Query 024966
Match_columns 260
No_of_seqs 158 out of 353
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 5.5E-09 1.9E-13 71.1 4.3 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.5 4.6E-08 1.6E-12 89.6 3.5 75 4-78 5-94 (312)
3 2ovr_B FBW7, F-BOX/WD repeat p 98.1 1.3E-06 4.6E-11 79.9 2.9 49 1-49 16-64 (445)
4 2e31_A FBS1, F-box only protei 97.9 3.2E-06 1.1E-10 77.3 3.0 80 3-85 50-130 (297)
5 3v7d_B Cell division control p 97.9 3.5E-06 1.2E-10 77.1 2.0 48 1-48 12-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.8 2.7E-06 9.3E-11 77.9 0.6 51 1-51 8-62 (435)
7 2ast_B S-phase kinase-associat 96.7 0.00087 3E-08 59.1 3.7 44 4-47 9-52 (336)
8 2p1m_B Transport inhibitor res 95.6 0.0058 2E-07 57.9 3.2 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 93.7 0.033 1.1E-06 52.8 3.0 33 5-37 14-47 (592)
10 1dyo_A Endo-1,4-beta-xylanase 89.2 7.4 0.00025 31.2 12.6 94 150-259 63-157 (160)
11 4hfx_A Transcription elongatio 84.9 0.24 8.2E-06 37.9 0.7 65 6-78 12-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 60.3 88 0.003 30.0 11.9 93 149-258 77-169 (540)
13 3tes_A Tencon; fibronectin typ 24.8 99 0.0034 21.7 4.5 36 147-186 57-92 (98)
14 2l9d_A Uncharacterized protein 24.5 9.8 0.00033 29.4 -1.2 47 45-106 23-69 (108)
15 3qht_C Monobody YSMB-1; fibron 22.0 99 0.0034 21.4 4.0 34 147-181 60-94 (97)
16 2lde_A Sarafotoxin-I3; endothe 20.4 21 0.00071 20.6 -0.1 10 108-117 17-26 (26)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.77 E-value=5.5e-09 Score=71.08 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966 3 ITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF 47 (260)
Q Consensus 3 ~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (260)
.+.+||++++..|+++++|+|.+++++||+.|+.++.++.+|+++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 467899999999999999999999999999999999999999874
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.50 E-value=4.6e-08 Score=89.65 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=61.0
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcc---hhhhccccccc------------ccCCc
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDY---KQIISNSVSSL------------ITSLS 68 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy---~~i~~~~~~p~------------~~~~S 68 (260)
+.+||.+++.+|+||++|+|+||+|+||+.+|.+|+.+.+|+.||-.|+ +++...+.+.. ..+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~ 84 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD 84 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence 5689999999999999999999999999999999999999999998774 44554433111 02456
Q ss_pred HHHHHhhhcc
Q 024966 69 KKDLYFHLCR 78 (260)
Q Consensus 69 kKely~~L~~ 78 (260)
++.+|.+=|.
T Consensus 85 ~~~~y~~~~p 94 (312)
T 3l2o_B 85 YMAVYRMCCP 94 (312)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCh
Confidence 8999999884
No 3
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.07 E-value=1.3e-06 Score=79.90 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=46.3
Q ss_pred CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCC
Q 024966 1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLP 49 (260)
Q Consensus 1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP 49 (260)
+|.+..||++++..|++|++|.|.|++++||+.|+.+++++.+|++++-
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 5889999999999999999999999999999999999999999998764
No 4
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.95 E-value=3.2e-06 Score=77.26 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=59.9
Q ss_pred cccccchHHHHHHHccCChhhhh-hhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhccCCE
Q 024966 3 ITIALPAECISNIISLTTPRDAC-RLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPI 81 (260)
Q Consensus 3 ~~~~Lpe~ci~~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~~~v 81 (260)
.+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|++.|.+.. +......+. +..+-|.+|..--..-+
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~-~~~~Wk~~y~~~~~gRN 126 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADE-ERDHWQQFYFLSKRRRN 126 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC------CCSCHHHHHHHHHHCCC
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCC-CCCChhhhheheecccc
Confidence 46789999999999999999999 999999999999999999999877651 111100011 24568999987433456
Q ss_pred EecC
Q 024966 82 IINN 85 (260)
Q Consensus 82 lld~ 85 (260)
||.+
T Consensus 127 LL~N 130 (297)
T 2e31_A 127 LLRN 130 (297)
T ss_dssp CSSC
T ss_pred eeec
Confidence 6654
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.88 E-value=3.5e-06 Score=77.06 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=45.2
Q ss_pred CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcC-chhhccCC
Q 024966 1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADS-DSVWENFL 48 (260)
Q Consensus 1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fl 48 (260)
.|.+..||++++.+|+++++|+|.|++++||+.++.++++ +.+|++++
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4788999999999999999999999999999999999987 89998876
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.84 E-value=2.7e-06 Score=77.90 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=47.4
Q ss_pred CccccccchH----HHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCc
Q 024966 1 MDITIALPAE----CISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSD 51 (260)
Q Consensus 1 ~~~~~~Lpe~----ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d 51 (260)
.|++..||++ ++..|++|++|+|.|++++||+.||..++++.+|++++...
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 4889999999 99999999999999999999999999999999999887654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.73 E-value=0.00087 Score=59.14 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=40.3
Q ss_pred ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966 4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF 47 (260)
Q Consensus 4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (260)
+.+||++++..|+++++++|.++++.||+.|+.++.+...|..+
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 47899999999999999999999999999999999877788754
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.62 E-value=0.0058 Score=57.92 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=29.4
Q ss_pred ccccccchHHHHHHHccCC-hhhhhhhhccChHHHhh
Q 024966 2 DITIALPAECISNIISLTT-PRDACRLSVVSPVFKSA 37 (260)
Q Consensus 2 ~~~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~a 37 (260)
|++.+||++++.+|++|++ ++|++++|+||+.+|.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 8899999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.66 E-value=0.033 Score=52.78 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=31.3
Q ss_pred cccchHHHHHHHccC-ChhhhhhhhccChHHHhh
Q 024966 5 IALPAECISNIISLT-TPRDACRLSVVSPVFKSA 37 (260)
Q Consensus 5 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~a 37 (260)
.+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 379999999999999 899999999999999987
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=89.24 E-value=7.4 Score=31.24 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=56.3
Q ss_pred eecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecC-CcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCC
Q 024966 150 RILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGS-DNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGD 228 (260)
Q Consensus 150 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~-g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~ 228 (260)
..|.||++|.+..-+|+.+.. +...+.+++...+. |.. +...+.. -....++|.+++-|.|......
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~--~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~~ 130 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ--RYDTIDM-------KTVGPNQWVHLYNPQYRIPSDA 130 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE--EEEEEEE-------EEECSSCCEEEEEEEEECCTTC
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE--EEEEEee-------EEEcCCccEEEECcEEEeCCCC
Confidence 368899999999999997742 22234444444231 221 1222221 0123489999998899886542
Q ss_pred CcEEEEEEEEEeCCcccccEEEEEEEEEecC
Q 024966 229 DGKLVCSLFEFDSFITKRGLIIQGIEVRPKS 259 (260)
Q Consensus 229 ~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~ 259 (260)
..+.+-+ |. ..-..=+.|+.|.|.|..
T Consensus 131 -~~~~lyv-e~--~~~~~d~yiDdv~i~~~g 157 (160)
T 1dyo_A 131 -TDMYVYV-ET--ADDTINFYIDEAIGAVAG 157 (160)
T ss_dssp -EEEEEEE-EE--SSCCCCEEEEEEEEEETT
T ss_pred -CEEEEEE-EC--CCCCccEEEEEEEEEeCc
Confidence 2343322 32 234555899999999864
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=84.92 E-value=0.24 Score=37.86 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=40.0
Q ss_pred ccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhcc
Q 024966 6 ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCR 78 (260)
Q Consensus 6 ~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~ 78 (260)
..|-+.+.-||-..||....++=.-|+.+ +-++|-+|.+|+-.||..-. |. +..|-+++|.+|.+
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~-e~esWRelY~rl~~ 76 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE-EYESWREMYLRLQD 76 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC-SSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC-CCCCHHHHHHHHHH
Confidence 35788888899999999999999999965 56899999999999998432 21 35799999999975
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=60.32 E-value=88 Score=29.96 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=53.2
Q ss_pred eeecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecCCcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCC
Q 024966 149 TRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGD 228 (260)
Q Consensus 149 ~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~ 228 (260)
+..|.||++|....-+|. + |=...++.+++...+.+........+.. -....++|.+++ |.|.....
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~-------~~~~~g~Wt~L~-g~ft~p~~- 143 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIAT-------KDVVAGEWTEIS-AKYKAPKT- 143 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEE-------EEEETTCCEEEE-EEEECCTT-
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeE-------EEEeCCeeEEEE-eEEEecCC-
Confidence 446889999999999984 3 2122445555554221111112222211 012358999999 79987543
Q ss_pred CcEEEEEEEEEeCCcccccEEEEEEEEEec
Q 024966 229 DGKLVCSLFEFDSFITKRGLIIQGIEVRPK 258 (260)
Q Consensus 229 ~~ev~fs~~e~~~~~wK~GLiv~GieIRPk 258 (260)
...+++-+ |.. -..-+.|+.|.|.++
T Consensus 144 ~~~~~lyv-e~~---~~~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 144 AVNITLSI-TTD---STVDFIFDDVTITRK 169 (540)
T ss_dssp EEEEEEEE-EES---SCCCEEEEEEEEEEC
T ss_pred CeEEEEEE-EcC---CCCCEEEEEEEEecC
Confidence 23454433 332 345789999988764
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=24.84 E-value=99 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.021 Sum_probs=24.9
Q ss_pred EeeeecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEec
Q 024966 147 IETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186 (260)
Q Consensus 147 i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~ 186 (260)
+.-.-|.|+|.|.+.+.-.-. .|- +.|+...+..+|
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~---~g~-S~p~~~~~~~~~ 92 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKG---GHR-SNPLSAEFTTGG 92 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEET---TEE-BCCEEEEEECSS
T ss_pred EEECCCCCCCEEEEEEEEEeC---Ccc-cCCEEEEEEcCc
Confidence 344568999999987655443 243 488888888755
No 14
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=24.52 E-value=9.8 Score=29.41 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=28.9
Q ss_pred ccCCCCcchhhhcccccccccCCcHHHHHhhhccCCEEecCCcceEEEeecCCCeeEEeecc
Q 024966 45 ENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTK 106 (260)
Q Consensus 45 ~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~~~vlld~g~k~~wldk~sg~kCymLsAR 106 (260)
+.|=|+|+.+-+++..+..+ +..+=.|..++ +|..+++ -||.++.++
T Consensus 23 k~FRPSDWAERL~Gvma~F~--~~~rl~YSp~~-~P~~i~G------------vkcVvVd~~ 69 (108)
T 2l9d_A 23 KPFRPSDWVDRMCSTYASFG--ADRKLRYSPYL-KPRVIEG------------VRCLAVDLK 69 (108)
T ss_dssp CBCSCTTHHHHHHHTTCEEC--SSSSEECCTTE-EECCBTT------------BCCEEEETH
T ss_pred CCcCCchHHHHHhhHHHhcC--CCCcceeCCcc-cceeeCC------------eeEEEECcH
Confidence 46789999887776543332 12233477777 5777543 357776653
No 15
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=21.99 E-value=99 Score=21.41 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=20.4
Q ss_pred EeeeecCCCceeEEEEEEEEccCcCC-CCccCeEEE
Q 024966 147 IETRILSLRTNYTAYLVFKFVESKYG-FARRPVDSG 181 (260)
Q Consensus 147 i~~~~LSp~t~Y~ay~v~kl~d~~~G-w~~~pv~~s 181 (260)
+.-.-|.|+|.|.+.+.-.-..+ .| ....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G-~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYY-DLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEET-TEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCc-cCCCCCCCEEEe
Confidence 34456999999988766544432 23 234565544
No 16
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=20.43 E-value=21 Score=20.57 Aligned_cols=10 Identities=10% Similarity=0.435 Sum_probs=6.7
Q ss_pred ceeeecCCCC
Q 024966 108 LSIAWGDEPN 117 (260)
Q Consensus 108 L~ItWgdd~~ 117 (260)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 6777877764
Done!