BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024968
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 23/119 (19%)
Query: 119 DLPINDGDKDVCI------LPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMR-FEDGIA 171
D P++ G D+C L + +P DQ+ +N Y+PG+GI H+D FED I
Sbjct: 169 DKPLSGGLPDICESFLEKWLRKGYIKHKP--DQMTINQYEPGQGIPAHIDTHSAFEDEIV 226
Query: 172 IVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEIN 230
+SL S VM F +P + +PV L SL++M+ E+RYLW H I
Sbjct: 227 SLSLGSEIVMDF--------------KHPDGIAVPVMLPRRSLLVMTGESRYLWTHGIT 271
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 119 DLPINDGDKDVCI------LPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMR-FEDGIA 171
D P++ G D+C L + +P DQ +N Y+PG+GI H+D FED I
Sbjct: 169 DKPLSGGLPDICESFLEKWLRKGYIKHKP--DQXTINQYEPGQGIPAHIDTHSAFEDEIV 226
Query: 172 IVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEI 229
+SL S V F +P + +PV L SL++ + E+RYLW H I
Sbjct: 227 SLSLGSEIVXDF--------------KHPDGIAVPVXLPRRSLLVXTGESRYLWTHGI 270
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 19/126 (15%)
Query: 86 TDTSHNQVMRFGDLP-----MWATKLSDSIREEVLLSDDLPI---NDGD-----KDVCIL 132
T+ + Q M+ +P + T+LS + RE V LS D P+ DGD + V +
Sbjct: 15 TENLYFQSMQGSAIPQAMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVN 74
Query: 133 PSDLLWREPLFDQLIVNVYQPG-EGICPHVDL-----MRFEDGIAIVSLESSCVMHFTQV 186
SD+ + +D + + G EGI V L R+ G A+ + +T V
Sbjct: 75 ASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVV 134
Query: 187 KEASAT 192
+ AT
Sbjct: 135 PASIAT 140
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 101 MWATKLSDSIREEVLLSDDLPI---NDGD-----KDVCILPSDLLWREPLFDQLIVNVYQ 152
+ T+LS + RE V LS D P+ DGD + V + SD+ + +D + +
Sbjct: 27 LVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFD 86
Query: 153 PG-EGICPHVDL-----MRFEDGIAIVSLESSCVMHFTQVKEASAT 192
G EGI V L R+ G A+ + +T V + AT
Sbjct: 87 IGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIAT 132
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 101 MWATKLSDSIREEVLLSDDLPI---NDGD-----KDVCILPSDLLWREPLFDQLIVNVYQ 152
+ T+LS + RE V LS D P+ DGD + V + SD+ + +D + +
Sbjct: 6 LVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFD 65
Query: 153 PG-EGICPHVDL-----MRFEDGIAIVSLESSCVMHFTQVKEASAT 192
G EGI V L R+ G A+ + +T V + AT
Sbjct: 66 IGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIAT 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,586,785
Number of Sequences: 62578
Number of extensions: 299352
Number of successful extensions: 613
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 5
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)