Query 024968
Match_columns 260
No_of_seqs 181 out of 1350
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3200 Uncharacterized conser 100.0 1.1E-33 2.4E-38 236.7 12.5 182 54-259 8-217 (224)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 5.4E-33 1.2E-37 237.7 9.1 173 59-254 1-194 (194)
3 PRK15401 alpha-ketoglutarate-d 100.0 2.2E-31 4.9E-36 232.6 13.8 174 54-256 14-213 (213)
4 TIGR00568 alkb DNA alkylation 99.9 8.6E-25 1.9E-29 185.4 10.7 142 64-229 2-169 (169)
5 KOG3959 2-Oxoglutarate- and ir 99.9 3.7E-25 8E-30 193.0 3.5 171 56-258 70-279 (306)
6 COG3145 AlkB Alkylated DNA rep 99.9 1.1E-22 2.4E-27 175.1 11.2 164 55-251 12-194 (194)
7 KOG4176 Uncharacterized conser 99.8 4.8E-21 1E-25 176.4 11.4 173 44-258 113-306 (323)
8 PRK05467 Fe(II)-dependent oxyg 98.4 7.4E-06 1.6E-10 72.8 13.6 159 60-254 2-175 (226)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.2 1.2E-06 2.5E-11 66.9 3.5 84 143-255 1-96 (98)
10 KOG2731 DNA alkylation damage 98.0 2.1E-06 4.6E-11 79.8 2.4 76 143-231 216-293 (378)
11 smart00702 P4Hc Prolyl 4-hydro 98.0 0.00051 1.1E-08 57.9 15.7 157 58-254 1-176 (178)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 97.0 0.00086 1.9E-08 51.0 3.7 84 146-253 1-97 (100)
13 COG3128 PiuC Uncharacterized i 96.6 0.036 7.9E-07 48.0 11.3 157 60-253 4-177 (229)
14 PF12933 FTO_NTD: FTO catalyti 96.4 0.006 1.3E-07 54.5 5.7 90 142-255 137-250 (253)
15 PLN00052 prolyl 4-hydroxylase; 95.1 0.37 8.1E-06 44.9 11.9 36 46-81 42-77 (310)
16 TIGR01762 chlorin-enz chlorina 94.5 1.2 2.7E-05 40.8 13.6 43 203-258 207-249 (288)
17 PF13759 2OG-FeII_Oxy_5: Putat 90.1 1 2.2E-05 34.4 6.0 93 147-253 3-100 (101)
18 PF09859 Oxygenase-NA: Oxygena 82.4 4.4 9.5E-05 34.5 6.2 86 145-253 63-168 (173)
19 KOG1591 Prolyl 4-hydroxylase a 81.0 30 0.00065 32.0 11.7 34 48-81 87-120 (289)
20 PF12851 Tet_JBP: Oxygenase do 79.5 6.1 0.00013 33.5 6.2 88 142-253 75-167 (171)
21 PLN03001 oxidoreductase, 2OG-F 78.4 6.5 0.00014 35.6 6.4 87 145-253 117-209 (262)
22 TIGR02408 ectoine_ThpD ectoine 77.2 36 0.00077 30.8 10.9 25 57-81 27-51 (277)
23 TIGR02466 conserved hypothetic 76.1 16 0.00034 32.0 7.9 97 143-253 95-196 (201)
24 PLN02216 protein SRG1 75.5 11 0.00024 35.6 7.4 88 144-253 210-304 (357)
25 PLN02947 oxidoreductase 74.7 14 0.00031 35.1 8.0 88 144-253 225-318 (374)
26 PLN02904 oxidoreductase 74.7 12 0.00027 35.3 7.5 87 145-253 209-301 (357)
27 KOG0143 Iron/ascorbate family 74.0 16 0.00034 34.2 7.9 67 145-229 177-250 (322)
28 PLN02515 naringenin,2-oxogluta 73.9 15 0.00032 34.9 7.7 86 144-253 195-290 (358)
29 PLN02997 flavonol synthase 70.0 17 0.00038 33.9 7.2 66 145-230 184-256 (325)
30 PLN02984 oxidoreductase, 2OG-F 69.8 21 0.00046 33.6 7.8 85 144-253 200-294 (341)
31 PLN03002 oxidoreductase, 2OG-F 67.3 15 0.00032 34.3 6.2 68 144-226 182-257 (332)
32 PLN02750 oxidoreductase, 2OG-F 66.8 30 0.00065 32.5 8.1 90 144-253 193-288 (345)
33 PLN02704 flavonol synthase 66.6 15 0.00032 34.4 6.0 83 145-253 200-292 (335)
34 PF08007 Cupin_4: Cupin superf 66.6 12 0.00026 34.7 5.4 72 144-219 112-190 (319)
35 PLN02156 gibberellin 2-beta-di 66.5 31 0.00066 32.4 8.1 87 144-253 178-274 (335)
36 PLN02912 oxidoreductase, 2OG-F 66.3 23 0.0005 33.3 7.3 88 144-253 197-290 (348)
37 PLN02365 2-oxoglutarate-depend 63.3 30 0.00066 31.7 7.3 87 144-253 149-245 (300)
38 PLN00417 oxidoreductase, 2OG-F 63.1 26 0.00056 33.0 6.9 85 145-253 204-297 (348)
39 PLN02485 oxidoreductase 61.9 27 0.00058 32.4 6.8 49 202-253 235-283 (329)
40 PLN02639 oxidoreductase, 2OG-F 61.0 17 0.00036 34.1 5.2 84 144-253 190-284 (337)
41 COG3751 EGL-9 Predicted prolin 58.8 29 0.00064 31.5 6.2 91 145-252 137-235 (252)
42 COG5285 Protein involved in bi 58.2 23 0.00049 32.9 5.4 41 202-256 190-230 (299)
43 PLN02254 gibberellin 3-beta-di 58.0 44 0.00095 31.6 7.6 89 144-253 210-304 (358)
44 PTZ00273 oxidase reductase; Pr 57.1 42 0.00091 31.0 7.2 88 144-253 177-271 (320)
45 PLN02393 leucoanthocyanidin di 57.0 38 0.00083 32.0 7.0 87 145-253 214-307 (362)
46 PLN02299 1-aminocyclopropane-1 53.6 32 0.00069 32.0 5.8 86 145-253 159-252 (321)
47 PLN03178 leucoanthocyanidin di 52.0 50 0.0011 31.2 6.9 87 145-253 212-304 (360)
48 PLN02276 gibberellin 20-oxidas 49.2 29 0.00062 32.9 4.8 84 144-253 206-299 (361)
49 KOG2731 DNA alkylation damage 46.8 12 0.00026 35.6 1.8 47 141-188 312-364 (378)
50 PLN02758 oxidoreductase, 2OG-F 44.6 79 0.0017 29.9 7.0 84 145-253 212-306 (361)
51 PLN02403 aminocyclopropanecarb 41.6 80 0.0017 29.1 6.4 86 145-253 154-248 (303)
52 PF05118 Asp_Arg_Hydrox: Aspar 36.9 45 0.00097 27.8 3.6 83 142-258 78-162 (163)
53 PF08943 CsiD: CsiD; InterPro 34.6 34 0.00074 31.4 2.6 30 200-232 250-279 (297)
54 PF10587 EF-1_beta_acid: Eukar 32.4 19 0.00041 21.6 0.4 11 11-21 1-11 (28)
55 KOG4176 Uncharacterized conser 29.9 68 0.0015 30.2 3.9 68 177-254 210-278 (323)
56 PF05721 PhyH: Phytanoyl-CoA d 29.0 68 0.0015 26.1 3.5 24 58-81 4-27 (211)
57 PRK02963 carbon starvation ind 21.4 82 0.0018 29.6 2.8 29 200-231 262-290 (316)
58 PF07491 PPI_Ypi1: Protein pho 20.3 45 0.00098 23.6 0.6 12 11-22 47-58 (60)
59 KOG2107 Uncharacterized conser 20.1 1.9E+02 0.0041 24.8 4.4 42 170-225 95-136 (179)
No 1
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=236.66 Aligned_cols=182 Identities=26% Similarity=0.429 Sum_probs=150.1
Q ss_pred eccCCceEEecCCCCHHHHHHHHHHHHh---CCCCCCCCCCcccccC-----------CCChhHHHHHHHHHHHhhhCCC
Q 024968 54 FEEIGGLCLCRDFLSPEEQSYLLSAIQN---EGWFTDTSHNQVMRFG-----------DLPMWATKLSDSIREEVLLSDD 119 (260)
Q Consensus 54 ~~~ipGL~~ip~fls~~Ee~~Ll~~i~~---~~W~~~~~~r~~~~~G-----------~lP~~~~~l~~~~~~~~~~gd~ 119 (260)
+..-|-..|||||||++||+.+++.|.. ..|.... +||.+.|| .+|.|++.+.+++.....|+.
T Consensus 8 V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~-NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnlglF~s- 85 (224)
T KOG3200|consen 8 VKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA-NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNLGLFKS- 85 (224)
T ss_pred ecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH-hhhhhhcCCccccCCcCccccCHHHHHHHHHhhcccccCC-
Confidence 4445678999999999999999999998 4687765 66788888 389999999888876655431
Q ss_pred CCCCCCCCCccCCCccccccCCCCCeEEEeeeCCCCCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCC-cC
Q 024968 120 LPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGR-ID 198 (260)
Q Consensus 120 ~~~~~~~~~~~~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~-~~ 198 (260)
..||+|||+|.||+||+||.|++.|.++|++|||||.|+|+|......+.++... ..
T Consensus 86 ----------------------~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~d 143 (224)
T KOG3200|consen 86 ----------------------PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKD 143 (224)
T ss_pred ----------------------CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCC
Confidence 4699999999999999999999999999999999999999999866554443321 22
Q ss_pred CCCCceEEEEcCCCcEEEeccccccceeecccccCC-------------ccccccceecCCceEEEEccccccC
Q 024968 199 NPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQG-------------FQMWEGEVLNQKKRTSITMRKLCHV 259 (260)
Q Consensus 199 ~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~-------------~~~~~g~~~~~~~RiSLTfR~v~~~ 259 (260)
......+.+.|+++||+|+.++|+.++.|||..... .+...|..+.+++|||||+|.|.+|
T Consensus 144 qp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~VPkv 217 (224)
T KOG3200|consen 144 QPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLVPKV 217 (224)
T ss_pred CCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecchHH
Confidence 356778899999999999999999999999986542 1234677788899999999999765
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.98 E-value=5.4e-33 Score=237.73 Aligned_cols=173 Identities=29% Similarity=0.317 Sum_probs=104.9
Q ss_pred ceEEecCCCCHHHHHHHHHHHHh-CCCCCCCCCCcccccCCCChhHHHHHHHHHHHhhhC--CCCCCCCC----CCCccC
Q 024968 59 GLCLCRDFLSPEEQSYLLSAIQN-EGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLS--DDLPINDG----DKDVCI 131 (260)
Q Consensus 59 GL~~ip~fls~~Ee~~Ll~~i~~-~~W~~~~~~r~~~~~G~lP~~~~~l~~~~~~~~~~g--d~~~~~~~----~~~~~~ 131 (260)
|++|++||||++|++.|++.|.+ ..|.... ......+.....++ ....+.+ ..|.|++. .....+
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~y~y~~~~~~~~~~~~~ 72 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPT-YPMGKVYSLPRKLC-------GGLSWVGDGPSYRYSGKRPVRSKPWPP 72 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GC-CCCCCECCECCE-S-------SEEEEEECT--CCCTCC-EECCCEBSC
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCe-EcCCCEEccceecc-------eeeEEECCCCCeEcCCccccCCCCCCC
Confidence 89999999999999999999996 3443321 11111111000000 0011222 23445443 122334
Q ss_pred CCcccc------------ccCCCCCeEEEeeeCCCCCCCCCCCCC--CCCCcEEEEecCCceeEEEeecccccccCCCCc
Q 024968 132 LPSDLL------------WREPLFDQLIVNVYQPGEGICPHVDLM--RFEDGIAIVSLESSCVMHFTQVKEASATGEGRI 197 (260)
Q Consensus 132 lp~~ll------------~~~~~~n~~lvN~Y~pG~gI~~H~D~~--~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~ 197 (260)
+|+.+. .....||+||||+|.+|++|++|+|.. .++++||+||||++|+|.|+....
T Consensus 73 ~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~--------- 143 (194)
T PF13532_consen 73 FPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD--------- 143 (194)
T ss_dssp CHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG---------
T ss_pred ccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccC---------
Confidence 443221 124579999999999999999999997 379999999999999999997653
Q ss_pred CCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcc
Q 024968 198 DNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMR 254 (260)
Q Consensus 198 ~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR 254 (260)
....+.|.|++||||||+|++|+.| |+|++.+.. ..+..+.++.|||||||
T Consensus 144 ---~~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~--~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 144 ---DDEPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKD--THPSHYVRGRRISLTFR 194 (194)
T ss_dssp ---TS-EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCE--EEESTEE-S-EEEEEEE
T ss_pred ---CCccEEEEcCCCCEEEeChHHhhhe-eEcccccCC--ccccccCCCCEEEEEeC
Confidence 3579999999999999999999999 999998642 11111468899999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.97 E-value=2.2e-31 Score=232.59 Aligned_cols=174 Identities=23% Similarity=0.243 Sum_probs=128.3
Q ss_pred eccCCceEEecCCCCHHHHHHHHHHHHh----CCCCCCCCCCcccccCCCChhHHHHHHHHH---HHhhhCCC--CCCCC
Q 024968 54 FEEIGGLCLCRDFLSPEEQSYLLSAIQN----EGWFTDTSHNQVMRFGDLPMWATKLSDSIR---EEVLLSDD--LPIND 124 (260)
Q Consensus 54 ~~~ipGL~~ip~fls~~Ee~~Ll~~i~~----~~W~~~~~~r~~~~~G~lP~~~~~l~~~~~---~~~~~gd~--~~~~~ 124 (260)
....+|..++++|. .++++.|++.|.+ .+|.+ .+.+|..+ .+.++. .+.|++|. |.|++
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~------~~~~gg~~-----msv~mt~~G~~~W~~d~~~YrYs~ 81 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRH------MVTPGGYT-----MSVAMTNCGALGWVTDRRGYRYSP 81 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccc------eecCCCCc-----ceeEEeccccceEecCCCCcccCC
Confidence 33578999999995 9999999999987 34543 34455322 111222 12577665 78886
Q ss_pred CC-CCccCCCc---cccc-----------cCCCCCeEEEeeeCCCCCCCCCCCCC--CCCCcEEEEecCCceeEEEeecc
Q 024968 125 GD-KDVCILPS---DLLW-----------REPLFDQLIVNVYQPGEGICPHVDLM--RFEDGIAIVSLESSCVMHFTQVK 187 (260)
Q Consensus 125 ~~-~~~~~lp~---~ll~-----------~~~~~n~~lvN~Y~pG~gI~~H~D~~--~~~~~Ia~lSLGs~~vm~f~~~~ 187 (260)
.+ ....+||+ .|.. ....||+||||+|++|++|+||.|.. .++++|||||||++|+|.|++..
T Consensus 82 ~~~~~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~ 161 (213)
T PRK15401 82 IDPLTGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLK 161 (213)
T ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccC
Confidence 64 34445554 4421 13378999999999999999999974 57899999999999999998754
Q ss_pred cccccCCCCcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccc
Q 024968 188 EASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKL 256 (260)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v 256 (260)
. ...+.+|.|++||||||+|++|+.| |+|++.+.. -.++.+..|||||||++
T Consensus 162 ~------------~~~~~~l~L~~Gdllvm~G~sr~~~-HgVp~~~~~----~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 162 R------------SDPLQRILLEHGDVVVWGGPSRLRY-HGILPLKAG----EHPLTGECRINLTFRKA 213 (213)
T ss_pred C------------CCceEEEEeCCCCEEEECchHhhee-ccCCcCCCC----cCCCCCCCeEEEEeEcC
Confidence 3 2457899999999999999999866 999988631 11234568999999985
No 4
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.92 E-value=8.6e-25 Score=185.44 Aligned_cols=142 Identities=21% Similarity=0.254 Sum_probs=107.3
Q ss_pred cCCCCHHHHHHHHHHHHh----CCCCCCCCCCcccccCC---CChhHHHHHHHHHHHhhhC--CCCCCCCCCC----Ccc
Q 024968 64 RDFLSPEEQSYLLSAIQN----EGWFTDTSHNQVMRFGD---LPMWATKLSDSIREEVLLS--DDLPINDGDK----DVC 130 (260)
Q Consensus 64 p~fls~~Ee~~Ll~~i~~----~~W~~~~~~r~~~~~G~---lP~~~~~l~~~~~~~~~~g--d~~~~~~~~~----~~~ 130 (260)
.+|+...++..|++++.. ..|.+. ...||+ +|... .....|++ ..|+|++... +.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~~-----~~~~gk~~~~pr~~------~~~l~W~~~g~~Y~ys~~~~~~~~~~p 70 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQY-----VTPGGYTMSVAMTN------LGKLGWTTHGQGYLYSPKDPQTNKPWP 70 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcCe-----EecCCeEeeehhhh------cccceEEcCCCcccCCCcccCCCCCCC
Confidence 578999999999998887 356542 456774 23210 01124664 4588888754 223
Q ss_pred CCCccccc--------c---CCCCCeEEEeeeCCCCCCCCCCCCC--CCCCcEEEEecCCceeEEEeecccccccCCCCc
Q 024968 131 ILPSDLLW--------R---EPLFDQLIVNVYQPGEGICPHVDLM--RFEDGIAIVSLESSCVMHFTQVKEASATGEGRI 197 (260)
Q Consensus 131 ~lp~~ll~--------~---~~~~n~~lvN~Y~pG~gI~~H~D~~--~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~ 197 (260)
+||+.|.. . ...||+||||+|++|++|+||+|.. .++++|||||||++|+|.|+++..
T Consensus 71 ~~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~--------- 141 (169)
T TIGR00568 71 AMPQDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKR--------- 141 (169)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcC---------
Confidence 47776531 1 2379999999999999999999985 467899999999999999987643
Q ss_pred CCCCCceEEEEcCCCcEEEeccccccceeecc
Q 024968 198 DNPHAVKIPVYLTPGSLVIMSREARYLWKHEI 229 (260)
Q Consensus 198 ~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I 229 (260)
...+.+|.|++||||||+|++|+.| |||
T Consensus 142 ---~~~~~~l~L~sGsllvM~G~sR~~~-Hgv 169 (169)
T TIGR00568 142 ---NDPPKRLRLHSGDVVIMGGESRLAF-HGV 169 (169)
T ss_pred ---CCceEEEEeCCCCEEEECCchhccc-cCC
Confidence 2457899999999999999999988 997
No 5
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.90 E-value=3.7e-25 Score=193.01 Aligned_cols=171 Identities=26% Similarity=0.405 Sum_probs=134.1
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHHhCCCCCCCCCCcccccCC----------------CChhHHHHHHHHHHHhhhCCC
Q 024968 56 EIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGD----------------LPMWATKLSDSIREEVLLSDD 119 (260)
Q Consensus 56 ~ipGL~~ip~fls~~Ee~~Ll~~i~~~~W~~~~~~r~~~~~G~----------------lP~~~~~l~~~~~~~~~~gd~ 119 (260)
.+||+.+|.||||++|+++|++.|+..+|...+++||.|.||| +|++...+.+|+....
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P~~~~~v~rrm~~yp----- 144 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMPEYADMVLRRMSEYP----- 144 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCCchHHHHHHHHhhccc-----
Confidence 5899999999999999999999999999999999999999996 5655544444442211
Q ss_pred CCCCCCCCCccCCCccccccCCCCCeEEEeeeCC--CCCCCCCCCCC-CCCCcEEEEecCCceeEEEeecccccc-----
Q 024968 120 LPINDGDKDVCILPSDLLWREPLFDQLIVNVYQP--GEGICPHVDLM-RFEDGIAIVSLESSCVMHFTQVKEASA----- 191 (260)
Q Consensus 120 ~~~~~~~~~~~~lp~~ll~~~~~~n~~lvN~Y~p--G~gI~~H~D~~-~~~~~Ia~lSLGs~~vm~f~~~~~~~~----- 191 (260)
.-.. -.++.||- .+|.| |..|.||.|+. .||+.++++.+.++.++.+.++.-...
T Consensus 145 ------------~l~g----fqp~EqCn-LeYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~~sg~~nL 207 (306)
T KOG3959|consen 145 ------------VLKG----FQPFEQCN-LEYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECLASGIINL 207 (306)
T ss_pred ------------hhhc----cCcHHHcC-cccccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhhccceeee
Confidence 1111 12578884 68998 55799999995 999999999999998888875532211
Q ss_pred ------cCC--------C-CcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccc
Q 024968 192 ------TGE--------G-RIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKL 256 (260)
Q Consensus 192 ------~~~--------~-~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v 256 (260)
.++ + .........+.|+||++||+||.|+|||.|+|+|.+++ .+++||.+|||..
T Consensus 208 ~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~h----------i~~RRvcvt~RE~ 277 (306)
T KOG3959|consen 208 NTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHH----------IRGRRVCVTMREA 277 (306)
T ss_pred ccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHh----------hhhceeeeeHHhh
Confidence 111 0 12235677889999999999999999999999999986 5899999999987
Q ss_pred cc
Q 024968 257 CH 258 (260)
Q Consensus 257 ~~ 258 (260)
.+
T Consensus 278 ~~ 279 (306)
T KOG3959|consen 278 AK 279 (306)
T ss_pred hH
Confidence 65
No 6
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.1e-22 Score=175.06 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=114.2
Q ss_pred ccCCceEEecCCCCHHHHHHHHHHHHh----CCCCCCCCCCcccccCCCChhHHHHHHHHHHHhhhCCC--CCCCCCCC-
Q 024968 55 EEIGGLCLCRDFLSPEEQSYLLSAIQN----EGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDD--LPINDGDK- 127 (260)
Q Consensus 55 ~~ipGL~~ip~fls~~Ee~~Ll~~i~~----~~W~~~~~~r~~~~~G~lP~~~~~l~~~~~~~~~~gd~--~~~~~~~~- 127 (260)
...+|+.+.++|+ -.++..+++.|.. .+|+.. ....||+-=+ +.+ ...|.++. |.|+....
T Consensus 12 ~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~----~~~~~g~~~s-----V~r--~~~W~~d~~gy~y~~~~p~ 79 (194)
T COG3145 12 QLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRP----RRTPYGKPMS-----VPR--LLGWVTDRRGYRYSLRSPL 79 (194)
T ss_pred cCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccce----eecCCCcEee-----eee--ccceecccccccccccccC
Confidence 4578999999999 5555566555544 477643 2344553110 011 23444442 55555443
Q ss_pred CccCCCcccc----------ccCCCCCeEEEeeeCCCCCCCCCCCCCCCC--CcEEEEecCCceeEEEeecccccccCCC
Q 024968 128 DVCILPSDLL----------WREPLFDQLIVNVYQPGEGICPHVDLMRFE--DGIAIVSLESSCVMHFTQVKEASATGEG 195 (260)
Q Consensus 128 ~~~~lp~~ll----------~~~~~~n~~lvN~Y~pG~gI~~H~D~~~~~--~~Ia~lSLGs~~vm~f~~~~~~~~~~~~ 195 (260)
+..++|..+. .....|++||||+|+||++|+||.|...++ +.|||||||++|+|.|++...
T Consensus 80 ~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r------- 152 (194)
T COG3145 80 TGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR------- 152 (194)
T ss_pred CCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC-------
Confidence 2233443210 123457889999999999999999996433 579999999999999998874
Q ss_pred CcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEE
Q 024968 196 RIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSI 251 (260)
Q Consensus 196 ~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSL 251 (260)
.++..++.|.|||+|||.|.+|+.|.|.||++.. ....||||
T Consensus 153 -----~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~---------~~~~Rinl 194 (194)
T COG3145 153 -----RGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSR---------LTGQRINL 194 (194)
T ss_pred -----CCCceeEEecCCCEEEecCCcccccccccccccc---------CCcccccC
Confidence 3678999999999999999999999999998763 23477775
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=4.8e-21 Score=176.43 Aligned_cols=173 Identities=29% Similarity=0.433 Sum_probs=123.7
Q ss_pred CcCCCCceeeeccCCc-eEEecCCCCHHHHHHHHHHHHhCCCCC---CCCCCcccccC-----------------CCChh
Q 024968 44 NVSQKSSWQRFEEIGG-LCLCRDFLSPEEQSYLLSAIQNEGWFT---DTSHNQVMRFG-----------------DLPMW 102 (260)
Q Consensus 44 ~~~~~~~~~~~~~ipG-L~~ip~fls~~Ee~~Ll~~i~~~~W~~---~~~~r~~~~~G-----------------~lP~~ 102 (260)
|.-+.+..+.....|| +.++++|+++.+++.+...+....|.. .. +|++.+|| ++|+.
T Consensus 113 n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~~~~gk-~R~~iq~G~~f~y~~~~~d~~~~~~piPs~ 191 (323)
T KOG4176|consen 113 NVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTYQESGK-HREVIQLGYPFDYRTNNVDESKPVDPIPSL 191 (323)
T ss_pred hhhhhheeeccccChhhceehhhhhhhhHHhhhhcccccccceeecccc-ceeeeecCceeccCCCcccccCccCCCchH
Confidence 4556667777777888 999999999999999999998877766 32 55566665 24544
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCCccCCCccccccCCCCCeEEEeeeCCCCCCCCCCCCCCCCCcEEEEecCCceeEE
Q 024968 103 ATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMH 182 (260)
Q Consensus 103 ~~~l~~~~~~~~~~gd~~~~~~~~~~~~~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~~~~~~Ia~lSLGs~~vm~ 182 (260)
+..+.+|+-.+. .+|+ .||||+||.|.||++|.||+|++.|+++|++|||.|+|+|.
T Consensus 192 ~~~ii~rlv~~~----------------~ip~-------~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~ 248 (323)
T KOG4176|consen 192 FKSIIDRLVSWR----------------VIPE-------RPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTME 248 (323)
T ss_pred HHHHHHHhhhhc----------------cCCC-------CCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEE
Confidence 444444332221 1222 58999999999999999999888999999999999999999
Q ss_pred EeecccccccCCCCcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccccc
Q 024968 183 FTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCH 258 (260)
Q Consensus 183 f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v~~ 258 (260)
|++......... ......+.++.||+++|.|.+.-.-+|++.. .+..|||||||++++
T Consensus 249 Fg~~~~~~~~~~------~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~------------~~~kRisitfrki~~ 306 (323)
T KOG4176|consen 249 FGHGLLSDNIGN------FRGSLSLPLRYGSVLVIRGRSADVAPHCIRP------------SRNKRISITFRKIRP 306 (323)
T ss_pred ecccccccCccc------cccccccccccCeEEEeCCCcccccccccCC------------CCCceEEEEEEEecc
Confidence 998865221111 1224455555555555555555555555554 478999999999976
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.40 E-value=7.4e-06 Score=72.78 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=86.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHhCCCCCCCC---------CCcccccCCCChhHHHHHHHHHHHhhhCCCCCCCCCCCCcc
Q 024968 60 LCLCRDFLSPEEQSYLLSAIQNEGWFTDTS---------HNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVC 130 (260)
Q Consensus 60 L~~ip~fls~~Ee~~Ll~~i~~~~W~~~~~---------~r~~~~~G~lP~~~~~l~~~~~~~~~~gd~~~~~~~~~~~~ 130 (260)
++.||++||++|++.+.+.+.+.+|..... +|..+.-..-| ....+.+++.... .. +.. ....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L--~~----~~l-~~sa 73 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDAL--TR----NPL-FFSA 73 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHH--hc----Cch-hhhh
Confidence 578999999999999999999988974321 11111111222 3334444443321 10 000 0011
Q ss_pred CCCccccccCCCCCeEEEeeeCCCCCCCCCCCCC-CC--C--CcEEE-EecCCceeEEEeecccccccCCCCcCCCCCce
Q 024968 131 ILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLM-RF--E--DGIAI-VSLESSCVMHFTQVKEASATGEGRIDNPHAVK 204 (260)
Q Consensus 131 ~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~-~~--~--~~Ia~-lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~ 204 (260)
.+|..+ ....+|.|.+|+..++|+|.. .. + ..+-+ +| +++-+..... -..+.... ......
T Consensus 74 ~lp~~i-------~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS----~~lyLnd~~~-yeGGEl~~-~~~~g~ 140 (226)
T PRK05467 74 ALPRKI-------HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLS----ATLFLSDPDD-YDGGELVI-EDTYGE 140 (226)
T ss_pred cccccc-------ccceEEEECCCCccCccccCCcccCCCCCcceeEEEE----EEEEeCCCCC-CcCCceEE-ecCCCc
Confidence 223211 245689999999999999996 21 1 11110 10 1111111110 00000000 011234
Q ss_pred EEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcc
Q 024968 205 IPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMR 254 (260)
Q Consensus 205 ~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR 254 (260)
..|.++.|+++++... -.|++.+. .++.|+++|+-
T Consensus 141 ~~Vkp~aG~~vlfps~----~lH~v~pV-----------t~G~R~~~~~W 175 (226)
T PRK05467 141 HRVKLPAGDLVLYPST----SLHRVTPV-----------TRGVRVASFFW 175 (226)
T ss_pred EEEecCCCeEEEECCC----Cceeeeec-----------cCccEEEEEec
Confidence 6899999999999864 34988875 47899999874
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.21 E-value=1.2e-06 Score=66.92 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCeEEEeeeC---CCCCCCCCCCCCCCCCcEEEEecC-CceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEec
Q 024968 143 FDQLIVNVYQ---PGEGICPHVDLMRFEDGIAIVSLE-SSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMS 218 (260)
Q Consensus 143 ~n~~lvN~Y~---pG~gI~~H~D~~~~~~~Ia~lSLG-s~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~ 218 (260)
++++.+|+|. .+.++++|.|.. +.+++|.+. ....+.|.... ..+.+...++.++|+.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~---------------~~~~v~~~~~~~~v~~ 62 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDG---------------EWVDVPPPPGGFIVNF 62 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETT---------------EEEE----TTCEEEEE
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccc---------------cccCccCccceeeeec
Confidence 3789999999 566999999995 335555554 67777776553 3555666666666666
Q ss_pred cc--------cccceeecccccCCccccccceecCCceEEEEccc
Q 024968 219 RE--------ARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRK 255 (260)
Q Consensus 219 G~--------aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~ 255 (260)
|+ .+..+.|+|.... .+.|+|+||+.
T Consensus 63 G~~l~~~t~g~~~~~~HrV~~~~-----------~~~R~s~~~f~ 96 (98)
T PF03171_consen 63 GDALEILTNGRYPATLHRVVPPT-----------EGERYSLTFFL 96 (98)
T ss_dssp BHHHHHHTTTSS----EEEE--S-----------TS-EEEEEEEE
T ss_pred eeeeecccCCccCCceeeeEcCC-----------CCCEEEEEEEE
Confidence 66 7888999999763 68999999973
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=98.05 E-value=2.1e-06 Score=79.82 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=66.2
Q ss_pred CCeEEEeeeCCCCCCCCCCCCC--CCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEeccc
Q 024968 143 FDQLIVNVYQPGEGICPHVDLM--RFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSRE 220 (260)
Q Consensus 143 ~n~~lvN~Y~pG~gI~~H~D~~--~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~ 220 (260)
+..+|+|+|.+++.++.|.|.. ....++.+.|||..|++.+.-... ......++|..|++++|.|.
T Consensus 216 ~~Gli~nYlsi~~tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l------------~e~p~p~~lrsGdv~im~Gf 283 (378)
T KOG2731|consen 216 RPGLIKNYLSIDDTLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCL------------GENPDPMTLRSGDVVIMDGF 283 (378)
T ss_pred cCcceeeecccCcEEEEEeehhhcccCCccccccccccceeeeccccc------------CCCCCccccccCceEeecch
Confidence 4558999999999999999996 567789999999999999976653 24577799999999999999
Q ss_pred cccceeecccc
Q 024968 221 ARYLWKHEINR 231 (260)
Q Consensus 221 aR~~w~H~I~~ 231 (260)
+|..+ |||+.
T Consensus 284 srlv~-haIp~ 293 (378)
T KOG2731|consen 284 SRLVE-HAIPE 293 (378)
T ss_pred HHHHh-hccch
Confidence 99998 99993
No 11
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.98 E-value=0.00051 Score=57.92 Aligned_cols=157 Identities=24% Similarity=0.273 Sum_probs=85.6
Q ss_pred CceEEecCCCCHHHHHHHHHHHHhCCCCCCCCCC----------cccc--c-CCC--ChhHHHHHHHHHHHhhhCCCCCC
Q 024968 58 GGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHN----------QVMR--F-GDL--PMWATKLSDSIREEVLLSDDLPI 122 (260)
Q Consensus 58 pGL~~ip~fls~~Ee~~Ll~~i~~~~W~~~~~~r----------~~~~--~-G~l--P~~~~~l~~~~~~~~~~gd~~~~ 122 (260)
|++++++||||++|++.|++......|......+ |... + ... ......+..+++.. ++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~--~~----- 73 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADF--LG----- 73 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHH--HC-----
Confidence 6899999999999999999999886663211000 0000 0 000 22223334444333 21
Q ss_pred CCCCCCccCCCccccccCCCCCeEEEeeeCCCCCCCCCCCCCCC---CCcEEEEecCCceeEEEeecccccccCCCC-cC
Q 024968 123 NDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRF---EDGIAIVSLESSCVMHFTQVKEASATGEGR-ID 198 (260)
Q Consensus 123 ~~~~~~~~~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~~~---~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~-~~ 198 (260)
++..+ ......+.++.|.+|+...+|.|.... +..++++-+ -+... ...+... ..
T Consensus 74 ---------~~~~~---~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~------yLn~~---~~GG~~~f~~ 132 (178)
T smart00702 74 ---------LLRGL---PLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLL------YLNDV---EEGGELVFPG 132 (178)
T ss_pred ---------CCchh---hccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEE------EeccC---CcCceEEecC
Confidence 11000 012367889999999999999999522 122332211 11110 0000000 00
Q ss_pred CCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcc
Q 024968 199 NPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMR 254 (260)
Q Consensus 199 ~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR 254 (260)
........|.-..|+++++...-...| |++.+.. .+.|+++|..
T Consensus 133 ~~~~~~~~v~P~~G~~v~f~~~~~~~~-H~v~pv~-----------~G~r~~~~~W 176 (178)
T smart00702 133 LGLMVCATVKPKKGDLLFFPSGRGRSL-HGVCPVT-----------RGSRWAITGW 176 (178)
T ss_pred CCCccceEEeCCCCcEEEEeCCCCCcc-ccCCcce-----------eCCEEEEEEE
Confidence 011235578889999999875422334 9988763 5789988863
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.97 E-value=0.00086 Score=51.03 Aligned_cols=84 Identities=25% Similarity=0.302 Sum_probs=50.2
Q ss_pred EEEeeeCCCCCCCCCCCCCCCCCcEEEE--ecCC------ceeEEEeecccccccCCCCcCCCCCceEEEE-----cCCC
Q 024968 146 LIVNVYQPGEGICPHVDLMRFEDGIAIV--SLES------SCVMHFTQVKEASATGEGRIDNPHAVKIPVY-----LTPG 212 (260)
Q Consensus 146 ~lvN~Y~pG~gI~~H~D~~~~~~~Ia~l--SLGs------~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~-----L~~g 212 (260)
|-+|.|.+|..+.||.|.......++++ -|.. .-.+.|.+.. . .......+. ..+|
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~----------~~~~~~~~~~~~~~p~~g 69 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK-D----------SDDVSREVEDFDIVPKPG 69 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS------------TSSTCEEEGGGSEE-BTT
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc-c----------CCCcceEEEeccccCCCC
Confidence 4579999999999999995322222222 2331 1344444322 0 012233333 8899
Q ss_pred cEEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 213 SLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 213 SLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+++++.+ ...| |++.+.. ..++|++||+
T Consensus 70 ~~v~F~~--~~~~-H~v~~v~----------~~~~R~~l~~ 97 (100)
T PF13640_consen 70 RLVIFPS--DNSL-HGVTPVG----------EGGRRYSLTF 97 (100)
T ss_dssp EEEEEES--CTCE-EEEEEE-----------EESEEEEEEE
T ss_pred EEEEEeC--CCCe-ecCcccC----------CCCCEEEEEE
Confidence 9999999 4444 9999872 4789999986
No 13
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.61 E-value=0.036 Score=47.97 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=84.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHhCCCCCCCCC-----CcccccCCCCh---hHHHHHHHHHHHh-----hhCCCCCCCCCC
Q 024968 60 LCLCRDFLSPEEQSYLLSAIQNEGWFTDTSH-----NQVMRFGDLPM---WATKLSDSIREEV-----LLSDDLPINDGD 126 (260)
Q Consensus 60 L~~ip~fls~~Ee~~Ll~~i~~~~W~~~~~~-----r~~~~~G~lP~---~~~~l~~~~~~~~-----~~gd~~~~~~~~ 126 (260)
+.-||..||+++...+=+.+.+-.|...... -++.+--.+|. ....+.+.+.+.. +|+-
T Consensus 4 ~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g~q~a~vk~n~qlp~~s~l~~~vg~~il~al~~~plff~a-------- 75 (229)
T COG3128 4 MLHIPEVLSEAQVARIRAALEQAEWVDGRATQGPQGAQVKNNLQLPQDSALARELGNEILQALTAHPLFFAA-------- 75 (229)
T ss_pred EEechhhCCHHHHHHHHHHHhhccccccccccCcchhhhhccccCCcccHHHHHHHHHHHHHHHhchhHHHh--------
Confidence 5678999999999999999988899764210 01111111232 1111222221111 2221
Q ss_pred CCccCCCccccccCCCCCeEEEeeeCCCCCCCCCCCCC-CC-CCcEE-EEecCCceeEEEeecccccccCCCCc-CCCCC
Q 024968 127 KDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLM-RF-EDGIA-IVSLESSCVMHFTQVKEASATGEGRI-DNPHA 202 (260)
Q Consensus 127 ~~~~~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~-~~-~~~Ia-~lSLGs~~vm~f~~~~~~~~~~~~~~-~~~~~ 202 (260)
.+|-.++ -=+-|.|+.|.+.++|+|+. .. .+.-- .++--=+|.+.+..... -+.++- ....-
T Consensus 76 ----ALp~t~~-------~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPed---YdGGeLVv~dtY 141 (229)
T COG3128 76 ----ALPRTCL-------PPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPED---YDGGELVVNDTY 141 (229)
T ss_pred ----hcccccC-------CchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccc---cCCceEEEeccc
Confidence 2221111 11248999999999999994 22 22100 22222233333332211 111110 01122
Q ss_pred ceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 203 VKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 203 ~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
....|.||.|||++..+.+ .|.|.+. .|+.|+-.-|
T Consensus 142 g~h~VklPAGdLVlypStS----lH~VtPV-----------TRg~R~asff 177 (229)
T COG3128 142 GNHRVKLPAGDLVLYPSTS----LHEVTPV-----------TRGERFASFF 177 (229)
T ss_pred cceEEeccCCCEEEccccc----ceecccc-----------ccCceEEEee
Confidence 3788999999999998877 4888876 5788887665
No 14
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.45 E-value=0.006 Score=54.53 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCCeEEEeeeCC----------------CC-CCCCCCCCC-CCCCcEEEEecCCc----ee--EEEeecccccccCCCCc
Q 024968 142 LFDQLIVNVYQP----------------GE-GICPHVDLM-RFEDGIAIVSLESS----CV--MHFTQVKEASATGEGRI 197 (260)
Q Consensus 142 ~~n~~lvN~Y~p----------------G~-gI~~H~D~~-~~~~~Ia~lSLGs~----~v--m~f~~~~~~~~~~~~~~ 197 (260)
.||-.|||++.| |. .++||.|.. .-..+||.-|--.. .. .-|+ .-
T Consensus 137 ~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s~~~~~~~~W~VgLk-a~---------- 205 (253)
T PF12933_consen 137 EFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYSCEEPEPADWHVGLK-AW---------- 205 (253)
T ss_dssp ---EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE-----TTSEEEEEE-TT----------
T ss_pred eeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEecCCCCCCCceEEEEe-ec----------
Confidence 589999999999 22 478898885 33445665544332 01 1111 11
Q ss_pred CCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEccc
Q 024968 198 DNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRK 255 (260)
Q Consensus 198 ~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~ 255 (260)
....+.+.|+|+.|+.|.|-++.....+|+|-.- ...|+|=|-|-
T Consensus 206 -D~~tP~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG------------~~~RfSSTHRV 250 (253)
T PF12933_consen 206 -DIETPGLAVPLRSGDCYYMLDDFNATHQHCVLAG------------SSARFSSTHRV 250 (253)
T ss_dssp ---SS-EEEEEE-TT-EEEE-TTHHHHEEEEEE--------------SS-EEEEEEE-
T ss_pred -CCCCCeeEEeccCCCeEEEccccchhhHHHHhcC------------CCcccccccee
Confidence 1235789999999999999999999999999864 35799999874
No 15
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=95.08 E-value=0.37 Score=44.89 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=31.2
Q ss_pred CCCCceeeeccCCceEEecCCCCHHHHHHHHHHHHh
Q 024968 46 SQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQN 81 (260)
Q Consensus 46 ~~~~~~~~~~~ipGL~~ip~fls~~Ee~~Ll~~i~~ 81 (260)
.+..+.+.++.-|-+++++||||++|++.|++....
T Consensus 42 ~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~ 77 (310)
T PLN00052 42 FNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKK 77 (310)
T ss_pred cCCceEEEecCCCCEEEECCcCCHHHHHHHHHhccc
Confidence 456688888888999999999999999999987754
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=94.45 E-value=1.2 Score=40.84 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=33.1
Q ss_pred ceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccccc
Q 024968 203 VKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCH 258 (260)
Q Consensus 203 ~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v~~ 258 (260)
..+.+.|++|++++|.+-+ | |+=.+... .+.+|+++++|.+..
T Consensus 207 ~~v~~~lkaGd~~~f~~~t---~-HgS~~N~S---------~~~~R~~~~~ry~~~ 249 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWSTL---M-HASYPNSG---------ESQMRMGFASRYVPS 249 (288)
T ss_pred ceeeeeeCCceEEEECCCc---e-ecCCCCCC---------CCceEEEEEEEEcCC
Confidence 4688999999999999865 3 88766542 246799999998743
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=90.09 E-value=1 Score=34.45 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=46.6
Q ss_pred EEeeeCCCCCCCCCCCCCCCCCcEEEEecCCce-eEEEeecccccccCCC----CcCCCCCceEEEEcCCCcEEEecccc
Q 024968 147 IVNVYQPGEGICPHVDLMRFEDGIAIVSLESSC-VMHFTQVKEASATGEG----RIDNPHAVKIPVYLTPGSLVIMSREA 221 (260)
Q Consensus 147 lvN~Y~pG~gI~~H~D~~~~~~~Ia~lSLGs~~-vm~f~~~~~~~~~~~~----~~~~~~~~~~~v~L~~gSLlvm~G~a 221 (260)
=+|.|++|+...+|.-...+-..|.-|.+.... .+.|............ .........+.+..+.|+|+|+-+-.
T Consensus 3 W~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l 82 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWL 82 (101)
T ss_dssp EEEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTS
T ss_pred eEEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCC
Confidence 368899998888887764443456666666544 3566544322111100 11223456778899999999999755
Q ss_pred ccceeecccccCCccccccceecCCceEEEEc
Q 024968 222 RYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 222 R~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
. |++.+.. ..+.||||-|
T Consensus 83 ~----H~v~p~~----------~~~~Risisf 100 (101)
T PF13759_consen 83 W----HGVPPNN----------SDEERISISF 100 (101)
T ss_dssp E----EEE--------------SSS-EEEEEE
T ss_pred E----EeccCcC----------CCCCEEEEEc
Confidence 4 9999875 3579999976
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=82.42 E-value=4.4 Score=34.52 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred eEEEeeeCCCCCCCCCCCCC--CCCC--cEEEEec------CCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcE
Q 024968 145 QLIVNVYQPGEGICPHVDLM--RFED--GIAIVSL------ESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSL 214 (260)
Q Consensus 145 ~~lvN~Y~pG~gI~~H~D~~--~~~~--~Ia~lSL------Gs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSL 214 (260)
..|+..|.+|+..+.|.|.- .+-| .|+.||= |.. |.+..... .......-+.|+.|+.
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGE--FVltEQrP----------R~QSR~~V~~L~qGda 130 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGE--FVLTEQRP----------RMQSRAMVLPLRQGDA 130 (173)
T ss_pred chhhheeCCCCccccccCCCCCcccCeEEEEEcCCCCCcccCce--EEEEEecC----------CccCccccCCcCCCCE
Confidence 35679999999999999984 4555 3333332 222 22221111 1123445588999999
Q ss_pred EEec----------cccccceeecccccCCccccccceecCCceEEEEc
Q 024968 215 VIMS----------REARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 215 lvm~----------G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+|+. |.-|-.-+|||... ..++|..|.+
T Consensus 131 ~if~t~~RPv~G~rG~yRv~~RHgVS~v-----------rsG~R~tLgl 168 (173)
T PF09859_consen 131 LIFATNHRPVRGARGYYRVNMRHGVSRV-----------RSGERHTLGL 168 (173)
T ss_pred EEEecCCCCcCCCccceecccccccccc-----------cccceEEEEE
Confidence 9986 44556677888765 4678877653
No 19
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=81.01 E-value=30 Score=32.00 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=26.1
Q ss_pred CCceeeeccCCceEEecCCCCHHHHHHHHHHHHh
Q 024968 48 KSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQN 81 (260)
Q Consensus 48 ~~~~~~~~~ipGL~~ip~fls~~Ee~~Ll~~i~~ 81 (260)
.+..+.+.--|.+.+++|||+++|++.|++.-..
T Consensus 87 p~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~ 120 (289)
T KOG1591|consen 87 PVKLEELSWDPRVVLYHDFLSDEECDHLISLAKP 120 (289)
T ss_pred chhhhhcccCCceEeehhcCCHHHHHHHHHhhhh
Confidence 3444555566889999999999999998876543
No 20
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=79.48 E-value=6.1 Score=33.52 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=52.0
Q ss_pred CCCeEEEeeeCCCCCCCCCCCCCCCC---CcEEEEecC--CceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEE
Q 024968 142 LFDQLIVNVYQPGEGICPHVDLMRFE---DGIAIVSLE--SSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 142 ~~n~~lvN~Y~pG~gI~~H~D~~~~~---~~Ia~lSLG--s~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlv 216 (260)
.|..+.++. .-....|.|...+. ..++.+-.| ....+.+-... ....-+.|.+.|||+++
T Consensus 75 pFs~~sv~~---nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~------------~~~~g~~~~~~~GtVl~ 139 (171)
T PF12851_consen 75 PFSGVSVIS---NRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLD------------PNILGVAFAYQPGTVLI 139 (171)
T ss_pred ceeceEEEe---ecCccceecCCCCCCCeEEEEecCCccccCceEeccccc------------cccCCEEEecCCCcEEE
Confidence 456665552 23578999996332 233333332 22233322100 12357889999999999
Q ss_pred eccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 217 m~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+.|.. ..||+.+..... -..+.|+||.|
T Consensus 140 ~~~~~---~~Hgvtpv~~~~------~~~~~R~slvf 167 (171)
T PF12851_consen 140 FCAKR---ELHGVTPVESPN------RNHGTRISLVF 167 (171)
T ss_pred Ecccc---eeeecCcccCCC------CCCCeEEEEEE
Confidence 98864 569999875210 13489999986
No 21
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.42 E-value=6.5 Score=35.60 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=51.6
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEec
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMS 218 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~ 218 (260)
.+-+|+|.+- -|+++|.|... |..|-=....-+.... .+..+.|.-.+|+++|.-
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g~----lTlL~qd~v~GLqV~~---------------~g~Wi~V~p~p~a~vVNi 177 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFGA----ITLLIQDDVEGLQLLK---------------DAEWLMVPPISDAILIII 177 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCCe----eEEEEeCCCCceEEee---------------CCeEEECCCCCCcEEEEc
Confidence 4568899772 27999999741 2222111111122221 146899998999999999
Q ss_pred cccccceeecccccCCccccccceecCCceEEEEc
Q 024968 219 REARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 219 G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
|++=..|..|.-+...--.. ......|+||.|
T Consensus 178 GD~l~~~tng~~~S~~HRVv---~~~~~~R~Sia~ 209 (262)
T PLN03001 178 ADQTEIITNGNYKSAQHRAI---ANANKARLSVAT 209 (262)
T ss_pred cHHHHHHhCCccccccceEE---cCCCCCEEEEEE
Confidence 99988888665433210000 002356999876
No 22
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=77.17 E-value=36 Score=30.80 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCceEEecCCCCHHHHHHHHHHHHh
Q 024968 57 IGGLCLCRDFLSPEEQSYLLSAIQN 81 (260)
Q Consensus 57 ipGL~~ip~fls~~Ee~~Ll~~i~~ 81 (260)
-.|..+++++|+++|-+.|.+.+..
T Consensus 27 ~dGyvvl~~vls~eev~~lr~~i~~ 51 (277)
T TIGR02408 27 RDGFLLLENLFSDDEVAALLAEVER 51 (277)
T ss_pred HCCEEECcccCCHHHHHHHHHHHHH
Confidence 4699999999999999999999876
No 23
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=76.08 E-value=16 Score=31.96 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCeEEEeeeCCCCCCCCCCCCCCCCCcEEEEecCCc-eeEEEeecccccccCC----CCcCCCCCceEEEEcCCCcEEEe
Q 024968 143 FDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESS-CVMHFTQVKEASATGE----GRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 143 ~n~~lvN~Y~pG~gI~~H~D~~~~~~~Ia~lSLGs~-~vm~f~~~~~~~~~~~----~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
+..+=+|.+.+|+....|.-...+-..|.-|+.-.. ..+.|........... +.........+.|.-..|.|+|+
T Consensus 95 i~~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 95 IQKAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred EeeEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 466778999999988888776544444555554332 2455543222111000 00001122355677789999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-.-.+ |++.+.. ..+.||||.|
T Consensus 175 PS~L~----H~v~p~~----------~~~~RISiSF 196 (201)
T TIGR02466 175 ESWLR----HEVPPNE----------SEEERISVSF 196 (201)
T ss_pred CCCCc----eecCCCC----------CCCCEEEEEE
Confidence 88655 9999875 3679999987
No 24
>PLN02216 protein SRG1
Probab=75.48 E-value=11 Score=35.62 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=52.1
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCCCCCcEEEEec-CCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEE
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMRFEDGIAIVSL-ESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSL-Gs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlv 216 (260)
..+-+|+|.+- -|+++|.|... |..|-- ....-+...+ .+..+.|.-.+|+++|
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~----lTlL~q~~~v~GLQV~~---------------~g~Wi~V~p~pgalvV 270 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAVG----LTILLQVNEVEGLQIKK---------------DGKWVSVKPLPNALVV 270 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCce----EEEEEecCCCCceeEEE---------------CCEEEECCCCCCeEEE
Confidence 46789999872 27999999841 222211 1111223321 1469999999999999
Q ss_pred eccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 217 m~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
.-|+.=..|.-|.-+...--... -....|+||.|
T Consensus 271 NiGD~L~~~TNG~~kS~~HRVv~---~~~~~R~Si~~ 304 (357)
T PLN02216 271 NVGDILEIITNGTYRSIEHRGVV---NSEKERLSVAT 304 (357)
T ss_pred EcchhhHhhcCCeeeccCceeec---CCCCCEEEEEE
Confidence 99999888875443321100000 01346888876
No 25
>PLN02947 oxidoreductase
Probab=74.72 E-value=14 Score=35.15 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=52.7
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
..+-+|+|.+- -|+++|.|... |..|-=..-.-+...+ .+..+.|.-.+|+++|-
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g~----lTlL~Qd~v~GLQV~~---------------~g~Wi~V~p~pga~VVN 285 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYGF----LTLLLQDEVEGLQIMH---------------AGRWVTVEPIPGSFVVN 285 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCCc----eEEEEecCCCCeeEeE---------------CCEEEeCCCCCCeEEEE
Confidence 35678999982 28999999841 2222111111122222 14699999999999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-|+.=..|.-|.-+...--... -....|+||.|
T Consensus 286 vGD~Lq~~SNG~~kS~~HRVv~---~~~~~R~Sia~ 318 (374)
T PLN02947 286 VGDHLEIFSNGRYKSVLHRVRV---NSTKPRISVAS 318 (374)
T ss_pred eCceeeeeeCCEEecccccccc---CCCCCEEEEEE
Confidence 9998878876654432100000 02357999987
No 26
>PLN02904 oxidoreductase
Probab=74.67 E-value=12 Score=35.31 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=52.4
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEec
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMS 218 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~ 218 (260)
.+-+|+|.+- -|+++|.|... |..|- ....-+..... .+..+.|.-.+|+++|--
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~----lTlL~-qd~~GLQV~~~--------------~g~Wi~V~p~pgalVVNi 269 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGS----LTILL-QSSQGLQIMDC--------------NKNWVCVPYIEGALIVQL 269 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCc----eEEEe-cCCCeeeEEeC--------------CCCEEECCCCCCeEEEEc
Confidence 5678999872 27999999841 22221 11122333222 246999999999999999
Q ss_pred cccccceeecccccCCccccccceecCCceEEEEc
Q 024968 219 REARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 219 G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
|+.=..|.-|.-+...--... -....|+|+.|
T Consensus 270 GD~Le~~TNG~~kSt~HRVv~---~~~~~R~Si~~ 301 (357)
T PLN02904 270 GDQVEVMSNGIYKSVVHRVTV---NKDYKRLSFAS 301 (357)
T ss_pred cHHHHHHhCCeeeccCCcccC---CCCCCEEEEEE
Confidence 998777765544322100000 02356999886
No 27
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=73.99 E-value=16 Score=34.18 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=44.9
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecC-CceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLE-SSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLG-s~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
.+-+|.|.+- -|+++|.|... |.+|--- .-.-+.+.. . .+..+.|.--||+++|.
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~~----lTiLlqd~~V~GLQv~~-~-------------dg~Wi~V~P~p~a~vVN 238 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKSF----LTILLQDDDVGGLQVFT-K-------------DGKWIDVPPIPGAFVVN 238 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcCc----eEEEEccCCcCceEEEe-c-------------CCeEEECCCCCCCEEEE
Confidence 6779999982 29999999852 2222111 122223332 1 25799999888999999
Q ss_pred ccccccceeecc
Q 024968 218 SREARYLWKHEI 229 (260)
Q Consensus 218 ~G~aR~~w~H~I 229 (260)
-|++=..|.=|+
T Consensus 239 iGD~l~~lSNG~ 250 (322)
T KOG0143|consen 239 IGDMLQILSNGR 250 (322)
T ss_pred cccHHhHhhCCc
Confidence 999887776654
No 28
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=73.91 E-value=15 Score=34.88 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=51.3
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCC----CCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCc
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMR----FEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGS 213 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~----~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gS 213 (260)
..+.+|+|.+- -|+++|.|.-. +.+.+.+ +...... .+..+.|.-.+|+
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~G--------LQV~~~~-------------~~~Wi~Vpp~pga 253 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGG--------LQATRDG-------------GKTWITVQPVEGA 253 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCc--------eEEEECC-------------CCeEEECCCCCCe
Confidence 45788999871 28999999841 2222222 2222211 1369999999999
Q ss_pred EEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 214 LVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 214 Llvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
++|.-|++=..|+-|.-+...--.. ......|+||.|
T Consensus 254 lVVNiGD~L~~~TNG~~kSt~HRVv---~~~~~~R~Si~~ 290 (358)
T PLN02515 254 FVVNLGDHGHYLSNGRFKNADHQAV---VNSNCSRLSIAT 290 (358)
T ss_pred EEEEccHHHHHHhCCeeeeecceEE---CCCCCCEEEEEE
Confidence 9999999877776554332100000 001356888876
No 29
>PLN02997 flavonol synthase
Probab=70.04 E-value=17 Score=33.86 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=43.0
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCC-ceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLES-SCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs-~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
.+-+|.|.+- -|+++|.|.-. |..| +-. ..-+...+ .+..+.|.-.+|+++|-
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g~----lTlL-~Qd~v~GLQV~~---------------~g~Wi~V~p~pgalvVN 243 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMGA----IALL-IPNEVPGLQAFK---------------DEQWLDLNYINSAVVVI 243 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCCc----eEEE-ecCCCCCEEEeE---------------CCcEEECCCCCCeEEEE
Confidence 5678999872 27999999841 2222 111 11122221 14589999999999999
Q ss_pred ccccccceeeccc
Q 024968 218 SREARYLWKHEIN 230 (260)
Q Consensus 218 ~G~aR~~w~H~I~ 230 (260)
-|++=..|+-|.-
T Consensus 244 iGD~Le~~TNG~~ 256 (325)
T PLN02997 244 IGDQLMRMTNGRF 256 (325)
T ss_pred echHHHHHhCCcc
Confidence 9998777875543
No 30
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=69.82 E-value=21 Score=33.58 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=51.7
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCC----CCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCc
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMR----FEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGS 213 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~----~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gS 213 (260)
..+-+|.|.+- -|+++|.|--. +.+.+.+| .... .+..+.|.-.+|+
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GL--------QV~~---------------~g~Wv~V~p~pga 256 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGL--------EVMK---------------DGEWFNVKPIANT 256 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCe--------eEee---------------CCceEECCCCCCe
Confidence 46788999872 27999999841 22222222 2211 2569999999999
Q ss_pred EEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 214 LVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 214 Llvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
++|.-|++=..|+-+.-+...--... .-....|+|+.|
T Consensus 257 lVVNiGD~Le~wTNg~~kSt~HRVv~--~~~~~~R~Sia~ 294 (341)
T PLN02984 257 LVVNLGDMMQVISDDEYKSVLHRVGK--RNKKKERYSICY 294 (341)
T ss_pred EEEECChhhhhhcCCeeeCCCCcccc--CCCCCCeEEEEE
Confidence 99999999888885443221000000 001356999876
No 31
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=67.29 E-value=15 Score=34.33 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=41.7
Q ss_pred CeEEEeeeCCC------C-CCCCCCCCCCCCCcEEEEecCC-ceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEE
Q 024968 144 DQLIVNVYQPG------E-GICPHVDLMRFEDGIAIVSLES-SCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLV 215 (260)
Q Consensus 144 n~~lvN~Y~pG------~-gI~~H~D~~~~~~~Ia~lSLGs-~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLl 215 (260)
..+-+|.|.+- . |+++|.|-- .|..| +-. ..-+....... ...+..+.|.-.+|+++
T Consensus 182 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g----~lTlL-~qd~v~GLQV~~~~~----------~~~g~Wi~Vpp~pg~~V 246 (332)
T PLN03002 182 ATMRLLRYQGISDPSKGIYACGAHSDFG----MMTLL-ATDGVMGLQICKDKN----------AMPQKWEYVPPIKGAFI 246 (332)
T ss_pred hheeeeeCCCCCCcccCccccccccCCC----eEEEE-eeCCCCceEEecCCC----------CCCCcEEECCCCCCeEE
Confidence 34568999872 2 688999983 12222 111 11123322110 01256899998999999
Q ss_pred Eecccccccee
Q 024968 216 IMSREARYLWK 226 (260)
Q Consensus 216 vm~G~aR~~w~ 226 (260)
|--|++=..|+
T Consensus 247 VNiGD~L~~wT 257 (332)
T PLN03002 247 VNLGDMLERWS 257 (332)
T ss_pred EEHHHHHHHHh
Confidence 99999987886
No 32
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=66.76 E-value=30 Score=32.46 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=52.3
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
..+-+|.|.+- -|+++|.|-.. |..|-=-...-+...... .+..+.|.-.+|+++|-
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g~----lTlL~qd~v~GLQV~~~~-------------~g~Wi~V~p~pg~~vVN 255 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGGA----LTVLAQDDVGGLQISRRS-------------DGEWIPVKPIPDAFIIN 255 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCCe----EEEEecCCCCceEEeecC-------------CCeEEEccCCCCeEEEE
Confidence 46778999872 27999999741 222210000112221111 25699999999999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-|++=..|+-|.-+...--.. .-....|+||.|
T Consensus 256 iGD~L~~~Tng~~~St~HRVv---~~~~~~R~Si~~ 288 (345)
T PLN02750 256 IGNCMQVWTNDLYWSAEHRVV---VNSQKERFSIPF 288 (345)
T ss_pred hHHHHHHHhCCeeecccceec---cCCCCCEEEEEE
Confidence 999877787665432210000 002356999876
No 33
>PLN02704 flavonol synthase
Probab=66.65 E-value=15 Score=34.40 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=51.6
Q ss_pred eEEEeeeCCC-----C-CCCCCCCCC----CCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcE
Q 024968 145 QLIVNVYQPG-----E-GICPHVDLM----RFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSL 214 (260)
Q Consensus 145 ~~lvN~Y~pG-----~-gI~~H~D~~----~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSL 214 (260)
.+-+|+|.+- . |+++|.|-- .+.+.+.+| ...+ .+..+.|.-.+|++
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GL--------QV~~---------------~g~Wi~V~p~pg~l 256 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGL--------QVFR---------------DDHWFDVKYIPNAL 256 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCcceEEEecCCCCce--------eEeE---------------CCEEEeCCCCCCeE
Confidence 3557899862 2 799999984 122222222 2221 14699999999999
Q ss_pred EEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 215 VIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 215 lvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+|.-|+.=..|.-|.-+...--... -....|+||.|
T Consensus 257 vVNvGD~L~~~TNg~~kSt~HRVv~---~~~~~R~Si~~ 292 (335)
T PLN02704 257 VIHIGDQIEILSNGKYKSVLHRTTV---NKEKTRMSWPV 292 (335)
T ss_pred EEEechHHHHHhCCeeecccceeec---CCCCCeEEEEE
Confidence 9999999888877665432100000 02356999986
No 34
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=66.58 E-value=12 Score=34.71 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=41.4
Q ss_pred CeEEEeeeCC-CC--CCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCC----CCcCCCCCceEEEEcCCCcEEE
Q 024968 144 DQLIVNVYQP-GE--GICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGE----GRIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 144 n~~lvN~Y~p-G~--gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~----~~~~~~~~~~~~v~L~~gSLlv 216 (260)
-.|-+|.|-. +. |+++|.|.. -|..|=+.+....++........... .+......+..++.|++|++|.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~----dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LY 187 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH----DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLY 187 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS----EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEE
T ss_pred cccceEEEecCCCCCCccCEECCc----ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEE
Confidence 5688999973 43 899999996 26677788888888887321111000 0011112567789999999998
Q ss_pred ecc
Q 024968 217 MSR 219 (260)
Q Consensus 217 m~G 219 (260)
+--
T Consensus 188 lPr 190 (319)
T PF08007_consen 188 LPR 190 (319)
T ss_dssp E-T
T ss_pred ECC
Confidence 853
No 35
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=66.55 E-value=31 Score=32.41 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=52.7
Q ss_pred CeEEEeeeCCC-------C-CCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEE
Q 024968 144 DQLIVNVYQPG-------E-GICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLV 215 (260)
Q Consensus 144 n~~lvN~Y~pG-------~-gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLl 215 (260)
..+-+|.|.+- . |+++|.|-.. |..|-=-...-+....+ .+..+.|.-.+|+++
T Consensus 178 ~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~----lTlL~Qd~v~GLQV~~~--------------~g~Wi~Vpp~pga~V 239 (335)
T PLN02156 178 SCLRMNHYPEKEETPEKVEIGFGEHTDPQL----ISLLRSNDTAGLQICVK--------------DGTWVDVPPDHSSFF 239 (335)
T ss_pred ceEeEEeCCCCCCCccccccCCCCccCCCc----eEEEEeCCCCceEEEeC--------------CCCEEEccCCCCcEE
Confidence 46778999762 2 7889999731 22221000011222111 256999999999999
Q ss_pred EeccccccceeecccccCCcccccccee--cCCceEEEEc
Q 024968 216 IMSREARYLWKHEINRKQGFQMWEGEVL--NQKKRTSITM 253 (260)
Q Consensus 216 vm~G~aR~~w~H~I~~~~~~~~~~g~~~--~~~~RiSLTf 253 (260)
|--|+.=..|..|.-+...- +.+ ....|+|+.|
T Consensus 240 VNiGD~l~~wTNg~~kSt~H-----RVv~~~~~~R~Siaf 274 (335)
T PLN02156 240 VLVGDTLQVMTNGRFKSVKH-----RVVTNTKRSRISMIY 274 (335)
T ss_pred EEhHHHHHHHhCCeeeccce-----eeecCCCCCEEEEEE
Confidence 99999988888776543210 001 1346999876
No 36
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=66.33 E-value=23 Score=33.33 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
..+-+|+|.+- -|+++|.|--. |..|-=-...-+...+ .+..+.|.-.+|+++|-
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g~----lTlL~Qd~v~GLQV~~---------------~g~Wi~V~p~pgalvVN 257 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDANL----ITVLLQDEVSGLQVFK---------------DGKWIAVNPIPNTFIVN 257 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCCc----eEEEEECCCCceEEEE---------------CCcEEECCCcCCeEEEE
Confidence 46788999982 27999999841 2222100001122221 14699999999999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-|++=..|+.|.-+...--... -....|+||.|
T Consensus 258 iGD~L~~~TNG~~kSt~HRVv~---~~~~~R~Sia~ 290 (348)
T PLN02912 258 LGDQMQVISNDKYKSVLHRAVV---NTDKERISIPT 290 (348)
T ss_pred cCHHHHHHhCCEEEcccccccC---CCCCCEEEEEE
Confidence 9998777876654332100000 02356999876
No 37
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=63.26 E-value=30 Score=31.74 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=53.3
Q ss_pred CeEEEeeeCC-----CC-CCCCCCCCCCCCCcEEEEecCC--ceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEE
Q 024968 144 DQLIVNVYQP-----GE-GICPHVDLMRFEDGIAIVSLES--SCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLV 215 (260)
Q Consensus 144 n~~lvN~Y~p-----G~-gI~~H~D~~~~~~~Ia~lSLGs--~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLl 215 (260)
..+-+|.|.+ +. |+++|.|.-. |..| +-. ..-+...... .+..+.|.-.+|+++
T Consensus 149 ~~lr~~~YP~~p~~~~~~g~~~HtD~g~----lTlL-~qd~~~~GLqV~~~~-------------~g~Wi~V~p~pga~v 210 (300)
T PLN02365 149 SQFRINKYNFTPETVGSSGVQIHTDSGF----LTIL-QDDENVGGLEVMDPS-------------SGEFVPVDPLPGTLL 210 (300)
T ss_pred cceeeeecCCCCCccccccccCccCCCc----eEEE-ecCCCcCceEEEECC-------------CCeEEecCCCCCeEE
Confidence 5667899955 22 8999999841 3333 111 1112332221 256999999999999
Q ss_pred EeccccccceeecccccCCcccccccee--cCCceEEEEc
Q 024968 216 IMSREARYLWKHEINRKQGFQMWEGEVL--NQKKRTSITM 253 (260)
Q Consensus 216 vm~G~aR~~w~H~I~~~~~~~~~~g~~~--~~~~RiSLTf 253 (260)
|.-|++=..|..|.-+... .+.+ ....|+|+.|
T Consensus 211 VNiGD~l~~~TNG~~~St~-----HRVv~~~~~~R~Si~~ 245 (300)
T PLN02365 211 VNLGDVATAWSNGRLCNVK-----HRVQCKEATMRISIAS 245 (300)
T ss_pred EEhhHHHHHHhCCceeccc-----ceeEcCCCCCEEEEEE
Confidence 9999998888776654321 0011 1346999876
No 38
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=63.08 E-value=26 Score=33.03 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=52.4
Q ss_pred eEEEeeeCC-----CC-CCCCCCCCCCCCCcEEEEec-CCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 145 QLIVNVYQP-----GE-GICPHVDLMRFEDGIAIVSL-ESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 145 ~~lvN~Y~p-----G~-gI~~H~D~~~~~~~Ia~lSL-Gs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
.+-+|.|.+ +. |+++|.|--. |..|-= +...-+...+ .+..+.|.-.+|+++|-
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g~----lTlL~qd~~v~GLQV~~---------------~g~Wi~V~p~pg~lVVN 264 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGSA----FTLLLPDKDVEGLQFLK---------------DGKWYKAPIVPDTILIN 264 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCCc----eEEEEecCCCCceeEeE---------------CCeEEECCCCCCcEEEE
Confidence 467899976 12 7999999841 222210 0111123321 14699999999999999
Q ss_pred ccccccceeecccccCCcccccccee--cCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVL--NQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~--~~~~RiSLTf 253 (260)
-|++=..|+.|.-+...- +.+ ....|+||.|
T Consensus 265 iGD~Le~~Tng~~kSt~H-----RVv~~~~~~R~Si~f 297 (348)
T PLN00417 265 VGDQMEIMSNGIYKSPVH-----RVVTNREKERISVAT 297 (348)
T ss_pred cChHHHHHhCCeecccce-----EEecCCCCCEEEEEE
Confidence 999988888766543210 001 2356999976
No 39
>PLN02485 oxidoreductase
Probab=61.92 E-value=27 Score=32.44 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=32.3
Q ss_pred CceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 202 AVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 202 ~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+..+.|.-.+|+++|--|++=..|+.|.-+...--... -....|+|+.|
T Consensus 235 g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~---~~~~~R~Si~~ 283 (329)
T PLN02485 235 GEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVIN---NSPKYRVCVAF 283 (329)
T ss_pred CcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecC---CCCCCeEEEEE
Confidence 56899999999999999999888885554322100000 01346888876
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=60.97 E-value=17 Score=34.07 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=53.2
Q ss_pred CeEEEeeeCCC------CCCCCCCCCCC----CCC-cEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCC
Q 024968 144 DQLIVNVYQPG------EGICPHVDLMR----FED-GIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPG 212 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~~----~~~-~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~g 212 (260)
..+-+|.|.+- -|+++|.|--. +.+ .+.+ +...+ .+..+.|.-.+|
T Consensus 190 ~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~G--------LQV~~---------------~g~Wi~V~p~pg 246 (337)
T PLN02639 190 QHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAG--------LQVLK---------------DGKWVAVNPHPG 246 (337)
T ss_pred cEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCc--------eEeec---------------CCeEEeccCCCC
Confidence 46778999882 27999999841 111 1222 22211 256999999999
Q ss_pred cEEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 213 SLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 213 SLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
+++|--|++=..|+.|.-+...--... -....|+|+.|
T Consensus 247 ~lVVNiGD~L~~~TNG~~kSt~HRVv~---~~~~~R~Sia~ 284 (337)
T PLN02639 247 AFVINIGDQLQALSNGRYKSVWHRAVV---NTDKERMSVAS 284 (337)
T ss_pred eEEEechhHHHHHhCCeeeccCccccc---CCCCCEEEEEE
Confidence 999999999888887765432100000 02356999876
No 41
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=58.78 E-value=29 Score=31.48 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=54.5
Q ss_pred eEEEeeeCCCCCCCCCCCCC-CCCCcEEEEecCCceeEEEeecccccccCCC-------CcCCCCCceEEEEcCCCcEEE
Q 024968 145 QLIVNVYQPGEGICPHVDLM-RFEDGIAIVSLESSCVMHFTQVKEASATGEG-------RIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 145 ~~lvN~Y~pG~gI~~H~D~~-~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~-------~~~~~~~~~~~v~L~~gSLlv 216 (260)
.+-++.|.+|..+..|.|.- .-+-+.+..-++.. +.-.++..+.- +..........|.=.-++|++
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~~~~R~~~yv~y~~------r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~lv~ 210 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRDKDIRLATYVYYLT------REWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSLVF 210 (252)
T ss_pred eeeeeEecCCceeEeecccCCCccceEEEEEeccC------CCCCcCCCCceeecccccccccccccccccCCCCceEEE
Confidence 35689999999999999994 33333433333322 22111111110 001112334455566789999
Q ss_pred eccccccceeecccccCCccccccceecCCceEEEE
Q 024968 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSIT 252 (260)
Q Consensus 217 m~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLT 252 (260)
|.-.....| |.|.... ....|+|||
T Consensus 211 F~s~~~Hs~-h~V~~~~----------~~~~RlsV~ 235 (252)
T COG3751 211 FKSRPSHSV-HSVEEPY----------AAADRLSVT 235 (252)
T ss_pred EEecCCccc-eeccccc----------cccceEEEe
Confidence 988888777 8887642 468899998
No 42
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.17 E-value=23 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=31.6
Q ss_pred CceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccc
Q 024968 202 AVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKL 256 (260)
Q Consensus 202 ~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v 256 (260)
...+.|.|++||++++.+.. | |+--... ....|+++||+.+
T Consensus 190 ~~~~pv~lekGDallF~~~L---~-HaA~aNr----------T~~~R~A~~~~~~ 230 (299)
T COG5285 190 RNAVPVELEKGDALLFNGSL---W-HAAGANR----------TSADRVALTLQFT 230 (299)
T ss_pred hcceeeeecCCCEEEEcchh---h-hhhhcCC----------CCcccceEEEEEe
Confidence 34788999999999999975 4 8776654 3478888888754
No 43
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=58.02 E-value=44 Score=31.65 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=51.6
Q ss_pred CeEEEeeeCCC-----C-CCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 144 DQLIVNVYQPG-----E-GICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 144 n~~lvN~Y~pG-----~-gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
..+-+|+|.+- . |+++|.|-.. |..|-=....-+...+. .+..+.|.-.+|.++|-
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~----lTiL~Qd~v~GLQV~~~--------------~~~Wi~V~p~pgalVVN 271 (358)
T PLN02254 210 AALQLNSYPVCPDPDRAMGLAPHTDSSL----LTILYQSNTSGLQVFRE--------------GVGWVTVPPVPGSLVVN 271 (358)
T ss_pred eeEEEecCCCCCCcccccCcCCccCCCc----EEEEecCCCCCceEECC--------------CCEEEEcccCCCCEEEE
Confidence 35568999872 2 8999999841 22221000011222211 13699999999999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-|+.=..|.-|.-+...--... -....|+|+.|
T Consensus 272 iGD~lq~~SNg~~kS~~HRVv~---~~~~~R~Sia~ 304 (358)
T PLN02254 272 VGDLLHILSNGRFPSVLHRAVV---NKTRHRISVAY 304 (358)
T ss_pred hHHHHHHHhCCeeccccceeec---CCCCCEEEEEE
Confidence 9998777876654432100000 02356999876
No 44
>PTZ00273 oxidase reductase; Provisional
Probab=57.12 E-value=42 Score=30.99 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=51.4
Q ss_pred CeEEEeeeCCC------C-CCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEE
Q 024968 144 DQLIVNVYQPG------E-GICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 144 n~~lvN~Y~pG------~-gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlv 216 (260)
..+-+|.|.+- . |+++|.|--. |..|.--...-+..... .+..+.|.-.+|+++|
T Consensus 177 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g~----lTlL~qd~~~GLqV~~~--------------~g~Wi~V~p~pg~lvV 238 (320)
T PTZ00273 177 SVFRMKHYPALPQTKKGRTVCGEHTDYGI----ITLLYQDSVGGLQVRNL--------------SGEWMDVPPLEGSFVV 238 (320)
T ss_pred ceeeeeecCCCCCccccCcccccccCCCe----EEEEecCCCCceEEECC--------------CCCEEeCCCCCCeEEE
Confidence 45678999762 2 6899999831 22221000011222211 2568999999999999
Q ss_pred eccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 217 m~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
.-|++=..|+-|.-+...--.. .....|+||.|
T Consensus 239 NvGD~l~~~TnG~~kSt~HRVv----~~~~~R~Si~~ 271 (320)
T PTZ00273 239 NIGDMMEMWSNGRYRSTPHRVV----NTGVERYSMPF 271 (320)
T ss_pred EHHHHHHHHHCCeeeCCCcccc----CCCCCeEEEEE
Confidence 9999987887665443210000 02346899876
No 45
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=57.00 E-value=38 Score=32.01 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=50.2
Q ss_pred eEEEeeeCCC-----C-CCCCCCCCCCCCCcEEEEec-CCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEe
Q 024968 145 QLIVNVYQPG-----E-GICPHVDLMRFEDGIAIVSL-ESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIM 217 (260)
Q Consensus 145 ~~lvN~Y~pG-----~-gI~~H~D~~~~~~~Ia~lSL-Gs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm 217 (260)
.+-+|+|.+- . |+++|.|--. |..|-- .+..-+...+ .+..+.|.-.+|+++|.
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g~----lTlL~q~~~v~GLQV~~---------------~g~W~~V~p~pgalVVN 274 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPGG----MTILLPDDNVAGLQVRR---------------DDAWITVKPVPDAFIVN 274 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCce----EEEEeeCCCCCcceeeE---------------CCEEEECCCCCCeEEEE
Confidence 5667999751 2 7999999841 211100 1111223221 24689999999999999
Q ss_pred ccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 218 SREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 218 ~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
-|++=..|+-|.-+...--... -....|+|+.|
T Consensus 275 iGD~l~~~Tng~~kSt~HRVv~---~~~~~R~Siaf 307 (362)
T PLN02393 275 IGDQIQVLSNAIYKSVEHRVIV---NSAKERVSLAF 307 (362)
T ss_pred cchhhHhhcCCeeeccceeccc---CCCCCEEEEEE
Confidence 9998777865544321000000 01346999876
No 46
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=53.56 E-value=32 Score=32.02 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCC--ceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEE
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLES--SCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVI 216 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs--~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlv 216 (260)
.+-+|.|.+- -|+++|.|.-. |..| +.. -.-+...+ .+..+.|.-.+|+++|
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g~----lTlL-~qd~~v~GLQV~~---------------~g~Wi~V~p~pg~lvV 218 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAGG----IILL-FQDDKVSGLQLLK---------------DGEWVDVPPMRHSIVV 218 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCCe----EEEE-EecCCCCCcCccc---------------CCeEEECCCCCCeEEE
Confidence 5678999862 27889999841 2222 110 01111111 2568999999999999
Q ss_pred eccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 217 m~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
.-|++=..|+.|.-+...--... -....|+|+.|
T Consensus 219 NiGD~l~~~Tng~~kS~~HRVv~---~~~~~R~Si~~ 252 (321)
T PLN02299 219 NLGDQLEVITNGKYKSVMHRVVA---QTDGNRMSIAS 252 (321)
T ss_pred EeCHHHHHHhCCceecccceeec---CCCCCEEEEEE
Confidence 99999888987765432100000 01346999876
No 47
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=51.95 E-value=50 Score=31.16 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=50.8
Q ss_pred eEEEeeeCCC-----C-CCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEec
Q 024968 145 QLIVNVYQPG-----E-GICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMS 218 (260)
Q Consensus 145 ~~lvN~Y~pG-----~-gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~ 218 (260)
.+-+|.|.+- . |+++|.|--. |..|-=....-+.... .+..+.|.-.+|+++|--
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g~----lTlL~qd~v~GLQV~~---------------~g~Wi~V~p~pg~lvVNi 272 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVSA----LTFILHNMVPGLQVLY---------------EGKWVTAKCVPDSIVVHI 272 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCCc----eEEEeeCCCCceeEeE---------------CCEEEEcCCCCCeEEEEc
Confidence 4567999862 2 7999999841 2222100111122221 146999999999999999
Q ss_pred cccccceeecccccCCccccccceecCCceEEEEc
Q 024968 219 REARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 219 G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
|++=..|.-|.-+...--... -....|+||.|
T Consensus 273 GD~L~~~TNG~~kSt~HRVv~---~~~~~R~Si~~ 304 (360)
T PLN03178 273 GDTLEILSNGRYKSILHRGLV---NKEKVRISWAV 304 (360)
T ss_pred cHHHHHHhCCccccccceeec---CCCCCeEEEEE
Confidence 998777766654432100000 01346999876
No 48
>PLN02276 gibberellin 20-oxidase
Probab=49.24 E-value=29 Score=32.86 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred CeEEEeeeCCC------CCCCCCCCCC----CCCCcEEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCc
Q 024968 144 DQLIVNVYQPG------EGICPHVDLM----RFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGS 213 (260)
Q Consensus 144 n~~lvN~Y~pG------~gI~~H~D~~----~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gS 213 (260)
..+-+|.|.+- -|+++|.|-- .+.+.|.+ +.... .+..+.|.-.+|+
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~G--------LQV~~---------------~g~Wi~V~p~pga 262 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGG--------LQVFV---------------DNKWRSVRPRPGA 262 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCc--------eEEEE---------------CCEEEEcCCCCCe
Confidence 56778999873 2799999983 11122222 22221 1569999999999
Q ss_pred EEEeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 214 LVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 214 Llvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
++|--|+.=..|..|.-+...--.. .-....|+|+.|
T Consensus 263 lVVNiGD~L~~~TNG~~kSt~HRVv---~~~~~~R~Sia~ 299 (361)
T PLN02276 263 LVVNIGDTFMALSNGRYKSCLHRAV---VNSERERRSLAF 299 (361)
T ss_pred EEEEcHHHHHHHhCCccccccceee---cCCCCCEEEEEE
Confidence 9999999988887766543210000 002357999876
No 49
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=46.84 E-value=12 Score=35.57 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=40.1
Q ss_pred CCCCeEEEeeeCCCCCCCCCCCCC------CCCCcEEEEecCCceeEEEeeccc
Q 024968 141 PLFDQLIVNVYQPGEGICPHVDLM------RFEDGIAIVSLESSCVMHFTQVKE 188 (260)
Q Consensus 141 ~~~n~~lvN~Y~pG~gI~~H~D~~------~~~~~Ia~lSLGs~~vm~f~~~~~ 188 (260)
+.|+-|++|.|.+-..++-|.|.. +.+=+|..+|.|. +.|-+.+.+.
T Consensus 312 plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d 364 (378)
T KOG2731|consen 312 PLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRD 364 (378)
T ss_pred CCcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhh
Confidence 468999999999999999999984 3567999999998 8888877654
No 50
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=44.64 E-value=79 Score=29.90 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=51.1
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCCc---eeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEE
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLESS---CVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLV 215 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs~---~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLl 215 (260)
.+-+|+|.+- -|+++|.|-.. |..| +-.. .-+.... .+..+.|.-.+|+++
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g~----lTlL-~qd~~~v~GLQV~~---------------~g~Wi~V~p~pgalV 271 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGSA----LTVL-QQGKGSCVGLQILK---------------DNTWVPVHPVPNALV 271 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCce----eEEE-EeCCCCCCCeeeee---------------CCEEEeCCCCCCeEE
Confidence 4568999862 27899999841 2222 1110 1133321 146899999999999
Q ss_pred EeccccccceeecccccCCcccccccee--cCCceEEEEc
Q 024968 216 IMSREARYLWKHEINRKQGFQMWEGEVL--NQKKRTSITM 253 (260)
Q Consensus 216 vm~G~aR~~w~H~I~~~~~~~~~~g~~~--~~~~RiSLTf 253 (260)
|.-|+.=..|.-|.-+...- +.+ ....|+||.|
T Consensus 272 VNiGD~L~~~SNG~~kS~~H-----RVv~~~~~~R~Sia~ 306 (361)
T PLN02758 272 INIGDTLEVLTNGKYKSVEH-----RAVTNKEKDRLSIVT 306 (361)
T ss_pred EEccchhhhhcCCeeecccc-----eeecCCCCCEEEEEE
Confidence 99999988887665443210 001 2356999875
No 51
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=41.61 E-value=80 Score=29.13 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=48.2
Q ss_pred eEEEeeeCCC------CCCCCCCCCCCCCCcEEEEecCC--ceeEEEeecccccccCCCCcCCCCCceEEEEcCC-CcEE
Q 024968 145 QLIVNVYQPG------EGICPHVDLMRFEDGIAIVSLES--SCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTP-GSLV 215 (260)
Q Consensus 145 ~~lvN~Y~pG------~gI~~H~D~~~~~~~Ia~lSLGs--~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~-gSLl 215 (260)
.+-+|.|.+- .|+++|.|-.. |..| +.. ..-+...+ .+..+.|.-.+ ++++
T Consensus 154 ~lrl~~YP~~~~~~~~~G~~~HtD~g~----lTlL-~q~~~v~GLqV~~---------------~g~Wi~V~p~p~~~lv 213 (303)
T PLN02403 154 GTKVAKYPECPRPELVRGLREHTDAGG----IILL-LQDDQVPGLEFLK---------------DGKWVPIPPSKNNTIF 213 (303)
T ss_pred eeeeEcCCCCCCcccccCccCccCCCe----EEEE-EecCCCCceEecc---------------CCeEEECCCCCCCEEE
Confidence 3668999772 27889999841 2111 111 11122211 24688887777 5899
Q ss_pred EeccccccceeecccccCCccccccceecCCceEEEEc
Q 024968 216 IMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITM 253 (260)
Q Consensus 216 vm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTf 253 (260)
|--|++=..|+=|.-+...--.. ......|+|+.|
T Consensus 214 VNvGD~L~~~Tng~~~S~~HRVv---~~~~~~R~Si~~ 248 (303)
T PLN02403 214 VNTGDQLEVLSNGRYKSTLHRVM---ADKNGSRLSIAT 248 (303)
T ss_pred EEehHHHHHHhCCeeecccceee---cCCCCCEEEEEE
Confidence 99999876775554332100000 002356999986
No 52
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=36.90 E-value=45 Score=27.80 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=48.6
Q ss_pred CCCeEEEeeeCCCCCCCCCCCCCC-CCCcEEEEec-CCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEecc
Q 024968 142 LFDQLIVNVYQPGEGICPHVDLMR-FEDGIAIVSL-ESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSR 219 (260)
Q Consensus 142 ~~n~~lvN~Y~pG~gI~~H~D~~~-~~~~Ia~lSL-Gs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G 219 (260)
.+-.+.+..-.||..|.||.|... .-..-..|.. ...|.|... ...+..+.|-++++..
T Consensus 78 ~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-------------------~~~~~w~~G~~~~fD~ 138 (163)
T PF05118_consen 78 PLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-------------------GETRHWREGECWVFDD 138 (163)
T ss_dssp TCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-------------------TEEEB--CTEEEEE-T
T ss_pred chhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-------------------CeEEEeccCcEEEEeC
Confidence 345788899999999999999852 2222233333 244555532 1236778899999887
Q ss_pred ccccceeecccccCCccccccceecCCceEEEEcccccc
Q 024968 220 EARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCH 258 (260)
Q Consensus 220 ~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v~~ 258 (260)
. +.|++-.. ....||.|.+--..|
T Consensus 139 s----~~H~~~N~-----------~~~~Rv~L~vD~~hP 162 (163)
T PF05118_consen 139 S----FEHEVWNN-----------GDEDRVVLIVDFWHP 162 (163)
T ss_dssp T----S-EEEEES-----------SSS-EEEEEEEEE-T
T ss_pred C----EEEEEEeC-----------CCCCEEEEEEEeecC
Confidence 6 45777654 257999998765544
No 53
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=34.58 E-value=34 Score=31.40 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=18.5
Q ss_pred CCCceEEEEcCCCcEEEeccccccceeeccccc
Q 024968 200 PHAVKIPVYLTPGSLVIMSREARYLWKHEINRK 232 (260)
Q Consensus 200 ~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~ 232 (260)
....++.|.||.||++|.. .+-|.||=.+-
T Consensus 250 ~s~~~~~v~vpvG~~lv~N---N~fwLHGR~~F 279 (297)
T PF08943_consen 250 NSKNKFSVPVPVGSFLVIN---NHFWLHGRDKF 279 (297)
T ss_dssp T-TT-EEE---TT-EEEEE---TTTEEEEE--B
T ss_pred cCCCeEEEEcCCCcEEEEe---eEEEEeccCCC
Confidence 4567899999999999987 47899997754
No 54
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=32.40 E-value=19 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=6.4
Q ss_pred HhCCCCCCCcc
Q 024968 11 VFGGSSDSDTE 21 (260)
Q Consensus 11 ~~~~~~~~~~~ 21 (260)
.||+.+++||+
T Consensus 1 LFGSddEeed~ 11 (28)
T PF10587_consen 1 LFGSDDEEEDE 11 (28)
T ss_pred CCCCccccccH
Confidence 48866554443
No 55
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=68 Score=30.19 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=43.6
Q ss_pred CceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCcccccc-ceecCCceEEEEcc
Q 024968 177 SSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEG-EVLNQKKRTSITMR 254 (260)
Q Consensus 177 s~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g-~~~~~~~RiSLTfR 254 (260)
..|++.|...... ..+......++.|.+.|.|.+++.+.+.|++..... ..+.| -.++...|..|-+|
T Consensus 210 d~~~iN~Ye~G~~---------i~ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~-~~~~g~~s~p~~~g~~lvi~ 278 (323)
T KOG4176|consen 210 DQCTINFYEPGDG---------IPPHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNI-GNFRGSLSLPLRYGSVLVIR 278 (323)
T ss_pred CeeEEEeeCCCCC---------CCCCCChHHhcCceEEEEeecceeEEecccccccCc-cccccccccccccCeEEEeC
Confidence 4566666654331 123447888999999999999999999999987642 22333 22344455555554
No 56
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.02 E-value=68 Score=26.12 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.0
Q ss_pred CceEEecCCCCHHHHHHHHHHHHh
Q 024968 58 GGLCLCRDFLSPEEQSYLLSAIQN 81 (260)
Q Consensus 58 pGL~~ip~fls~~Ee~~Ll~~i~~ 81 (260)
.|..+++++|++++-+.|.+.+..
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHH
Confidence 488999999999999999999887
No 57
>PRK02963 carbon starvation induced protein; Validated
Probab=21.39 E-value=82 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.443 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCcEEEeccccccceeecccc
Q 024968 200 PHAVKIPVYLTPGSLVIMSREARYLWKHEINR 231 (260)
Q Consensus 200 ~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~ 231 (260)
.+...+.+.|++|+++||. .+.|.||=..
T Consensus 262 ~p~~~~~fkL~pGd~vvfD---N~RVLHGR~a 290 (316)
T PRK02963 262 TSKGILSVPVPVGKFLLIN---NLFWLHGRDR 290 (316)
T ss_pred CchhEEEEecCCceEEEEe---CeEEeeCCCC
Confidence 4556789999999999997 4788998654
No 58
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=20.28 E-value=45 Score=23.62 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=8.7
Q ss_pred HhCCCCCCCcch
Q 024968 11 VFGGSSDSDTED 22 (260)
Q Consensus 11 ~~~~~~~~~~~~ 22 (260)
.||+||++++++
T Consensus 47 ~~~esSs~s~s~ 58 (60)
T PF07491_consen 47 AFDESSSESSSD 58 (60)
T ss_pred CCCCCccccccc
Confidence 588888776654
No 59
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.07 E-value=1.9e+02 Score=24.82 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=33.2
Q ss_pred EEEEecCCceeEEEeecccccccCCCCcCCCCCceEEEEcCCCcEEEeccccccce
Q 024968 170 IAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLW 225 (260)
Q Consensus 170 Ia~lSLGs~~vm~f~~~~~~~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w 225 (260)
-+.+-|.+++-|.-+.+. ...++|+++.|+|+|+-...+..+
T Consensus 95 eiR~il~GtgYfDVrd~d--------------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 95 EIRYILEGTGYFDVRDKD--------------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred heEEEeecceEEeeccCC--------------CCEEEEEEecCCEEEecCcceeee
Confidence 345567788888887664 469999999999999998777555
Done!