
Q Consensus 10 ~~~~ee~~~l~krkpcS~~K~KEmtGsgI 38 (260)
.+|+||++.|+++-.|+...+-.|.=++-
T Consensus 12 ~l~~eE~~~il~~y~i~~~qLP~I~~~DP 40 (72)
T d1dzfa2 12 RLSSDEKRELLKRYRLKESQLPRIQRADP 40 (72)
T ss_dssp ECCHHHHHHHHHHTTCCGGGSCEECTTCH
T ss_pred EcCHHHHHHHHHHhCCCHhHCCeecccCH
Confidence 47899999999999998888877755443
No 4
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=8.81 E-value=70 Score=22.40 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.0
Q ss_pred eecCCcccCCCCCCChhHHhhhhh
Q 024962 75 SFSAEETVSPKKPTSVPEVAKQRE 98 (260)
Q Consensus 75 sFg~~~~vspkkpts~~evAkqrE 98 (260)
+||.........|.|..|||+.|+
T Consensus 90 ~~gn~~~~~~~~~~t~~~v~~~R~ 113 (131)
T d1c52a_ 90 AWGDAKKVKGFKPFTAEEVKKLRA 113 (131)
T ss_dssp TTSTGGGSTTCCCCCHHHHHHHTT
T ss_pred HcCCCCcccCCCCCCHHHHHHHHc
Confidence 355444455667889999999885
No 5
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.45 E-value=49 Score=22.18 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=21.1
Q ss_pred ccchhhhhhhcccCCCCcccccccccC
Q 024962 10 LSSSKIVQCDEFRKPCSGYKLKEINGS 36 (260)
Q Consensus 10 ~~~~ee~~~l~krkpcS~~K~KEmtGs 36 (260)
.||+||++.|+++-.|+...+-.|.=+
T Consensus 5 il~~eE~~~ll~~y~i~~~qLP~I~~~ 31 (68)
T d1hmja_ 5 IVPKEEVEEILKRYNIKIQQLPKIYED 31 (68)
T ss_pred ECCHHHHHHHHHHhCCCHHHCCccccc
Confidence 378999999999999987666666433
No 6
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.41 E-value=73 Score=21.73 Aligned_cols=29 Identities=7% Similarity=-0.089 Sum_probs=22.5
Q ss_pred ccchhhhhhhcccCCCCcccccccccCCc
Q 024962 10 LSSSKIVQCDEFRKPCSGYKLKEINGSGI 38 (260)
Q Consensus 10 ~~~~ee~~~l~krkpcS~~K~KEmtGsgI 38 (260)
.+|+||++.|+++-.|+...+-.|.=++-
T Consensus 16 il~~ee~~~~l~~~~i~~~qLP~I~~~DP 44 (77)
T d1eika_ 16 ILNESEAKRVLKELDAHPEQLPKIKTTDP 44 (77)
T ss_dssp EECHHHHHHHHHHTTCCTTTSCCCBTTSH
T ss_pred EcCHHHHHHHHHHhcCCHHHCCeecccCH
Confidence 47999999999999998777766654443
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.88 E-value=62 Score=20.42 Aligned_cols=10 Identities=0% Similarity=-0.187 Sum_probs=8.0
Q ss_pred cchhhhhhhc
Q 024962 11 SSSKIVQCDE 20 (260)
Q Consensus 11 ~~~ee~~~l~ 20 (260)
+|+|||+.+-
T Consensus 6 LT~~EA~EfH 15 (43)
T d1lghb_ 6 LTEEEAIAVH 15 (43)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7899998764
No 8
>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=1e+02 Score=22.89 Aligned_cols=16 Identities=6% Similarity=-0.330 Sum_probs=13.5
Q ss_pred eecccchhhhhhhccc
Q 024962 7 ITYLSSSKIVQCDEFR 22 (260)
Q Consensus 7 ~~~~~~~ee~~~l~kr 22 (260)
|-|.++-+|||.|+..
T Consensus 38 yhG~isR~eAe~lL~~ 53 (141)
T d1xa6a2 38 FHGIISREQADELLGG 53 (141)
T ss_dssp EEEECCHHHHHHHHCS
T ss_pred eeccCCHHHHHHHHcC
Confidence 6678999999999953
No 9
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.50 E-value=72 Score=20.52 Aligned_cols=11 Identities=9% Similarity=-0.221 Sum_probs=8.4
Q ss_pred cchhhhhhhcc
Q 024962 11 SSSKIVQCDEF 21 (260)
Q Consensus 11 ~~~ee~~~l~k 21 (260)
+|+|||+.+-+
T Consensus 11 LT~~EA~E~H~ 21 (48)
T d1jo5a_ 11 LTDEQAQELHS 21 (48)
T ss_dssp GHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78999987643
No 10
>d1mhhe_ d.15.7.1 (E:) Immunoglobulin light chain-binding domain of protein L {Peptostreptococcus magnus [TaxId: 1260]}
Probab=5.14 E-value=47 Score=22.37 Aligned_cols=14 Identities=43% Similarity=0.888 Sum_probs=0.0
Q ss_pred CCCCCcccccccCC
Q 024962 232 IFADEKVESRDYFG 245 (260)
Q Consensus 232 IFAdgk~~~rd~~g 245 (260)
|||||+.+.-.+-|
T Consensus 9 ifadG~tQtAeFkG 22 (63)
T d1mhhe_ 9 IFADGKIQTAEFKG 22 (63)
T ss_dssp ECTTSCEEEEEEEE
T ss_pred EEcCCcEEEEEEee
Done!