Query 024967
Match_columns 260
No_of_seqs 172 out of 1616
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 9.2E-26 3.2E-30 188.1 14.1 134 26-161 2-147 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 7.6E-23 2.6E-27 161.4 8.0 119 22-142 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.6E-20 5.4E-25 149.9 4.3 117 26-144 3-140 (143)
4 2rpb_A Hypothetical membrane p 99.6 2.7E-16 9.3E-21 120.0 5.8 98 33-131 4-113 (113)
5 2zuo_A MVP, major vault protei 97.4 0.0042 1.4E-07 60.8 15.6 56 75-130 574-647 (861)
6 3v6i_B V-type ATP synthase, su 90.0 3.1 0.00011 30.1 9.0 37 144-180 16-52 (105)
7 3bk6_A PH stomatin; archaea, t 77.6 2.8 9.6E-05 33.5 4.8 19 212-230 162-180 (188)
8 3v6i_A V-type ATP synthase sub 76.4 5.1 0.00017 32.0 6.0 20 140-159 7-26 (187)
9 4efa_G V-type proton ATPase su 74.4 20 0.00067 26.7 8.3 49 134-182 10-58 (119)
10 3v6i_B V-type ATP synthase, su 68.4 22 0.00077 25.6 7.0 28 141-168 24-51 (105)
11 3v6i_A V-type ATP synthase sub 63.8 35 0.0012 26.9 8.4 6 219-224 109-114 (187)
12 2k6i_A Uncharacterized protein 60.3 10 0.00036 24.3 3.6 10 141-150 23-32 (56)
13 2zuo_A MVP, major vault protei 55.9 51 0.0018 32.6 9.2 15 11-25 477-491 (861)
14 2kk7_A V-type ATP synthase sub 53.5 38 0.0013 21.1 6.2 15 162-176 26-40 (52)
15 4efa_G V-type proton ATPase su 44.5 84 0.0029 23.2 7.0 39 147-185 12-50 (119)
16 4efa_E V-type proton ATPase su 41.7 1.3E+02 0.0045 24.4 8.7 8 129-136 10-17 (233)
17 3sbt_B A1 cistron-splicing fac 36.6 25 0.00085 31.3 3.4 23 2-26 22-47 (363)
18 2b5u_A Colicin E3; high resolu 30.3 3.3E+02 0.011 25.2 9.9 36 114-149 278-313 (551)
19 2acm_B Mucin-1; auto-catalytic 29.4 84 0.0029 19.9 4.0 24 108-131 29-52 (55)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.93 E-value=9.2e-26 Score=188.12 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=115.7
Q ss_pred eeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH--------HhHHHHHHHcccCcHhHHH
Q 024967 26 HIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL--------VNCSVIRASIPKLNLDDAF 93 (260)
Q Consensus 26 ~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~--------~~~~alR~vi~~~~l~ei~ 93 (260)
|++++.+ +|+|.++++++++.+.|+|++. +.+| .+.| +|.+++|.+. ++.+++|+++|++++++++
T Consensus 2 fi~~v~~-vd~r~~~~~v~~~~v~TkD~~~-V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell 79 (188)
T 3bk6_A 2 IFEKAVI-VDLRTQVLDVPVQETITKDNVP-VRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL 79 (188)
T ss_dssp CEEECCC-CCSSCEEEEEEEEEEECTTSCE-EEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred ceEEEEE-EeeeEEEEecCCceeEcCCCCE-EEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 5788865 9999999999999999999998 7788 4444 4445666553 5779999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024967 94 EQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQI 161 (260)
Q Consensus 94 ~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i 161 (260)
++|++|+..+++.+++.+.+|||.|.+|.|++|.||+++.++|+.++.|||+++|.+.+|||++++..
T Consensus 80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~ 147 (188)
T 3bk6_A 80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAE 147 (188)
T ss_dssp HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776666666655543
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.88 E-value=7.6e-23 Score=161.41 Aligned_cols=119 Identities=17% Similarity=0.268 Sum_probs=89.6
Q ss_pred eecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH--------HhHHHHHHHcccCcH
Q 024967 22 TVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL--------VNCSVIRASIPKLNL 89 (260)
Q Consensus 22 ~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~--------~~~~alR~vi~~~~l 89 (260)
+..||++++.+ +|+|.+.+++|++.++|+|++. +.+| +++| ||.+++|++. ++++++|+++|++++
T Consensus 3 l~~P~id~v~~-vd~R~~~~d~~~q~vlT~D~~~-v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l 80 (133)
T 4fvg_A 3 LGSPSTDSAAK-VDMRTISFDIPPQEVLTKDSVT-ISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNL 80 (133)
T ss_dssp ------------CCCSCEEEEEEEEEEECTTCCE-EEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCH
T ss_pred CCCCceeEEEE-EEeEEEEecCCCeEEEeCCCCE-EEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccH
Confidence 55799999986 9999999999999999999998 7788 4544 5567777765 678999999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHH
Q 024967 90 DDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 142 (260)
Q Consensus 90 ~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A 142 (260)
++++++|++|+..+++.+++.+++|||+|.+|.|+++.||+++++||+++++|
T Consensus 81 deil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 81 SQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999887765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.80 E-value=1.6e-20 Score=149.87 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=101.1
Q ss_pred eeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeec----chhhhHHH----------------HhHHHHHHHc
Q 024967 26 HIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHH----SHAIYDLL----------------VNCSVIRASI 84 (260)
Q Consensus 26 ~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~----~~a~y~v~----------------~~~~alR~vi 84 (260)
|++++.+ +|+|++++++|++.++|+|+++ +.+| +++|.+ ..+.+.+. .++++||+++
T Consensus 3 ~i~~v~~-vdlr~~~ldv~~q~viTkD~v~-v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~vi 80 (143)
T 1win_A 3 SGSSGQR-ISLEIMTLQPRCEDVETAEGVA-LTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 80 (143)
T ss_dssp CCCCCCS-CCCSCEEECCCEEEEECSSSCE-EEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEE-EECceEEEeCCcceeEcCCCCE-EEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 4677775 9999999999999999999999 7889 555544 33333221 4578999999
Q ss_pred ccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHH
Q 024967 85 PKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAAR 144 (260)
Q Consensus 85 ~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~ 144 (260)
|++++++++++|++|+..+.+.+++.+++|||+|.+|+|+||.+|.++++||+.++.||.
T Consensus 81 G~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~ 140 (143)
T 1win_A 81 GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP 140 (143)
T ss_dssp HHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999988776653
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.62 E-value=2.7e-16 Score=120.02 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=87.9
Q ss_pred EeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH--------HhHHHHHHHcccCcHhHHHhhHHHHH
Q 024967 33 SINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL--------VNCSVIRASIPKLNLDDAFEQKNEIA 100 (260)
Q Consensus 33 ~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~--------~~~~alR~vi~~~~l~ei~~~R~~i~ 100 (260)
++|+|.+.++++++.+.|+|++. +.+| .+.| +|.++++++. .+++++|+++|++++++++++|++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~-v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~ 82 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVV-VTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIIN 82 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCE-EEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCE-EEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHH
Confidence 48999999999999999999998 7788 4444 5566677654 67899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEeeeccCcHH
Q 024967 101 KAVEEELEKAMSAYGYEIVQTLIVDIEPDEH 131 (260)
Q Consensus 101 ~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~ 131 (260)
..+++.+++.+++|||+|.+|.|+++.||++
T Consensus 83 ~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 83 ARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=97.39 E-value=0.0042 Score=60.81 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=37.8
Q ss_pred HhHHHHHHHcccCcHhHHHhhHHHHHHH-HH-----H----------HHH--HHhhhcCeEEEEEEeeeccCcH
Q 024967 75 VNCSVIRASIPKLNLDDAFEQKNEIAKA-VE-----E----------ELE--KAMSAYGYEIVQTLIVDIEPDE 130 (260)
Q Consensus 75 ~~~~alR~vi~~~~l~ei~~~R~~i~~~-i~-----~----------~l~--~~~~~~Gi~v~~v~I~~i~~p~ 130 (260)
.+.+.+|..+++.++|+...+-..|-.. +. + ..+ -.+...|+.|.+|.|+++.|-+
T Consensus 574 ~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvD 647 (861)
T 2zuo_A 574 AIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVD 647 (861)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCEEEEEEEEEEEEESS
T ss_pred HHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCeEEEEEeeeeecccC
Confidence 5568899999999999987754444221 10 0 000 1245569999999999998754
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=89.98 E-value=3.1 Score=30.06 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHH
Q 024967 144 RLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIAR 180 (260)
Q Consensus 144 ~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~ 180 (260)
+.-.+++..|..+....+..|++++.++...|+..++
T Consensus 16 ~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 16 KQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666665554444
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=77.59 E-value=2.8 Score=33.46 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 024967 212 VLVTQYFDTMKEIGAASKS 230 (260)
Q Consensus 212 ~~~~~~l~~l~~~~~~~~~ 230 (260)
++.++||++++++++++++
T Consensus 162 ~l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 162 ALQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp HHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3556899999999865443
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=76.35 E-value=5.1 Score=32.01 Aligned_cols=20 Identities=15% Similarity=-0.162 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024967 140 NAAARLRVAANEKAEAEKIL 159 (260)
Q Consensus 140 ~~Ae~~~~a~~~~Ae~~~~a 159 (260)
+..+.+.++..+.+++++++
T Consensus 7 l~~eA~~~a~~I~~eA~~~a 26 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKA 26 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=74.39 E-value=20 Score=26.69 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHH
Q 024967 134 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQR 182 (260)
Q Consensus 134 ~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~ 182 (260)
+-|..-+.||+++...+.+|+.++...+.+|+.+|++.|..=+.+.+..
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~e 58 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888888888888888888888888888776665555543
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=68.36 E-value=22 Score=25.56 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024967 141 AAARLRVAANEKAEAEKILQIKRAEGEA 168 (260)
Q Consensus 141 ~Ae~~~~a~~~~Ae~~~~a~i~~Aegea 168 (260)
.|.++.++.+..||+++.+....|+..+
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777766555444443
No 11
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=63.83 E-value=35 Score=26.94 Aligned_cols=6 Identities=0% Similarity=0.562 Sum_probs=2.6
Q ss_pred HHHHHH
Q 024967 219 DTMKEI 224 (260)
Q Consensus 219 ~~l~~~ 224 (260)
+++..+
T Consensus 109 ea~~~l 114 (187)
T 3v6i_A 109 EALEAL 114 (187)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 344444
No 12
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=60.27 E-value=10 Score=24.29 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024967 141 AAARLRVAAN 150 (260)
Q Consensus 141 ~Ae~~~~a~~ 150 (260)
.||+++...+
T Consensus 23 eAE~~A~~iV 32 (56)
T 2k6i_A 23 LAEEQAVKEI 32 (56)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 13
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=55.85 E-value=51 Score=32.55 Aligned_cols=15 Identities=7% Similarity=-0.294 Sum_probs=9.2
Q ss_pred eeeceecccceeecc
Q 024967 11 MYLSMLLHLFNTVPW 25 (260)
Q Consensus 11 ~~~~~~~PGl~~~~~ 25 (260)
..+-+.+|-+.++.|
T Consensus 477 ~~RvvfGP~lv~L~P 491 (861)
T 2zuo_A 477 RARVVFGPELVTLDP 491 (861)
T ss_dssp CEEEECSSCEEECCS
T ss_pred ceEEEECCcEEEECC
Confidence 355566777766654
No 14
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=53.52 E-value=38 Score=21.10 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=5.5
Q ss_pred HHHhhHHHHHHhhch
Q 024967 162 KRAEGEAESKYLSGL 176 (260)
Q Consensus 162 ~~Aegeae~~~~~Ae 176 (260)
+.+++++++..+.++
T Consensus 26 Il~eA~~eA~~Ii~e 40 (52)
T 2kk7_A 26 IISEAEAEKAKILEK 40 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 15
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=44.48 E-value=84 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHH
Q 024967 147 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAI 185 (260)
Q Consensus 147 ~a~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~ 185 (260)
......||.++...+.+|+..+..++-.|+.+|++.+..
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566676666666666666666666666666655443
No 16
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=41.68 E-value=1.3e+02 Score=24.37 Aligned_cols=8 Identities=13% Similarity=0.339 Sum_probs=3.4
Q ss_pred cHHHHHHH
Q 024967 129 DEHVKRAM 136 (260)
Q Consensus 129 p~~i~~ai 136 (260)
|.++...+
T Consensus 10 ~~~v~~~i 17 (233)
T 4efa_E 10 PNQVNDEL 17 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 17
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=36.56 E-value=25 Score=31.34 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=16.3
Q ss_pred ceec--ccccceeeceeccc-ceeecce
Q 024967 2 FVVK--PRLRTMYLSMLLHL-FNTVPWH 26 (260)
Q Consensus 2 ~~v~--~r~~~~~~~~~~PG-l~~~~~~ 26 (260)
|.|+ |+|+| .+ .++|| +||+.+.
T Consensus 22 ftv~~g~~F~G-IK-~IPpG~~Hfih~s 47 (363)
T 3sbt_B 22 FNVKENQPFHG-IK-DIPIGHVHVIHFQ 47 (363)
T ss_dssp EEECTTCCCCE-EE-EECTTSCEEEEEE
T ss_pred EEcCCCCCCcc-ee-cCCCCCCEEEEEe
Confidence 6774 78886 33 45999 9997554
No 18
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.27 E-value=3.3e+02 Score=25.19 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=28.7
Q ss_pred cCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHH
Q 024967 114 YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAA 149 (260)
Q Consensus 114 ~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~ 149 (260)
-|++-.=|.+.+|-.|.++++..++...++|+-...
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~ 313 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDAT 313 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhc
Confidence 367777788899999999999888887777776543
No 19
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=29.38 E-value=84 Score=19.93 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHHhhhcCeEEEEEEeeeccCcHH
Q 024967 108 EKAMSAYGYEIVQTLIVDIEPDEH 131 (260)
Q Consensus 108 ~~~~~~~Gi~v~~v~I~~i~~p~~ 131 (260)
.+....|.+.|.+|.++|+.+|-.
T Consensus 29 ~~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 29 TEAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHHCCCEEEEEEECC-----
T ss_pred hhccccccceecceeEEeccCCCc
Confidence 345668999999999999999854
Done!