Query 024963
Match_columns 260
No_of_seqs 119 out of 225
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 17:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 28.0 6.3 0.00046 28.1 0.2 9 107-115 2-10 (113)
2 d1wmta_ g.3.7.2 (A:) Istx {Sco 24.1 15 0.0011 21.8 1.4 17 34-50 11-28 (41)
3 d1dx5i1 g.3.11.1 (I:345-387) T 15.5 19 0.0014 22.1 0.5 8 84-91 10-17 (43)
4 d1x5wa1 g.37.1.1 (A:8-35) Zinc 11.2 32 0.0023 19.0 0.5 8 84-91 6-13 (28)
5 d2fsja2 c.55.1.12 (A:1-164) Hy 9.9 40 0.0029 24.6 0.9 28 105-132 131-161 (164)
6 d1ggla_ b.60.1.2 (A:) Cellular 9.5 31 0.0022 25.1 0.0 19 105-123 1-19 (134)
7 d1n8ma_ g.3.7.2 (A:) PI4, pota 9.4 54 0.0039 19.3 1.1 17 34-50 10-27 (38)
8 d1uhaa1 g.3.1.1 (A:1-42) Lecti 9.3 44 0.0032 20.2 0.7 8 81-88 35-42 (42)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 7.4 3.2E+02 0.023 18.1 6.7 11 118-128 12-22 (100)
10 d2a2ua_ b.60.1.1 (A:) Major ur 6.7 58 0.0042 22.8 0.5 20 98-117 5-24 (158)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=27.99 E-value=6.3 Score=28.11 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=7.2
Q ss_pred ccccccCce
Q 024963 107 KYHGKWPFI 115 (260)
Q Consensus 107 QFhGKWPF~ 115 (260)
.|.||||++
T Consensus 2 ~~~G~~P~~ 10 (113)
T d1nyra1 2 ETKGAFPTW 10 (113)
T ss_dssp HHTTCCCTT
T ss_pred CCCCCCCcc
Confidence 588999963
No 2
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=24.08 E-value=15 Score=21.82 Aligned_cols=17 Identities=35% Similarity=1.034 Sum_probs=13.6
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 024963 34 RACVKQCEET-GCVGQKC 50 (260)
Q Consensus 34 ~~Cv~~C~~~-~C~~~~~ 50 (260)
.||-+.|+++ ||...++
T Consensus 11 sdcyepcekkyncarakc 28 (41)
T d1wmta_ 11 SDCYEPCEKKYNCARAKC 28 (41)
T ss_dssp HHHHHHHHHTTSCCCCEE
T ss_pred ccccchHHHhhchHHHHH
Confidence 5899999977 9987654
No 3
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.48 E-value=19 Score=22.08 Aligned_cols=8 Identities=38% Similarity=1.422 Sum_probs=7.1
Q ss_pred CCCCcccc
Q 024963 84 SDCRYNCM 91 (260)
Q Consensus 84 sdC~Y~Cm 91 (260)
++|.||||
T Consensus 10 ~~CE~qCq 17 (43)
T d1dx5i1 10 ANCEYQCQ 17 (43)
T ss_dssp CCCSSEEE
T ss_pred CCcceeee
Confidence 68999997
No 4
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=32 Score=19.01 Aligned_cols=8 Identities=50% Similarity=1.456 Sum_probs=6.8
Q ss_pred CCCCcccc
Q 024963 84 SDCRYNCM 91 (260)
Q Consensus 84 sdC~Y~Cm 91 (260)
+||.|.|.
T Consensus 6 ~ecsyscs 13 (28)
T d1x5wa1 6 SECSYSCS 13 (28)
T ss_dssp SSSSCEES
T ss_pred cccccccC
Confidence 49999995
No 5
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=9.95 E-value=40 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.8
Q ss_pred Cccccccc---CceecccccchHHHHHHHhH
Q 024963 105 PVKYHGKW---PFIRVYGIQEPASVAFSVLN 132 (260)
Q Consensus 105 i~QFhGKW---PF~Rv~GiQEp~SvlFSllN 132 (260)
..++.|+. -+.++.-+.||++++++++|
T Consensus 131 ~~~~~g~~~~i~I~~v~V~pQg~ga~~~~l~ 161 (164)
T d2fsja2 131 VTGPEGEVRQFNITRLIMRPQGVGAALYLLN 161 (164)
T ss_dssp EECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred EEeeCCeEEEEEEeEEEEecCCHHHHHHHHH
Confidence 45567775 56788999999999999887
No 6
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.48 E-value=31 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=13.7
Q ss_pred CcccccccCceecccccch
Q 024963 105 PVKYHGKWPFIRVYGIQEP 123 (260)
Q Consensus 105 i~QFhGKWPF~Rv~GiQEp 123 (260)
|+||-|||-+.+-=.+-|+
T Consensus 1 p~~f~Gtwkl~~sENfd~f 19 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDY 19 (134)
T ss_dssp CCSCCEEEEEEEEECHHHH
T ss_pred CCCcCEEEEEEeccCHHHH
Confidence 6899999999885433333
No 7
>d1n8ma_ g.3.7.2 (A:) PI4, potassium channel blocking toxin 4 {Scorpion (Pandinus imperator) [TaxId: 55084]}
Probab=9.39 E-value=54 Score=19.31 Aligned_cols=17 Identities=41% Similarity=1.228 Sum_probs=13.7
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 024963 34 RACVKQCEET-GCVGQKC 50 (260)
Q Consensus 34 ~~Cv~~C~~~-~C~~~~~ 50 (260)
+||-..|+++ +|.++++
T Consensus 10 kdCy~PC~k~TGc~nakC 27 (38)
T d1n8ma_ 10 RDCYRPCQKRTGCPNAKC 27 (38)
T ss_dssp HHHHHHHHHHHSSCCEEE
T ss_pred chhcchHHHhcCCCchHH
Confidence 6899999955 9988764
No 8
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=9.28 E-value=44 Score=20.21 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=6.4
Q ss_pred CCCCCCCc
Q 024963 81 DCLSDCRY 88 (260)
Q Consensus 81 ~C~sdC~Y 88 (260)
.|.|+|+|
T Consensus 35 GCqsnC~y 42 (42)
T d1uhaa1 35 GCQSQCDY 42 (42)
T ss_dssp TCCBCTTT
T ss_pred cccccCCc
Confidence 58888887
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.39 E-value=3.2e+02 Score=18.13 Aligned_cols=11 Identities=36% Similarity=0.271 Sum_probs=8.9
Q ss_pred ccccchHHHHH
Q 024963 118 YGIQEPASVAF 128 (260)
Q Consensus 118 ~GiQEp~SvlF 128 (260)
+|+|||+|-..
T Consensus 12 l~fqd~as~~a 22 (100)
T d3dtub2 12 TGFQPSASPVA 22 (100)
T ss_dssp CSCCCCCSHHH
T ss_pred cCCCCCCCHHH
Confidence 78999998754
No 10
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.70 E-value=58 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=15.0
Q ss_pred hhhcCCCCcccccccCceec
Q 024963 98 RDALGHGPVKYHGKWPFIRV 117 (260)
Q Consensus 98 r~~~g~~i~QFhGKWPF~Rv 117 (260)
..+++..+.+|-|||=-+-.
T Consensus 5 ~~~~nfdl~k~~G~Wy~ia~ 24 (158)
T d2a2ua_ 5 STRGNLDVAKLNGDWFSIVV 24 (158)
T ss_dssp TTTTCCCGGGGCEECEEEEE
T ss_pred cccccCChHHcCEEeEEEEE
Confidence 34677889999999976643
Done!