BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024969
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 187 bits (474), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 2/261 (0%)
Query: 1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDS 59
MKIED + + L+ +I+ L KL ++PL S ++ + RK +++ +++QLK K+ +S
Sbjct: 751 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 810
Query: 60 QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 119
Q D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L
Sbjct: 811 QAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKP 870
Query: 120 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 179
Q AAL SCF ++ E L+ ELA+PL+ ++E A KIA+I + K+EV +YVES
Sbjct: 871 EQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES- 929
Query: 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239
R LM+V+Y W +GATF ++ +MTD++EGS+IR +RL+E + +L A +G +L++
Sbjct: 930 FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 989
Query: 240 KFAAASESLRRGIMFSNSLYL 260
K A + + R I+ + SLYL
Sbjct: 990 KMEAVLKLIHRDIVSAGSLYL 1010
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 2/261 (0%)
Query: 1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDS 59
MKIED + + L+ +I+ L KL ++PL S ++ + RK +++ +++QLK K+ +S
Sbjct: 849 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 908
Query: 60 QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 119
Q D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L
Sbjct: 909 QAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKP 968
Query: 120 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 179
Q AAL SCF ++ E L+ ELA+PL+ ++E A KIA+I + K+EV +YVES
Sbjct: 969 EQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES- 1027
Query: 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239
R LM+V+Y W +GATF ++ +MTD++EGS+IR +RL+E + +L A +G +L++
Sbjct: 1028 FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 1087
Query: 240 KFAAASESLRRGIMFSNSLYL 260
K A + + R I+ + SLYL
Sbjct: 1088 KMEAVLKLIHRDIVSAGSLYL 1108
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 4/219 (1%)
Query: 45 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 104
+ +I++L M D + D K R VLK I+ + V LKGR AC I++G EL+
Sbjct: 780 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 838
Query: 105 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN--LRMELAKPLQQLQESARKIAEI 162
+TEL+ + + ++ AL S F+ K+ E+ + LAK Q+++E +K+ +
Sbjct: 839 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCV 898
Query: 163 QNECKLEVNVDEYVESTVRPF-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 221
N ++ + DE + F +M+V+Y W++G +F E+++M+ EG+++R LDE
Sbjct: 899 FNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEI 958
Query: 222 LNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 260
+++ A+ +G L K + A E ++R I+F+ SLYL
Sbjct: 959 CREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 997
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 191 WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 249
WS G AE+ +F GS F NQL + VG +E +S S R
Sbjct: 218 WSAGCVMAEMFNRKALFRGS---------TFYNQLNKIVEVVGTPKIEDVVMFSSPSAR 267
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 191 WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 249
WS G AE+ +F GS F NQL + VG +E +S S R
Sbjct: 218 WSAGCVMAEMFNRKALFRGS---------TFYNQLNKIVEVVGTPKIEDVVMFSSPSAR 267
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 191 WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRR 250
WS G AE++Q +F GS ++++QL+ + VG + E +SE R
Sbjct: 205 WSVGCIMAELLQGKALFPGS---------DYIDQLKRIMEVVGTPSPEVLAKISSEHART 255
Query: 251 GI 252
I
Sbjct: 256 YI 257
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 191 WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRR 250
WS G AE++Q +F GS ++++QL+ + VG + E +SE R
Sbjct: 213 WSVGCIMAELLQGKALFPGS---------DYIDQLKRIMEVVGTPSPEVLAKISSEHART 263
Query: 251 GI 252
I
Sbjct: 264 YI 265
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 191 WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRR 250
WS G AE++Q +F GS ++++QL+ + VG + E +SE R
Sbjct: 213 WSVGCIMAELLQGKALFPGS---------DYIDQLKRIMEVVGTPSPEVLAKISSEHART 263
Query: 251 GI 252
I
Sbjct: 264 YI 265
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 668 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 727
Query: 241 F 241
F
Sbjct: 728 F 728
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN---QLRAAAQAVGEVNLEKK 240
L+D+ W A A+V + D G + + R+D QLRA A+ G + ++K
Sbjct: 634 LLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRALAEVYGSADAQEK 693
Query: 241 F 241
F
Sbjct: 694 F 694
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,624,100
Number of Sequences: 62578
Number of extensions: 244308
Number of successful extensions: 816
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 24
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)