Query 024966
Match_columns 260
No_of_seqs 158 out of 353
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1.8E-66 3.9E-71 437.5 20.7 152 97-258 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.7 7.2E-09 1.6E-13 70.0 3.2 45 4-48 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 1.6E-07 3.4E-12 63.2 1.4 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.3 4.5E-07 9.7E-12 58.4 2.8 40 7-46 1-40 (41)
5 KOG2997 F-box protein FBX9 [Ge 92.6 0.041 8.9E-07 51.8 0.5 80 4-85 107-194 (366)
6 PF06881 Elongin_A: RNA polyme 89.4 0.21 4.6E-06 39.5 1.7 71 4-78 4-74 (109)
7 KOG0274 Cdc4 and related F-box 85.1 0.33 7.1E-06 48.9 0.6 52 2-53 106-157 (537)
8 KOG4408 Putative Mg2+ and Co2+ 85.0 0.28 6.1E-06 46.6 0.0 50 4-53 8-57 (386)
9 PLN03215 ascorbic acid mannose 83.7 0.79 1.7E-05 44.2 2.5 37 5-41 5-42 (373)
10 PF02018 CBM_4_9: Carbohydrate 82.3 20 0.00044 27.4 9.8 70 150-237 56-125 (131)
11 KOG3926 F-box proteins [Amino 80.5 0.81 1.7E-05 42.5 1.2 74 4-77 202-278 (332)
12 KOG2120 SCF ubiquitin ligase, 69.7 3.1 6.8E-05 39.6 2.1 42 5-46 99-140 (419)
13 KOG0281 Beta-TrCP (transducin 49.3 9.1 0.0002 37.0 1.4 45 2-46 73-121 (499)
14 PF13013 F-box-like_2: F-box-l 47.0 13 0.00028 29.8 1.7 40 4-45 22-61 (109)
15 KOG4114 Cytochrome c oxidase a 33.3 20 0.00044 26.6 0.8 16 5-20 39-54 (73)
16 PF12112 DUF3579: Protein of u 28.3 14 0.0003 28.9 -0.8 38 45-85 18-55 (92)
17 KOG3233 RNA polymerase III, su 24.0 18 0.00039 33.7 -1.0 44 94-145 137-184 (297)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1.8e-66 Score=437.48 Aligned_cols=152 Identities=49% Similarity=0.951 Sum_probs=144.5
Q ss_pred CCeeEEeecccceeeecCCCCceeEeeCCCCCcccceeeeeeeEEEEEEEEeeeecCCCceeEEEEEEEEccCcCCCCcc
Q 024966 97 GKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARR 176 (260)
Q Consensus 97 g~kCymLsAR~L~ItWgdd~~yW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~ 176 (260)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CeEEEEEEecCCcc--eeEEEEccCCcccccccccccCCeEEEEeeeEEecCCCCcEEEEEEEEEeCCcccccEEEEEEE
Q 024966 177 PVDSGVYIEGSDNG--VRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIE 254 (260)
Q Consensus 177 pv~~sv~~~~~g~~--~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~ev~fs~~e~~~~~wK~GLiv~Gie 254 (260)
||+++|++++ ++. +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+|||
T Consensus 81 pv~~~v~~~~-~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie 150 (154)
T PF14299_consen 81 PVEFSVKVPD-GEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE 150 (154)
T ss_pred CEEEEEEeCC-CccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence 9999999988 544 4556665 668899999999999999988999999999999999999999999999
Q ss_pred EEec
Q 024966 255 VRPK 258 (260)
Q Consensus 255 IRPk 258 (260)
||||
T Consensus 151 IRPK 154 (154)
T PF14299_consen 151 IRPK 154 (154)
T ss_pred EecC
Confidence 9998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=7.2e-09 Score=69.99 Aligned_cols=45 Identities=33% Similarity=0.590 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCC
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFL 48 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fl 48 (260)
+.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 468999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.35 E-value=1.6e-07 Score=63.19 Aligned_cols=44 Identities=36% Similarity=0.625 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF 47 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (260)
+.+||++++..|++++++.|.++++.||+.||.+++++..|..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 46899999999999999999999999999999999999999765
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.31 E-value=4.5e-07 Score=58.38 Aligned_cols=40 Identities=38% Similarity=0.590 Sum_probs=38.6
Q ss_pred cchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhcc
Q 024966 7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWEN 46 (260)
Q Consensus 7 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 46 (260)
||++++..|+++++|.|.+++++||+.||.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.56 E-value=0.041 Score=51.84 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred ccccchHHHHHHHccC-----ChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccc---cCCcHHHHHhh
Q 024966 4 TIALPAECISNIISLT-----TPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLI---TSLSKKDLYFH 75 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t-----~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~---~~~SkKely~~ 75 (260)
+..||++.+-.|+... +-++.-++|+||+.|+-+|..|.+|+.+|=.-|+.-+-...+-+. -..|-+++|..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 4689999998887654 459999999999999999999999999998777643322221110 13577888876
Q ss_pred hccCCEEecC
Q 024966 76 LCRNPIIINN 85 (260)
Q Consensus 76 L~~~~vlld~ 85 (260)
=. -|.+||
T Consensus 187 Rp--RvrFdG 194 (366)
T KOG2997|consen 187 RP--RVRFDG 194 (366)
T ss_pred Cc--ceeecc
Confidence 32 456655
No 6
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=89.41 E-value=0.21 Score=39.53 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=56.5
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhcc
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCR 78 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~ 78 (260)
+-++|.+.|.-||...+|....++-.-|+-+. -++|.+|.+|+=.||+.-..... |. +..|-+++|..+.+
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~~-~~-~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQK-PK-EPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhccc-cc-ccchHHHHHHHHHH
Confidence 45799999999999999999999999997654 46999999999999975222211 22 35689999999864
No 7
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.06 E-value=0.33 Score=48.86 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=46.7
Q ss_pred ccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcch
Q 024966 2 DITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYK 53 (260)
Q Consensus 2 ~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~ 53 (260)
|.+..||-+..-.|+++++|++.|.+++||+.|+..++.+.+|.+.+.....
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 6678899999999999999999999999999999999999999876665443
No 8
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=84.96 E-value=0.28 Score=46.60 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=45.1
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcch
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYK 53 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~ 53 (260)
+..||.+.+.++++++.++++.+.|+||+.+...++-+..|++++-.++.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~ 57 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL 57 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence 34788899999999999999999999999999999999999999955544
No 9
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=83.74 E-value=0.79 Score=44.19 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=34.1
Q ss_pred cccchHHHHHHHccC-ChhhhhhhhccChHHHhhhcCc
Q 024966 5 IALPAECISNIISLT-TPRDACRLSVVSPVFKSAADSD 41 (260)
Q Consensus 5 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa~sd 41 (260)
.+||+|.+..|..++ +..|..|+++||++.|+|+...
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 589999999999998 7999999999999999998863
No 10
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=82.32 E-value=20 Score=27.43 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=42.8
Q ss_pred eecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecCCcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCCC
Q 024966 150 RILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDD 229 (260)
Q Consensus 150 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~ 229 (260)
..|.||.+|.+.+-+|.... .++.+.+...+ +.... ..... .-.-.+.|.++++ +|... .+.
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~-~~~~~--~~~~~-------~~~~~~~W~~~s~-~ft~~-~~~ 117 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG------GTVSVSLRDED-GSPYN--WYTGQ-------TVTITGEWTKYSG-TFTAP-SDD 117 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS------EEEEEEEEESS-TTTEE--EEEEE-------EEEETSSEEEEEE-EEEEE-SSC
T ss_pred eEecCCCEEEEEEEEEeCCC------CEEEEEEEEcC-CCCcE--EEEEE-------EEECCCCcEEEEE-EEEEC-CCC
Confidence 34679999999999999874 56666666655 31111 11100 0012379999995 89887 445
Q ss_pred cEEEEEEE
Q 024966 230 GKLVCSLF 237 (260)
Q Consensus 230 ~ev~fs~~ 237 (260)
..+.|.+.
T Consensus 118 ~~~~l~~~ 125 (131)
T PF02018_consen 118 DTVRLYFE 125 (131)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 56766543
No 11
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=80.50 E-value=0.81 Score=42.50 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=53.7
Q ss_pred ccccchHHHHHHHccCC-hhhhhhhhccChHHHhhhcCchhhccCCCCcchh--hhcccccccccCCcHHHHHhhhc
Q 024966 4 TIALPAECISNIISLTT-PRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQ--IISNSVSSLITSLSKKDLYFHLC 77 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~--i~~~~~~p~~~~~SkKely~~L~ 77 (260)
+.|||++|+..||-+++ -+|.--+|.|-.++....+.+-+|...+--.|.+ |-......-.--.--|++|++|-
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLR 278 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHH
Confidence 45999999999999765 8999999999999999999999999888765532 33222100000122568888875
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.74 E-value=3.1 Score=39.63 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=40.0
Q ss_pred cccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhcc
Q 024966 5 IALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWEN 46 (260)
Q Consensus 5 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 46 (260)
..||++.+..|+|.+--.|.-++|.|++.|...|...++|..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 579999999999999999999999999999999999999954
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=49.25 E-value=9.1 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=39.6
Q ss_pred ccccccc----hHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhcc
Q 024966 2 DITIALP----AECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWEN 46 (260)
Q Consensus 2 ~~~~~Lp----e~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 46 (260)
|.++.|| +.....|||+++..+.|.+-.||+..+.+-+...+|.+
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 6788899 89999999999999999999999999988777666643
No 14
>PF13013 F-box-like_2: F-box-like domain
Probab=47.04 E-value=13 Score=29.81 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.8
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhc
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWE 45 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~ 45 (260)
+.|||+|.+..|..+-.+.+...+...++++|.+.+. .|.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 5689999999999999999999999999999988544 553
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=20 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.8
Q ss_pred cccchHHHHHHHccCC
Q 024966 5 IALPAECISNIISLTT 20 (260)
Q Consensus 5 ~~Lpe~ci~~ils~t~ 20 (260)
-+|||+|++.+=+|+.
T Consensus 39 ~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 39 KDVPEECIALMKAFLD 54 (73)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 3699999999988875
No 16
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=28.34 E-value=14 Score=28.89 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=18.2
Q ss_pred ccCCCCcchhhhcccccccccCCcHHHHHhhhccCCEEecC
Q 024966 45 ENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINN 85 (260)
Q Consensus 45 ~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~~~vlld~ 85 (260)
+.|=|+|+.+-+.+..+..+ +..+=-|..++ +|+++++
T Consensus 18 k~FRPSDWaERL~gvla~F~--~~~rl~Ys~~~-~P~~~~G 55 (92)
T PF12112_consen 18 KTFRPSDWAERLCGVLASFR--PDHRLSYSPYV-RPMVING 55 (92)
T ss_dssp -B-S-TTHHHHHHHTT-EE---SSSSEE--TTE-EE--BTT
T ss_pred CCcCCccHHHHHHHHHHccC--CCCceEecCcc-cceEECC
Confidence 45779999887777543332 11234488888 6888544
No 17
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=23.99 E-value=18 Score=33.71 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=30.1
Q ss_pred ecCCCeeEEeec--ccceeeecCCCCceeEeeCC--CCCcccceeeeeeeEEEEEE
Q 024966 94 PESGKKCYMVGT--KGLSIAWGDEPNHWILTSLP--ESRFPEVAELKYVWWFDVKA 145 (260)
Q Consensus 94 k~sg~kCymLsA--R~L~ItWgdd~~yW~W~~~~--~SrF~EVAeL~~VcWLeI~G 145 (260)
+++++|||||.. -..+||.|- |.+.. |+-|. +-|+++||.=+.-
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG~------WytDqdlDvEfI--e~L~~~c~~fl~~ 184 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGGT------WYTDQDLDVEFI--EVLKQICVRFLES 184 (297)
T ss_pred cCCCceEEEEecccccccccCCc------ccccccccHHHH--HHHHHHHHHHHHh
Confidence 568899999986 456788774 65544 45565 4588888854433
Done!