Query 024963
Match_columns 260
No_of_seqs 119 out of 225
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 2.2E-83 4.8E-88 585.7 16.6 226 8-255 4-230 (319)
2 PF04080 Per1: Per1-like ; In 100.0 5.8E-78 1.3E-82 549.5 14.8 175 70-254 2-177 (267)
3 COG5237 PER1 Predicted membran 100.0 2.9E-69 6.2E-74 484.0 15.9 218 12-255 6-229 (319)
4 PF03006 HlyIII: Haemolysin-II 89.2 1.9 4.1E-05 37.3 7.7 42 168-209 45-93 (222)
5 PF12036 DUF3522: Protein of u 82.0 6.2 0.00013 34.6 7.3 33 171-203 34-75 (186)
6 TIGR01065 hlyIII channel prote 78.1 30 0.00065 30.4 10.4 42 167-208 39-85 (204)
7 PF10277 Frag1: Frag1/DRAM/Sfk 66.1 82 0.0018 26.7 12.7 91 112-209 41-133 (215)
8 PF11416 Sed5p: Integral membr 58.7 5.9 0.00013 25.0 1.2 20 25-44 3-22 (29)
9 PF05875 Ceramidase: Ceramidas 52.8 1.8E+02 0.0038 26.3 11.2 67 120-201 24-90 (262)
10 PF10709 DUF2511: Protein of u 37.2 14 0.0003 29.0 0.5 13 106-118 5-17 (87)
11 PRK15087 hemolysin; Provisiona 34.9 3.3E+02 0.0072 24.3 9.6 40 168-207 55-98 (219)
12 KOG0748 Predicted membrane pro 30.3 4.4E+02 0.0094 24.7 9.4 30 181-210 98-133 (286)
13 PF05984 Cytomega_UL20A: Cytom 27.0 53 0.0011 25.9 2.2 17 3-19 1-17 (100)
14 PF08333 DUF1725: Protein of u 21.6 22 0.00047 20.7 -0.6 6 107-112 2-7 (20)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.2e-83 Score=585.69 Aligned_cols=226 Identities=46% Similarity=0.870 Sum_probs=202.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCChhHHHHHHHhhhcCCCCCCccCccccCCCCCCcCCCCcCCcchhhhhccCCCCCCCC
Q 024963 8 WVALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCR 87 (260)
Q Consensus 8 ~~~~~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~ 87 (260)
|+.+++++.++ ....||+||++|+|++|+++||.++|.++.+. |+.+ +..|++.|++.|||.|||+
T Consensus 4 ~~v~~ll~~c~-~~~~aS~GD~~~~y~~Cv~~Ce~~~c~~~~~~-----~~~~--------~~~~l~~r~~~wdc~s~C~ 69 (319)
T KOG2970|consen 4 WVVKFLLLKCL-VQFEASPGDRKPGYVDCVQGCEANECSNNYID-----PQTN--------MFHPLYTRLWAWDCCSDCR 69 (319)
T ss_pred eehHHHHHHHH-hhhccCCCCCchhHHHHHHHHhhccCCCCcCC-----cccc--------ccchhHHHHHhcCcchhcC
Confidence 44444444454 56899999999999999999999999886532 2222 2339999999999999999
Q ss_pred cccchhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhH
Q 024963 88 YNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLW 167 (260)
Q Consensus 88 Y~Cm~~~t~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 167 (260)
|+|||.++.+|.++|+|++||||||||+||+||||||||+||++||++|++|+.+ +|.+.+++.+.+|+ ++|
T Consensus 70 Y~Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~ 141 (319)
T KOG2970|consen 70 YQCMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLW 141 (319)
T ss_pred ceeeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cch
Confidence 9999999999999999999999999999999999999999999999999999654 66667778888877 699
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHHHhhhcccc
Q 024963 168 HIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDE-AARVMVAAPLLAFVTTHILYLNFYK 246 (260)
Q Consensus 168 ~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~-~~r~~~~~~~~~~~~~Hi~yL~~~~ 246 (260)
++|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||++++
T Consensus 142 ~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~ 221 (319)
T KOG2970|consen 142 LIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYN 221 (319)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999999999999999999999999999999999876 7788999999999999999999999
Q ss_pred cCCccchhh
Q 024963 247 LDYGIRPLC 255 (260)
Q Consensus 247 fDY~YNM~~ 255 (260)
|||||||++
T Consensus 222 fdYgyNm~~ 230 (319)
T KOG2970|consen 222 FDYGYNMIV 230 (319)
T ss_pred cccccceee
Confidence 999999964
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=5.8e-78 Score=549.48 Aligned_cols=175 Identities=46% Similarity=0.780 Sum_probs=159.8
Q ss_pred CcchhhhhccCCCCCCCCcccchhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHh
Q 024963 70 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYY 149 (260)
Q Consensus 70 ~~pl~l~l~~W~C~sdC~Y~Cm~~~t~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~ 149 (260)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|++++++.
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~~~--- 78 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFRRQ--- 78 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHHHh---
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999886543
Q ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHH
Q 024963 150 KLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVR-DEAARVMVA 228 (260)
Q Consensus 150 ~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~-~~~~r~~~~ 228 (260)
.+.+.+.++ .|+++++||||||+||||||+||+++|||||||+|+++|++++|++++|+|+++ ++..+.+++
T Consensus 79 -~~~~~p~~~------~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 79 -VPRNSPMYP------YYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred -ccCCCCCcC------eeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 332222222 367899999999999999999999999999999999999999999999999994 455678899
Q ss_pred HHHHHHHHHHHhhhcccccCCccchh
Q 024963 229 APLLAFVTTHILYLNFYKLDYGIRPL 254 (260)
Q Consensus 229 ~~~~~~~~~Hi~yL~~~~fDY~YNM~ 254 (260)
++|+++|++||+||++++|||||||+
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~ 177 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMK 177 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHH
Confidence 99999999999999999999999993
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.9e-69 Score=483.96 Aligned_cols=218 Identities=30% Similarity=0.457 Sum_probs=186.7
Q ss_pred HHHHHHhhccccCCCCCCChhHHHHHHHhhhc-CCCCCCccCccccCCCCCCcCCCCcCCcchhhhhccCCCCCCCCccc
Q 024963 12 FVVLSCLLGVLDASAGDADPLYRACVKQCEET-GCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNC 90 (260)
Q Consensus 12 ~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~Y~C 90 (260)
++.++.+...+.|||||++|||++|+.+|++. .|..++ +|. ...|++.++++|||.|+|+|+|
T Consensus 6 v~t~l~~~~~vt~s~gd~~~~~~~C~~~C~en~rc~~n~--------~dt--------n~~pL~~klf~wDc~s~cgy~C 69 (319)
T COG5237 6 VVTLLVHCFLVTCSPGDNLDEMKYCFGKCFENSRCNLNK--------TDT--------NMFPLVDKLFGWDCDSKCGYMC 69 (319)
T ss_pred hHHHHHHHheeecCCCCCcHHHHHHHHHHHHhcccCCCc--------CCc--------ccccHHHHHHcCccccccchHH
Confidence 33334444578999999999999999999966 884432 111 2569999999999999999999
Q ss_pred chhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCC-CCCccccccchhhHHH
Q 024963 91 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPL-KQTKKAYYEFSPLWHI 169 (260)
Q Consensus 91 m~~~t~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~ 169 (260)
++..++-+.+.++|+.||||||||.||+||||++|++||++|+++||.|+.++.+ +.+. .+.++.++ +.
T Consensus 70 ~~~~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~r----~i~~e~~~~R~~~------l~ 139 (319)
T COG5237 70 HLLCLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRMLR----KILRETRLGRLYY------LQ 139 (319)
T ss_pred HHHHHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccccccceEE------ee
Confidence 9999999999999999999999999999999999999999999999999988433 3332 23344444 34
Q ss_pred HHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHHHHHHHHHHhhhccc
Q 024963 170 YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRD----EAARVMVAAPLLAFVTTHILYLNFY 245 (260)
Q Consensus 170 ~~~v~~~aW~~StiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~----~~~r~~~~~~~~~~~~~Hi~yL~~~ 245 (260)
++++||+||+||+|||+||+++|||+|||+|+++|++|+|.+++|+.++.. +..|...+++++++|++||.||+++
T Consensus 140 wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i 219 (319)
T COG5237 140 WVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNI 219 (319)
T ss_pred HHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999999999999999999999999999999998753 3456677899999999999999999
Q ss_pred ccCCccchhh
Q 024963 246 KLDYGIRPLC 255 (260)
Q Consensus 246 ~fDY~YNM~~ 255 (260)
+|||+|||+.
T Consensus 220 ~fdY~YNm~~ 229 (319)
T COG5237 220 EFDYVYNMIS 229 (319)
T ss_pred cceeeehhhh
Confidence 9999999975
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=89.23 E-value=1.9 Score=37.29 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhHhhhhc-------cCCCccchhhHHHHHHHHHHHHH
Q 024963 168 HIYGFLSMNSWFWSAVFHS-------RDVDLTEKFDYSSAVALLGFSLI 209 (260)
Q Consensus 168 ~~~~~v~~~aW~~StiFH~-------RD~~~TEklDYf~A~a~vl~~l~ 209 (260)
.+|.+..+.-.+.||++|+ +.-.+-.|+||.+-...+..+..
T Consensus 45 ~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~ 93 (222)
T PF03006_consen 45 LIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYT 93 (222)
T ss_pred HHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhh
Confidence 4667777777999999999 34566779999988766655533
No 5
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=82.02 E-value=6.2 Score=34.57 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHhhhhccC-CC----cc----chhhHHHHHHH
Q 024963 171 GFLSMNSWFWSAVFHSRD-VD----LT----EKFDYSSAVAL 203 (260)
Q Consensus 171 ~~v~~~aW~~StiFH~RD-~~----~T----EklDYf~A~a~ 203 (260)
+.|+..+=++|+.+|+-| .+ ++ ++|||......
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s 75 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGS 75 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHH
Confidence 788999999999999999 55 44 37888777543
No 6
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=78.13 E-value=30 Score=30.40 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhHhhhhccCC-----CccchhhHHHHHHHHHHHH
Q 024963 167 WHIYGFLSMNSWFWSAVFHSRDV-----DLTEKFDYSSAVALLGFSL 208 (260)
Q Consensus 167 ~~~~~~v~~~aW~~StiFH~RD~-----~~TEklDYf~A~a~vl~~l 208 (260)
..+|..-.+...+.||+||+-+. .+-+|+||.+-..+|.-+.
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsy 85 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTY 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhh
Confidence 35677788888999999998873 1456889987766655443
No 7
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=66.10 E-value=82 Score=26.69 Aligned_cols=91 Identities=25% Similarity=0.348 Sum_probs=55.2
Q ss_pred cCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhC--CCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCC
Q 024963 112 WPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKL--PLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 189 (260)
Q Consensus 112 WPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~ 189 (260)
||+.-=.|.++|-+-+|+++-.+.-.-..-. ...+++. +..+..... ...+-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 9999999999999999998766544332111 1122221 111111111 222345678888888888899988887
Q ss_pred CccchhhHHHHHHHHHHHHH
Q 024963 190 DLTEKFDYSSAVALLGFSLI 209 (260)
Q Consensus 190 ~~TEklDYf~A~a~vl~~l~ 209 (260)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 4566677544444433
No 8
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=58.66 E-value=5.9 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCCCCChhHHHHHHHhhhcC
Q 024963 25 SAGDADPLYRACVKQCEETG 44 (260)
Q Consensus 25 S~GD~lp~f~~Cv~~C~~~~ 44 (260)
|+-||.-|||.||....+.+
T Consensus 3 ~IqdRT~EFqqcV~s~~k~n 22 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRN 22 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH-
T ss_pred chhHhhHHHHHHHHHHHHHH
Confidence 34589999999999998775
No 9
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=52.81 E-value=1.8e+02 Score=26.29 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=42.4
Q ss_pred ccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHH
Q 024963 120 IQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSS 199 (260)
Q Consensus 120 iQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEklDYf~ 199 (260)
|=||.=++-++.=+++=..|+.+.. +++. +. .. ...+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~~---~~~~----~~-~~------~l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLAR---RRGL----ER-RF------ALLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh---hccc----cc-hh------HHHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 5699988887777777777765521 1111 11 11 12233334444 889999999889999999665
Q ss_pred HH
Q 024963 200 AV 201 (260)
Q Consensus 200 A~ 201 (260)
-.
T Consensus 89 Ml 90 (262)
T PF05875_consen 89 ML 90 (262)
T ss_pred HH
Confidence 54
No 10
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.24 E-value=14 Score=28.99 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccccccCceecc
Q 024963 106 VKYHGKWPFIRVY 118 (260)
Q Consensus 106 ~QFhGKWPF~Rv~ 118 (260)
-||-+||||.|==
T Consensus 5 ~~fG~~Wpft~ee 17 (87)
T PF10709_consen 5 FEFGDKWPFTVEE 17 (87)
T ss_pred HHccCCCCceeee
Confidence 4788999999853
No 11
>PRK15087 hemolysin; Provisional
Probab=34.90 E-value=3.3e+02 Score=24.25 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHhhhhccCCC----ccchhhHHHHHHHHHHH
Q 024963 168 HIYGFLSMNSWFWSAVFHSRDVD----LTEKFDYSSAVALLGFS 207 (260)
Q Consensus 168 ~~~~~v~~~aW~~StiFH~RD~~----~TEklDYf~A~a~vl~~ 207 (260)
.+|+.-.+.-...||+||+=..+ +=+|+||.+-..+|.-+
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGs 98 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGT 98 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHh
Confidence 56788888889999999986521 23469998776555444
No 12
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=30.28 E-value=4.4e+02 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred HhhhhccCCC------ccchhhHHHHHHHHHHHHHH
Q 024963 181 SAVFHSRDVD------LTEKFDYSSAVALLGFSLIL 210 (260)
Q Consensus 181 StiFH~RD~~------~TEklDYf~A~a~vl~~l~~ 210 (260)
|+++|+=--- .==||||.+-.+.+.-+...
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~ 133 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLP 133 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHH
Confidence 9999985444 22368999887666555443
No 13
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=26.98 E-value=53 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=11.1
Q ss_pred CcchhHHHHHHHHHHhh
Q 024963 3 MATRNWVALFVVLSCLL 19 (260)
Q Consensus 3 m~~~~~~~~~~~~~~l~ 19 (260)
|+||.|++-++++.+.+
T Consensus 1 MaRRlwiLslLAVtLtV 17 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTV 17 (100)
T ss_pred CchhhHHHHHHHHHHHH
Confidence 88999977555444444
No 14
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=21.60 E-value=22 Score=20.65 Aligned_cols=6 Identities=67% Similarity=1.747 Sum_probs=3.9
Q ss_pred cccccc
Q 024963 107 KYHGKW 112 (260)
Q Consensus 107 QFhGKW 112 (260)
+|.|||
T Consensus 2 ~F~~kW 7 (20)
T PF08333_consen 2 KFAGKW 7 (20)
T ss_pred chHHHH
Confidence 566666
Done!