BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024963
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 23 DASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDC 82
AS GD +P+YR CVK C C G A + G + +P Y+ W C
Sbjct: 15 SASQGDKEPVYRDCVKHCVRANCTG-------------ARLRG-FQSTQPPYMALTGWTC 60
Query: 83 LSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLS 142
DCRY CM A G+ ++HGKWPF R +EPAS S+LN G
Sbjct: 61 RDDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPASALASLLN------GLAC 114
Query: 143 FFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVA 202
+LL Y+ + Y+ + + +S+N+WFWS VFH+RD LTEK DY A A
Sbjct: 115 LLMLLRYRSAVPCQSPMYHTITA----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASA 170
Query: 203 LLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 250
++ +S+ L +R+ +R A MV L+ T+H+ YL F DYG
Sbjct: 171 VILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYG 218
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 30/231 (12%)
Query: 23 DASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDC 82
S GD +P+YR CV QCEE C G ++N + ++P+Y+ W C
Sbjct: 19 SGSQGDREPVYRDCVLQCEEQNC-------------SGGALNH-FRSRQPIYMSLAGWTC 64
Query: 83 LSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLS 142
DC+Y CM GH ++HGKWPF R QEPAS S LN G S
Sbjct: 65 RDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLN------GLAS 118
Query: 143 FFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSS 199
+L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK DY
Sbjct: 119 LVMLCRYRTFVPAS-------SPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFC 171
Query: 200 AVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 250
A ++ S+ L +R+ ++ A A LL +T H+ YL+ + DYG
Sbjct: 172 ASTVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYG 222
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 119/235 (50%), Gaps = 30/235 (12%)
Query: 19 LGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWK 78
+G+ S GD +P+YR CV +CEE C G H + ++P+Y+
Sbjct: 15 VGLAGGSQGDREPVYRDCVLRCEERNCSGDA-LKHFR-------------SRQPIYMSLA 60
Query: 79 KWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFH 138
W C DC+Y CM GH ++HGKWPF R IQEPAS S+LN
Sbjct: 61 GWTCRDDCKYECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------ 114
Query: 139 GWLSFFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKF 195
G S +L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK
Sbjct: 115 GLASLVMLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKM 167
Query: 196 DYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 250
DY A A++ S+ L +R+ ++ + A LL +T HI YL+ DYG
Sbjct: 168 DYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYG 222
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 122/245 (49%), Gaps = 31/245 (12%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWY 68
+A F+VL L GV+ AS GD +P+YR CV CE C G + +
Sbjct: 1 MAPFLVLF-LAGVVAASRGDREPVYRDCVTLCERNNCTGSRL--------------TDFR 45
Query: 69 MQEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPAS 125
++PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 46 AEQPLYMRVTGWTCLDDCRYQCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPAS 102
Query: 126 VAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFH 185
S LN G S +LL Y+ + + + Y + +S+N+WFWS +FH
Sbjct: 103 ALASFLN------GVASLLMLLRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFH 152
Query: 186 SRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFY 245
+RD LTEK DY A +++ S+ L +R+F ++ + A L+ H+ YL
Sbjct: 153 TRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLG 212
Query: 246 KLDYG 250
+ DY
Sbjct: 213 RFDYS 217
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 122/245 (49%), Gaps = 31/245 (12%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWY 68
+A F+VL L GV+ AS GD +P+YR CV C++ C G + +
Sbjct: 1 MAPFLVLF-LAGVVSASRGDREPVYRDCVTVCDQNNCTGFRL--------------RDFR 45
Query: 69 MQEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPAS 125
Q+PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 46 AQQPLYMRLTGWTCLDDCRYKCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPAS 102
Query: 126 VAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFH 185
S LN G S +L Y+ + + + Y + +S+N+WFWS +FH
Sbjct: 103 ALASFLN------GVASLLMLFRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFH 152
Query: 186 SRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFY 245
+RD LTEK DY A +++ S+ L +R+F ++ + A L+ HI YL
Sbjct: 153 TRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLG 212
Query: 246 KLDYG 250
+ DY
Sbjct: 213 RFDYS 217
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 114/230 (49%), Gaps = 30/230 (13%)
Query: 24 ASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCL 83
S GD +P+YR CV +CEE C G H F S +P+Y+ W C
Sbjct: 20 GSQGDREPVYRDCVLRCEERNCSGDA-LKH--FRS-----------LQPIYMSLAGWTCR 65
Query: 84 SDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSF 143
DC+Y CM GH ++HGKWPF R IQEPAS S+LN G S
Sbjct: 66 DDCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASL 119
Query: 144 FILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSA 200
+L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK DY A
Sbjct: 120 VMLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCA 172
Query: 201 VALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 250
A++ S+ L +R+ ++ + A LL + H YL+ + DY
Sbjct: 173 SAVILHSIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYS 222
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 23 DASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDC 82
S GD +P+YR CV +CEE C G H F S ++P+Y+ W C
Sbjct: 19 SGSQGDREPVYRDCVLRCEERNCSGGA-LKH--FRS-----------RQPIYMSLAGWTC 64
Query: 83 LSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLS 142
DC+Y CM G ++HGKWPF R QEPAS S LN G S
Sbjct: 65 RDDCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVASFLN------GLAS 118
Query: 143 FFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVA 202
+L Y+ + + Y P + ++S+N+WFWS VFH+RD DLTEK DY A
Sbjct: 119 LVMLCRYRTSVPASSPMY----PTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCAST 174
Query: 203 LLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 250
++ S+ L +R+ ++ A A LL +T H+ YL+ DYG
Sbjct: 175 VILHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYG 222
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 122/244 (50%), Gaps = 31/244 (12%)
Query: 11 LFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQ 70
LF LS L + ASAGD P+Y +CV +C E C G SD + +
Sbjct: 12 LFTALS-LFRQISASAGDLHPVYVSCVNRCIENKCHGNP--------SDTSKL------- 55
Query: 71 EPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSV 130
PL L+ +WDC S+C Y C + E A +YHGKW FIRV+GIQE SV FS+
Sbjct: 56 -PLDLKLFRWDCGSNCGYECEITAENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSM 114
Query: 131 LNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVD 190
LN +H++G + ++ +P + K W I G MN+W WS+VFH RD
Sbjct: 115 LNFMIHYNG----YHIMRRCIPDEHPAK---RLCLSWAIVG---MNAWVWSSVFHIRDTP 164
Query: 191 LTEKFDYSSAVALLGF----SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYK 246
+TEK DY SA A + F +LIL + + ++ +A H+ YL+FY
Sbjct: 165 ITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYS 224
Query: 247 LDYG 250
DYG
Sbjct: 225 FDYG 228
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 23/250 (9%)
Query: 3 MATRNWVALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGAS 62
M++R+ A+ ++L L+ AS GD + C + CE T C S+DG
Sbjct: 1 MSSRSLSAIVLLLGALVTACLASNGDRTQFFHNCRQNCERTNC-----------SADGLE 49
Query: 63 IN--GPWYMQEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGI 120
I + Q+ ++ + +W C +C+Y CM G +++GKWPF+R+ G+
Sbjct: 50 IQEQAVKFYQQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGM 109
Query: 121 QEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFW 180
QEPASV FS LN +H +L ++ ++ Y L HI+ S+N W W
Sbjct: 110 QEPASVIFSCLNFVVHLR------LLRKFRREVRPDSPCYM----LTHIFAVTSLNGWIW 159
Query: 181 SAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHIL 240
SA+FH+RD LTE DY+ A +++ SL + ++R + R ++ L++ +
Sbjct: 160 SAIFHTRDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFA 219
Query: 241 YLNFYKLDYG 250
YL+ + +Y
Sbjct: 220 YLSVGRFNYA 229
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 25/245 (10%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASING--- 65
V + +++ C L + S GD + C CE ++C P+ + + N
Sbjct: 5 VVVTLLVHCFL--VTCSPGDNLDEFIDCTYACE----YNRRC-PNSQINYIDPETNMFHD 57
Query: 66 -PWYMQEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPA 124
++ PLY + WDC+SDC Y C R ++HGKWPF+RV G QE
Sbjct: 58 IEFFDTPPLYSKLLFWDCISDCDYQCQHIITRWRIDEEEEIYQFHGKWPFLRVLGTQEFF 117
Query: 125 SVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFL-----SMNSWF 179
S FS+ N H+ G++ F +++ + S I+ +L M +W
Sbjct: 118 STIFSIGNFIPHYKGFVKF------SRIIREEGDRRRKNSRSILIWNYLYVTVAGMLAWT 171
Query: 180 WSAVFHSRDVDLTEKFDY--SSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTT 237
S+VFH RD+ +TEK DY + L GF I A + S + + A+ A+ + A
Sbjct: 172 ASSVFHCRDLIITEKLDYFFAGLTVLTGFHAIFARMTSMFLYPKIAQAFTAS-VAAIFAL 230
Query: 238 HILYL 242
HIL L
Sbjct: 231 HILRL 235
>sp|Q54BK0|NFX1_DICDI Transcriptional repressor NF-X1 homolog OS=Dictyostelium discoideum
GN=nfx1 PE=3 SV=1
Length = 1506
Score = 32.3 bits (72), Expect = 3.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 CLLGVLDASAGDADPLYRACVKQCEET-GCVGQKCFPHC 54
C G +D S D DP + +C ++C+ T C KC C
Sbjct: 552 CGSGSIDTSQSDDDPRFFSCAEKCDRTLDCGNHKCQRTC 590
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,441,700
Number of Sequences: 539616
Number of extensions: 3934046
Number of successful extensions: 8452
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8412
Number of HSP's gapped (non-prelim): 16
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)