Query 024967
Match_columns 260
No_of_seqs 172 out of 1616
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 5E-45 1.1E-49 321.2 27.3 243 3-249 5-261 (262)
2 KOG2620 Prohibitins and stomat 100.0 8E-47 1.7E-51 319.6 15.0 252 4-259 19-295 (301)
3 PRK11029 FtsH protease regulat 100.0 8.2E-39 1.8E-43 288.5 27.2 234 4-250 30-327 (334)
4 TIGR01932 hflC HflC protein. H 100.0 2.3E-36 5.1E-41 272.5 26.6 232 4-248 30-315 (317)
5 TIGR01933 hflK HflK protein. H 100.0 2E-36 4.3E-41 266.3 25.5 226 4-238 11-251 (261)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 4.7E-36 1E-40 261.0 23.3 214 4-224 11-241 (242)
7 PRK10930 FtsH protease regulat 100.0 1.4E-35 3E-40 274.4 26.2 223 4-236 107-344 (419)
8 COG0330 HflC Membrane protease 100.0 6.5E-33 1.4E-37 247.5 25.3 233 3-241 30-280 (291)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 6.9E-33 1.5E-37 244.4 22.7 215 4-225 25-266 (266)
10 cd03403 Band_7_stomatin_like B 100.0 3.8E-29 8.3E-34 213.8 21.6 195 4-236 8-214 (215)
11 KOG2621 Prohibitins and stomat 100.0 1.2E-29 2.7E-34 217.4 13.8 202 4-244 65-279 (288)
12 cd03406 Band_7_3 A subgroup of 99.9 1.4E-25 3E-30 198.1 21.3 169 4-175 15-211 (280)
13 cd03401 Band_7_prohibitin Band 99.9 1.8E-25 3.9E-30 188.5 17.7 166 4-180 12-194 (196)
14 cd03402 Band_7_2 A subgroup of 99.9 1E-23 2.3E-28 180.7 15.4 148 4-155 12-179 (219)
15 KOG3090 Prohibitin-like protei 99.8 2.5E-18 5.4E-23 143.5 15.6 206 3-239 48-274 (290)
16 PF01145 Band_7: SPFH domain / 99.8 1.4E-18 3.1E-23 143.4 11.8 148 6-156 12-178 (179)
17 smart00244 PHB prohibitin homo 99.8 7.5E-18 1.6E-22 136.7 13.9 132 5-139 14-159 (160)
18 KOG3083 Prohibitin [Posttransl 99.7 6.6E-17 1.4E-21 134.8 11.6 171 3-176 37-226 (271)
19 KOG2668 Flotillins [Intracellu 99.6 7.9E-14 1.7E-18 123.2 20.9 129 15-146 22-174 (428)
20 cd03399 Band_7_flotillin Band_ 99.5 4.1E-14 8.9E-19 111.5 9.5 103 34-137 2-125 (128)
21 cd03400 Band_7_1 A subgroup of 99.5 7.8E-13 1.7E-17 103.5 11.5 104 34-139 3-123 (124)
22 COG2268 Uncharacterized protei 99.4 6.5E-12 1.4E-16 118.5 18.7 162 10-173 58-248 (548)
23 KOG2962 Prohibitin-related mem 99.3 7.7E-10 1.7E-14 93.3 21.8 137 4-144 33-190 (322)
24 cd03408 Band_7_5 A subgroup of 99.3 3.9E-11 8.5E-16 101.7 11.3 133 5-139 27-206 (207)
25 cd02106 Band_7 The band 7 doma 99.1 2.3E-09 5E-14 82.0 11.6 103 36-139 4-120 (121)
26 KOG2620 Prohibitins and stomat 98.2 7E-07 1.5E-11 77.0 1.9 212 24-255 17-288 (301)
27 cd03407 Band_7_4 A subgroup of 98.0 2E-05 4.3E-10 69.5 8.6 53 148-200 150-202 (262)
28 PF13421 Band_7_1: SPFH domain 97.5 0.0017 3.7E-08 55.5 11.8 55 86-140 153-207 (211)
29 cd03405 Band_7_HflC Band_7_Hfl 97.4 0.00061 1.3E-08 59.0 7.7 48 151-198 162-209 (242)
30 PTZ00491 major vault protein; 97.1 0.0054 1.2E-07 61.4 11.9 85 45-130 531-642 (850)
31 PRK10930 FtsH protease regulat 97.1 0.007 1.5E-07 56.9 11.9 50 149-198 253-302 (419)
32 cd03404 Band_7_HflK Band_7_Hfl 96.9 0.0069 1.5E-07 53.3 9.6 50 150-199 185-234 (266)
33 COG4260 Membrane protease subu 96.8 0.011 2.4E-07 52.0 9.9 117 24-141 90-235 (345)
34 PRK11029 FtsH protease regulat 96.8 0.0061 1.3E-07 55.7 8.4 51 149-199 225-275 (334)
35 TIGR01932 hflC HflC protein. H 96.7 0.0068 1.5E-07 55.0 8.2 49 150-198 216-264 (317)
36 TIGR01933 hflK HflK protein. H 96.5 0.014 3.1E-07 51.2 8.2 39 149-187 179-217 (261)
37 COG0330 HflC Membrane protease 95.5 0.042 9.2E-07 48.9 6.9 54 146-200 178-231 (291)
38 COG2268 Uncharacterized protei 94.6 0.47 1E-05 45.9 11.4 73 165-239 412-492 (548)
39 PRK13665 hypothetical protein; 91.0 2 4.2E-05 37.9 8.9 98 34-134 125-232 (316)
40 PF12127 YdfA_immunity: SigmaW 89.9 1.9 4.1E-05 38.1 8.0 95 34-134 120-227 (316)
41 PRK01558 V-type ATP synthase s 89.0 4.1 9E-05 34.3 9.4 46 133-178 9-54 (198)
42 PRK01558 V-type ATP synthase s 88.4 2 4.3E-05 36.3 7.1 38 153-190 20-57 (198)
43 TIGR01147 V_ATP_synt_G vacuola 88.2 4.1 8.9E-05 31.3 8.0 47 135-181 7-53 (113)
44 cd03401 Band_7_prohibitin Band 86.9 1.2 2.7E-05 36.9 4.9 25 168-192 171-195 (196)
45 PRK02292 V-type ATP synthase s 86.2 6.6 0.00014 32.6 8.9 44 135-178 5-48 (188)
46 COG2811 NtpF Archaeal/vacuolar 85.8 13 0.00029 28.2 10.0 43 134-176 7-49 (108)
47 KOG2668 Flotillins [Intracellu 85.7 2.8 6.1E-05 38.3 6.7 82 152-238 297-384 (428)
48 COG1580 FliL Flagellar basal b 84.7 12 0.00026 30.5 9.4 51 75-126 104-156 (159)
49 cd03403 Band_7_stomatin_like B 84.2 1.6 3.6E-05 36.7 4.4 15 29-43 11-25 (215)
50 PLN03086 PRLI-interacting fact 83.4 3.1 6.7E-05 40.7 6.4 17 217-236 81-97 (567)
51 cd03406 Band_7_3 A subgroup of 82.6 2.1 4.5E-05 38.2 4.6 35 149-183 166-208 (280)
52 PRK01005 V-type ATP synthase s 80.5 16 0.00034 31.2 9.0 36 147-182 30-65 (207)
53 PRK01005 V-type ATP synthase s 80.2 9.8 0.00021 32.4 7.6 7 232-238 132-138 (207)
54 PRK08404 V-type ATP synthase s 79.7 19 0.00041 27.0 8.3 37 134-170 3-39 (103)
55 KOG3090 Prohibitin-like protei 74.7 7.1 0.00015 33.6 5.2 34 133-166 205-238 (290)
56 PTZ00491 major vault protein; 71.9 25 0.00055 36.0 9.0 16 163-178 720-735 (850)
57 PF03179 V-ATPase_G: Vacuolar 71.9 9.5 0.00021 28.5 4.9 46 136-181 6-51 (105)
58 KOG3083 Prohibitin [Posttransl 71.5 8.2 0.00018 33.2 4.8 64 160-239 199-264 (271)
59 PRK07718 fliL flagellar basal 69.1 51 0.0011 26.1 8.8 50 75-126 88-139 (142)
60 PF03748 FliL: Flagellar basal 68.9 41 0.00089 24.3 9.6 50 75-126 45-96 (99)
61 PRK09098 type III secretion sy 67.4 26 0.00055 30.4 7.2 28 150-177 45-72 (233)
62 PRK14471 F0F1 ATP synthase sub 65.0 72 0.0016 25.7 9.3 14 89-102 33-47 (164)
63 PRK06231 F0F1 ATP synthase sub 63.3 91 0.002 26.3 9.7 33 152-184 126-158 (205)
64 TIGR03321 alt_F1F0_F0_B altern 63.3 85 0.0018 27.2 9.8 31 152-182 83-113 (246)
65 PF03179 V-ATPase_G: Vacuolar 63.2 23 0.0005 26.4 5.5 42 149-190 8-49 (105)
66 TIGR01147 V_ATP_synt_G vacuola 62.3 23 0.00051 27.1 5.3 40 146-185 7-46 (113)
67 PRK09173 F0F1 ATP synthase sub 62.2 71 0.0015 25.5 8.6 9 89-97 27-35 (159)
68 COG2811 NtpF Archaeal/vacuolar 61.7 45 0.00098 25.4 6.6 20 179-198 69-88 (108)
69 PRK06568 F0F1 ATP synthase sub 61.5 78 0.0017 25.6 8.5 13 210-222 128-140 (154)
70 PRK08475 F0F1 ATP synthase sub 61.1 74 0.0016 25.9 8.5 9 89-97 47-55 (167)
71 PRK08404 V-type ATP synthase s 60.9 45 0.00098 25.0 6.6 23 156-178 40-62 (103)
72 PF06188 HrpE: HrpE/YscL/FliH 60.8 27 0.00059 29.2 6.0 31 143-173 29-59 (191)
73 PRK15322 invasion protein OrgB 60.8 1E+02 0.0023 26.1 10.5 31 204-238 90-120 (210)
74 CHL00118 atpG ATP synthase CF0 60.7 86 0.0019 25.1 9.7 9 89-97 47-55 (156)
75 PRK14472 F0F1 ATP synthase sub 58.2 1E+02 0.0022 25.1 9.8 14 89-102 43-57 (175)
76 PRK14474 F0F1 ATP synthase sub 58.1 1.2E+02 0.0026 26.5 9.8 29 152-180 83-111 (250)
77 CHL00118 atpG ATP synthase CF0 58.0 91 0.002 24.9 8.5 14 162-175 84-97 (156)
78 PRK06231 F0F1 ATP synthase sub 57.8 1.2E+02 0.0025 25.7 9.8 18 172-189 135-152 (205)
79 PRK13453 F0F1 ATP synthase sub 57.6 1E+02 0.0023 25.1 9.7 9 89-97 43-51 (173)
80 PRK08476 F0F1 ATP synthase sub 56.7 97 0.0021 24.4 9.7 26 160-185 82-107 (141)
81 PRK07352 F0F1 ATP synthase sub 56.5 96 0.0021 25.2 8.5 14 89-102 44-58 (174)
82 PRK13460 F0F1 ATP synthase sub 55.6 1E+02 0.0022 25.1 8.5 14 89-102 41-55 (173)
83 PRK01194 V-type ATP synthase s 55.2 1.1E+02 0.0025 25.3 8.8 7 152-158 22-28 (185)
84 PRK13460 F0F1 ATP synthase sub 54.7 1.2E+02 0.0025 24.8 9.7 18 159-176 101-118 (173)
85 PF06188 HrpE: HrpE/YscL/FliH 54.6 43 0.00092 28.0 6.1 22 141-162 38-59 (191)
86 PRK14475 F0F1 ATP synthase sub 54.2 1.2E+02 0.0025 24.6 9.7 15 89-103 35-50 (167)
87 PRK09174 F0F1 ATP synthase sub 54.1 1.4E+02 0.0029 25.3 9.8 9 89-97 78-86 (204)
88 TIGR02926 AhaH ATP synthase ar 53.9 74 0.0016 22.7 6.6 29 142-170 7-35 (85)
89 CHL00019 atpF ATP synthase CF0 52.4 1.3E+02 0.0029 24.7 9.8 31 152-182 102-132 (184)
90 PRK06568 F0F1 ATP synthase sub 50.9 1.3E+02 0.0029 24.3 9.3 9 89-97 29-37 (154)
91 PRK13428 F0F1 ATP synthase sub 50.9 1.2E+02 0.0027 28.8 9.3 23 212-236 145-167 (445)
92 PRK14473 F0F1 ATP synthase sub 48.6 1.4E+02 0.0031 23.9 8.5 9 89-97 33-41 (164)
93 PRK13461 F0F1 ATP synthase sub 48.4 1.4E+02 0.003 23.8 9.8 10 88-97 29-38 (159)
94 PRK13454 F0F1 ATP synthase sub 47.2 1.6E+02 0.0034 24.3 8.4 11 88-98 55-65 (181)
95 PRK13453 F0F1 ATP synthase sub 47.1 1.6E+02 0.0034 24.0 9.7 15 160-174 104-118 (173)
96 TIGR01144 ATP_synt_b ATP synth 46.8 1.4E+02 0.003 23.4 8.5 7 91-97 22-28 (147)
97 PRK05759 F0F1 ATP synthase sub 46.4 1.5E+02 0.0031 23.5 9.8 9 89-97 29-37 (156)
98 PRK13461 F0F1 ATP synthase sub 46.3 1.4E+02 0.0031 23.8 7.8 16 160-175 91-106 (159)
99 TIGR02926 AhaH ATP synthase ar 45.3 1.1E+02 0.0024 21.8 7.3 13 163-175 43-55 (85)
100 CHL00019 atpF ATP synthase CF0 45.2 1.4E+02 0.003 24.5 7.8 9 89-97 49-57 (184)
101 KOG0742 AAA+-type ATPase [Post 44.4 1.8E+02 0.0039 27.9 8.9 21 160-180 208-228 (630)
102 PRK08476 F0F1 ATP synthase sub 44.1 1.6E+02 0.0034 23.2 8.5 7 91-97 34-40 (141)
103 PRK09098 type III secretion sy 44.0 1.2E+02 0.0026 26.2 7.4 35 146-180 50-84 (233)
104 PRK07353 F0F1 ATP synthase sub 44.0 1.5E+02 0.0033 22.9 9.7 9 89-97 30-38 (140)
105 PF05282 AAR2: AAR2 protein; 43.9 14 0.0003 34.1 1.7 23 2-26 24-46 (362)
106 KOG1772 Vacuolar H+-ATPase V1 43.3 1.2E+02 0.0027 22.9 6.3 44 136-179 8-51 (108)
107 PRK07021 fliL flagellar basal 42.6 1.8E+02 0.0039 23.4 9.3 52 75-126 104-159 (162)
108 PRK06669 fliH flagellar assemb 42.4 1.5E+02 0.0034 26.1 8.1 24 147-170 91-114 (281)
109 PRK15322 invasion protein OrgB 39.8 1.2E+02 0.0026 25.7 6.5 25 151-175 19-43 (210)
110 PRK06569 F0F1 ATP synthase sub 39.7 2E+02 0.0044 23.3 8.4 8 217-224 126-133 (155)
111 PRK05759 F0F1 ATP synthase sub 39.6 1.9E+02 0.0041 22.8 7.8 23 154-176 84-106 (156)
112 PRK05697 flagellar basal body- 39.5 91 0.002 24.6 5.6 52 75-126 79-134 (137)
113 PRK03963 V-type ATP synthase s 39.0 1.8E+02 0.0039 24.0 7.6 6 230-235 120-125 (198)
114 PRK09173 F0F1 ATP synthase sub 37.5 2.1E+02 0.0046 22.8 9.7 8 160-167 73-80 (159)
115 PRK06669 fliH flagellar assemb 34.9 1.6E+02 0.0036 25.9 7.1 40 143-182 76-115 (281)
116 PRK13455 F0F1 ATP synthase sub 33.2 2.7E+02 0.0059 22.8 9.7 14 89-102 52-66 (184)
117 PRK06654 fliL flagellar basal 32.4 3E+02 0.0064 23.0 8.6 49 75-126 128-176 (181)
118 PRK12785 fliL flagellar basal 31.6 1.3E+02 0.0028 24.5 5.4 50 75-126 112-163 (166)
119 TIGR03321 alt_F1F0_F0_B altern 29.5 3.7E+02 0.008 23.2 13.1 10 214-223 150-159 (246)
120 PRK08455 fliL flagellar basal 29.5 1.5E+02 0.0031 24.7 5.5 50 75-126 128-179 (182)
121 KOG3937 mRNA splicing factor [ 28.4 31 0.00068 31.6 1.4 23 2-26 34-56 (371)
122 PF01991 vATP-synt_E: ATP synt 27.2 2.2E+02 0.0047 23.2 6.3 7 230-236 114-120 (198)
123 PHA00448 hypothetical protein 27.0 2.2E+02 0.0047 19.7 5.0 32 164-195 27-58 (70)
124 COG0711 AtpF F0F1-type ATP syn 27.0 3.4E+02 0.0073 21.9 8.8 63 130-192 29-98 (161)
125 PRK05696 fliL flagellar basal 27.0 1.9E+02 0.004 23.6 5.6 52 75-126 112-167 (170)
126 PTZ00399 cysteinyl-tRNA-synthe 26.7 6.7E+02 0.015 25.3 10.9 37 104-140 520-561 (651)
127 TIGR02499 HrpE_YscL_not type I 26.5 1.6E+02 0.0035 23.3 5.2 6 230-235 115-120 (166)
128 TIGR03825 FliH_bacil flagellar 26.2 2.2E+02 0.0049 24.7 6.4 6 219-224 167-172 (255)
129 PF12037 DUF3523: Domain of un 25.5 4.1E+02 0.0089 23.7 7.8 11 216-226 211-221 (276)
130 COG4864 Uncharacterized protei 23.7 3E+02 0.0065 23.9 6.3 44 88-134 187-231 (328)
131 PF06635 NolV: Nodulation prot 22.0 5E+02 0.011 22.1 8.9 17 219-236 122-138 (207)
132 PF05103 DivIVA: DivIVA protei 21.1 32 0.00069 26.3 0.0 27 164-190 83-109 (131)
133 PF11740 KfrA_N: Plasmid repli 21.1 3.6E+02 0.0077 20.0 7.8 20 122-141 53-72 (120)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5e-45 Score=321.17 Aligned_cols=243 Identities=51% Similarity=0.684 Sum_probs=222.8
Q ss_pred eecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecc-----hhhhHHH--
Q 024967 3 VVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS-----HAIYDLL-- 74 (260)
Q Consensus 3 ~v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~-----~a~y~v~-- 74 (260)
.|..||| +|+++++|||||++||++++...++++.+.++++. .+.|+|++. +.+| .+.|.+. +++|++.
T Consensus 5 ~Vv~rfG-k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~-V~vd~~v~yrI~d~~~~~~~~~~~~~ 81 (262)
T cd03407 5 AIIERFG-KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVF-VTVVGQIQYRVSEENATDAFYKLGNP 81 (262)
T ss_pred EEEeecC-cccccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCE-EEEEEEEEEEECCcHHHHHHHHcCCH
Confidence 4778999 79999999999999999998766999999999987 479999998 8888 4544433 5688765
Q ss_pred ------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHH
Q 024967 75 ------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA 148 (260)
Q Consensus 75 ------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a 148 (260)
.+.+++|+++|++++++++++|++|+..+.+.+++.+++|||.|.+|.|+++.||++++++|++++.|+|++++
T Consensus 82 ~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a 161 (262)
T cd03407 82 EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVA 161 (262)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccC
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAAS 228 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 228 (260)
.+.+||+++.+.+.+|+|++++.+++|+|+|++.++.|+|+++++..++++++..+.+++.++++..+|+|+|+++++++
T Consensus 162 ~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~ 241 (262)
T cd03407 162 AVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSS 241 (262)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999886667788889999999999999999655
Q ss_pred CCcEEEEcCCCCchhhHHHHH
Q 024967 229 KSSAVFIPHGPGAVRDVATQI 249 (260)
Q Consensus 229 ~~~~v~lp~~~~~~~~~~~~~ 249 (260)
+ +++++|.+++++.+++.++
T Consensus 242 ~-kviv~p~~~~~~~~~~~~~ 261 (262)
T cd03407 242 S-TVVFRPHGPGGAQDIYAQI 261 (262)
T ss_pred C-CEEEecCCCccHHHHHHhc
Confidence 5 8899999999999988765
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=8e-47 Score=319.55 Aligned_cols=252 Identities=36% Similarity=0.508 Sum_probs=232.7
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-e---EEeecch--hhhHHH---
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-I---CLVHHSH--AIYDLL--- 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~---~~~~~~~--a~y~v~--- 74 (260)
|+.||| +|+++++||+||+|||+++....+++++..+..|.++..|+|||. +.+| + .+++|++ ++|+++
T Consensus 19 VvER~G-kF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~-v~idgvly~rv~dp~~~dAsYgvenp~ 96 (301)
T KOG2620|consen 19 VVERFG-KFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVF-VQIDGVLYYRVVDPYADDASYGVENPE 96 (301)
T ss_pred HHHHhh-hhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEE-EEEEEEEEEEEecccccccccccCCHH
Confidence 788999 699999999999999999999989999999999999999999998 7888 3 2367776 899987
Q ss_pred -----HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHH
Q 024967 75 -----VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAA 149 (260)
Q Consensus 75 -----~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~ 149 (260)
|+++.+|+.+++++||.+|..|+.|+..+.+.+++.++.||+++.+.+|+||.||+.++.+|+.+..|+|.++|.
T Consensus 97 ~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAa 176 (301)
T KOG2620|consen 97 YAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAA 176 (301)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCC-----------CchhhhhHHHHHHHHH
Q 024967 150 NEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPG-----------TTAKDVMDMVLVTQYF 218 (260)
Q Consensus 150 ~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~-----------~~~~~~~~~~~~~~~l 218 (260)
+.++||+|+++|.+|||++++.++..+|.+..+.+.+.|+++++..++++.+. .+..++.+|+.+.+|+
T Consensus 177 ilesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyI 256 (301)
T KOG2620|consen 177 ILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYI 256 (301)
T ss_pred HhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777543 2355567889999999
Q ss_pred HHHHHHhccCCCcEEEEcCCCCchhhHHHHHHHHHHhhhhc
Q 024967 219 DTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQH 259 (260)
Q Consensus 219 ~~l~~~~~~~~~~~v~lp~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.++.+++ +.++++|||++|+..+|+..|...++..+++.
T Consensus 257 gaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 257 GAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred Hhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 9999998 46778999999999999999999999988763
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=8.2e-39 Score=288.46 Aligned_cols=234 Identities=15% Similarity=0.131 Sum_probs=203.6
Q ss_pred ecccccceeec-------eecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecc---hhhhH
Q 024967 4 VKPRLRTMYLS-------MLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS---HAIYD 72 (260)
Q Consensus 4 v~~r~~~~~~~-------~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~---~a~y~ 72 (260)
|.-|||. |.+ .++|||||++||++++.+ +|+|.+.++++++.++|+|+.. +.+| .+.|++. ++++.
T Consensus 30 VV~rFGk-~~~~~~~~~~~l~PGLhf~iPfid~V~~-vdvR~q~~d~~~~~vlT~D~~~-V~VD~~V~yrI~Dp~~~~~~ 106 (334)
T PRK11029 30 IVLRFGK-VLRDDDNKPLVYAPGLHFKIPFIETVKM-LDARIQTMDNQADRFVTKEKKD-LIVDSYIKWRISDFSRYYLA 106 (334)
T ss_pred EEEECCc-eeccccccccccCCceEEEcCCceEEEE-EeeEEEEeeCCCceEEcCCCCE-EEEEEEEEEEECCHHHHHHH
Confidence 4457885 554 489999999999999987 9999999999999999999998 7889 5555554 44443
Q ss_pred H-----H--------HhHHHHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHH----------------------------
Q 024967 73 L-----L--------VNCSVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKA---------------------------- 110 (260)
Q Consensus 73 v-----~--------~~~~alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~---------------------------- 110 (260)
. . .+.+++|+++|+++++++++ +|++|...+++.+++.
T Consensus 107 ~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (334)
T PRK11029 107 TGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAET 186 (334)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhccccc
Confidence 2 1 35699999999999999997 7999999999999864
Q ss_pred -----------hhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhH
Q 024967 111 -----------MSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIA 179 (260)
Q Consensus 111 -----------~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a 179 (260)
+.+|||+|.+|.|+++.||+++.++|+++|.|||+++|...+|||++.+..++|+|++++.++.|+|++
T Consensus 187 ~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 187 KGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred ccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCchhhHHHHHH
Q 024967 180 RQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIR 250 (260)
Q Consensus 180 ~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~lp~~~~~~~~~~~~~~ 250 (260)
++.+++|+|+|++++.+++++.. +| +++.+++||++|+++++ +++++++||.+. ++|..++
T Consensus 267 ~a~i~~aegeA~a~~~~~~a~~~--~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~~~----~~~~~l~ 327 (334)
T PRK11029 267 QGRIMRGEGDAEAAKLFADAFSQ--DP---DFYAFIRSLRAYENSFS-GNQDVMVLSPDS----DFFRYMK 327 (334)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHHHHhc-CCCcEEEECCCh----HHHHHhh
Confidence 99999999999999999999953 33 68999999999999994 455788998543 6777764
No 4
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=2.3e-36 Score=272.50 Aligned_cols=232 Identities=12% Similarity=0.084 Sum_probs=197.7
Q ss_pred ecccccceeece-------ecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecc---hhhhH
Q 024967 4 VKPRLRTMYLSM-------LLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS---HAIYD 72 (260)
Q Consensus 4 v~~r~~~~~~~~-------~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~---~a~y~ 72 (260)
|.-|||+ +.+. ++|||||++||++++.+ +|++.+.++.+++.++|+|++. +.+| .+.|++. +.+++
T Consensus 30 Vv~~fGk-~~~~~~~~~~v~~pGlhf~~P~i~~v~~-vd~r~q~~~~~~~~vlTkD~~~-V~Vd~~V~yrV~d~~~~~~~ 106 (317)
T TIGR01932 30 IITRFGK-ILKDNNHHVLVYEPGLHFKIPFIEHVKI-FDAKIQTMDGRPDRIPTKEKKD-IIIDTYIRWRIEDFKKYYLS 106 (317)
T ss_pred EEEecCc-eeccccccccccCCCeEEEeccccEEEE-eeeeEEEecCCcceeECCCCCE-EEEEEEEEEEECCHHHHHHH
Confidence 3457874 5443 47999998888999987 9999999999999999999998 7788 4555554 34443
Q ss_pred HH-------------HhHHHHHHHcccCcHhHHHhh-HHHH-----------------------------HHHHHHHHHH
Q 024967 73 LL-------------VNCSVIRASIPKLNLDDAFEQ-KNEI-----------------------------AKAVEEELEK 109 (260)
Q Consensus 73 v~-------------~~~~alR~vi~~~~l~ei~~~-R~~i-----------------------------~~~i~~~l~~ 109 (260)
+. .+.+++|+++|++++++++++ |++| ...+.+.+.+
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~ 186 (317)
T TIGR01932 107 TGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANS 186 (317)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHH
Confidence 21 457999999999999999974 6555 5577778888
Q ss_pred HhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhh
Q 024967 110 AMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGL 189 (260)
Q Consensus 110 ~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~ 189 (260)
.+.+|||+|++|.|+++.||++++++|++++.|+|+++|...++||++.+..++|+|++++.++.|+|++++.+++|+|+
T Consensus 187 ~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aege 266 (317)
T TIGR01932 187 QLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGD 266 (317)
T ss_pred HHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCchhhHHHH
Q 024967 190 RDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQ 248 (260)
Q Consensus 190 a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~lp~~~~~~~~~~~~ 248 (260)
|++++++++++.. +| +++.+++||++|+++++ ++++++++|.++ +||..
T Consensus 267 a~a~~~~~~a~~~--~p---~~~~~~~~le~~~~~~~-~~~~~~vl~~~~----~~~~~ 315 (317)
T TIGR01932 267 AEAAKIYSDAYGK--DP---EFYSFWRSLEAYEKSFK-DNQDEKVLSTDS----EFFQY 315 (317)
T ss_pred HHHHHHHHHHHcc--CH---HHHHHHHHHHHHHHHhC-CCCCEEEECCCc----HHHHh
Confidence 9999999999963 44 67788999999999994 566788998443 56654
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=2e-36 Score=266.34 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=196.1
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH-----
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL----- 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~----- 74 (260)
|..||| ++.++++||+||++||++++.. +|++......++..++|+|++. +.+| .+.| +|.+++|++.
T Consensus 11 Vv~~fG-k~~~~l~pGl~~~~P~i~~v~~-~~~~~~~~~~~~~~v~T~D~~~-v~vd~~v~yrI~d~~~~~~~~~~~~~~ 87 (261)
T TIGR01933 11 VVLRFG-KYHRTVDPGLNWKPPFIEEVYP-VNVTAVRNLRKQGLMLTGDENI-VNVEMNVQYRITDPYKYLFSVENPEDS 87 (261)
T ss_pred EEEEcC-ccccccCCcceEECCCceEEEE-eeeEEEEecCCcCeEEeCCCCE-EEEEEEEEEEECCHHHHHHhCCCHHHH
Confidence 445888 5889999999998888998876 8887644222445689999998 8888 4444 4556666655
Q ss_pred ---HhHHHHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHH
Q 024967 75 ---VNCSVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA 148 (260)
Q Consensus 75 ---~~~~alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a 148 (260)
.+.+++|+++|+++++++++ +|++|...+.+.+++.++.| ||+|++|.|+++.||++++++|++++.|++++++
T Consensus 88 l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~ 167 (261)
T TIGR01933 88 LRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEER 167 (261)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998 89999999999999999976 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccC
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAAS 228 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 228 (260)
.+.+||++++..+.+|+|++++.+++|+|++++.+++|+|+++++..+++++.. +| +++.+++|+++|++++ ++
T Consensus 168 ~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~le~~~~~~-~~ 241 (261)
T TIGR01933 168 YINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLYLETMEKVL-SN 241 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHHHHHHHHHH-cc
Confidence 999999999999999999999999999999999999999999999999999852 33 6788889999999999 35
Q ss_pred CCcEEEEcCC
Q 024967 229 KSSAVFIPHG 238 (260)
Q Consensus 229 ~~~~v~lp~~ 238 (260)
++++++++.+
T Consensus 242 ~~~~~~~~~~ 251 (261)
T TIGR01933 242 TRKVLLDDKK 251 (261)
T ss_pred CCeEEEECCC
Confidence 6667788744
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=4.7e-36 Score=260.98 Aligned_cols=214 Identities=15% Similarity=0.127 Sum_probs=188.5
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeec---chhhhHHH-----
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHH---SHAIYDLL----- 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~---~~a~y~v~----- 74 (260)
|.-|||.....+++||+||.+||++++.. +|++.+.++++++.+.|+|++. +.+| .+.+.+ .++++.+.
T Consensus 11 Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~-v~~r~~~~~~~~~~v~T~D~~~-v~v~~~v~yrI~d~~~~~~~~~~~~~~ 88 (242)
T cd03405 11 VVLRFGEVVRVVTEPGLHFKLPFIQQVKK-FDKRILTLDSDPQRVLTKDKKR-LIVDAYAKWRITDPLRFYQAVGGEERA 88 (242)
T ss_pred EEEEcCccccccCCCCeeEEcCCcceEEE-EcCEEEeccCCcceEEccCCcE-EEEEEEEEEEEcCHHHHHHHhcChHHH
Confidence 44588853344799999998888888776 9999999999999999999998 7788 344433 33333322
Q ss_pred -------HhHHHHHHHcccCcHhHHHhh-HHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHH
Q 024967 75 -------VNCSVIRASIPKLNLDDAFEQ-KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 146 (260)
Q Consensus 75 -------~~~~alR~vi~~~~l~ei~~~-R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~ 146 (260)
.+.+++|+++|++++++++++ |++|.+.+++.+++.+++|||+|.++.|++|.||+++.++|++++.|+|++
T Consensus 89 ~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~ 168 (242)
T cd03405 89 AETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERER 168 (242)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHH
Q 024967 147 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEI 224 (260)
Q Consensus 147 ~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~ 224 (260)
++...+|||++++.+++|++++++.++.|+|+|++.+++|+|+|++++.+++++.. +| +++.+++||++|+.+
T Consensus 169 ~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p---~~~~~~~~l~~~~~~ 241 (242)
T cd03405 169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DP---EFYAFYRSLEAYRNS 241 (242)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999964 45 567888999999875
No 7
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.4e-35 Score=274.36 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=194.1
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH-----
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL----- 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~----- 74 (260)
|.-||| +|.++++|||||.+||++++.+ ++++......+++.++|+|+.. +.+| .+.| +|.+++|.+.
T Consensus 107 VV~rFG-k~~~~l~PGLhfk~PfId~V~~-vdv~~~~~~~~~~~mLT~D~n~-V~Vd~~VqYrI~Dp~~~lf~v~~~~~~ 183 (419)
T PRK10930 107 VVTRFG-KFSHLVEPGLNWKPTFIDEVKP-VNVEAVRELAASGVMLTSDENV-VRVEMNVQYRVTDPEKYLFSVTSPDDS 183 (419)
T ss_pred EEEECC-cCcceeCCceEEecCceEEEEE-EEeEEEEEccCcceeECCCCCE-EEEEEEEEEEECCHHHHHHhccCHHHH
Confidence 445888 5889999999999999999987 8887766555788999999987 7888 4444 5556677765
Q ss_pred ---HhHHHHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHH
Q 024967 75 ---VNCSVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA 148 (260)
Q Consensus 75 ---~~~~alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a 148 (260)
.+.++||+++|+++++++++ +|++|...+++.+++.+++| ||+|.+|.|+++.||+++++||++.+.|++++++
T Consensus 184 L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~ 263 (419)
T PRK10930 184 LRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQ 263 (419)
T ss_pred HHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998 69999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccC
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAAS 228 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 228 (260)
.+.+||++++..+.+|+|++++++.+|+|++++.+++|+|+|+++..++.+|.. +| +++-...|||+|+++++
T Consensus 264 ~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP---~vtr~RlYletme~vl~-- 336 (419)
T PRK10930 264 YIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA--AP---EITRERLYIETMEKVLG-- 336 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CH---HHHHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999999999999999998887778853 44 46666779999999994
Q ss_pred CCcEEEEc
Q 024967 229 KSSAVFIP 236 (260)
Q Consensus 229 ~~~~v~lp 236 (260)
+.+.|++.
T Consensus 337 ~~~kvivd 344 (419)
T PRK10930 337 HTRKVLVN 344 (419)
T ss_pred cCCEEEEe
Confidence 33334443
No 8
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-33 Score=247.52 Aligned_cols=233 Identities=25% Similarity=0.342 Sum_probs=200.6
Q ss_pred eecccccceeeceec-ccceeecce---eEEEEEEeeccceeccc-CCceeeEeeeEEEEEee-eEEe---ecchhhhHH
Q 024967 3 VVKPRLRTMYLSMLL-HLFNTVPWH---IRQMMLSINSATQGLKF-RPMSLMVKYIYLFKTID-ICLV---HHSHAIYDL 73 (260)
Q Consensus 3 ~v~~r~~~~~~~~~~-PGl~~~~~~---i~~~~~~vd~r~~~~~~-~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v 73 (260)
.|..||| .|.+.+. ||+||++|| ++.....++.+.+++++ |++.+.|+|+.. +.+| .+.+ ++..++|.+
T Consensus 30 ~vv~r~G-~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~-V~vd~~v~~rv~d~~~~~~~v 107 (291)
T COG0330 30 GVVLRFG-RYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI-VSVDAVVQYRVTDPQKAVYNV 107 (291)
T ss_pred EEEEEec-ceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE-EEEEEEEEEEEcCHHHHHHhc
Confidence 3566888 5888888 999997777 56665569999999999 899999999996 8899 4444 444566665
Q ss_pred H--------HhHHHHHHHcccCcHhHHHhhHH-HHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHH
Q 024967 74 L--------VNCSVIRASIPKLNLDDAFEQKN-EIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAAR 144 (260)
Q Consensus 74 ~--------~~~~alR~vi~~~~l~ei~~~R~-~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~ 144 (260)
. ++.+.+|+++|++++++++++|. .|+..+.+.+++.+++|||.|.+|.|+++.||+++..+|+++|.|||
T Consensus 108 ~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer 187 (291)
T COG0330 108 ENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAER 187 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 5 67899999999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHH
Q 024967 145 LRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEI 224 (260)
Q Consensus 145 ~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~ 224 (260)
++++.+.+||+++++.+.+|+|++++.++.+||++.+ ...++|++++++.+++++.+ .....++.+++|++.+.+.
T Consensus 188 ~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~ 263 (291)
T COG0330 188 DKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQALAQRYLEELLEI 263 (291)
T ss_pred HHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 44555555577888887753 2334688999999999999
Q ss_pred hccCCCcEEEEcCCCCc
Q 024967 225 GAASKSSAVFIPHGPGA 241 (260)
Q Consensus 225 ~~~~~~~~v~lp~~~~~ 241 (260)
+.+++++++++|.+..+
T Consensus 264 ~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 264 ALAGNSKVVVVPNSAGG 280 (291)
T ss_pred hhCCCCeEEEecCCccc
Confidence 97667888899976554
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=6.9e-33 Score=244.41 Aligned_cols=215 Identities=20% Similarity=0.198 Sum_probs=182.6
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeecc------------ceecccCCceeeEeeeEEEEEee-eEEe---ecc
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSA------------TQGLKFRPMSLMVKYIYLFKTID-ICLV---HHS 67 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r------------~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~ 67 (260)
|.-|||+ +.++++||+||++||++++..+++++ ......++..+.|+|++. +.+| .+.+ +|.
T Consensus 25 VV~~fGk-~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~-v~vd~~v~yrI~d~~ 102 (266)
T cd03404 25 VVLRFGK-YSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENI-VDVEFAVQYRISDPY 102 (266)
T ss_pred EeEEcCc-cccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCE-EEEEEEEEEEECCHH
Confidence 3457885 66899999999888888776545442 222233456899999988 7788 3333 444
Q ss_pred hhhhHHH--------HhHHHHHHHcccCcHhHHHhh-HHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeccCcHHHHHHH
Q 024967 68 HAIYDLL--------VNCSVIRASIPKLNLDDAFEQ-KNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAM 136 (260)
Q Consensus 68 ~a~y~v~--------~~~~alR~vi~~~~l~ei~~~-R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~~i~~ai 136 (260)
+++|++. .+.+++|+++|++++++++++ |++|.+.+++.+++.++.| ||+|.+|.|+++.||+++.++|
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~ 182 (266)
T cd03404 103 DYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAF 182 (266)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHH
Confidence 5566544 678999999999999999996 9999999999999999977 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHH
Q 024967 137 NEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQ 216 (260)
Q Consensus 137 ~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~ 216 (260)
++++.|+|++++.+.+|++++++.+.+|+|+|++.++.|+|++++..++|+|+++++..+++++.. +| +.+.++.
T Consensus 183 ~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~--~~---~~~~~~~ 257 (266)
T cd03404 183 DDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK--AP---DVTRERL 257 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--Ch---HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999963 44 4567778
Q ss_pred HHHHHHHHh
Q 024967 217 YFDTMKEIG 225 (260)
Q Consensus 217 ~l~~l~~~~ 225 (260)
|+++|++++
T Consensus 258 ~~~~~~~~~ 266 (266)
T cd03404 258 YLETMEEVL 266 (266)
T ss_pred HHHHHHHhC
Confidence 999999864
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.97 E-value=3.8e-29 Score=213.77 Aligned_cols=195 Identities=23% Similarity=0.294 Sum_probs=154.8
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH-----
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL----- 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~----- 74 (260)
|.-||| .+.+.++||+||++||++++...+|++.+.++++++.+.|+|++. +.+| .+.+ +|.++++.+.
T Consensus 8 Vv~~~G-~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~-v~v~~~v~yrI~d~~~~~~~~~~~~~~ 85 (215)
T cd03403 8 VVERLG-KYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVT-VRVDAVLYYRVVDPVKAVYGVEDYRYA 85 (215)
T ss_pred EEEEcC-cCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCE-EEEEEEEEEEEecHHHHHhcCCCHHHH
Confidence 445888 577789999999888899883349999999999999999999998 7778 3333 4555555443
Q ss_pred ---HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHHH
Q 024967 75 ---VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANE 151 (260)
Q Consensus 75 ---~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~ 151 (260)
.+.+++|++++++++++++++|+.|.+.+++.+++.+.+|||+|.++.|+++++|+++.++|++++.|++++++.+.
T Consensus 86 l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~ 165 (215)
T cd03403 86 ISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKII 165 (215)
T ss_pred HHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999988777666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccCCCc
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSS 231 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 231 (260)
+|||++++.+++|+|+++... + ...+.++++++++.++++++.+
T Consensus 166 ~A~ge~~a~~~~aea~~~~~~--------------------------------~----~~~~~~~~~e~~~~~~~~~~~~ 209 (215)
T cd03403 166 EAEGERQAAILLAEAAKQAAI--------------------------------N----PAALQLRELETLEEIAKEAAST 209 (215)
T ss_pred HhHHHHHHHHHHHHHHHHHcc--------------------------------C----HHHHHHHHHHHHHHHHhccCCe
Confidence 666555555444443332211 1 1345568999999999876655
Q ss_pred EEEEc
Q 024967 232 AVFIP 236 (260)
Q Consensus 232 ~v~lp 236 (260)
+++.|
T Consensus 210 ~~~~~ 214 (215)
T cd03403 210 VVFPA 214 (215)
T ss_pred EEeeC
Confidence 54444
No 11
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.96 E-value=1.2e-29 Score=217.37 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=162.7
Q ss_pred ecccccceee-ceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecchhhhH---HH----
Q 024967 4 VKPRLRTMYL-SMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHSHAIYD---LL---- 74 (260)
Q Consensus 4 v~~r~~~~~~-~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~~a~y~---v~---- 74 (260)
|-.|||-... +..+||+.|+.||||.+.+ +|+|+++|++|||+++|||.+. +.+| ++++++.+.... +.
T Consensus 65 VIfRLGRl~~~~~rGPGi~fvlPCIDt~~k-VDLRt~sfnVPpqeIltkDsvt-vsVdAvVyyri~dpi~sv~~V~Da~~ 142 (288)
T KOG2621|consen 65 VIFRLGRLRTGGARGPGLFFLLPCIDTFRK-VDLRTQSFNVPPQEILTKDSVT-ISVDAVVYYRISDPIIAVNNVGDADN 142 (288)
T ss_pred hheeeeeccccCCCCCCeEEEecccceeee-eeeeEEeecCCHHHHhcccceE-EEeceEEEEEecCHHHHHHhccCHHH
Confidence 5578886534 4779999999999999998 9999999999999999999998 8899 666655554433 33
Q ss_pred ----HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHH
Q 024967 75 ----VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAAN 150 (260)
Q Consensus 75 ----~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~ 150 (260)
+.++.||+++|+.++.|+++.|+.|...++..|++....|||+|++|+|+||.+|.+.+.+|.....|.|+++|++
T Consensus 143 sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akv 222 (288)
T KOG2621|consen 143 ATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKV 222 (288)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhH
Confidence 7899999999999999999999999999999999999999999999999999999999999998888888888877
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccCCC
Q 024967 151 EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKS 230 (260)
Q Consensus 151 ~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 230 (260)
+.||||+.+- ++.+++...+++ ++. .+..+||++|..++ +..+
T Consensus 223 iaaege~~as--------------------------~al~~aa~v~~~------sp~----alqLryLqtl~sia-~e~~ 265 (288)
T KOG2621|consen 223 IAAEGEKKAS--------------------------EALKEAADVISE------SPI----ALQLRYLQTLNSIA-AEKN 265 (288)
T ss_pred HHHHhhhHHH--------------------------HHHHHhhccccC------Cch----hhhhhhhhcchhhh-cCCC
Confidence 7777766542 122222222221 333 34568999999998 5888
Q ss_pred cEEEEcCCCCchhh
Q 024967 231 SAVFIPHGPGAVRD 244 (260)
Q Consensus 231 ~~v~lp~~~~~~~~ 244 (260)
+++++|.+.+-+..
T Consensus 266 ~tivfP~p~e~l~~ 279 (288)
T KOG2621|consen 266 STIVFPLPIDLLTA 279 (288)
T ss_pred CCcccCCCHHHHHH
Confidence 89999965544333
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.94 E-value=1.4e-25 Score=198.11 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=144.8
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEE---eecch---hh--hHHH
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICL---VHHSH---AI--YDLL 74 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~---~~~~~---a~--y~v~ 74 (260)
|.-|||+..+.+++|||||.+||++++.. ++++.+..+.++..+.|+|++. +++| +.. ++|.+ ++ |+++
T Consensus 15 VV~RfGkv~~~~l~PGLHfkiPfId~V~~-v~vrlq~~~~~~~~v~TkDg~~-ItvD~i~v~~ivdp~~~~~~~~~y~~~ 92 (280)
T cd03406 15 VYYRGGALLTSTSGPGFHLMLPFITTYKS-VQVTLQTDEVKNVPCGTSGGVM-IYFDRIEVVNFLIPDSVYDIVKNYTAD 92 (280)
T ss_pred EEEECCcccccccCCceEEecCCceEEEE-EEeEEEEeccCCcccccCCCcE-EEEEEEEEEEecCHHHHHHHHHHHhHh
Confidence 44589876678999999998888999876 8999998888888889999987 6888 433 34443 23 4443
Q ss_pred --------HhHHHHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeccCcHHHHHHHHHHHHHH
Q 024967 75 --------VNCSVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAMNEINAAA 143 (260)
Q Consensus 75 --------~~~~alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae 143 (260)
.+.+++|.++|+++++++++ +|++|...+++.+++.++.| ||+|.+|.|++++||++++++| ++|.||
T Consensus 93 ~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aE 171 (280)
T cd03406 93 YDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAE 171 (280)
T ss_pred hHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHH
Confidence 45678999999999999998 89999999999999999988 9999999999999999999997 799999
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 024967 144 RLRV--------AANEKAEAEKILQIKRAEGEAESKYLSG 175 (260)
Q Consensus 144 ~~~~--------a~~~~Ae~~~~a~i~~Aegeae~~~~~A 175 (260)
|++. +...+||++|.+.+++|||+++-..+.-
T Consensus 172 R~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~ 211 (280)
T cd03406 172 KTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILF 211 (280)
T ss_pred HHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHH
Confidence 9999 9999999999999999999998765543
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.94 E-value=1.8e-25 Score=188.46 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=128.7
Q ss_pred ecccccceeec-eecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEeee-EEeec--chh--hhH-H--H
Q 024967 4 VKPRLRTMYLS-MLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDI-CLVHH--SHA--IYD-L--L 74 (260)
Q Consensus 4 v~~r~~~~~~~-~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD~-~~~~~--~~a--~y~-v--~ 74 (260)
|.-|||+.... +++||+||++||++++.. +|++.+.++++. ...|+|++. +.+|. +.+.+ .++ +|. . +
T Consensus 12 Vv~~~g~~~~~~~~~pG~h~~~P~~~~v~~-~~~r~~~~~~~~-~~~t~d~~~-V~v~~~v~y~v~~~~~~~~~~~~~~~ 88 (196)
T cd03401 12 VLFNRGGGVKDLVYGEGLHFRIPWFQKPII-FDVRARPRNIES-TTGSKDLQM-VNITLRVLFRPDASQLPRIYQNLGED 88 (196)
T ss_pred EEEEecCccccCccCCceEEEccccceeEE-EEeeeeEEEEee-cccCCCCeE-EEEEEEEEEEeCHHHHHHHHHHhCcc
Confidence 34466765554 899999999899999877 999999888753 567999987 77883 33432 222 222 1 1
Q ss_pred --------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHH
Q 024967 75 --------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 146 (260)
Q Consensus 75 --------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~ 146 (260)
.+.+++|+++|++++++++++|++|...+.+.+.+.+++|||.|+++.|++|++|++++++|++++.|+|++
T Consensus 89 ~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~ 168 (196)
T cd03401 89 YDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEA 168 (196)
T ss_pred hHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHH
Q 024967 147 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIAR 180 (260)
Q Consensus 147 ~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~ 180 (260)
+++ +..+.+|+++|++.+++|+|+|+
T Consensus 169 ~~a--------~~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 169 ERA--------KFVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHhhhhhh
Confidence 642 12344455555555555555443
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.91 E-value=1e-23 Score=180.74 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=128.3
Q ss_pred ecccccceeece-ecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH----
Q 024967 4 VKPRLRTMYLSM-LLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL---- 74 (260)
Q Consensus 4 v~~r~~~~~~~~-~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~---- 74 (260)
|.-||| +|.+. .+|||||.+||++. . .+|+|.+.++.+++.+.|+|+.. +.+| ++.| ||.+++|++.
T Consensus 12 Vv~rfG-k~~~t~~~pGL~~~~P~~~~-~-~vd~R~~~~~~~~~~v~T~D~~~-v~V~~~V~~rV~Dp~ka~~~v~~~~~ 87 (219)
T cd03402 12 VLVLFG-RYIGTIRRTGLRWVNPFSSK-K-RVSLRVRNFESEKLKVNDANGNP-IEIAAVIVWRVVDTAKAVFNVDDYEE 87 (219)
T ss_pred EEEEcC-cCcccccCCceEEEeccceE-E-EEeeEEEEecCCCceeEcCCCCE-EEEEEEEEEEEcCHHHHHHHcCCHHH
Confidence 344788 46665 59999998888875 3 49999999999999999999998 7888 4444 5667778766
Q ss_pred ----HhHHHHHHHcccCcHhHHHh-------hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHH
Q 024967 75 ----VNCSVIRASIPKLNLDDAFE-------QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 143 (260)
Q Consensus 75 ----~~~~alR~vi~~~~l~ei~~-------~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae 143 (260)
.+.+++|+++|+++++++++ +|++|+..+++.+++.++.|||+|.++.|+++.+|+++.++|.++|.|+
T Consensus 88 ~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae 167 (219)
T cd03402 88 FVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQAS 167 (219)
T ss_pred HHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHH
Confidence 56799999999999999986 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 024967 144 RLRVAANEKAEA 155 (260)
Q Consensus 144 ~~~~a~~~~Ae~ 155 (260)
+...|+...++|
T Consensus 168 ~~~~Ar~~~~~G 179 (219)
T cd03402 168 AIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHhcc
Confidence 998887766665
No 15
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-18 Score=143.45 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=149.2
Q ss_pred eecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecchh----hhH-HH--
Q 024967 3 VVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHSHA----IYD-LL-- 74 (260)
Q Consensus 3 ~v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~~a----~y~-v~-- 74 (260)
.+..|++|....+...|+||.+|++++... +|+|.+...+.+. .-|+|-+. +.+. -+..+|..- .|+ ++
T Consensus 48 I~fnRi~Gik~~iy~EGtHf~iPwfe~pIi-YDvRarP~~i~S~-tGskDLQm-VnI~lRVLsRP~~~~Lp~iyrtLG~~ 124 (290)
T KOG3090|consen 48 IVFNRIGGIKDDIYPEGTHFRIPWFERPII-YDVRARPRLISSP-TGSKDLQM-VNIGLRVLSRPMADQLPEIYRTLGQN 124 (290)
T ss_pred EEEeccccchhccccCCceEeeecccccee-eeeccCcccccCC-CCCcceeE-EEeeeEEecCCChhhhHHHHHHhccC
Confidence 356899999999999999995555666665 6888877776442 34677664 5555 455556521 332 22
Q ss_pred --------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHH
Q 024967 75 --------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 146 (260)
Q Consensus 75 --------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~ 146 (260)
.+.+.|++++++++..++++.|+.++..+++.+-+...++.|.+++|.|..+++++++..+++.+..|+|++
T Consensus 125 y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeA 204 (290)
T KOG3090|consen 125 YDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEA 204 (290)
T ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH---HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHH
Q 024967 147 VAAN---EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKE 223 (260)
Q Consensus 147 ~a~~---~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~ 223 (260)
+.+. .+|+.+++..+.+|+||+++ ++.+.+|+++ ++. ++.++-+++-++
T Consensus 205 qRA~F~VekA~qek~~~ivrAqGEaks----------------------AqliGeAi~n--n~~----fi~Lrki~aAr~ 256 (290)
T KOG3090|consen 205 QRAKFIVEKAEQEKQSAIVRAQGEAKS----------------------AQLIGEAIKN--NPA----FITLRKIEAARE 256 (290)
T ss_pred hhhhhhhHHHHHhhhhhhhhhccchHH----------------------HHHHHHHHhC--Ccc----ceeehhHHHHHH
Confidence 7543 24444554444444443333 3334444432 332 344567777776
Q ss_pred Hhc--cCCCcEEEEcCCC
Q 024967 224 IGA--ASKSSAVFIPHGP 239 (260)
Q Consensus 224 ~~~--~~~~~~v~lp~~~ 239 (260)
+++ +.+.|.++|+.+.
T Consensus 257 IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 257 IAQTIASSANKVYLSSDD 274 (290)
T ss_pred HHHHHhcCCCeEEecccc
Confidence 665 3556678998654
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.78 E-value=1.4e-18 Score=143.35 Aligned_cols=148 Identities=25% Similarity=0.343 Sum_probs=99.8
Q ss_pred ccccceeeceecccceeecceeEEEEEEeeccceecccCC--ceeeEeeeEEEEEeee-EEeecc---hhhhHH----H-
Q 024967 6 PRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRP--MSLMVKYIYLFKTIDI-CLVHHS---HAIYDL----L- 74 (260)
Q Consensus 6 ~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~--~~v~tkd~v~~~~vD~-~~~~~~---~a~y~v----~- 74 (260)
-++|+ ...+++||+||..|+.+++.. ++++.+.+++.. ..+.|+|++. +.+|. +.+.+. .++... .
T Consensus 12 ~~~G~-~~~~~~~G~~~~~P~~~~~~~-~~~~~~~~~~~~~~~~~~t~D~~~-v~v~~~v~y~i~~~~~~~~~~~~~~~~ 88 (179)
T PF01145_consen 12 VRFGK-VKDVLGPGLHFVIPFIQKVYV-YPTRVQTIEFTREPITVRTKDGVP-VDVDVTVTYRIEDPPKFVQNYEGGEED 88 (179)
T ss_dssp ---------------------EEE--S---SS-EEEEEEE--EEEE-TTS-E-EEEEEEEEEEES-CCCCCCCCSS-HCH
T ss_pred EECCe-EeEEECCCeEEEeCCcCeEEE-EeCEEEecccchhhhhhhhcccce-eeeeEEEEEEechHHHHHHhhhcchhh
Confidence 34664 555899999997777888875 999999999987 9999999998 66773 334442 222222 1
Q ss_pred -------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHH-
Q 024967 75 -------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR- 146 (260)
Q Consensus 75 -------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~- 146 (260)
.+.+++|++++++++++++++|.++.+.+++.+++.+.+|||+|.++.|.++.+|+++.+++.++..|++++
T Consensus 89 ~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~ 168 (179)
T PF01145_consen 89 PENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQ 168 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-
T ss_pred hhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHH
Q 024967 147 VAANEKAEAE 156 (260)
Q Consensus 147 ~a~~~~Ae~~ 156 (260)
++++.+||+|
T Consensus 169 ~~~~~~a~~e 178 (179)
T PF01145_consen 169 QAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 5555555443
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.77 E-value=7.5e-18 Score=136.67 Aligned_cols=132 Identities=23% Similarity=0.333 Sum_probs=111.4
Q ss_pred cccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH------
Q 024967 5 KPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL------ 74 (260)
Q Consensus 5 ~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~------ 74 (260)
..++| .+.+++.||+||+.|+++++.. ++++.+.++.+...+.|+|++. +.+| .+.+ ++..+++++.
T Consensus 14 ~~~~G-~~~~~~~pG~~~~~P~~~~~~~-~~~~~~~~~~~~~~~~t~d~~~-v~v~~~v~~rv~d~~~~~~~~~~~~~~~ 90 (160)
T smart00244 14 VERLG-RVLRVLGPGLHFLIPFIDRVKK-VDLRAQTDDVPPQEIITKDNVK-VSVDAVVYYRVLDPLKAVYRVLDADYAV 90 (160)
T ss_pred EEecC-ccccccCCCEEEEecceeEEEE-EeeEEEeecCCceEEEecCCcE-EEEeEEEEEEEccHHHHhhhcCCHHHHH
Confidence 44666 4556899999998778888876 9999999999888999999988 7777 3333 3444333222
Q ss_pred ---HhHHHHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHH
Q 024967 75 ---VNCSVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEI 139 (260)
Q Consensus 75 ---~~~~alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~ 139 (260)
.+.+++|+++++++++++++ +|+++.+.+++.+++.+++||+++.++.|+++.+|++++++++++
T Consensus 91 l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 91 IEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred HHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 56789999999999999999 799999999999999999999999999999999999999999865
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.6e-17 Score=134.84 Aligned_cols=171 Identities=13% Similarity=0.180 Sum_probs=128.3
Q ss_pred eecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEeee-EEeecc-----hhhhHHH--
Q 024967 3 VVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDI-CLVHHS-----HAIYDLL-- 74 (260)
Q Consensus 3 ~v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD~-~~~~~~-----~a~y~v~-- 74 (260)
|..+||.+....+.+.|-||++|++.+... +|.|.+..+++. ..-|+|-+. +.+.. ....|. ..|-.+.
T Consensus 37 vifdrf~gv~~~vvgegthflipw~qk~~i-~d~rs~p~~v~~-itGskdLQ~-VniTlril~rp~~sqLP~If~~~G~d 113 (271)
T KOG3083|consen 37 VIFDRFRGVQDQVVGEGTHFLIPWVQKPII-FDCRSRPRNVPV-ITGSKDLQN-VNITLRILFRPVVSQLPCIFTSIGED 113 (271)
T ss_pred EEeecccchhhhcccCCceeeeeeccCcEE-EeccCCCccccc-ccCchhhhc-ccceEEEEecccccccchHHHhhccc
Confidence 457899999999999999996666776665 788887776655 344777544 33331 122222 1122232
Q ss_pred --------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHH
Q 024967 75 --------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 146 (260)
Q Consensus 75 --------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~ 146 (260)
..-+.|++++++++..|+++.|+.++..+.+++-+....+|+.+++|.|...++..+..++++.+..|+|++
T Consensus 114 yDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEA 193 (271)
T KOG3083|consen 114 YDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEA 193 (271)
T ss_pred ccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH---HHHHHHHHHHHHHHhhHHHHHHhhch
Q 024967 147 VAAN---EKAEAEKILQIKRAEGEAESKYLSGL 176 (260)
Q Consensus 147 ~a~~---~~Ae~~~~a~i~~Aegeae~~~~~Ae 176 (260)
+... .+||.+|.+.+++||||+++..+.+.
T Consensus 194 ErarFvVeKAeQqk~aavIsAEGds~aA~li~~ 226 (271)
T KOG3083|consen 194 ERARFVVEKAEQQKKAAVISAEGDSKAAELIAN 226 (271)
T ss_pred HHHHHHHHHHhhhhhhheeecccchHHHHHHHH
Confidence 7543 35566666655555555555444443
No 19
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.63 E-value=7.9e-14 Score=123.25 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=98.8
Q ss_pred eecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEeeeEEeecc--h---h-hhHHH--------------
Q 024967 15 MLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHS--H---A-IYDLL-------------- 74 (260)
Q Consensus 15 ~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD~~~~~~~--~---a-~y~v~-------------- 74 (260)
.+.||--.+|| +++. ++|+.+.++++..+.+.|..++.|.+..+..+.|. + . .|-..
T Consensus 22 ~lv~~~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~flgK~~~eIn~~v 98 (428)
T KOG2668|consen 22 KLVKKSWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLLYACEQFLGKSSNEINELV 98 (428)
T ss_pred eecccceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34555444566 5555 49999999999999999999999554445443332 2 1 11111
Q ss_pred --HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcH--HHHHHHHHHHHHHHHH
Q 024967 75 --VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDE--HVKRAMNEINAAARLR 146 (260)
Q Consensus 75 --~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~--~i~~ai~~~~~Ae~~~ 146 (260)
.+.++.|.++++||+++++.+|.+|...+.+.....+..+||.|.+..|+|+...+ +|..++.+.-+|+..+
T Consensus 99 l~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~r 174 (428)
T KOG2668|consen 99 LGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVAR 174 (428)
T ss_pred HHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999998766 6877776666655443
No 20
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.53 E-value=4.1e-14 Score=111.45 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=88.0
Q ss_pred eeccceecccCCceeeEeeeEEEEEee-eEEeecc---hhhhHH---------H--------HhHHHHHHHcccCcHhHH
Q 024967 34 INSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS---HAIYDL---------L--------VNCSVIRASIPKLNLDDA 92 (260)
Q Consensus 34 vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~---~a~y~v---------~--------~~~~alR~vi~~~~l~ei 92 (260)
+|+|.+.++++++.++|+|++. +.+| .+.|.+. +++..+ . .+++++|+++|+|+++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~-v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el 80 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVR-VDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEI 80 (128)
T ss_pred ccccceeeeccccceecCCCcE-EEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 6889999999999999999999 7788 4444443 222111 1 457899999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHH
Q 024967 93 FEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMN 137 (260)
Q Consensus 93 ~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~ 137 (260)
+++|++|...+.+.+++.+++||++|.++.|++|.+|+++.+++.
T Consensus 81 ~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 81 YEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 999999999999999999999999999999999999999887764
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.46 E-value=7.8e-13 Score=103.54 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=86.2
Q ss_pred eeccceecccCCceeeEeeeEEEEEee-eEEe--ecchhhh---HH-----H-----HhHHHHHHHcccCcHhHHHh-hH
Q 024967 34 INSATQGLKFRPMSLMVKYIYLFKTID-ICLV--HHSHAIY---DL-----L-----VNCSVIRASIPKLNLDDAFE-QK 96 (260)
Q Consensus 34 vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~--~~~~a~y---~v-----~-----~~~~alR~vi~~~~l~ei~~-~R 96 (260)
+++|.+..+ .+..+.|+|+.. +.+| .+.| ++.++++ .. . .+.+++|+++|+++++++++ +|
T Consensus 3 ~~~r~~~~~-~~~~v~T~D~~~-v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R 80 (124)
T cd03400 3 YSTRLQEVD-EKIDVLSKEGLS-INADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKR 80 (124)
T ss_pred ccceeeecc-cceEEECCCCCE-EEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhH
Confidence 466777665 467899999998 7788 3434 3334432 11 1 57789999999999999997 79
Q ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHH
Q 024967 97 NEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEI 139 (260)
Q Consensus 97 ~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~ 139 (260)
++|.+.+++.+++.+.+||+.|.++.|+++.||+++++|++++
T Consensus 81 ~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 81 KEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999875
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=6.5e-12 Score=118.53 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=130.8
Q ss_pred ceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecc-------hh---hhHH-H---
Q 024967 10 TMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS-------HA---IYDL-L--- 74 (260)
Q Consensus 10 ~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~-------~a---~y~v-~--- 74 (260)
+....++.||+||+.|++....+ +++++..+++..-.+.|+|+++ +.++ ..++.+. ++ |..- +
T Consensus 58 g~~~~vV~gGg~~v~Pi~q~~~r-~~l~~i~l~v~~~~v~t~Dg~p-~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~ 135 (548)
T COG2268 58 GGGQKVVRGGGAIVMPIFQTIER-MSLTTIKLEVEIDNVYTKDGMP-LNVEAVAYVKIGDTFQDIATAAERFGGKGSRED 135 (548)
T ss_pred cCCccEEecCceEEecceeeeEE-eeeeeeeeeeeeeeeEecCCCc-cceeEEEEEEecCCHHHHHHHHHHhccccCHHH
Confidence 45566889999998888877776 9999999999877899999998 4456 2333222 11 1111 0
Q ss_pred -------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCc-------HHHHHHHHHHH
Q 024967 75 -------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPD-------EHVKRAMNEIN 140 (260)
Q Consensus 75 -------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p-------~~i~~ai~~~~ 140 (260)
...+++|.+++++|+.+++.+|..|...+.+.+...+++.|+.++++.|.|+..+ ..+.++...+.
T Consensus 136 l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~ 215 (548)
T COG2268 136 LEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRR 215 (548)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHH
Confidence 4568999999999999999999999999999999999999999999999999988 89999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 024967 141 AAARLRVAANEKAEAEKILQIKRAEGEAESKYL 173 (260)
Q Consensus 141 ~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~ 173 (260)
.++-.+++.+..+|.+++..+..++++.++...
T Consensus 216 i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~ 248 (548)
T COG2268 216 IAQVLQDAEIAENEAEKETEIAIAEANRDAKLV 248 (548)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHH
Confidence 888888888888888888777777666655433
No 23
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.33 E-value=7.7e-10 Score=93.34 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=105.5
Q ss_pred ecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEE---eecchhhhHH------
Q 024967 4 VKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICL---VHHSHAIYDL------ 73 (260)
Q Consensus 4 v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~---~~~~~a~y~v------ 73 (260)
|+-|=|-....+-+||+|...||+..+.. +-+..++-++....|-|++++. +..| +-. ..| ++.|.+
T Consensus 33 vYyRGGALL~~~t~PG~Hl~lPFiTt~ks-VQvTLQTDev~nvPCGTsGGVl-IyfdrIEVVN~L~~-d~Vydiv~NYtv 109 (322)
T KOG2962|consen 33 VYYRGGALLTSITGPGFHLMLPFITTYKS-VQVTLQTDEVKNVPCGTSGGVL-IYFDRIEVVNFLRP-DAVYDIVKNYTV 109 (322)
T ss_pred EEEecceeeeccCCCCcEEEeeeeeceee-eEEEeeccccccCCCCCCCcEE-EEEehhhhhhhhch-hHHHHHHHHccc
Confidence 55666777788899999999999998876 7777777788888899999986 6677 211 222 233332
Q ss_pred H----HhHH----HHHHHcccCcHhHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeccCcHHHHHHHHHHHHH
Q 024967 74 L----VNCS----VIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAMNEINAA 142 (260)
Q Consensus 74 ~----~~~~----alR~vi~~~~l~ei~~-~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~~i~~ai~~~~~A 142 (260)
+ ++++ .+...++..++.+++- --++|.+.++..|++.+..+ |+.|..|.+.....|+.++..++ .|.+
T Consensus 110 dYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~ME~ 188 (322)
T KOG2962|consen 110 DYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LMEA 188 (322)
T ss_pred CCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HHHH
Confidence 2 4443 4666678889999885 67899999999999999887 99999999999999999998863 4555
Q ss_pred HH
Q 024967 143 AR 144 (260)
Q Consensus 143 e~ 144 (260)
|+
T Consensus 189 Ek 190 (322)
T KOG2962|consen 189 EK 190 (322)
T ss_pred Hh
Confidence 54
No 24
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.27 E-value=3.9e-11 Score=101.68 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=95.9
Q ss_pred cccccceeeceeccccee-e---cceeEE--------------EEEEeeccceeccc--CCc----eeeEeeeEEEEEee
Q 024967 5 KPRLRTMYLSMLLHLFNT-V---PWHIRQ--------------MMLSINSATQGLKF--RPM----SLMVKYIYLFKTID 60 (260)
Q Consensus 5 ~~r~~~~~~~~~~PGl~~-~---~~~i~~--------------~~~~vd~r~~~~~~--~~~----~v~tkd~v~~~~vD 60 (260)
--|+| ++.+++.||.|+ + .|++.. ...+++++...... .+. ...|+|++. +.+|
T Consensus 27 ~~~~G-k~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~v~ 104 (207)
T cd03408 27 FVNEG-KVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDSEFGGVP-LRAF 104 (207)
T ss_pred EEECC-EEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCCccceEE-EEee
Confidence 34666 577778888876 4 233322 12236776665432 222 344666676 5566
Q ss_pred -eEEe---ecchhhhHH---------H--------HhHHHHHHHcccCcHhHHHhh--HHHHHHHHHHHHHHHhhhcCeE
Q 024967 61 -ICLV---HHSHAIYDL---------L--------VNCSVIRASIPKLNLDDAFEQ--KNEIAKAVEEELEKAMSAYGYE 117 (260)
Q Consensus 61 -~~~~---~~~~a~y~v---------~--------~~~~alR~vi~~~~l~ei~~~--R~~i~~~i~~~l~~~~~~~Gi~ 117 (260)
.+.+ ||.+++.++ . .+.+++|++++++++++++.. |++|++.+++.+++.+.+||++
T Consensus 105 ~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~ 184 (207)
T cd03408 105 GTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLE 184 (207)
T ss_pred EEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcE
Confidence 3333 454443222 1 677999999999999999987 9999999999999999999999
Q ss_pred EEEEEeeeccCcHHHHHHHHHH
Q 024967 118 IVQTLIVDIEPDEHVKRAMNEI 139 (260)
Q Consensus 118 v~~v~I~~i~~p~~i~~ai~~~ 139 (260)
|.++.|+++.+|++++++|.++
T Consensus 185 i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 185 LVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred EEEEEEEeecCCHHHHHHHHhh
Confidence 9999999999999999998764
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.07 E-value=2.3e-09 Score=82.03 Aligned_cols=103 Identities=31% Similarity=0.490 Sum_probs=84.1
Q ss_pred ccceecccCCceeeEeeeEEEEEee-eEEeecc--h-hhhHHH----------HhHHHHHHHcccCcHhHHHhhHHHHHH
Q 024967 36 SATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS--H-AIYDLL----------VNCSVIRASIPKLNLDDAFEQKNEIAK 101 (260)
Q Consensus 36 ~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~--~-a~y~v~----------~~~~alR~vi~~~~l~ei~~~R~~i~~ 101 (260)
.+....+.++..+.|+|++. +.++ .+.+.+. . .+|... .+.+++|++++.++++++.++|.+|.+
T Consensus 4 ~~~~~~~~~~~~~~t~d~~~-i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 82 (121)
T cd02106 4 LRRQTLDVPPQEVLTKDNVP-VRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAA 82 (121)
T ss_pred ceeEEecCCCceEEecCCCE-EEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHH
Confidence 34455677888899999988 6666 3333322 2 333321 567899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHH
Q 024967 102 AVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEI 139 (260)
Q Consensus 102 ~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~ 139 (260)
.+++.+...+++||++|.++.|.++.+|+++.++++++
T Consensus 83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 83 EVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999998875
No 26
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=98.18 E-value=7e-07 Score=76.97 Aligned_cols=212 Identities=19% Similarity=0.207 Sum_probs=124.1
Q ss_pred cceeEEEEEEeeccceeccc-CCceeeEee------------eEEEEEeeeEEeecchh-hhHHH--Hh------HHHHH
Q 024967 24 PWHIRQMMLSINSATQGLKF-RPMSLMVKY------------IYLFKTIDICLVHHSHA-IYDLL--VN------CSVIR 81 (260)
Q Consensus 24 ~~~i~~~~~~vd~r~~~~~~-~~~~v~tkd------------~v~~~~vD~~~~~~~~a-~y~v~--~~------~~alR 81 (260)
.|++++++++..+.+++++| +|....... +...++.|++++.++-+ +|++- +. .+.-+
T Consensus 17 a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp~ 96 (301)
T KOG2620|consen 17 AAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENPE 96 (301)
T ss_pred hHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCHH
Confidence 47789999999999999998 553321111 22347788888777744 55543 22 22222
Q ss_pred HHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHH------------------H
Q 024967 82 ASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA------------------A 143 (260)
Q Consensus 82 ~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A------------------e 143 (260)
..|..+-.+ .-|+++..- .|++.++..+ ++...+.++++..+.+ -
T Consensus 97 ~aI~qlaqt---tmRsevgkl---tLD~vFeer~-----------~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 97 YAIQQLAQT---TMRSEVGKL---TLDKVFEERN-----------SLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred HHHHHHHHH---HHHHhcccc---cHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 222222221 145555543 2344444332 1233445555555543 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHh----hhCCC--Cchhh-----hhHH-
Q 024967 144 RLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFS----INVPG--TTAKD-----VMDM- 211 (260)
Q Consensus 144 ~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~----~a~~~--~~~~~-----~~~~- 211 (260)
+++...+.+||+.+++.+.++||++++.+..|||++++..+-++|.+..-..++ ++.-. ...+. ++++
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 233457889999999999999999999999999999999999998874332222 22211 01111 1111
Q ss_pred ----HHHHHHHHHHHHHhccCCCcEEEEcCC----CCchhhHHHHHHHHHHh
Q 024967 212 ----VLVTQYFDTMKEIGAASKSSAVFIPHG----PGAVRDVATQIRDGLLQ 255 (260)
Q Consensus 212 ----~~~~~~l~~l~~~~~~~~~~~v~lp~~----~~~~~~~~~~~~~~~~~ 255 (260)
..+..|..+.+.++.++ ++ ---.. |.|.+++.+.+.|++.-
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~--~l-ak~sntv~lP~~pg~v~~mvaQa~~~ 288 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFG--KL-AKKSNTVFLPHGPGDVRDMVAQALNG 288 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhh--hh-cccCceEEecCCCCcHHHHHHHHHHH
Confidence 12356778888886432 21 11111 46778999999988764
No 27
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.05 E-value=2e-05 Score=69.48 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhC
Q 024967 148 AANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINV 200 (260)
Q Consensus 148 a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~ 200 (260)
.....|+.++++.+.+|||++.+.+..|+|++++.+++|+|+|++...++++.
T Consensus 150 ~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~ 202 (262)
T cd03407 150 NEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL 202 (262)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999988865
No 28
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=97.52 E-value=0.0017 Score=55.49 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=50.7
Q ss_pred cCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHH
Q 024967 86 KLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEIN 140 (260)
Q Consensus 86 ~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~ 140 (260)
++++.++-++-.+|++.+++.++..++.||+++.++.|.+|++|+++++.+.++.
T Consensus 153 ~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 153 KISILDIPAHLDEISEALKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 5788888889999999999999999999999999999999999999999987754
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.40 E-value=0.00061 Score=59.04 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhh
Q 024967 151 EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198 (260)
Q Consensus 151 ~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~ 198 (260)
..|+.++.+...+|+|++++.++.|+|++++.++.|+|++++....++
T Consensus 162 ~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ 209 (242)
T cd03405 162 MRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGE 209 (242)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666677777777777777777777777777777776665554
No 30
>PTZ00491 major vault protein; Provisional
Probab=97.15 E-value=0.0054 Score=61.39 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=51.9
Q ss_pred CceeeEeeeEEEEEeeeE---Ee-----ecc--hhhhHHH--------HhHHHHHHHcccCcHhHHHhhHHH-HHHHHHH
Q 024967 45 PMSLMVKYIYLFKTIDIC---LV-----HHS--HAIYDLL--------VNCSVIRASIPKLNLDDAFEQKNE-IAKAVEE 105 (260)
Q Consensus 45 ~~~v~tkd~v~~~~vD~~---~~-----~~~--~a~y~v~--------~~~~alR~vi~~~~l~ei~~~R~~-i~~~i~~ 105 (260)
-..+-|+|+.. +.+..+ .. |+. ...|.+. .+.+.+|..+++.++++...+-.. |...+..
T Consensus 531 ~i~vET~DhAr-L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg 609 (850)
T PTZ00491 531 VIHVETSDHAR-LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFG 609 (850)
T ss_pred EEEEEEcccce-EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhcc
Confidence 34577888876 334421 12 232 2244442 566889999999999998764333 2333322
Q ss_pred HHHH--------HhhhcCeEEEEEEeeeccCcH
Q 024967 106 ELEK--------AMSAYGYEIVQTLIVDIEPDE 130 (260)
Q Consensus 106 ~l~~--------~~~~~Gi~v~~v~I~~i~~p~ 130 (260)
..++ .+...|+.|.+|.|+++.|-+
T Consensus 610 ~~~e~~~~r~~l~F~~N~lvit~VDvqsvEpvD 642 (850)
T PTZ00491 610 SNDETGEVRDSLRFPANNLVITNVDVQSVEPVD 642 (850)
T ss_pred CcCCCCccccceEEccCCeEEEEEeeeeeeecC
Confidence 1111 235569999999999998754
No 31
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=97.12 E-value=0.007 Score=56.89 Aligned_cols=50 Identities=12% Similarity=0.004 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhh
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~ 198 (260)
....|+.++++.+.+|++.+..++.+|+|+|++++..|+|.+++....++
T Consensus 253 ~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~Ae 302 (419)
T PRK10930 253 DAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQ 302 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666777777777777777777777777777766665544443
No 32
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.93 E-value=0.0069 Score=53.30 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhh
Q 024967 150 NEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSIN 199 (260)
Q Consensus 150 ~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a 199 (260)
...|+.++++.+.+|++++++.+..|+|+|++.++.|+|++++....+++
T Consensus 185 ~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~ 234 (266)
T cd03404 185 VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQG 234 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667778888899999999999999999999999999999888777664
No 33
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=96.84 E-value=0.011 Score=51.97 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=75.1
Q ss_pred cceeEEEEEEeecccee-ccc-CCceeeEeeeEE-----EEEeee---EEeecch---------hhhHHH--------Hh
Q 024967 24 PWHIRQMMLSINSATQG-LKF-RPMSLMVKYIYL-----FKTIDI---CLVHHSH---------AIYDLL--------VN 76 (260)
Q Consensus 24 ~~~i~~~~~~vd~r~~~-~~~-~~~~v~tkd~v~-----~~~vD~---~~~~~~~---------a~y~v~--------~~ 76 (260)
+|+-..+ +++++++.. +.+ .++.+...|+.+ ++.... -+.||.. -.|.|+ ..
T Consensus 90 sp~k~eV-yfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~ 168 (345)
T COG4260 90 SPFKQEV-YFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEF 168 (345)
T ss_pred CcccceE-EEEecceecceecCCCCCeecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHH
Confidence 4433444 348888875 565 566666666532 222221 1133333 123332 23
Q ss_pred HHHHHHHcccCcH--hHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHH
Q 024967 77 CSVIRASIPKLNL--DDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINA 141 (260)
Q Consensus 77 ~~alR~vi~~~~l--~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~ 141 (260)
..+|-..|.++-. ..+-++--+|++.+.+.|++.+..+|..|+++.|-+|++|++.+..++.+..
T Consensus 169 m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~s 235 (345)
T COG4260 169 MGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRNS 235 (345)
T ss_pred HHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhcc
Confidence 3556666655432 2333466789999999999999999999999999999999999998887653
No 34
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.80 E-value=0.0061 Score=55.67 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhh
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSIN 199 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a 199 (260)
...+||.++.+...+|||++++.++.++|++++.++.|+|++++....+++
T Consensus 225 ~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aeg 275 (334)
T PRK11029 225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEG 275 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 345788889999999999999999999999999999999888777665553
No 35
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.73 E-value=0.0068 Score=55.00 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhh
Q 024967 150 NEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198 (260)
Q Consensus 150 ~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~ 198 (260)
...||.++.+...+++|++++..+.|+|++++.++.|+|++++....++
T Consensus 216 ~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Ae 264 (317)
T TIGR01932 216 RMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGE 264 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4467777788888899999999999999999888888888776655544
No 36
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.46 E-value=0.014 Score=51.18 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVD 187 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~ae 187 (260)
.+.+|++++++.+..|+|.+++.++.|+|+|++..+.++
T Consensus 179 ~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ 217 (261)
T TIGR01933 179 VVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLA 217 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334455555555555555555555555555555444433
No 37
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.042 Score=48.91 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhC
Q 024967 146 RVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINV 200 (260)
Q Consensus 146 ~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~ 200 (260)
+......||.++++.+.+|+|++++.++.|+|++++..+.++|.+++ +.++++-
T Consensus 178 a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~ 231 (291)
T COG0330 178 AMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAE 231 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhc
Confidence 44567789999999999999999999999999999999999999887 5555543
No 38
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.47 Score=45.87 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=47.3
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhc--------cCCCcEEEEc
Q 024967 165 EGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGA--------ASKSSAVFIP 236 (260)
Q Consensus 165 egeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~v~lp 236 (260)
+++++..+..+.++|++.+.+|+|++++.+.+++++...++.... .++..-+++|+.+++ -+..+++.+|
T Consensus 412 ~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a--~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i~ 489 (548)
T COG2268 412 KAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAA--ELFKALVQALPEVAEEAAQPMKNIDSEKVRVIG 489 (548)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHhhcccccccceeEEecC
Confidence 356777777778888888899999999999999987643333122 222345666666654 2344556666
Q ss_pred CCC
Q 024967 237 HGP 239 (260)
Q Consensus 237 ~~~ 239 (260)
...
T Consensus 490 ~~~ 492 (548)
T COG2268 490 GAN 492 (548)
T ss_pred Ccc
Confidence 543
No 39
>PRK13665 hypothetical protein; Provisional
Probab=90.99 E-value=2 Score=37.90 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=54.4
Q ss_pred eeccceecccCCceeeEeeeEEEEEeeeEE--eecchhhhHHH------Hh-HHHHHHHcccCcHhHHHhhHHHHHHHHH
Q 024967 34 INSATQGLKFRPMSLMVKYIYLFKTIDICL--VHHSHAIYDLL------VN-CSVIRASIPKLNLDDAFEQKNEIAKAVE 104 (260)
Q Consensus 34 vd~r~~~~~~~~~~v~tkd~v~~~~vD~~~--~~~~~a~y~v~------~~-~~alR~vi~~~~l~ei~~~R~~i~~~i~ 104 (260)
.+..+..++.|......+|++.++...-+- -+++...=+-. .+ .+-+..+=+.-+-.+++.+-+.|+..+
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaNi~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~V- 203 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRANIDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTV- 203 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEeehhHHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHH-
Confidence 345566777787777778877644322111 11221110000 11 112222223345567888888888765
Q ss_pred HHHHHHhhh-cCeEEEEEEeeeccCcHHHHH
Q 024967 105 EELEKAMSA-YGYEIVQTLIVDIEPDEHVKR 134 (260)
Q Consensus 105 ~~l~~~~~~-~Gi~v~~v~I~~i~~p~~i~~ 134 (260)
|.+-++. .-++|.++.|-|++..+++-.
T Consensus 204 --L~kGLDagTAFeIlSIDIADvdVG~NIGA 232 (316)
T PRK13665 204 --LSKGLDAGTAFEILSIDIADVDVGKNIGA 232 (316)
T ss_pred --HhccCCcCceeEEEEEeeeccccchhhch
Confidence 3443433 358999999999999887543
No 40
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=89.91 E-value=1.9 Score=38.14 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred eeccceecccCCceeeEeeeEEEEEeee--EEeecchh---------hhHHHHhHHHHHHHc-ccCcHhHHHhhHHHHHH
Q 024967 34 INSATQGLKFRPMSLMVKYIYLFKTIDI--CLVHHSHA---------IYDLLVNCSVIRASI-PKLNLDDAFEQKNEIAK 101 (260)
Q Consensus 34 vd~r~~~~~~~~~~v~tkd~v~~~~vD~--~~~~~~~a---------~y~v~~~~~alR~vi-~~~~l~ei~~~R~~i~~ 101 (260)
.+..+..++.|......+|++.++..-- +..+++.. .-++. +-+=+.+ +.-+-.+++.+-+.|++
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaNi~rLVGGAgEeTIiARVG---EgIVttiGSa~~hk~VLEnPd~ISk 196 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRANIDRLVGGAGEETIIARVG---EGIVTTIGSAESHKEVLENPDSISK 196 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEecHHHhccCCCcHHHHHHHc---cceeeeeccchhHHHHhcCHHHHHH
Confidence 3445566777777777788776433221 11222211 11111 1111222 23455677788888888
Q ss_pred HHHHHHHHHhh-hcCeEEEEEEeeeccCcHHHHH
Q 024967 102 AVEEELEKAMS-AYGYEIVQTLIVDIEPDEHVKR 134 (260)
Q Consensus 102 ~i~~~l~~~~~-~~Gi~v~~v~I~~i~~p~~i~~ 134 (260)
.+. .+-++ +.-++|.++.|-|++..+++-.
T Consensus 197 ~VL---~kgLDagTAFeIlSIDIaDidVG~NIGA 227 (316)
T PF12127_consen 197 TVL---EKGLDAGTAFEILSIDIADIDVGENIGA 227 (316)
T ss_pred HHH---hhCCCcCceeEEEEeeeeccccchhhch
Confidence 763 33332 2348999999999999887543
No 41
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=88.98 E-value=4.1 Score=34.31 Aligned_cols=46 Identities=20% Similarity=0.075 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhh
Q 024967 133 KRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGI 178 (260)
Q Consensus 133 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~ 178 (260)
.+.|......+.+.+|..+.+++++++..+.++|++++..+..+|+
T Consensus 9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe 54 (198)
T PRK01558 9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAE 54 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333333333333333
No 42
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=88.43 E-value=2 Score=36.25 Aligned_cols=38 Identities=24% Similarity=0.043 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhH
Q 024967 153 AEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLR 190 (260)
Q Consensus 153 Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a 190 (260)
|+.++...+..|+.+|+.++..|+.+|+.+..+|+.++
T Consensus 20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea 57 (198)
T PRK01558 20 AERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEA 57 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555554444444
No 43
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=88.24 E-value=4.1 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHH
Q 024967 135 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 181 (260)
Q Consensus 135 ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a 181 (260)
-|..-+.||+++..-+..|+.++...+.+|+.+|+..+..=+++.++
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ 53 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREK 53 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888888889999998888877764444444
No 44
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=86.88 E-value=1.2 Score=36.93 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=20.9
Q ss_pred HHHHHhhchhhHHHHHHHHHhhHHh
Q 024967 168 AESKYLSGLGIARQRQAIVDGLRDS 192 (260)
Q Consensus 168 ae~~~~~Aea~a~a~~~~aea~a~a 192 (260)
++..+..|+++|++.+++|+|+++|
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4446788999999999999999876
No 45
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=86.23 E-value=6.6 Score=32.56 Aligned_cols=44 Identities=20% Similarity=0.040 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhh
Q 024967 135 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGI 178 (260)
Q Consensus 135 ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~ 178 (260)
.+-..+.++..+++..+.+++++++..+.+++++++..+..++.
T Consensus 5 ~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~ 48 (188)
T PRK02292 5 TVVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDRE 48 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666655555555555544444433
No 46
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=85.82 E-value=13 Score=28.18 Aligned_cols=43 Identities=26% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhch
Q 024967 134 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGL 176 (260)
Q Consensus 134 ~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Ae 176 (260)
+.+...-.|+...+..+.+|+-++...+..|+.++...+..|+
T Consensus 7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE 49 (108)
T COG2811 7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAE 49 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665555555555555555544444
No 47
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.68 E-value=2.8 Score=38.27 Aligned_cols=82 Identities=22% Similarity=0.144 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhc-----
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGA----- 226 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~----- 226 (260)
-||+++...+..|++||+..+...+|+|.++.+.|.++++.....+.++..+.....++ --|++|+.++.
T Consensus 297 laEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~-----~lLealp~Ia~~ia~p 371 (428)
T KOG2668|consen 297 LAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLR-----TLLEALPMIAAEIAAP 371 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHhccc
Confidence 46777777888899999999999999998888888888888887777665432222222 35888888865
Q ss_pred -cCCCcEEEEcCC
Q 024967 227 -ASKSSAVFIPHG 238 (260)
Q Consensus 227 -~~~~~~v~lp~~ 238 (260)
+.-+++.++.++
T Consensus 372 laktnkI~v~s~g 384 (428)
T KOG2668|consen 372 LAKTNKISVWSHG 384 (428)
T ss_pred hhhcCeEEEEecC
Confidence 334455666664
No 48
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=84.68 E-value=12 Score=30.54 Aligned_cols=51 Identities=4% Similarity=0.083 Sum_probs=44.3
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+.+...+++.|.+++-+ +++++..++++.++..+..-+ .|.+|-+.++
T Consensus 104 ~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~f 156 (159)
T COG1580 104 EVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTNF 156 (159)
T ss_pred HHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeehh
Confidence 78899999999999999987 899999999999999998865 6777766554
No 49
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=84.18 E-value=1.6 Score=36.72 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=9.6
Q ss_pred EEEEEeeccceeccc
Q 024967 29 QMMLSINSATQGLKF 43 (260)
Q Consensus 29 ~~~~~vd~r~~~~~~ 43 (260)
+++++..+..+++++
T Consensus 11 ~~G~~~~~~~pG~~f 25 (215)
T cd03403 11 RLGKYHRTLGPGLHF 25 (215)
T ss_pred EcCcCccccCCcEEE
Confidence 455555566777776
No 50
>PLN03086 PRLI-interacting factor K; Provisional
Probab=83.39 E-value=3.1 Score=40.71 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=10.9
Q ss_pred HHHHHHHHhccCCCcEEEEc
Q 024967 217 YFDTMKEIGAASKSSAVFIP 236 (260)
Q Consensus 217 ~l~~l~~~~~~~~~~~v~lp 236 (260)
-|+++... +++..|+||
T Consensus 81 ~~~~~~~~---~~GdKI~LP 97 (567)
T PLN03086 81 IFEAVSFQ---GNGDKIKLP 97 (567)
T ss_pred EeeccccC---CCCCeEEcC
Confidence 44444443 567789999
No 51
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=82.62 E-value=2.1 Score=38.22 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHHHHH--------HHHHHHhhHHHHHHhhchhhHHHHH
Q 024967 149 ANEKAEAEKI--------LQIKRAEGEAESKYLSGLGIARQRQ 183 (260)
Q Consensus 149 ~~~~Ae~~~~--------a~i~~Aegeae~~~~~Aea~a~a~~ 183 (260)
.+.+||+++. +.+.+|||++.+.+++|+|+|+-..
T Consensus 166 erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~ 208 (280)
T cd03406 166 ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAK 208 (280)
T ss_pred HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHH
Confidence 4667888888 9999999999999999999987543
No 52
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=80.46 E-value=16 Score=31.16 Aligned_cols=36 Identities=28% Similarity=0.132 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHH
Q 024967 147 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQR 182 (260)
Q Consensus 147 ~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~ 182 (260)
+.-+..|+.++...+.+|+.+++.++..|+.+++..
T Consensus 30 ~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 30 GAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444454555555555555555555444443
No 53
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=80.15 E-value=9.8 Score=32.39 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=4.6
Q ss_pred EEEEcCC
Q 024967 232 AVFIPHG 238 (260)
Q Consensus 232 ~v~lp~~ 238 (260)
++++|..
T Consensus 132 ~~~i~~~ 138 (207)
T PRK01005 132 TAYIGKH 138 (207)
T ss_pred chhhhhc
Confidence 4778754
No 54
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=79.72 E-value=19 Score=27.05 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024967 134 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAES 170 (260)
Q Consensus 134 ~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~ 170 (260)
+++...-.+|.+.+..+..|+.++...+..|+.+++.
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k 39 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK 39 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655555555444444444
No 55
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.71 E-value=7.1 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024967 133 KRAMNEINAAARLRVAANEKAEAEKILQIKRAEG 166 (260)
Q Consensus 133 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aeg 166 (260)
+.+-.-...|+|+++..+.+||||+++...--++
T Consensus 205 qRA~F~VekA~qek~~~ivrAqGEaksAqliGeA 238 (290)
T KOG3090|consen 205 QRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA 238 (290)
T ss_pred hhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH
Confidence 3344445578888888889998888776555443
No 56
>PTZ00491 major vault protein; Provisional
Probab=71.90 E-value=25 Score=36.01 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=6.7
Q ss_pred HHhhHHHHHHhhchhh
Q 024967 163 RAEGEAESKYLSGLGI 178 (260)
Q Consensus 163 ~Aegeae~~~~~Aea~ 178 (260)
+|++++++..+++||+
T Consensus 720 ~a~a~aea~~ie~e~~ 735 (850)
T PTZ00491 720 EALAEAEARLIEAEAE 735 (850)
T ss_pred HHHHHHHHHhhhhhhH
Confidence 3344444444444443
No 57
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=71.88 E-value=9.5 Score=28.50 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHH
Q 024967 136 MNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 181 (260)
Q Consensus 136 i~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a 181 (260)
|...+.||.++..-+..|..++...+..|+.+|+..+...+.+++.
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~ 51 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEE 51 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777777777766555544443
No 58
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=8.2 Score=33.24 Aligned_cols=64 Identities=11% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhc--cCCCcEEEEcC
Q 024967 160 QIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGA--ASKSSAVFIPH 237 (260)
Q Consensus 160 ~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~v~lp~ 237 (260)
.+.+|+.++.+.++.||| ++++++.+++++... +.. ++..+.+|+-+.++. +.+.++.+||.
T Consensus 199 vVeKAeQqk~aavIsAEG-----------ds~aA~li~~sla~a-G~g----LielrrlEAa~dia~~Ls~s~nv~YLp~ 262 (271)
T KOG3083|consen 199 VVEKAEQQKKAAVISAEG-----------DSKAAELIANSLATA-GDG----LIELRRLEAAEDIAYQLSRSRNVTYLPA 262 (271)
T ss_pred HHHHHhhhhhhheeeccc-----------chHHHHHHHHHHhhc-CCc----eeeehhhhhHHHHHHHHhcCCCceeccC
Confidence 445555555555555554 555555555554321 111 223356677666554 46678889995
Q ss_pred CC
Q 024967 238 GP 239 (260)
Q Consensus 238 ~~ 239 (260)
..
T Consensus 263 g~ 264 (271)
T KOG3083|consen 263 GQ 264 (271)
T ss_pred Cc
Confidence 43
No 59
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.09 E-value=51 Score=26.11 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=41.0
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+.+-..+++.+.+++-+ +|+.+.+++++.++..+.+ | .|.+|-+.+.
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 56688888899999999886 7999999999999998876 4 5777766554
No 60
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=68.91 E-value=41 Score=24.30 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=40.6
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+.+-..+++++.+++-+ ++..+.+++++.+++.+.+- .|.+|-+.++
T Consensus 45 ~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 45 RIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 67788899999999999985 89999999999999988543 4677766654
No 61
>PRK09098 type III secretion system protein HrpB; Validated
Probab=67.40 E-value=26 Score=30.40 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhchh
Q 024967 150 NEKAEAEKILQIKRAEGEAESKYLSGLG 177 (260)
Q Consensus 150 ~~~Ae~~~~a~i~~Aegeae~~~~~Aea 177 (260)
+.+|+.+++..+..|+.+++.++..|+.
T Consensus 45 la~Ar~~A~~Il~~A~~~A~~I~~~A~~ 72 (233)
T PRK09098 45 LAAARARAERIVAEARAQAEAILEAARR 72 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555543
No 62
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=64.97 E-value=72 Score=25.67 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.9
Q ss_pred HhHHHhhHH-HHHHH
Q 024967 89 LDDAFEQKN-EIAKA 102 (260)
Q Consensus 89 l~ei~~~R~-~i~~~ 102 (260)
+..++..|. .|...
T Consensus 33 i~~~l~~R~~~I~~~ 47 (164)
T PRK14471 33 ILGAVKEREDSIKNA 47 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445565555 34443
No 63
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=63.30 E-value=91 Score=26.34 Aligned_cols=33 Identities=15% Similarity=-0.025 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHH
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIARQRQA 184 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~ 184 (260)
+|+..++..+..|+.+++..+..|+.+-+....
T Consensus 126 eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~ 158 (205)
T PRK06231 126 EALQLKSELEKEANRQANLIIFQARQEIEKERR 158 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555544444333
No 64
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=63.29 E-value=85 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHHHH
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIARQR 182 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~ 182 (260)
+|+.++...+.+|+.++++.+..|+...+..
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E 113 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444433
No 65
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=63.18 E-value=23 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhH
Q 024967 149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLR 190 (260)
Q Consensus 149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a 190 (260)
.+..||.++...+..|+.++..++-.|+.+|+..+.....+.
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777677666666554444333
No 66
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=62.26 E-value=23 Score=27.13 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHH
Q 024967 146 RVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAI 185 (260)
Q Consensus 146 ~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~ 185 (260)
-.+....||.+++..+..|+..+..++-.|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777665544
No 67
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=62.17 E-value=71 Score=25.55 Aligned_cols=9 Identities=0% Similarity=0.379 Sum_probs=5.3
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 27 i~~~l~~R~ 35 (159)
T PRK09173 27 IARSLDARA 35 (159)
T ss_pred HHHHHHHHH
Confidence 556666555
No 68
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=61.71 E-value=45 Score=25.36 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhHHhHHHHhh
Q 024967 179 ARQRQAIVDGLRDSVLGFSI 198 (260)
Q Consensus 179 a~a~~~~aea~a~a~~~~~~ 198 (260)
.++..+.++|++++-.+.++
T Consensus 69 ~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 69 EEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 69
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.50 E-value=78 Score=25.62 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 024967 210 DMVLVTQYFDTMK 222 (260)
Q Consensus 210 ~~~~~~~~l~~l~ 222 (260)
...+..||.+..+
T Consensus 128 av~iAsk~~~~~~ 140 (154)
T PRK06568 128 VIKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHHhc
Confidence 3466777877654
No 70
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=61.11 E-value=74 Score=25.89 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=4.4
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 47 i~~~l~~R~ 55 (167)
T PRK08475 47 LKNFYKSRI 55 (167)
T ss_pred HHHHHHHHH
Confidence 344555554
No 71
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=60.94 E-value=45 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.024 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHHHHHHhhchhh
Q 024967 156 EKILQIKRAEGEAESKYLSGLGI 178 (260)
Q Consensus 156 ~~~a~i~~Aegeae~~~~~Aea~ 178 (260)
.....+..|+.+++..+..|+.+
T Consensus 40 ~~~eii~eA~~eA~~ile~Ak~e 62 (103)
T PRK08404 40 IEEEIIKKAEEEAQKLIEKKKKE 62 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555433
No 72
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=60.81 E-value=27 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 024967 143 ARLRVAANEKAEAEKILQIKRAEGEAESKYL 173 (260)
Q Consensus 143 e~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~ 173 (260)
.+.++.-+..|+.+++..+..|+.+++..+.
T Consensus 29 ~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 29 QQQAREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555444
No 73
>PRK15322 invasion protein OrgB; Provisional
Probab=60.80 E-value=1e+02 Score=26.13 Aligned_cols=31 Identities=3% Similarity=0.236 Sum_probs=19.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHhccCCCcEEEEcCC
Q 024967 204 TAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHG 238 (260)
Q Consensus 204 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~lp~~ 238 (260)
+.|+.. +.++..|+-.++.. + +.--+.||.+
T Consensus 90 d~pd~L-L~~le~Wl~~l~~~--~-~pL~l~lP~~ 120 (210)
T PRK15322 90 DHPETL-LTVLDEWLRDFDKP--E-GQLFLTLPVN 120 (210)
T ss_pred cCHHHH-HHHHHHHHHhCccc--c-CceeEecChh
Confidence 456652 45566788888875 2 3445788864
No 74
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=60.73 E-value=86 Score=25.10 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.4
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 47 i~~~l~~R~ 55 (156)
T CHL00118 47 LLKVLDERK 55 (156)
T ss_pred HHHHHHHHH
Confidence 444555554
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=58.22 E-value=1e+02 Score=25.14 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=7.1
Q ss_pred HhHHHhhHH-HHHHH
Q 024967 89 LDDAFEQKN-EIAKA 102 (260)
Q Consensus 89 l~ei~~~R~-~i~~~ 102 (260)
+..++..|. .|...
T Consensus 43 i~~~l~~R~~~I~~~ 57 (175)
T PRK14472 43 ILSALEEREKGIQSS 57 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666555 34443
No 76
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.08 E-value=1.2e+02 Score=26.50 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHH
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIAR 180 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~ 180 (260)
+|+.+++..+.+|+.+++..+..++...+
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie 111 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544433
No 77
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=57.97 E-value=91 Score=24.94 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=5.2
Q ss_pred HHHhhHHHHHHhhc
Q 024967 162 KRAEGEAESKYLSG 175 (260)
Q Consensus 162 ~~Aegeae~~~~~A 175 (260)
..|+.++...+..|
T Consensus 84 ~~A~~ea~~ii~~A 97 (156)
T CHL00118 84 SKARKEAQLEITQS 97 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 78
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.82 E-value=1.2e+02 Score=25.70 Aligned_cols=18 Identities=6% Similarity=-0.392 Sum_probs=7.4
Q ss_pred HhhchhhHHHHHHHHHhh
Q 024967 172 YLSGLGIARQRQAIVDGL 189 (260)
Q Consensus 172 ~~~Aea~a~a~~~~aea~ 189 (260)
+..|+.+++..+..|+.+
T Consensus 135 ~~~A~~eae~ii~~A~~~ 152 (205)
T PRK06231 135 EKEANRQANLIIFQARQE 152 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 79
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=57.63 E-value=1e+02 Score=25.10 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=5.1
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 43 i~~~l~~R~ 51 (173)
T PRK13453 43 LKDVMDKRE 51 (173)
T ss_pred HHHHHHHHH
Confidence 555666554
No 80
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=56.69 E-value=97 Score=24.43 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=11.1
Q ss_pred HHHHHhhHHHHHHhhchhhHHHHHHH
Q 024967 160 QIKRAEGEAESKYLSGLGIARQRQAI 185 (260)
Q Consensus 160 ~i~~Aegeae~~~~~Aea~a~a~~~~ 185 (260)
.+.+|+.+++..+..|+.+.+.....
T Consensus 82 a~~~A~~ea~~~~~~A~~~~~~~~~~ 107 (141)
T PRK08476 82 AIAKAKEEAEKKIEAKKAELESKYEA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 81
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=56.51 E-value=96 Score=25.25 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=7.7
Q ss_pred HhHHHhhHHH-HHHH
Q 024967 89 LDDAFEQKNE-IAKA 102 (260)
Q Consensus 89 l~ei~~~R~~-i~~~ 102 (260)
+..++.+|.. |...
T Consensus 44 I~~~l~~R~~~I~~~ 58 (174)
T PRK07352 44 LGKILEERREAILQA 58 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 5667766653 4443
No 82
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.57 E-value=1e+02 Score=25.12 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=7.5
Q ss_pred HhHHHhhHH-HHHHH
Q 024967 89 LDDAFEQKN-EIAKA 102 (260)
Q Consensus 89 l~ei~~~R~-~i~~~ 102 (260)
+..++..|. .|...
T Consensus 41 i~~~l~~R~~~I~~~ 55 (173)
T PRK13460 41 ILKALDERASGVQND 55 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666665 34443
No 83
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=55.19 E-value=1.1e+02 Score=25.28 Aligned_cols=7 Identities=29% Similarity=0.140 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 024967 152 KAEAEKI 158 (260)
Q Consensus 152 ~Ae~~~~ 158 (260)
.++++++
T Consensus 22 ~~eA~~~ 28 (185)
T PRK01194 22 NDEYSKR 28 (185)
T ss_pred HHHHHHH
Confidence 3333333
No 84
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=54.69 E-value=1.2e+02 Score=24.76 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=7.0
Q ss_pred HHHHHHhhHHHHHHhhch
Q 024967 159 LQIKRAEGEAESKYLSGL 176 (260)
Q Consensus 159 a~i~~Aegeae~~~~~Ae 176 (260)
..+..|+.++++.+..|+
T Consensus 101 ~~~~~A~~ea~~~~~~a~ 118 (173)
T PRK13460 101 KLLEETNNEVKAQKDQAV 118 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333343333333
No 85
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=54.61 E-value=43 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024967 141 AAARLRVAANEKAEAEKILQIK 162 (260)
Q Consensus 141 ~Ae~~~~a~~~~Ae~~~~a~i~ 162 (260)
.|++++++-+..|+.+++..+.
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555554444
No 86
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=54.23 E-value=1.2e+02 Score=24.62 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=7.5
Q ss_pred HhHHHhhHH-HHHHHH
Q 024967 89 LDDAFEQKN-EIAKAV 103 (260)
Q Consensus 89 l~ei~~~R~-~i~~~i 103 (260)
+..++..|. .|...+
T Consensus 35 i~~~le~R~~~I~~~l 50 (167)
T PRK14475 35 LAGALDAYAAKIQAEL 50 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455666554 344433
No 87
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=54.08 E-value=1.4e+02 Score=25.33 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=5.4
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 78 I~~vLe~R~ 86 (204)
T PRK09174 78 IGGIIETRR 86 (204)
T ss_pred HHHHHHHHH
Confidence 556666665
No 88
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=53.95 E-value=74 Score=22.70 Aligned_cols=29 Identities=31% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024967 142 AARLRVAANEKAEAEKILQIKRAEGEAES 170 (260)
Q Consensus 142 Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~ 170 (260)
++.+.+..+..|+.++...+..|+.+++.
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~ 35 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEARE 35 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333333
No 89
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=52.42 E-value=1.3e+02 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.039 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhchhhHHHH
Q 024967 152 KAEAEKILQIKRAEGEAESKYLSGLGIARQR 182 (260)
Q Consensus 152 ~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~ 182 (260)
.|+..++..+..|+.++++.+..|+...+..
T Consensus 102 ~ae~~~~~il~~A~~ea~~~~~~a~~~ie~E 132 (184)
T CHL00019 102 EIEREKENLINQAKEDLERLENYKNETIRFE 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444333
No 90
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=50.95 E-value=1.3e+02 Score=24.29 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.8
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 29 I~~~LeeR~ 37 (154)
T PRK06568 29 ILNSLDAKI 37 (154)
T ss_pred HHHHHHHHH
Confidence 334444443
No 91
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=50.85 E-value=1.2e+02 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEc
Q 024967 212 VLVTQYFDTMKEIGAASKSSAVFIP 236 (260)
Q Consensus 212 ~~~~~~l~~l~~~~~~~~~~~v~lp 236 (260)
-+..++++.+..+. ++...+=.|
T Consensus 145 ~lId~~i~~l~~~~--~~~~~~~~~ 167 (445)
T PRK13428 145 ATVDRFLDELDAMA--PSTADVDYP 167 (445)
T ss_pred HHHHHHHHHhhccC--CCchhhcCc
Confidence 45567888888875 333334444
No 92
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=48.58 E-value=1.4e+02 Score=23.93 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=4.8
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 33 i~~~l~~R~ 41 (164)
T PRK14473 33 VLNLLNERT 41 (164)
T ss_pred HHHHHHHHH
Confidence 444555555
No 93
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=48.35 E-value=1.4e+02 Score=23.82 Aligned_cols=10 Identities=0% Similarity=0.375 Sum_probs=5.8
Q ss_pred cHhHHHhhHH
Q 024967 88 NLDDAFEQKN 97 (260)
Q Consensus 88 ~l~ei~~~R~ 97 (260)
.+..++..|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 3556666665
No 94
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=47.21 E-value=1.6e+02 Score=24.29 Aligned_cols=11 Identities=0% Similarity=0.283 Sum_probs=6.1
Q ss_pred cHhHHHhhHHH
Q 024967 88 NLDDAFEQKNE 98 (260)
Q Consensus 88 ~l~ei~~~R~~ 98 (260)
.+..++..|..
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 35556666653
No 95
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.07 E-value=1.6e+02 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=5.6
Q ss_pred HHHHHhhHHHHHHhh
Q 024967 160 QIKRAEGEAESKYLS 174 (260)
Q Consensus 160 ~i~~Aegeae~~~~~ 174 (260)
.+..|+.+++..+..
T Consensus 104 ~~~~A~~ea~~~~~~ 118 (173)
T PRK13453 104 IIHEANVRANGMIET 118 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 96
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=46.81 E-value=1.4e+02 Score=23.35 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=3.0
Q ss_pred HHHhhHH
Q 024967 91 DAFEQKN 97 (260)
Q Consensus 91 ei~~~R~ 97 (260)
.++..|.
T Consensus 22 ~~l~~R~ 28 (147)
T TIGR01144 22 KAIETRQ 28 (147)
T ss_pred HHHHHHH
Confidence 3444443
No 97
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.43 E-value=1.5e+02 Score=23.47 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.8
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 29 i~~~l~~R~ 37 (156)
T PRK05759 29 IMKALEERQ 37 (156)
T ss_pred HHHHHHHHH
Confidence 445555554
No 98
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=46.27 E-value=1.4e+02 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHhhHHHHHHhhc
Q 024967 160 QIKRAEGEAESKYLSG 175 (260)
Q Consensus 160 ~i~~Aegeae~~~~~A 175 (260)
.+..|+.+++..+..|
T Consensus 91 i~~~A~~ea~~~~~~a 106 (159)
T PRK13461 91 IVKEAHEEADLIIERA 106 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 99
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=45.31 E-value=1.1e+02 Score=21.78 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=4.8
Q ss_pred HHhhHHHHHHhhc
Q 024967 163 RAEGEAESKYLSG 175 (260)
Q Consensus 163 ~Aegeae~~~~~A 175 (260)
.|+.+++.++..|
T Consensus 43 ~A~~ea~~ii~~A 55 (85)
T TIGR02926 43 EASKLGEEIIKEA 55 (85)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 100
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.23 E-value=1.4e+02 Score=24.54 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.5
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 49 I~~~l~~R~ 57 (184)
T CHL00019 49 LSDLLDNRK 57 (184)
T ss_pred HHHHHHHHH
Confidence 444555444
No 101
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.44 E-value=1.8e+02 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHHhhchhhHH
Q 024967 160 QIKRAEGEAESKYLSGLGIAR 180 (260)
Q Consensus 160 ~i~~Aegeae~~~~~Aea~a~ 180 (260)
...+||+|++.++..|.|+++
T Consensus 208 E~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 208 EMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555444
No 102
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=44.05 E-value=1.6e+02 Score=23.20 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.1
Q ss_pred HHHhhHH
Q 024967 91 DAFEQKN 97 (260)
Q Consensus 91 ei~~~R~ 97 (260)
.++..|.
T Consensus 34 ~~l~~R~ 40 (141)
T PRK08476 34 KFMDNRN 40 (141)
T ss_pred HHHHHHH
Confidence 3444444
No 103
>PRK09098 type III secretion system protein HrpB; Validated
Probab=43.99 E-value=1.2e+02 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.048 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHH
Q 024967 146 RVAANEKAEAEKILQIKRAEGEAESKYLSGLGIAR 180 (260)
Q Consensus 146 ~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~ 180 (260)
++|..+-++++.++..+.+++..+......+||.+
T Consensus 50 ~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~e 84 (233)
T PRK09098 50 ARAERIVAEARAQAEAILEAARREADRSARRGYAA 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555555555555555554455555543
No 104
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.99 E-value=1.5e+02 Score=22.94 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=4.6
Q ss_pred HhHHHhhHH
Q 024967 89 LDDAFEQKN 97 (260)
Q Consensus 89 l~ei~~~R~ 97 (260)
+..++..|.
T Consensus 30 i~~~l~~R~ 38 (140)
T PRK07353 30 VGKVVEERE 38 (140)
T ss_pred HHHHHHHHH
Confidence 445555554
No 105
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=43.92 E-value=14 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=12.8
Q ss_pred ceecccccceeeceecccceeecce
Q 024967 2 FVVKPRLRTMYLSMLLHLFNTVPWH 26 (260)
Q Consensus 2 ~~v~~r~~~~~~~~~~PGl~~~~~~ 26 (260)
|.|.|+|.| . +.++||+||+.|-
T Consensus 24 f~~~~~F~G-I-K~IPpG~Hfi~~s 46 (362)
T PF05282_consen 24 FTVGPNFKG-I-KMIPPGVHFIHYS 46 (362)
T ss_dssp EEE-TT--E-E-EEE-TT-EEEEEE
T ss_pred EEcCCCceE-E-ecCCCCceEEEEe
Confidence 678888876 2 3469999998654
No 106
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=43.30 E-value=1.2e+02 Score=22.92 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhH
Q 024967 136 MNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIA 179 (260)
Q Consensus 136 i~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a 179 (260)
|..-+.||.++...+..|+-.+.....+|+-||+..+..=..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qr 51 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQR 51 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788777777888888888888888888887766544433
No 107
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=42.65 E-value=1.8e+02 Score=23.45 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=40.9
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcC--eEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYG--YEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~G--i~v~~v~I~~i 126 (260)
.+.+.+-..+++.+.+++.+ ++..+.+++++.++..+..-+ -.|.+|-+.++
T Consensus 104 ~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 104 EVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 56678888899999999976 788999999999999886532 35777766654
No 108
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=42.38 E-value=1.5e+02 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Q 024967 147 VAANEKAEAEKILQIKRAEGEAES 170 (260)
Q Consensus 147 ~a~~~~Ae~~~~a~i~~Aegeae~ 170 (260)
.+-+..|+.+.+..+..|+.+++.
T Consensus 91 ~~~l~~a~~q~e~~~~ea~~e~e~ 114 (281)
T PRK06669 91 SSIIEKLQMQIEREQEEWEEELER 114 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444334433333
No 109
>PRK15322 invasion protein OrgB; Provisional
Probab=39.81 E-value=1.2e+02 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhc
Q 024967 151 EKAEAEKILQIKRAEGEAESKYLSG 175 (260)
Q Consensus 151 ~~Ae~~~~a~i~~Aegeae~~~~~A 175 (260)
.+|+.++...+.+|+.++|+.+..|
T Consensus 19 ~qA~~kA~~ii~qA~~eaE~ir~~A 43 (210)
T PRK15322 19 QQARRRAKRILRQAEEEAETLRMYA 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554444
No 110
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.69 E-value=2e+02 Score=23.27 Aligned_cols=8 Identities=0% Similarity=0.119 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 024967 217 YFDTMKEI 224 (260)
Q Consensus 217 ~l~~l~~~ 224 (260)
|-+.+-.+
T Consensus 126 ~~~~~i~~ 133 (155)
T PRK06569 126 KSEAIIKL 133 (155)
T ss_pred HHHHHHHH
Confidence 44444443
No 111
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=39.57 E-value=1.9e+02 Score=22.81 Aligned_cols=23 Identities=17% Similarity=-0.096 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhch
Q 024967 154 EAEKILQIKRAEGEAESKYLSGL 176 (260)
Q Consensus 154 e~~~~a~i~~Aegeae~~~~~Ae 176 (260)
+..++..+..|+.+++..+..|+
T Consensus 84 ~~~~~~~~~~a~~ea~~~~~~a~ 106 (156)
T PRK05759 84 AQIIEEAKAEAEAEAARIKAQAQ 106 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 112
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=39.55 E-value=91 Score=24.63 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=42.2
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhc-C-eEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~-G-i~v~~v~I~~i 126 (260)
.+.+.+-..+++.+.+++.+ +|..+.+++++.++..+.+- | -.|++|-+.+.
T Consensus 79 ~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 79 LIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 67788888999999999986 89999999999999999753 2 24777766654
No 113
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=38.97 E-value=1.8e+02 Score=24.02 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.3
Q ss_pred CcEEEE
Q 024967 230 SSAVFI 235 (260)
Q Consensus 230 ~~~v~l 235 (260)
+.++|-
T Consensus 120 ~~i~i~ 125 (198)
T PRK03963 120 DKVVVR 125 (198)
T ss_pred CcEEEE
Confidence 334333
No 114
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=37.53 E-value=2.1e+02 Score=22.77 Aligned_cols=8 Identities=38% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHhhH
Q 024967 160 QIKRAEGE 167 (260)
Q Consensus 160 ~i~~Aege 167 (260)
.+..|+.+
T Consensus 73 ii~~A~~~ 80 (159)
T PRK09173 73 IVAAAERE 80 (159)
T ss_pred HHHHHHHH
Confidence 33333333
No 115
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=34.87 E-value=1.6e+02 Score=25.89 Aligned_cols=40 Identities=10% Similarity=-0.134 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHH
Q 024967 143 ARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQR 182 (260)
Q Consensus 143 e~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~ 182 (260)
+.........+..++.+.+.+|+.+++..+..|+.+++..
T Consensus 76 ~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~ 115 (281)
T PRK06669 76 EEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERL 115 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666777777777777777666555443
No 116
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=33.21 E-value=2.7e+02 Score=22.77 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=7.6
Q ss_pred HhHHHhhHH-HHHHH
Q 024967 89 LDDAFEQKN-EIAKA 102 (260)
Q Consensus 89 l~ei~~~R~-~i~~~ 102 (260)
+..++..|. .|...
T Consensus 52 v~~~L~~R~~~I~~~ 66 (184)
T PRK13455 52 IGGMLDKRAEGIRSE 66 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777665 34443
No 117
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.44 E-value=3e+02 Score=22.98 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=40.1
Q ss_pred HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+.+...+++.+.+|+- ++.++.+++++.+|..+.+- .|.+|-+.+.
T Consensus 128 qIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV~~VYFTeF 176 (181)
T PRK06654 128 RLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EIKDIAFTQI 176 (181)
T ss_pred HHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ceEEEEEEEE
Confidence 6779999999999999998 88999999999999988753 4556555443
No 118
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=31.64 E-value=1.3e+02 Score=24.54 Aligned_cols=50 Identities=8% Similarity=0.114 Sum_probs=40.2
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+.+-..+++.+.+++.+ ++..+.+++.+.++..+.+- .|.+|-+.++
T Consensus 112 ~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 112 RVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred HHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 56678888889999999986 78999999999999988763 4777776654
No 119
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=29.54 E-value=3.7e+02 Score=23.18 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 024967 214 VTQYFDTMKE 223 (260)
Q Consensus 214 ~~~~l~~l~~ 223 (260)
.-++++.+.+
T Consensus 150 id~~i~~l~~ 159 (246)
T TIGR03321 150 VDVFVQRLRT 159 (246)
T ss_pred HHHHHHHhhc
Confidence 3445544433
No 120
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.53 E-value=1.5e+02 Score=24.69 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=40.6
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 126 (260)
.+.+++-..+++.+.+++.+ +|..+.+++.+.++..+.+ | .|.+|-+.++
T Consensus 128 ~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 128 VIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred HHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 66788888899999999986 7899999999999999976 3 4666666554
No 121
>KOG3937 consensus mRNA splicing factor [RNA processing and modification]
Probab=28.44 E-value=31 Score=31.63 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.3
Q ss_pred ceecccccceeeceecccceeecce
Q 024967 2 FVVKPRLRTMYLSMLLHLFNTVPWH 26 (260)
Q Consensus 2 ~~v~~r~~~~~~~~~~PGl~~~~~~ 26 (260)
|-|.|.|+| -+.+.||+||+.|.
T Consensus 34 ~~vgpkF~G--IKmIPpGVHfv~ys 56 (371)
T KOG3937|consen 34 YEVGPKFRG--IKMIPPGVHFVHYS 56 (371)
T ss_pred eecCCCCCC--ccccCCceEEEEee
Confidence 556777776 34679999997543
No 122
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=27.24 E-value=2.2e+02 Score=23.16 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.9
Q ss_pred CcEEEEc
Q 024967 230 SSAVFIP 236 (260)
Q Consensus 230 ~~~v~lp 236 (260)
.-+|+++
T Consensus 114 ~~~v~~~ 120 (198)
T PF01991_consen 114 EVIVYVN 120 (198)
T ss_dssp CEEEEEC
T ss_pred ceEEecc
Confidence 3344443
No 123
>PHA00448 hypothetical protein
Probab=26.96 E-value=2.2e+02 Score=19.69 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=12.0
Q ss_pred HhhHHHHHHhhchhhHHHHHHHHHhhHHhHHH
Q 024967 164 AEGEAESKYLSGLGIARQRQAIVDGLRDSVLG 195 (260)
Q Consensus 164 Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~ 195 (260)
|+.++++.+..|..-......-.++-.++.++
T Consensus 27 Ar~~A~~A~~lakqs~~l~~aA~~~~~~AAri 58 (70)
T PHA00448 27 ARKDATRARRLAKQSRELSDAASAGVTEAARI 58 (70)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 33334444444433333223333333344443
No 124
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=26.96 E-value=3.4e+02 Score=21.86 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHh
Q 024967 130 EHVKRAMNEIN--AAARLRVAANEKAEAEK-----ILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDS 192 (260)
Q Consensus 130 ~~i~~ai~~~~--~Ae~~~~a~~~~Ae~~~-----~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a 192 (260)
+-+..+++.+. .++...+|.....+.+. ++.+..|+.++..++..|+.+++.........++.
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~ 98 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEE 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.95 E-value=1.9e+02 Score=23.57 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=40.3
Q ss_pred HhHHHHHHHcccCcHhHHHh--hHHHHHHHHHHHHHHHhhhc-C-eEEEEEEeeec
Q 024967 75 VNCSVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 126 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~--~R~~i~~~i~~~l~~~~~~~-G-i~v~~v~I~~i 126 (260)
.+.+.+-..+++.+.+++-+ ++..+.+++.+.++..++.. | -.|.+|-+.++
T Consensus 112 ~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 112 LIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 57788889999999999986 78888888888888877654 3 25667766554
No 126
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=26.73 E-value=6.7e+02 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=21.6
Q ss_pred HHHHHH-HhhhcCeEEEEEE----eeeccCcHHHHHHHHHHH
Q 024967 104 EEELEK-AMSAYGYEIVQTL----IVDIEPDEHVKRAMNEIN 140 (260)
Q Consensus 104 ~~~l~~-~~~~~Gi~v~~v~----I~~i~~p~~i~~ai~~~~ 140 (260)
-+.++. .|...||.|++-. +=....|.+++...+++.
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~ 561 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKE 561 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHH
Confidence 445666 5888899999852 222334555555544443
No 127
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=26.46 E-value=1.6e+02 Score=23.28 Aligned_cols=6 Identities=0% Similarity=0.002 Sum_probs=2.4
Q ss_pred CcEEEE
Q 024967 230 SSAVFI 235 (260)
Q Consensus 230 ~~~v~l 235 (260)
.-+|.+
T Consensus 115 ~v~I~v 120 (166)
T TIGR02499 115 RLTLRV 120 (166)
T ss_pred ceEEEE
Confidence 333444
No 128
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=26.22 E-value=2.2e+02 Score=24.70 Aligned_cols=6 Identities=17% Similarity=0.584 Sum_probs=2.4
Q ss_pred HHHHHH
Q 024967 219 DTMKEI 224 (260)
Q Consensus 219 ~~l~~~ 224 (260)
+++..+
T Consensus 167 ~al~~l 172 (255)
T TIGR03825 167 QVLSEV 172 (255)
T ss_pred HHHHhc
Confidence 334444
No 129
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=25.49 E-value=4.1e+02 Score=23.72 Aligned_cols=11 Identities=0% Similarity=0.111 Sum_probs=6.8
Q ss_pred HHHHHHHHHhc
Q 024967 216 QYFDTMKEIGA 226 (260)
Q Consensus 216 ~~l~~l~~~~~ 226 (260)
+||++++..+.
T Consensus 211 t~lesI~t~f~ 221 (276)
T PF12037_consen 211 TVLESINTTFS 221 (276)
T ss_pred HHHHHHHHHHH
Confidence 46776666653
No 130
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.69 E-value=3e+02 Score=23.88 Aligned_cols=44 Identities=25% Similarity=0.415 Sum_probs=27.8
Q ss_pred cHhHHHhhHHHHHHHHHHHHHHHh-hhcCeEEEEEEeeeccCcHHHHH
Q 024967 88 NLDDAFEQKNEIAKAVEEELEKAM-SAYGYEIVQTLIVDIEPDEHVKR 134 (260)
Q Consensus 88 ~l~ei~~~R~~i~~~i~~~l~~~~-~~~Gi~v~~v~I~~i~~p~~i~~ 134 (260)
.-.+++.+-+.|++.+.+ +-+ ++.-++|.++.|-|++....+-.
T Consensus 187 ~h~~vlenpd~isktvl~---kgld~gtafeilsidiadvdigkniga 231 (328)
T COG4864 187 EHTKVLENPDSISKTVLE---KGLDSGTAFEILSIDIADVDIGKNIGA 231 (328)
T ss_pred chhhHhcCccHHHHHHHH---ccCCCCceeEEEEeeeecccccccccc
Confidence 334566666677765532 222 22347899999999998887543
No 131
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=22.01 E-value=5e+02 Score=22.13 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=7.9
Q ss_pred HHHHHHhccCCCcEEEEc
Q 024967 219 DTMKEIGAASKSSAVFIP 236 (260)
Q Consensus 219 ~~l~~~~~~~~~~~v~lp 236 (260)
.++..+-. +..-++-+|
T Consensus 122 ~Al~~~~~-~~~v~l~V~ 138 (207)
T PF06635_consen 122 QALSQIRQ-GAEVTLRVA 138 (207)
T ss_pred HHHHHHhc-CCeEEEEEC
Confidence 55666642 333334443
No 132
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.08 E-value=32 Score=26.35 Aligned_cols=27 Identities=22% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhchhhHHHHHHHHHhhH
Q 024967 164 AEGEAESKYLSGLGIARQRQAIVDGLR 190 (260)
Q Consensus 164 Aegeae~~~~~Aea~a~a~~~~aea~a 190 (260)
|+.+++.++..|+.++..++..|..++
T Consensus 83 A~~eA~~i~~~A~~~a~~i~~~A~~~~ 109 (131)
T PF05103_consen 83 AEEEAEEIIEEAQKEAEEIIEEARAEA 109 (131)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333333
No 133
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=21.07 E-value=3.6e+02 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=13.5
Q ss_pred EeeeccCcHHHHHHHHHHHH
Q 024967 122 LIVDIEPDEHVKRAMNEINA 141 (260)
Q Consensus 122 ~I~~i~~p~~i~~ai~~~~~ 141 (260)
......+|+++...+...+.
T Consensus 53 ~~~~~~lP~~l~~~~~~~~~ 72 (120)
T PF11740_consen 53 SEAAPDLPEALQDALAELMA 72 (120)
T ss_pred cccccCCChhHHHHHHHHHH
Confidence 35566788998777665543
Done!