BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024966
         (260 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
           From Methylobacterium Extorquens
 pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
           From Methylobacterium Extorquens
          Length = 599

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 168 ESKYGFARRPVD----SGVYI-----EGSDNGVRRRLLLDPSRNMARLSQDRRDG 213
           E+K+G+ + P D    +GV +     +   +G  R+LL  P RN    + DR DG
Sbjct: 289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343


>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
           Mutant
 pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
           Mutant
 pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
           Mutant
 pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
           Mutant
          Length = 599

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 168 ESKYGFARRPVD----SGVYI-----EGSDNGVRRRLLLDPSRNMARLSQDRRDG 213
           E+K+G+ + P D    +GV +     +   +G  R+LL  P RN    + DR DG
Sbjct: 289 EAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343


>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
 pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
          Length = 599

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 168 ESKYGFARRPVD----SGVYI-----EGSDNGVRRRLLLDPSRNMARLSQDRRDG 213
           E+K+G+ + P D    +GV +     +   +G  R+LL  P RN    + DR DG
Sbjct: 289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,661,464
Number of Sequences: 62578
Number of extensions: 304749
Number of successful extensions: 495
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 3
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)