Query 024969
Match_columns 260
No_of_seqs 115 out of 654
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 5E-70 1.7E-74 563.0 26.9 259 1-260 751-1010(1010)
2 4a4z_A Antiviral helicase SKI2 100.0 8.5E-70 2.9E-74 560.8 24.5 258 1-260 735-997 (997)
3 3l9o_A ATP-dependent RNA helic 100.0 1.1E-70 3.9E-75 572.0 18.1 259 1-260 849-1108(1108)
4 2va8_A SSO2462, SKI2-type heli 97.0 0.013 4.5E-07 57.7 15.2 173 66-252 471-652 (715)
5 2p6r_A Afuhel308 helicase; pro 96.0 0.22 7.4E-06 49.0 16.7 155 66-235 453-614 (702)
6 2zj8_A DNA helicase, putative 95.9 0.12 4E-06 51.0 14.0 175 65-251 453-640 (720)
7 3i4u_A ATP-dependent RNA helic 92.9 1.4 4.7E-05 38.5 12.1 139 66-233 18-156 (270)
8 4dyq_A Gene 1 protein; GP1, oc 89.6 0.82 2.8E-05 35.9 6.5 64 180-244 13-78 (140)
9 1p4x_A Staphylococcal accessor 88.7 4.9 0.00017 34.5 11.4 122 67-220 66-200 (250)
10 2xau_A PRE-mRNA-splicing facto 79.9 2 6.8E-05 43.0 5.4 63 66-131 489-551 (773)
11 2o8x_A Probable RNA polymerase 79.5 2.9 0.0001 27.6 4.7 49 180-228 16-65 (70)
12 3idw_A Actin cytoskeleton-regu 79.3 1.3 4.4E-05 31.1 2.7 25 199-223 42-66 (72)
13 1xsv_A Hypothetical UPF0122 pr 74.9 19 0.00065 26.7 8.6 67 180-249 26-93 (113)
14 4aik_A Transcriptional regulat 74.4 6.1 0.00021 30.7 5.8 61 65-129 60-130 (151)
15 1tc3_C Protein (TC3 transposas 73.2 3.1 0.0001 25.0 3.1 34 185-218 12-45 (51)
16 3jw4_A Transcriptional regulat 72.7 8.5 0.00029 29.1 6.3 60 66-129 72-141 (148)
17 3hug_A RNA polymerase sigma fa 69.4 11 0.00036 26.6 5.7 48 180-227 38-86 (92)
18 3oop_A LIN2960 protein; protei 66.2 7.9 0.00027 29.1 4.7 60 66-129 66-135 (143)
19 3mzy_A RNA polymerase sigma-H 63.0 14 0.00047 28.0 5.6 49 180-228 110-158 (164)
20 4hbl_A Transcriptional regulat 63.0 15 0.00052 27.8 5.9 57 66-129 70-136 (149)
21 1fse_A GERE; helix-turn-helix 61.4 13 0.00044 24.5 4.6 44 180-223 12-55 (74)
22 3fm5_A Transcriptional regulat 60.6 10 0.00035 28.7 4.5 61 65-129 68-138 (150)
23 3ech_A MEXR, multidrug resista 60.4 8.6 0.0003 28.8 4.0 60 66-129 66-135 (142)
24 3eco_A MEPR; mutlidrug efflux 60.0 7.8 0.00027 28.9 3.6 61 65-129 61-131 (139)
25 4b8x_A SCO5413, possible MARR- 59.8 23 0.0008 27.0 6.5 60 65-129 65-134 (147)
26 3e6m_A MARR family transcripti 59.7 11 0.00039 28.9 4.7 60 66-129 82-151 (161)
27 3nrv_A Putative transcriptiona 59.7 12 0.00041 28.1 4.7 61 65-129 68-138 (148)
28 3kp7_A Transcriptional regulat 58.8 15 0.00051 27.8 5.1 60 66-129 66-137 (151)
29 1je8_A Nitrate/nitrite respons 58.7 13 0.00046 25.7 4.4 44 180-223 22-65 (82)
30 1lj9_A Transcriptional regulat 58.6 12 0.00041 27.9 4.5 60 66-129 58-127 (144)
31 3deu_A Transcriptional regulat 58.5 11 0.00038 29.4 4.5 61 65-129 82-152 (166)
32 3bdd_A Regulatory protein MARR 57.4 39 0.0013 24.7 7.3 29 192-220 43-71 (142)
33 1s7o_A Hypothetical UPF0122 pr 56.8 57 0.0019 24.1 8.3 48 180-227 23-71 (113)
34 3nqo_A MARR-family transcripti 56.8 21 0.00071 28.5 5.9 60 66-129 72-141 (189)
35 1x3u_A Transcriptional regulat 56.2 13 0.00043 25.0 3.9 44 180-223 17-60 (79)
36 3boq_A Transcriptional regulat 56.1 11 0.00039 28.7 4.0 59 67-129 78-146 (160)
37 3g3z_A NMB1585, transcriptiona 55.9 38 0.0013 25.1 7.1 37 183-220 35-71 (145)
38 2jpc_A SSRB; DNA binding prote 55.9 14 0.00048 23.5 3.9 38 186-223 5-42 (61)
39 2fbh_A Transcriptional regulat 55.4 14 0.00046 27.5 4.3 60 66-129 67-136 (146)
40 4b8x_A SCO5413, possible MARR- 55.3 20 0.00068 27.4 5.3 54 158-220 23-77 (147)
41 1jko_C HIN recombinase, DNA-in 54.8 6.1 0.00021 24.0 1.9 34 185-218 12-45 (52)
42 3k0l_A Repressor protein; heli 54.8 10 0.00035 29.2 3.6 60 66-129 75-144 (162)
43 2qww_A Transcriptional regulat 54.6 10 0.00035 28.7 3.5 62 66-129 70-143 (154)
44 3ech_A MEXR, multidrug resista 54.4 61 0.0021 23.9 8.0 37 183-220 41-77 (142)
45 3cjn_A Transcriptional regulat 54.0 16 0.00053 28.0 4.5 60 66-129 81-150 (162)
46 3eco_A MEPR; mutlidrug efflux 53.9 18 0.0006 26.8 4.7 39 182-220 34-73 (139)
47 3bja_A Transcriptional regulat 53.5 9 0.00031 28.3 3.0 60 66-129 62-131 (139)
48 3im1_A Protein SNU246, PRE-mRN 53.5 28 0.00095 30.7 6.7 142 86-253 10-153 (328)
49 3s2w_A Transcriptional regulat 52.9 12 0.0004 28.7 3.7 60 66-129 79-148 (159)
50 3jw4_A Transcriptional regulat 52.8 21 0.00072 26.8 5.1 53 159-220 30-83 (148)
51 2elh_A CG11849-PA, LD40883P; s 52.6 21 0.00072 24.9 4.7 45 180-224 23-68 (87)
52 2gxg_A 146AA long hypothetical 52.6 17 0.00058 27.0 4.5 61 65-129 64-134 (146)
53 1sfx_A Conserved hypothetical 51.4 16 0.00056 25.5 4.0 37 183-220 24-60 (109)
54 1ku9_A Hypothetical protein MJ 51.1 23 0.00079 26.2 5.0 53 159-220 15-67 (152)
55 2gxg_A 146AA long hypothetical 50.6 27 0.00092 25.9 5.3 36 183-220 41-76 (146)
56 3u2r_A Regulatory protein MARR 50.6 46 0.0016 25.5 6.9 39 182-220 49-88 (168)
57 3m8j_A FOCB protein; all-alpha 50.6 49 0.0017 25.0 6.5 53 182-234 47-100 (111)
58 2fa5_A Transcriptional regulat 50.5 62 0.0021 24.3 7.6 37 183-220 53-89 (162)
59 1ku3_A Sigma factor SIGA; heli 50.3 29 0.00098 23.1 4.9 44 180-223 11-59 (73)
60 3bro_A Transcriptional regulat 49.9 35 0.0012 25.0 5.9 27 194-220 50-76 (141)
61 2q0z_X Protein Pro2281; SEC63, 49.7 88 0.003 27.5 9.4 145 86-254 14-158 (339)
62 2eth_A Transcriptional regulat 49.0 16 0.00055 27.8 3.8 61 65-129 72-142 (154)
63 3c57_A Two component transcrip 49.0 25 0.00085 25.0 4.6 44 180-223 28-71 (95)
64 3bro_A Transcriptional regulat 48.9 18 0.0006 26.8 4.0 60 66-129 65-134 (141)
65 3fm5_A Transcriptional regulat 48.7 24 0.00081 26.6 4.8 38 183-220 43-80 (150)
66 1s3j_A YUSO protein; structura 48.6 16 0.00055 27.6 3.8 61 65-129 65-135 (155)
67 2rnj_A Response regulator prot 48.5 19 0.00065 25.2 3.9 44 180-223 30-73 (91)
68 3bpv_A Transcriptional regulat 48.0 21 0.00071 26.2 4.3 61 65-129 57-127 (138)
69 3oop_A LIN2960 protein; protei 47.9 18 0.00063 26.9 4.0 38 182-220 40-77 (143)
70 3nqo_A MARR-family transcripti 47.8 41 0.0014 26.7 6.3 68 146-220 15-83 (189)
71 3deu_A Transcriptional regulat 47.8 16 0.00054 28.5 3.7 39 182-220 56-94 (166)
72 2hr3_A Probable transcriptiona 47.6 10 0.00034 28.5 2.4 61 65-129 64-135 (147)
73 2frh_A SARA, staphylococcal ac 46.4 32 0.0011 25.4 5.1 38 183-220 41-79 (127)
74 2rdp_A Putative transcriptiona 46.3 17 0.00058 27.3 3.5 60 66-129 71-140 (150)
75 2a61_A Transcriptional regulat 46.3 29 0.00098 25.7 4.9 37 183-220 37-73 (145)
76 2fa5_A Transcriptional regulat 45.4 27 0.00093 26.5 4.7 59 66-128 78-146 (162)
77 2p7v_B Sigma-70, RNA polymeras 45.0 25 0.00084 23.1 3.8 45 180-224 6-55 (68)
78 4hbl_A Transcriptional regulat 44.6 33 0.0011 25.8 5.1 38 182-220 44-81 (149)
79 3bj6_A Transcriptional regulat 44.6 20 0.00069 26.9 3.8 60 66-129 69-138 (152)
80 2hr3_A Probable transcriptiona 44.4 91 0.0031 22.8 7.8 38 183-220 39-76 (147)
81 1jgs_A Multiple antibiotic res 44.2 38 0.0013 24.8 5.2 29 192-220 46-74 (138)
82 2fbh_A Transcriptional regulat 43.5 47 0.0016 24.4 5.7 29 192-220 50-78 (146)
83 3bja_A Transcriptional regulat 42.9 59 0.002 23.6 6.1 36 183-220 37-73 (139)
84 3k0l_A Repressor protein; heli 42.8 62 0.0021 24.6 6.5 37 183-220 50-86 (162)
85 3bdd_A Regulatory protein MARR 42.2 20 0.00068 26.4 3.3 60 66-129 60-130 (142)
86 1lj9_A Transcriptional regulat 42.0 40 0.0014 24.8 5.1 28 193-220 42-69 (144)
87 3f3x_A Transcriptional regulat 41.9 41 0.0014 24.9 5.2 36 183-220 41-76 (144)
88 1l8d_A DNA double-strand break 41.2 1E+02 0.0034 22.4 7.7 7 24-30 47-53 (112)
89 2fbk_A Transcriptional regulat 40.9 17 0.00058 28.6 2.9 58 67-128 102-169 (181)
90 2nyx_A Probable transcriptiona 40.5 19 0.00065 27.9 3.1 60 66-129 74-143 (168)
91 2rdp_A Putative transcriptiona 40.0 1.1E+02 0.0037 22.5 7.8 37 183-220 46-82 (150)
92 2qww_A Transcriptional regulat 39.8 42 0.0014 25.1 5.0 28 193-220 54-81 (154)
93 4f92_B U5 small nuclear ribonu 39.6 3.7E+02 0.013 29.3 13.8 161 69-253 557-722 (1724)
94 1pdn_C Protein (PRD paired); p 39.6 36 0.0012 24.4 4.4 35 186-220 25-59 (128)
95 1p4w_A RCSB; solution structur 39.4 32 0.0011 24.9 3.9 43 180-222 35-77 (99)
96 3kp7_A Transcriptional regulat 39.3 69 0.0024 23.8 6.2 37 182-220 41-77 (151)
97 2k4b_A Transcriptional regulat 39.1 36 0.0012 24.7 4.2 40 180-220 36-79 (99)
98 3s2w_A Transcriptional regulat 39.1 56 0.0019 24.7 5.7 37 183-220 54-90 (159)
99 2wt7_B Transcription factor MA 38.6 61 0.0021 23.5 5.2 57 2-58 17-73 (90)
100 2whn_A PILC, pilus assembly pr 38.0 42 0.0014 24.2 4.5 35 182-216 50-84 (116)
101 3shg_B VBHA; ampylation, adeny 37.7 18 0.00063 24.3 2.1 24 180-203 28-52 (61)
102 2bv6_A MGRA, HTH-type transcri 37.6 66 0.0022 23.6 5.7 28 193-220 50-77 (142)
103 3bpv_A Transcriptional regulat 37.2 48 0.0016 24.1 4.8 37 183-220 33-69 (138)
104 3hsr_A HTH-type transcriptiona 36.7 19 0.00064 26.9 2.4 28 193-220 49-76 (140)
105 1or7_A Sigma-24, RNA polymeras 36.4 66 0.0023 24.9 5.8 46 180-225 141-187 (194)
106 3cdh_A Transcriptional regulat 36.0 48 0.0016 24.9 4.7 31 190-220 52-83 (155)
107 1r7j_A Conserved hypothetical 35.9 24 0.0008 25.4 2.7 33 65-97 34-69 (95)
108 2nyx_A Probable transcriptiona 35.4 1.3E+02 0.0046 22.8 7.4 37 183-220 49-85 (168)
109 4aik_A Transcriptional regulat 35.4 73 0.0025 24.2 5.8 38 183-220 35-72 (151)
110 1s3j_A YUSO protein; structura 35.3 87 0.003 23.2 6.2 37 183-220 41-77 (155)
111 3bj6_A Transcriptional regulat 34.7 63 0.0021 24.0 5.2 37 183-220 44-80 (152)
112 3e6m_A MARR family transcripti 34.2 53 0.0018 24.9 4.8 51 160-220 43-93 (161)
113 3boq_A Transcriptional regulat 34.1 1.1E+02 0.0038 22.8 6.7 37 183-220 51-88 (160)
114 2jn6_A Protein CGL2762, transp 34.0 36 0.0012 23.9 3.5 34 186-219 13-48 (97)
115 1k78_A Paired box protein PAX5 33.9 48 0.0016 25.0 4.4 36 185-220 39-74 (149)
116 1deb_A APC protein, adenomatou 33.8 95 0.0033 20.0 5.7 40 39-79 9-51 (54)
117 2fbk_A Transcriptional regulat 33.8 91 0.0031 24.1 6.2 39 182-220 72-112 (181)
118 1z91_A Organic hydroperoxide r 33.0 52 0.0018 24.3 4.4 29 193-221 53-81 (147)
119 2pex_A Transcriptional regulat 32.9 43 0.0015 25.1 4.0 28 193-220 60-87 (153)
120 1u78_A TC3 transposase, transp 32.0 34 0.0012 25.3 3.2 34 185-218 13-46 (141)
121 2fxa_A Protease production reg 31.8 85 0.0029 25.3 5.9 37 183-220 52-88 (207)
122 1rp3_A RNA polymerase sigma fa 31.7 87 0.003 24.9 5.9 46 180-225 188-234 (239)
123 1z7u_A Hypothetical protein EF 31.4 63 0.0021 23.4 4.5 29 192-220 33-62 (112)
124 1tty_A Sigma-A, RNA polymerase 31.3 62 0.0021 22.3 4.3 45 180-224 19-68 (87)
125 3sjb_C Golgi to ER traffic pro 31.1 1.5E+02 0.0052 21.5 8.4 63 7-76 24-87 (93)
126 2x48_A CAG38821; archeal virus 31.0 31 0.001 21.4 2.4 32 186-217 23-54 (55)
127 3cjn_A Transcriptional regulat 30.9 48 0.0016 25.1 3.9 37 183-220 56-92 (162)
128 3tgn_A ADC operon repressor AD 30.8 35 0.0012 25.2 3.1 64 65-129 65-138 (146)
129 1p4x_A Staphylococcal accessor 30.5 68 0.0023 27.1 5.2 37 184-220 37-76 (250)
130 2q1z_A RPOE, ECF SIGE; ECF sig 30.2 44 0.0015 25.8 3.7 46 180-225 136-182 (184)
131 3ov9_A Nucleoprotein; orthogon 30.1 39 0.0013 29.0 3.4 32 67-98 210-241 (245)
132 2pg4_A Uncharacterized protein 29.1 50 0.0017 22.9 3.5 28 194-221 30-58 (95)
133 2hzt_A Putative HTH-type trans 28.2 74 0.0025 22.7 4.4 30 191-220 24-54 (107)
134 2ga1_A Protein of unknown func 28.1 1E+02 0.0034 22.9 5.1 47 181-227 51-98 (106)
135 3ulq_B Transcriptional regulat 27.6 74 0.0025 22.4 4.2 43 180-222 30-72 (90)
136 1zhc_A Hypothetical protein HP 27.4 1.5E+02 0.0052 20.3 6.3 57 2-58 13-69 (76)
137 2qvo_A Uncharacterized protein 27.2 42 0.0014 23.5 2.8 26 195-220 31-56 (95)
138 1hsj_A Fusion protein consisti 26.3 56 0.0019 29.7 4.2 36 185-220 408-446 (487)
139 3vlc_E Golgi to ER traffic pro 26.3 1.2E+02 0.004 22.2 5.0 51 6-58 30-81 (94)
140 2fbi_A Probable transcriptiona 26.3 61 0.0021 23.6 3.7 28 193-220 49-76 (142)
141 2vn2_A DNAD, chromosome replic 26.2 87 0.003 23.4 4.6 26 195-220 52-77 (128)
142 3tgn_A ADC operon repressor AD 25.3 72 0.0024 23.4 4.0 34 187-220 44-77 (146)
143 3iwf_A Transcription regulator 25.1 58 0.002 23.9 3.3 28 191-218 32-59 (107)
144 4gyt_A Uncharacterized protein 24.0 27 0.00091 28.5 1.3 61 182-249 102-170 (194)
145 1tbx_A ORF F-93, hypothetical 23.7 58 0.002 22.7 3.0 28 193-220 21-52 (99)
146 2knz_A Ubiquilin-4; cytoplasm, 23.5 1.5E+02 0.005 18.8 4.7 43 66-113 9-51 (53)
147 3iuo_A ATP-dependent DNA helic 23.3 2.3E+02 0.0079 21.0 7.2 37 182-218 20-56 (122)
148 2o3f_A Putative HTH-type trans 22.8 46 0.0016 24.5 2.3 27 192-218 37-63 (111)
149 2lkp_A Transcriptional regulat 22.3 89 0.003 22.5 3.9 36 183-220 36-71 (119)
150 4fx0_A Probable transcriptiona 22.3 1.5E+02 0.0053 22.2 5.5 26 195-220 53-78 (148)
151 3cuo_A Uncharacterized HTH-typ 22.2 63 0.0022 22.1 2.9 30 191-220 34-64 (99)
152 2glo_A Brinker CG9653-PA; prot 22.2 58 0.002 20.7 2.5 35 191-225 18-56 (59)
153 3u43_A Colicin-E2 immunity pro 22.1 1.3E+02 0.0046 21.8 4.7 24 110-133 3-26 (94)
154 2dk5_A DNA-directed RNA polyme 22.0 92 0.0031 22.1 3.8 37 184-220 23-62 (91)
155 2lw9_A Unconventionnal myosin- 21.9 1.6E+02 0.0056 18.7 4.4 22 37-58 3-24 (51)
156 2imu_A Structural polyprotein 21.8 38 0.0013 21.2 1.4 10 209-218 4-13 (46)
157 2v79_A DNA replication protein 21.7 1.1E+02 0.0038 23.3 4.5 27 194-220 51-77 (135)
158 3sja_C Golgi to ER traffic pro 21.4 2E+02 0.0067 19.5 6.4 50 6-57 6-56 (65)
159 1ub9_A Hypothetical protein PH 21.0 44 0.0015 23.0 1.9 28 193-220 29-56 (100)
160 2wte_A CSA3; antiviral protein 21.0 51 0.0017 27.9 2.5 40 65-104 180-224 (244)
161 1p6r_A Penicillinase repressor 20.9 46 0.0016 22.5 1.9 38 182-220 12-53 (82)
162 3nrv_A Putative transcriptiona 20.8 1E+02 0.0036 22.6 4.1 31 191-221 50-81 (148)
163 3k8p_C DSL1, KLLA0C02695P; int 20.3 2E+02 0.0067 26.0 6.2 84 104-216 249-332 (357)
164 2fu4_A Ferric uptake regulatio 20.2 1.4E+02 0.0046 20.0 4.3 51 163-220 8-64 (83)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-70 Score=562.96 Aligned_cols=259 Identities=43% Similarity=0.724 Sum_probs=251.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhHhC
Q 024969 1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 79 (260)
Q Consensus 1 ~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~~lg 79 (260)
|+|++.++.+...+++.+++++++||||.| ++++|+++++++.+++.+++.+++++++.+++.++++|+++++||++||
T Consensus 751 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~ 830 (1010)
T 2xgj_A 751 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLG 830 (1010)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hccccHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Confidence 678899999999999999999999999999 9999999999999999999999999999888888999999999999999
Q ss_pred CCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHH
Q 024969 80 HINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI 159 (260)
Q Consensus 80 yid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i 159 (260)
|||++++||+|||+||+|+++||||+|||||+|+|++|+|+||||++||||||+++++.|.+++.+..++.++++++.+|
T Consensus 831 ~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 910 (1010)
T 2xgj_A 831 FCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKI 910 (1010)
T ss_dssp SBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999998877888999999999999999999
Q ss_pred HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 024969 160 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239 (260)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~ 239 (260)
+++|.+||+++++++|+++ |+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++|||++|.+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~ 989 (1010)
T 2xgj_A 911 AKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 989 (1010)
T ss_dssp HHHHHHTTCCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhCCCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccccCCCCC
Q 024969 240 KFAAASESLRRGIMFSNSLYL 260 (260)
Q Consensus 240 k~~~a~~~i~RdIVf~~SLYl 260 (260)
||++|+++|||||||++||||
T Consensus 990 ~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 990 KMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHHHhccCCeEecccccC
Confidence 999999999999999999997
No 2
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8.5e-70 Score=560.78 Aligned_cols=258 Identities=27% Similarity=0.444 Sum_probs=233.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhHhC
Q 024969 1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 79 (260)
Q Consensus 1 ~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~~lg 79 (260)
|+|++.+|.+...+++.++.++++||||+| ++++|+++++++.+++++++.+++++++ +++.++++|+++++||++||
T Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~ 813 (997)
T 4a4z_A 735 IEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTE 813 (997)
T ss_dssp ----CCHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcC
Confidence 578889999999999999999999999999 9999999999999999999999999999 66778899999999999999
Q ss_pred CCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCC--ccccccHHHHHHHHHHHHHHH
Q 024969 80 HINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS--EQINLRMELAKPLQQLQESAR 157 (260)
Q Consensus 80 yid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~--~~~~~~~~l~~~~~~l~~~~~ 157 (260)
|||++++||+||||||||+++|||++|||||+|+|++|+|+||||+|||||||+|++ +.|.+++.+..++.++.+++.
T Consensus 814 ~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 893 (997)
T 4a4z_A 814 FIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYK 893 (997)
T ss_dssp SBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHH
T ss_pred CcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999983 447788999999999999999
Q ss_pred HHHHHHHHcCCCCC--hhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCH
Q 024969 158 KIAEIQNECKLEVN--VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEV 235 (260)
Q Consensus 158 ~i~~~~~~~~l~~~--~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~ 235 (260)
+|+.++.+|+++++ +++|+.+ |+|+||+|||+||+|+||++||++|+++||||||||+||+|+||||++||++|||+
T Consensus 894 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~ 972 (997)
T 4a4z_A 894 KMLCVFNTHQIPLTQDEAEFLDR-KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNS 972 (997)
T ss_dssp HHHHHHHHTTCCCCHHHHHGGGS-CTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCCCccchhhhccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999986 3689999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccCCCCC
Q 024969 236 NLEKKFAAASESLRRGIMFSNSLYL 260 (260)
Q Consensus 236 ~L~~k~~~a~~~i~RdIVf~~SLYl 260 (260)
+|.+||++|+++|||||||++||||
T Consensus 973 ~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 973 TLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred HHHHHHHHHHHHhcCCeeecccccC
Confidence 9999999999999999999999997
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-70 Score=572.04 Aligned_cols=259 Identities=43% Similarity=0.724 Sum_probs=225.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhHhC
Q 024969 1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 79 (260)
Q Consensus 1 ~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~~lg 79 (260)
|+|++.+|.++..+++.|+.++++||||.| ++++|+++++++.+++.+++.+++++++.+++.++++|+++++||++||
T Consensus 849 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~ 928 (1108)
T 3l9o_A 849 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLG 928 (1108)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 9999999999999999999999999999888889999999999999999
Q ss_pred CCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHH
Q 024969 80 HINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI 159 (260)
Q Consensus 80 yid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i 159 (260)
|||++++||+|||+||+|+++||||+|||||+|+|++|+|+||||+|||||||+++++.|.+++.+..++.++++++++|
T Consensus 929 ~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 1008 (1108)
T 3l9o_A 929 FCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKI 1008 (1108)
T ss_dssp SCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHH
T ss_pred CcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999998887888999999999999999999
Q ss_pred HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 024969 160 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239 (260)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~ 239 (260)
+.++.+||+++++++|+.+ |+|+||++||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|.+
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~ 1087 (1108)
T 3l9o_A 1009 AKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 1087 (1108)
T ss_dssp HHHHHHTTCSCHHHHHHHH-HCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHH
T ss_pred HHHHHHhCCCCChHHhccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccccCCCCC
Q 024969 240 KFAAASESLRRGIMFSNSLYL 260 (260)
Q Consensus 240 k~~~a~~~i~RdIVf~~SLYl 260 (260)
||++|+++|||||||++||||
T Consensus 1088 k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1088 KMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHHhcCCEEeeccccC
Confidence 999999999999999999997
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.01 E-value=0.013 Score=57.71 Aligned_cols=173 Identities=12% Similarity=0.064 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhHhCCCCCCC---ccchhhHHHhhhccCChHHHHHHHhhCCCC--CCCHHHHHHHhhhhc-cccCCCccc
Q 024969 66 DELKNRSRVLKKLGHINADG---VVQLKGRAACLIDTGDELLVTELMFNGTFN--DLDHHQVAALASCFI-PVDKSSEQI 139 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~~---~~t~kGrva~eI~~~~eLlltEll~~g~f~--~L~p~elaallS~~v-~e~~~~~~~ 139 (260)
+.+...++.|.++|+|+.++ .+|..|++++..+- +.-+ +.++..+.=. ..+..++..++|+.. ++ + .
T Consensus 471 ~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~----~-~ 543 (715)
T 2va8_A 471 VYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI-NPFT-ADIIRKGLEGHKASCELAYLHLLAFTPDGP----L-V 543 (715)
T ss_dssp HHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC-CHHH-HHHHHHHHHHSCCCCHHHHHHHHHHSTTSC----C-C
T ss_pred HHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcC-CHhH-HHHHHHHhhhccCCCHHHHHHHhhcCcccc----c-C
Confidence 35788899999999998753 79999999999986 4433 3333222111 245566666655432 21 1 1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcC---CCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHH
Q 024969 140 NLRMELAKPLQQLQESARKIAEIQNECK---LEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 216 (260)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~i~~~~~~~~---l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~r 216 (260)
...+.=...+ .+...+ . ...+ .+.....|..........-+.++|.+|.++.+|++..++..||+.....
T Consensus 544 ~~r~~e~~~l---~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~ 616 (715)
T 2va8_A 544 SVGRNEEEEL---IELLED---L-DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVE 616 (715)
T ss_dssp CCCHHHHHHH---HHHHTT---C-SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccChHHHHHH---HHHHHh---c-chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHH
Confidence 1222111111 111100 0 0111 1122111211001235677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 024969 217 RLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI 252 (260)
Q Consensus 217 Rl~elLrql~~a~~~ig~~~L~~k~~~a~~~i~RdI 252 (260)
...-+++.+...+..+|...+...+......|..++
T Consensus 617 ~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv 652 (715)
T 2va8_A 617 TMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 652 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988888777777766655
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.04 E-value=0.22 Score=48.95 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhHhCCCCCC--CccchhhHHHhhhccCChHHHHHHHhhCCCCC-CCHHHHHHHhhhhccccCCCcccccc
Q 024969 66 DELKNRSRVLKKLGHINAD--GVVQLKGRAACLIDTGDELLVTELMFNGTFND-LDHHQVAALASCFIPVDKSSEQINLR 142 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~--~~~t~kGrva~eI~~~~eLlltEll~~g~f~~-L~p~elaallS~~v~e~~~~~~~~~~ 142 (260)
+.+...++.|.++|+|+.+ ..+|..|++++..+- +.- .+.++..+.=.. .+..++..++|....- ++.+.-+
T Consensus 453 ~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~e~---~~i~~r~ 527 (702)
T 2p6r_A 453 YELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI-DPL-TGFIFHDVLSRMELSDIGALHLICRTPDM---ERLTVRK 527 (702)
T ss_dssp HHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC-CHH-HHHHHHHHTTTCCCCHHHHHHHHHHSTTS---CCCCCCT
T ss_pred HHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC-CHH-HHHHHHHHhhcccCCHHHHHHHhhCCccc---ccCCCCC
Confidence 5678889999999999876 689999999999885 443 344554443222 4555666665532211 1111001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCC---hhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 143 MELAKPLQQLQESARKIAEIQNECKL-EVN---VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 143 ~~l~~~~~~l~~~~~~i~~~~~~~~l-~~~---~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
.+ .. +. +...+ . .+++ +++ ..+|-.........-+.++|.+|.++.+|++..++..||+.......
T Consensus 528 ~e-~~-~~---~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a 597 (702)
T 2p6r_A 528 TD-SW-VE---EEAFR---L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETA 597 (702)
T ss_dssp TT-HH-HH---HHHHH---H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ch-HH-HH---HHHHh---c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHH
Confidence 11 11 11 11111 0 1222 222 10011000123567789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCH
Q 024969 219 DEFLNQLRAAAQAVGEV 235 (260)
Q Consensus 219 ~elLrql~~a~~~ig~~ 235 (260)
.-+++-+...+...|..
T Consensus 598 ~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 598 EWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCHH
Confidence 99999999998888864
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.87 E-value=0.12 Score=51.00 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhHhCCCC-CCC---ccchhhHHHhhhccCChHHHHHHHhhCC-C--CCCCHHHHHHHhhhhccccCCCc
Q 024969 65 RDELKNRSRVLKKLGHIN-ADG---VVQLKGRAACLIDTGDELLVTELMFNGT-F--NDLDHHQVAALASCFIPVDKSSE 137 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid-~~~---~~t~kGrva~eI~~~~eLlltEll~~g~-f--~~L~p~elaallS~~v~e~~~~~ 137 (260)
.+.+...++.|.+.|+|+ .++ .+|..|+++++.+- +.-.. .++.... + ...+..++..++|.... .+.
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~e---~~~ 527 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYI-DPYTA-KMFKDKMEEVVKDPNPIGIFHLISLTPD---ITP 527 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTC-CHHHH-HHHHHHHHHHHHSCCHHHHHHHHHTSTT---CCC
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcC-CHHHH-HHHHHHHHhhccCCCHHHHHHHhccCcc---ccc
Confidence 356888899999999998 544 79999999999986 44433 3332211 1 01345566666654321 011
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCh--hh--hhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchH
Q 024969 138 QINLRMELAKPLQQLQESARKIAEIQNEC--KLEVNV--DE--YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSI 211 (260)
Q Consensus 138 ~~~~~~~l~~~~~~l~~~~~~i~~~~~~~--~l~~~~--~~--~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdi 211 (260)
. ...+.=...+ .+.. .+...+. .+++.. ++ |......+...-+.++|.++.++.+|.+..++..||+
T Consensus 528 i-~~r~~e~~~l---~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl 600 (720)
T 2zj8_A 528 F-NYSKREFERL---EEEY---YEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDI 600 (720)
T ss_dssp C-CCCHHHHHHH---HHHH---HHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred c-ccCHHHHHHH---HHHH---HhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhH
Confidence 1 1222111111 1111 1110111 122221 00 1110012346778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCC
Q 024969 212 IRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRG 251 (260)
Q Consensus 212 VR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~i~Rd 251 (260)
........-+++-+...+..+|...+...+..-...|.-+
T Consensus 601 ~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~g 640 (720)
T 2zj8_A 601 YRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYG 640 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999876666665544444433
No 7
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=92.85 E-value=1.4 Score=38.53 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhHhCCCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHH
Q 024969 66 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMEL 145 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l 145 (260)
+.+.+=+..|..+|.||+++.+|..|+..+++-. ++-+---++....|.-+ .+++.++|++-.++.. ..+...
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~--~~~l~iaA~Ls~~~~f---~~p~~~- 90 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCS--EEMLTIVSMLSVQNVF---YRPKDK- 90 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCH--HHHHHHHHHHTSSCCB---CCCGGG-
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCH--HHHHHHHHHHCCCccc---cCCchh-
Confidence 4566778899999999999999999999999974 55444444444444433 3444444444433211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 024969 146 AKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 225 (260)
Q Consensus 146 ~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql 225 (260)
.+ .+. +...++..+..|+ ..+..+...|.+...=.+-|..-.+. .+.+++..++-+|+
T Consensus 91 ~~-------~a~-----~~~~~f~~~~sD~------ltlLn~~~~~~~~~~~~~wC~~~fL~----~~~l~~~~~ir~QL 148 (270)
T 3i4u_A 91 QA-------LAD-----QKKAKFHQTEGDH------LTLLAVYNSWKNNKFSNPWCYENFIQ----ARSLRRAQDIRKQM 148 (270)
T ss_dssp HH-------HHH-----HHHHTTCBTTBHH------HHHHHHHHHHHHTTTCHHHHHHTTBC----HHHHHHHHHHHHHH
T ss_pred HH-------HHH-----HHHHHccCCCChH------HHHHHHHHHHHHcCchhhHHHHhcCC----HHHHHHHHHHHHHH
Confidence 10 010 1112333333333 35666677775432223444443333 25677888888888
Q ss_pred HHHHhhcC
Q 024969 226 RAAAQAVG 233 (260)
Q Consensus 226 ~~a~~~ig 233 (260)
....+-.|
T Consensus 149 ~~~l~~~~ 156 (270)
T 3i4u_A 149 LGIMDRHK 156 (270)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 87765333
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=89.64 E-value=0.82 Score=35.86 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=52.5
Q ss_pred CcccHHHHHHHh-hCCCCHHHHHhhcCC-CcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCW-SKGATFAEVIQMTDI-FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAA 244 (260)
Q Consensus 180 ~~~~l~~vv~~W-a~G~~f~~i~~~t~l-~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a 244 (260)
+++.+++-+..+ +.|.|+.+||...++ +.-+|-||+.+=.|+..++..|-.. +...+.+.+.+.
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar~~-~~~~~~~~~~~i 78 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEA-RADSIFEEIFEI 78 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 889999988888 999999999999999 8999999999999988888887433 444555554443
No 9
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=88.68 E-value=4.9 Score=34.48 Aligned_cols=122 Identities=13% Similarity=0.042 Sum_probs=69.3
Q ss_pred HHHHHHHHHhHhCCCCC----CC------ccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCC
Q 024969 67 ELKNRSRVLKKLGHINA----DG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS 136 (260)
Q Consensus 67 e~~~~~~vL~~lgyid~----~~------~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~ 136 (260)
..-.+++=|++.|||.. ++ .+|.+|+-..+-- .+++...+..+--+ .-+
T Consensus 66 t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~--------------------~~~~~~~~eq~s~E-~~~ 124 (250)
T 1p4x_A 66 DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAER--------------------VTLFDQIIKQFNLA-DQS 124 (250)
T ss_dssp GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHH--------------------HHHHHHHHHHHHHH-TTC
T ss_pred hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHH--------------------HHHHHHHHHHHhcc-ccc
Confidence 44578889999999954 22 5999998742211 01222222222222 111
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhC---CCCHHHHHhhcCCCcchHHH
Q 024969 137 EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSK---GATFAEVIQMTDIFEGSIIR 213 (260)
Q Consensus 137 ~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~---G~~f~~i~~~t~l~EGdiVR 213 (260)
-.+.+|..+...+.....+......+...+|+..+. +.+. .+-|.+ |.+..+|.+...+..|++.|
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q---------~~vL--~~L~~~~~~~~t~~eLa~~l~i~~~tvt~ 193 (250)
T 1p4x_A 125 ESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVE---------FTIL--AIITSQNKNIVLLKDLIETIHHKYPQTVR 193 (250)
T ss_dssp CSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHH---------HHHH--HHHHTTTTCCEEHHHHHHHSSSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH---------HHHH--HHHHhCCCCCcCHHHHHHHHCCChhhHHH
Confidence 011223334443333333344445556677764431 2333 334544 37999999999999999999
Q ss_pred HHHHHHH
Q 024969 214 SARRLDE 220 (260)
Q Consensus 214 ~~rRl~e 220 (260)
.+.||++
T Consensus 194 ~v~rLe~ 200 (250)
T 1p4x_A 194 ALNNLKK 200 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999976
No 10
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.91 E-value=2 Score=43.01 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHhCCCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhcc
Q 024969 66 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIP 131 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~ 131 (260)
+.+.+-++.|..+|.||+++.+|..|+.++++.- +.-+---++....|.-+ .+++.++|++-.
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~--~~~l~i~a~ls~ 551 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCS--QEILTIVAMLSV 551 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCH--HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCch--hHHHHHHHhccc
Confidence 5678889999999999998999999999999984 55555445555444433 344444444443
No 11
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.47 E-value=2.9 Score=27.59 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=38.2
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 228 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a 228 (260)
+++.--.++.. +..|.|+.+|-+..+++++.+=+.+.|...-|++.-..
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 55555666654 68999999999999999999999999998888875443
No 12
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=79.31 E-value=1.3 Score=31.12 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.3
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 199 EVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 199 ~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+++..-++.||||||.++.++...+
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~ 66 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFG 66 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhC
Confidence 5666678999999999999887643
No 13
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=74.91 E-value=19 Score=26.73 Aligned_cols=67 Identities=4% Similarity=0.093 Sum_probs=49.3
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 249 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~i~ 249 (260)
+.+.--.++.. ...|.|..+|-+..++++|.+=+.+.|...-|++.-.-. |..+...+.......|+
T Consensus 26 L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 55555666655 489999999999999999999999999998888765443 34455555555555553
No 14
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.38 E-value=6.1 Score=30.68 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhHhCCCCC----CC------ccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINA----DG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~----~~------~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+..-++++-|++.|||.. ++ .+|++|+-..+-- .+ ...-+.+..|.+++|+|+..+...+
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~--~~--~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV--DG--VISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH--HH--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH--HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3567789999999999953 22 5999999765432 11 2233445578889999988776544
No 15
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.18 E-value=3.1 Score=25.00 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 185 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 185 ~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
..++..|..|.|..+|.+..+++..+|-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4566778899999999999999999999888753
No 16
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=72.74 E-value=8.5 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+..-++++-|++.|||... -.+|.+|+-...-.. -...-+...+|++++++|+..+...+
T Consensus 72 ~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN----NIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp -CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH----HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566889999999999642 259999998765432 12344556688899999998876654
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=69.36 E-value=11 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=39.4
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 227 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~ 227 (260)
+.+.--.++.. +..|.|..+|-+..++++|.+=+.+.|...-|++.-.
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55555566655 6899999999999999999999999998888887543
No 18
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=66.15 E-value=7.9 Score=29.05 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHhCCCCC-----C-----CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~-----~-----~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...++++-|++.|||.. + -.+|.+|+-...-.. -...-+....|.+++++|+..+...+
T Consensus 66 ~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 66 PTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566789999999999964 1 259999998765432 12233445577889999988876544
No 19
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.00 E-value=14 Score=27.96 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 228 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a 228 (260)
+.+.--.|+..+..|.|+.+|-+..++++|.+=+.+.|...-|++.-..
T Consensus 110 L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666789999999999999999999999999988888875543
No 20
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.99 E-value=15 Score=27.77 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...++++-|++.|||... -.+|.+|+-...-. .+.+..-.|.+++++|+..+...+
T Consensus 70 ~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~-------~~~~~~~~~~~l~~~e~~~l~~~l 136 (149)
T 4hbl_A 70 NTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV-------FEAISSCLPQEFDTTEYDETKYVF 136 (149)
T ss_dssp HHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH-------HHHHHTTSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH-------HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 5667899999999999642 25999999875421 122233377888888877766543
No 21
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.43 E-value=13 Score=24.54 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=37.7
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+++.-..++..+..|.|..+|.+..+++++.+=+.+.|+.+-|+
T Consensus 12 L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 66777778888899999999999999999999888888776554
No 22
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.62 E-value=10 Score=28.71 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+..-++++-|++.|||... -.+|.+|+-+..-.. =...-+....|++++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK----ARVDAAHGRYFEGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999999651 259999998775432 12233345566789999888776554
No 23
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=60.37 E-value=8.6 Score=28.85 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....++++-|++.|||... -.+|.+|+-...-.. + ...-.....|.+++++|+..+...+
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 66 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE--L--IMSRVHDELFAPLTPVEQATLVHLL 135 (142)
T ss_dssp CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566889999999999651 259999998765432 1 2233344556789999988876654
No 24
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=59.98 E-value=7.8 Score=28.89 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...++++-|++.|||... -.+|.+|+-...-.. + ...-+....|++++|+|+..+...+
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT--S--IFDEMEQTLVSQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667899999999999641 259999998876432 1 2223345566789999988876554
No 25
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=59.78 E-value=23 Score=26.97 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHhCCCCC----C------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINA----D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~----~------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....-++++-|++.|||.. + -.+|.+|+-..+-. .+.+ .+ + ...|.+++++|+..+...+
T Consensus 65 ~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~--~~~~-~~-~-~~~l~~l~~ee~~~l~~~L 134 (147)
T 4b8x_A 65 PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA--TRDL-MA-M-DFGLGAYDAEECGEIFAML 134 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH--HHHH-HH-T-GGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH--HHHH-HH-H-HHHHhCCCHHHHHHHHHHH
Confidence 3567789999999999954 2 25999998765432 2222 22 3 4467889999888776544
No 26
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=59.71 E-value=11 Score=28.92 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....++++-|++.|||... -.+|.+|+-+.+-.. + ...-+....|.+++++|+..+...+
T Consensus 82 ~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 82 STTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS--P--LINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp HHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5677899999999999641 259999998875432 1 2233344566788999888776544
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.67 E-value=12 Score=28.14 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...+.++-|++.|||... -.+|.+|+-..+-.. +. ..-.....|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 138 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS--DF--AIEREKQLLEEFEEAEKDQLFILL 138 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH--HH--THHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH--HH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667899999999999642 269999998765432 11 122344456778888887766543
No 28
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=58.80 E-value=15 Score=27.79 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHhCCCCC----C--------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA----D--------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~----~--------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...+.++-|++.|||.. + -.+|.+|+-...-.. -...-.....|.+++++|+..+...+
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK----AIMSHIASDMTSDFDSKEIEKVRQVL 137 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH----HHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455678999999999973 1 269999998765432 12334456678889999888876654
No 29
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.66 E-value=13 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+.+.-.+++...+.|.|..+|-+..+++++.+=+.+.|+..-|+
T Consensus 22 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 22 LTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 77777788888899999999999999999999888888776664
No 30
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=58.62 E-value=12 Score=27.89 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...+.++-|++.|||... -.+|.+|+-...-.. +. ..-+....|.+++++|+..+...+
T Consensus 58 ~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 127 (144)
T 1lj9_A 58 TTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV--RE--NQHSNQVALQGLSEVEISQLADYL 127 (144)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--HH--HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999641 259999987764321 11 122345566778888777765544
No 31
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=58.47 E-value=11 Score=29.40 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....-++++-|++.|||... -.+|.+|+-+..-.. + ...-+....|.+++++|+..+...+
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME--E--VIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35667889999999999642 259999998775432 1 2223344456678888877766544
No 32
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.42 E-value=39 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=26.4
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 192 SKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 192 a~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
..|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999987
No 33
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=56.83 E-value=57 Score=24.10 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=39.6
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 227 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~ 227 (260)
+.|.--.++.. +..|.|..+|-+..++++|++=+.+.|...-|++.-.
T Consensus 23 L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655 5899999999999999999999999998888877543
No 34
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=56.78 E-value=21 Score=28.49 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHhCCCCC-----C-----CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~-----~-----~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...++++-|++.|||.. + -.+|.+|+-...-.. +. . .-....+|.+++++++..+...+
T Consensus 72 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~~-~-~~~~~~~~~~l~~ee~~~l~~~L 141 (189)
T 3nqo_A 72 QNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS--RT-G-INFMADVFHEFTKDELETLWSLL 141 (189)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--HH-H-HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 566789999999999954 1 269999998765432 11 1 22344467899999988876665
No 35
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=56.24 E-value=13 Score=25.04 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=36.1
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+.+.--.++..+..|.|..+|-+..+++++.+=+.+.|...-|+
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 55555666666789999999999999999999888888776665
No 36
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=56.14 E-value=11 Score=28.68 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 67 ELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 67 e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
...+.++-|++.|||... -.+|.+|+-...-.. +. ..-.....|.+++++|+..+...+
T Consensus 78 tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 146 (160)
T 3boq_A 78 NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS--EA--HNRILAELLRAVSDQDMVEASAAL 146 (160)
T ss_dssp CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH--HH--HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445688999999999642 259999998764321 11 122334467778888877665443
No 37
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.90 E-value=38 Score=25.10 Aligned_cols=37 Identities=5% Similarity=0.004 Sum_probs=29.7
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 35 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 35 AVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35689999999999999999999999875
No 38
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=55.90 E-value=14 Score=23.53 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=31.4
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 186 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 186 ~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+++..++.|.|..+|-+..+++++++=..+.|+..-|+
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 45555799999999999999999999888887766553
No 39
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.37 E-value=14 Score=27.55 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...+.++-|++.|||... -.+|.+|+-...-.. -..+-+....|++++++|+..+...+
T Consensus 67 ~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 67 PTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE----AIAASVRNDVLTGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5667789999999999641 258999998765431 12233445567788888887766543
No 40
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=55.29 E-value=20 Score=27.38 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCC-CCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 158 KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG-ATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 158 ~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G-~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+......+|+..+. +.+..+++.|-.| .+..+|.+..++..+.+-|.+.||++
T Consensus 23 ~~~~~l~~~gLt~~q---------~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 23 EVDAVVKPYGLTFAR---------YEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHGGGTCCHHH---------HHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHH---------HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455567764432 4556666767554 79999999999999999999999875
No 41
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=54.85 E-value=6.1 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 185 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 185 ~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
-.++..|..|.|..+|.+..+++..+|-|++++.
T Consensus 12 ~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4555667899999999999999999998887653
No 42
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=54.85 E-value=10 Score=29.21 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHhCCCCC-----C-----CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~-----~-----~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
...-++++-|++.|||.. + -.+|.+|+-..+-.. + ...-+...+|.+++++|+..+...+
T Consensus 75 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 75 QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN--Q--VVQQLEAQMLQGVDINLAFLIRNNL 144 (162)
T ss_dssp GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH--H--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345678899999999964 1 259999998765432 1 1233445567889999888776554
No 43
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=54.56 E-value=10 Score=28.74 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHhCCCCC------C------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA------D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~------~------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...++++-|++.|||.. . -.+|.+|+-..+-..... +. .-.....|.+++++|+..+...+
T Consensus 70 ~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~-~~-~~~~~~~~~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 70 SSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANA-FM-YKAMMKVFENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCH-HH-HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhH-HH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 566789999999999975 1 259999987655433221 11 12233345678888877765543
No 44
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.42 E-value=61 Score=23.86 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=26.6
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 41 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 41 HVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444433 24789999999999999999999999976
No 45
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=53.97 E-value=16 Score=27.99 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....+.++-|++.|||... ..+|.+|+-...-.. + ...-+....|.+++++|+..+...+
T Consensus 81 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 150 (162)
T 3cjn_A 81 STLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW--P--HMRASHDRMFQGITPQERQAFLATL 150 (162)
T ss_dssp HHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999641 258999987654321 1 1223445567778888877665443
No 46
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=53.92 E-value=18 Score=26.81 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=30.8
Q ss_pred ccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++..++..- .|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34555554433 3789999999999999999999999876
No 47
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=53.55 E-value=9 Score=28.31 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhHhCCCCC-----C-----CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~-----~-----~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...+.++-|++.|||.. + ..+|.+|+-...-.. +. ..-.....+.+++++|+..+...+
T Consensus 62 ~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3bja_A 62 SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD--VQ--YSDFLKENCGCFTKEEEGILEDLL 131 (139)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--HH--HHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345578899999999954 1 258999997764321 11 122334456778888887765543
No 48
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=53.53 E-value=28 Score=30.69 Aligned_cols=142 Identities=10% Similarity=0.050 Sum_probs=84.8
Q ss_pred ccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Q 024969 86 VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQI-NLRMELAKPLQQLQESARKIAEIQN 164 (260)
Q Consensus 86 ~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~-~~~~~l~~~~~~l~~~~~~i~~~~~ 164 (260)
.+|..||+|+.-|-. - -..+.+.++.=.+++..++-.++|.-.-- ++.+ +..+. . .+.++..
T Consensus 10 ~~t~lG~iaS~yYi~-~-~T~~~f~~~l~~~~~~~~lL~ils~a~Ef---~~i~vR~~E~--~----------~l~~L~~ 72 (328)
T 3im1_A 10 STLSNGLIASHYGVS-F-FTIQSFVSSLSNTSTLKNMLYVLSTAVEF---ESVPLRKGDR--A----------LLVKLSK 72 (328)
T ss_dssp TTSSSCBCCCCCCCC-H-HHHHHHHHHCCTTCCHHHHHHHHHTCGGG---GGSCCCTTHH--H----------HHHHHHT
T ss_pred cCCchhHHHHHHCCC-H-HHHHHHHHHhcccCCHHHHHHHhccHHHH---HhcccCcchH--H----------HHHHHHH
Confidence 589999999998862 2 23344444555678888888777642211 1111 11111 1 1222223
Q ss_pred HcCCCCC-hhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 024969 165 ECKLEVN-VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 243 (260)
Q Consensus 165 ~~~l~~~-~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~ 243 (260)
++.+++. ...+ +. ......-++++|.++.++.. -..||....+....-|++-+...+...|... ...+-.
T Consensus 73 ~~~~~~~~~~~~-~~-~~~K~~lLLqa~isr~~l~~------~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~ 143 (328)
T 3im1_A 73 RLPLRFPEHTSS-GS-VSFKVFLLLQAYFSRLELPV------DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMD 143 (328)
T ss_dssp TSSSCCCTTSCS-SS-HHHHHHHHHHHHHHTCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHH
T ss_pred hCCCcccccCCC-CC-HHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHH
Confidence 3343321 1111 12 33455667899999988765 2478998888888888888888887778776 666666
Q ss_pred HHHhhcCCcc
Q 024969 244 ASESLRRGIM 253 (260)
Q Consensus 244 a~~~i~RdIV 253 (260)
....|..++.
T Consensus 144 L~q~i~q~~w 153 (328)
T 3im1_A 144 LAQMLIQGVW 153 (328)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHhhcC
Confidence 5666655554
No 49
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=52.89 E-value=12 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...++++-|++.|||... -.+|.+|+-+..-.. + ...-.....|.+++++|+..+...+
T Consensus 79 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 148 (159)
T 3s2w_A 79 GTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK--K--IASEWGEILFSSFDDRQRREITNSL 148 (159)
T ss_dssp HHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677899999999999541 259999998765432 1 1222334456678888877765543
No 50
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=52.77 E-value=21 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCCChhhhhhccCcccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 159 IAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 159 i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+......+|+..+ .+.++..++... .|.+..+|.+..++..+.+-|.+.||.+
T Consensus 30 ~~~~~~~~glt~~---------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 30 ADARLAELGLNSQ---------QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHTTCCHH---------HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHCCCCHH---------HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444455666433 245666666654 6789999999999999999999999876
No 51
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=52.65 E-value=21 Score=24.93 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred CcccH-HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 024969 180 VRPFL-MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 224 (260)
Q Consensus 180 ~~~~l-~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrq 224 (260)
+.+.+ ..++..+..|.|..+|+...++....|-||+++....-.+
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~ 68 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFM 68 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence 34443 3556666789999999999999999999999877654433
No 52
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=52.57 E-value=17 Score=27.03 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...+.++-|++.|||... -.+|.+|+-...-.. + ..+-.....|.+++++++..+...+
T Consensus 64 ~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 134 (146)
T 2gxg_A 64 QSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI--E--IYKKLANEVTGDLSEDEVILVLDKI 134 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999999641 268999998765421 1 1223334466778888777665443
No 53
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=51.41 E-value=16 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=29.5
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..+.. ..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 24 ~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 24 RIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444432 36689999999999999999999999876
No 54
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=51.14 E-value=23 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 159 IAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 159 i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+......+|+..+. ..++.+++.-..|.+..+|.+..+++.+++-|.+.+|.+
T Consensus 15 ~~~~~~~~gl~~~~---------~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 15 FSELAKIHGLNKSV---------GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHTTCCHHH---------HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhH---------HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445567754332 344555532235689999999999999999999988875
No 55
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=50.64 E-value=27 Score=25.87 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=29.8
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++ ..|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4444444 56689999999999999999999999876
No 56
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=50.62 E-value=46 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.0
Q ss_pred ccHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~W-a~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++.+++.. -.|.+..+|.+..++..+.+-|.+.||.+
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455555444 25789999999999999999999999875
No 57
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=50.56 E-value=49 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=45.2
Q ss_pred ccHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q 024969 182 PFLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGE 234 (260)
Q Consensus 182 ~~l~~vv~~W-a~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~ 234 (260)
+....+.+.- ..|.|=.++|+..++..|.|-++++||..+=+-+.+++.+..+
T Consensus 47 ekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~fY~~ 100 (111)
T 3m8j_A 47 DRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAPYYTD 100 (111)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGGGGSC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555555 8999999999999999999999999999999999999877544
No 58
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.53 E-value=62 Score=24.33 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.9
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.++||.+
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444443 45689999999999999999999999876
No 59
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.34 E-value=29 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=35.2
Q ss_pred CcccHHHHHHHh-h----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCW-S----KGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~W-a----~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+++.--.|+..- . .|.|+.+|-+..+++++.+=+.+.|...-|+
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 555555555443 3 7999999999999999999999999888877
No 60
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=49.89 E-value=35 Score=25.04 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=25.2
Q ss_pred CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 194 GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 194 G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
|.+..+|.+..++..+.+-|.++||.+
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 589999999999999999999999886
No 61
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=49.69 E-value=88 Score=27.52 Aligned_cols=145 Identities=6% Similarity=-0.002 Sum_probs=67.1
Q ss_pred ccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 024969 86 VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNE 165 (260)
Q Consensus 86 ~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 165 (260)
.+|..||+|+.-|-..+ .++.+++..=.+++..++-.++|.-.--..-+ .+..+. ..+ . ++..+
T Consensus 14 ~~t~lGriaS~yYi~~~--T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~--vR~~E~--~~l---~-------~L~~~ 77 (339)
T 2q0z_X 14 APLNLGMIAAYYYINYT--TIELFSMSLNAKTKVRGLIEIISNAAEYENIP--IRHHED--NLL---R-------QLAQK 77 (339)
T ss_dssp -------------------------------CCHHHHHHHHHTSGGGTTCC--CCTTCH--HHH---H-------HHHHH
T ss_pred ccCcHHHHHHHHCCCHH--HHHHHHHHhcccCCHHHHHHHHhchHHHhcCC--CCcchH--HHH---H-------HHHHh
Confidence 58999999999986322 23334445555677777777666432211110 011111 111 1 12222
Q ss_pred cCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 024969 166 CKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 245 (260)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~ 245 (260)
+.++++..++ +. ......-++++|-++.++. + + ..||....+....-|++-+...+...|.......+-+..
T Consensus 78 ~~~~~~~~~~-~~-~~~K~~lLLqa~isr~~l~-~-~----l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~ 149 (339)
T 2q0z_X 78 VPHKLNNPKF-ND-PHVKTNLLLQAHLSRMQLS-A-E----LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELA 149 (339)
T ss_dssp SSSCCSSCCT-TC-HHHHHHHHHHHHHTTCCCC-H-H----HHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCCccccCCC-CC-HHHHHHHHHHHHHcCCCCC-h-H----HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444322122 12 2345566789999998775 3 2 278999999888888888888887778877777777766
Q ss_pred HhhcCCccc
Q 024969 246 ESLRRGIMF 254 (260)
Q Consensus 246 ~~i~RdIVf 254 (260)
..|..++..
T Consensus 150 q~i~q~~w~ 158 (339)
T 2q0z_X 150 QMVTQAMWS 158 (339)
T ss_dssp HHHHHTCCT
T ss_pred HHHHHhcCC
Confidence 666665543
No 62
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.97 E-value=16 Score=27.77 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...+.++-|++.|||... ..+|.+|+-...-.. + ...-....+|++++++|+..+...+
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~ee~~~l~~~L 142 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL--S--NFESLLKSVLEKFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35677899999999999641 258999987764321 1 1122334455677777776665443
No 63
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.96 E-value=25 Score=24.99 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=37.3
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+.+.-..++...+.|.|..+|-+..+++++++=..+.|+..-|+
T Consensus 28 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 28 LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 66666677777799999999999999999999888888776665
No 64
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=48.88 E-value=18 Score=26.76 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....+.++-|++.|||... -.+|.+|+-..+-.. + ..+-+....+.+++++|+..+...+
T Consensus 65 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 134 (141)
T 3bro_A 65 STATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL--S--YMDSDQSQMTSGLNKEEVVFLEKIL 134 (141)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999541 248999987665432 1 2334445567788888887765543
No 65
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=48.68 E-value=24 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++.--.|.+..+|.+..++..+.+-|.+.||.+
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 44444443233569999999999999999999999875
No 66
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=48.65 E-value=16 Score=27.56 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.....+.++-|++.|||... ..+|.+|+-...-.. +. .+-+....+.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 135 (155)
T 1s3j_A 65 PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL--AG--RKAIMARYLSFLTEEEMLQAAHIT 135 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667889999999999541 258999987764321 11 122233355667777776665443
No 67
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=48.46 E-value=19 Score=25.24 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+.+.-..++...+.|.|..+|-+..+++++.+=..+.|+..-|+
T Consensus 30 Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 30 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp CCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 67777777777899999999999999999999888888776554
No 68
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=48.04 E-value=21 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...+.++-|++.|||... -.+|.+|+-...-.. +. ..-.....+.+++++|+..+...+
T Consensus 57 ~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 127 (138)
T 3bpv_A 57 KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL--KV--EERWEDLLFRDFTEDERKLFRKMC 127 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH--HH--HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999999651 258999987654321 11 122344466778888777665543
No 69
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=47.91 E-value=18 Score=26.91 Aligned_cols=38 Identities=13% Similarity=-0.062 Sum_probs=30.7
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++..++.. .|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 40 ~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 40 WSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3445555443 6789999999999999999999999876
No 70
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=47.82 E-value=41 Score=26.65 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHh-hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 146 AKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCW-SKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 146 ~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~W-a~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
...+..+..+...+.......--++++ -.+.++.+++.. -.|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~lt~-------~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 15 NQTYATLFTLTNKIQIEGDKYFGILTS-------RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCH-------HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCH-------HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555554443322112333 223444444443 24699999999999999999999999875
No 71
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=47.76 E-value=16 Score=28.49 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.2
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++..++..-.|.+..+|.+..++..+.+-|.+.||.+
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 345555544445689999999999999999999999876
No 72
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.64 E-value=10 Score=28.46 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCC-CCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFN-DLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~-~L~p~elaallS~~ 129 (260)
.+...+.++-|++.|||... -.+|.+|+-...-.. + ..+-.....|. +++++|+..+...+
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~~l~~~e~~~l~~~l 135 (147)
T 2hr3_A 64 SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR--A--KREEWLVRAMHACLDESERALLAAAG 135 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH--H--HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH--H--HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35667899999999999641 259999987654321 1 11122233444 67888777766543
No 73
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.38 E-value=32 Score=25.42 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=29.6
Q ss_pred cHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++... .|.+..+|.+..++..+++-|.+.||.+
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444321 4679999999999999999999999976
No 74
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=46.26 E-value=17 Score=27.25 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....+.++-|++.|||... -.+|.+|+-...-.. +. ..-.....|.+++++|+..+...+
T Consensus 71 ~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 140 (150)
T 2rdp_A 71 STTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI--EK--RQRDLANVLESFSDEEIVVFERCL 140 (150)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH--HH--HHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH--HH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667789999999999641 259999997654321 11 112233455667887777665443
No 75
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.25 E-value=29 Score=25.68 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=30.0
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 37 ~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 37 DILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44444443 46789999999999999999999999876
No 76
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=45.40 E-value=27 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC 128 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~ 128 (260)
....++++-|++.|||... ..+|.+|+-...-.. +. ..-+....+.+++++|+..+...
T Consensus 78 ~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~ 146 (162)
T 2fa5_A 78 VAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA--PL--VNEMEQRLMSVFSAEEQQTLERL 146 (162)
T ss_dssp HHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHH
Confidence 5667789999999999652 258999987654321 11 12233344566777777665443
No 77
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.97 E-value=25 Score=23.08 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=35.4
Q ss_pred CcccHHHHHHHhh-----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWS-----KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 224 (260)
Q Consensus 180 ~~~~l~~vv~~Wa-----~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrq 224 (260)
+++.--.++.... .|.|+.+|-+..+++++.+=+.+.|...-|++
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5555556665554 89999999999999999998888887766654
No 78
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=44.64 E-value=33 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=30.2
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 44 ~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 44 YLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444443 26689999999999999999999999875
No 79
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=44.61 E-value=20 Score=26.86 Aligned_cols=60 Identities=8% Similarity=-0.025 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....+.++-|++.|||... -.+|.+|+-...-.. +. ..-.....|.+++++|+..+...+
T Consensus 69 ~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 138 (152)
T 3bj6_A 69 QYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR--AD--EMAKLALFSEGFSSVELTAYHKVQ 138 (152)
T ss_dssp HHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999541 258999987654321 11 122334455667777776665443
No 80
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.35 E-value=91 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.1
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++....|.+..+|.+..++..+.+-|.+++|.+
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34444443245689999999999999999999999976
No 81
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=44.22 E-value=38 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=26.3
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 192 SKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 192 a~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
..|.+..+|.+..+++.+.+-|.++||.+
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 35689999999999999999999999886
No 82
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.49 E-value=47 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.9
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 192 SKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 192 a~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
..|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34579999999999999999999999876
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=42.91 E-value=59 Score=23.60 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=29.0
Q ss_pred cHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..+ |. .|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 37 ~iL~~l--~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 37 GVIQVL--AKSGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp HHHHHH--HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred HHHHHH--HHcCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344444 44 4579999999999999999999999987
No 84
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=42.77 E-value=62 Score=24.57 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=29.6
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++.+++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 50 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 50 TALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp HHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35689999999999999999999999875
No 85
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=42.22 E-value=20 Score=26.44 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHhCCCCCC----------CccchhhHHHh-hhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINAD----------GVVQLKGRAAC-LIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~-eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
+...+.++-|++.|||... ..+|.+|+-.. .-.. +.+ +-+....+.+++++++..+...+
T Consensus 60 ~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~--~~~--~~~~~~~~~~l~~~e~~~l~~~l 130 (142)
T 3bdd_A 60 AAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPS--AHH--QAIKTSMNQILTVEESEQFLATL 130 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCC--HHH--HHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH--HHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999642 25899999776 3321 221 22333345567777776665543
No 86
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=41.99 E-value=40 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4579999999999999999999999876
No 87
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=41.93 E-value=41 Score=24.89 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=28.9
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..+ |..|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 41 ~iL~~l--~~~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 41 SILKAT--SEEPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp HHHHHH--HHSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344444 445559999999999999999999999986
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.17 E-value=1e+02 Score=22.37 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=5.7
Q ss_pred cCCCCCC
Q 024969 24 AHPLNKS 30 (260)
Q Consensus 24 ~~p~~~c 30 (260)
.-||..|
T Consensus 47 g~~CPvC 53 (112)
T 1l8d_A 47 KGKCPVC 53 (112)
T ss_dssp SEECTTT
T ss_pred CCCCCCC
Confidence 4589999
No 89
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=40.90 E-value=17 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhh
Q 024969 67 ELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC 128 (260)
Q Consensus 67 e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~ 128 (260)
...++++-|++.|||... -.+|.+|+-...-.. + ...-....+|.+++++|+..+...
T Consensus 102 tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~ 169 (181)
T 2fbk_A 102 STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL--P--AHLATTQRVLAPLSAQEQRTLEEL 169 (181)
T ss_dssp GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344678999999999652 259999998765321 1 111222334556677666655443
No 90
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=40.51 E-value=19 Score=27.93 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHhCCCCC----C------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 66 DELKNRSRVLKKLGHINA----D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~----~------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
....++++-|++.|||.. . -.+|.+|+....-.. +. ..-.....|.+++++|+..+...+
T Consensus 74 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~ee~~~l~~~L 143 (168)
T 2nyx_A 74 SATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT--EH--RRTEIARIVEQMAPAERHGLVRAL 143 (168)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 566779999999999954 1 259999987754321 11 111223355567877776655444
No 91
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=40.02 E-value=1.1e+02 Score=22.48 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=29.7
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.+++|.+
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44444433 45689999999999999999999999876
No 92
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=39.84 E-value=42 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=25.6
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999886
No 93
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=39.62 E-value=3.7e+02 Score=29.30 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=92.1
Q ss_pred HHHHHHHhHhCCCCC---C--CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccH
Q 024969 69 KNRSRVLKKLGHINA---D--GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRM 143 (260)
Q Consensus 69 ~~~~~vL~~lgyid~---~--~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~ 143 (260)
..-++.|.+.|+|.. + ..+|.-||+++..+- +.-. .+.+.+..=..++..++-.++|.---- +. .....
T Consensus 557 ~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi-~~~t-~~~~~~~l~~~~~~~~ll~~is~s~ef---~~-i~~R~ 630 (1724)
T 4f92_B 557 HTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYI-TNDT-VQTYNQLLKPTLSEIELFRVFSLSSEF---KN-ITVRE 630 (1724)
T ss_dssp HHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTC-CHHH-HHHHHHHCCTTCCHHHHHHHHHTCGGG---TT-CCCCG
T ss_pred HHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcC-CHHH-HHHHHhhcCCCCCHHHHHHHHhCChhh---cc-CCcCH
Confidence 456788999999942 2 369999999999885 3322 233333333457777777766532211 11 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 024969 144 ELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLN 223 (260)
Q Consensus 144 ~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLr 223 (260)
+=...+++ +...+.+++... +.. ......-++..|-++.++.+..-. ||....++-..-++|
T Consensus 631 ~E~~~l~~----------l~~~~~~~~~~~--~~~-~~~Kv~~Llq~~i~~~~~~~~~l~-----~D~~~i~~~a~ri~r 692 (1724)
T 4f92_B 631 EEKLELQK----------LLERVPIPVKES--IEE-PSAKINVLLQAFISQLKLEGFALM-----ADMVYVTQLAGRLMR 692 (1724)
T ss_dssp GGHHHHHH----------HHHHSSSCCCSC--CSS-HHHHHHHHHHHHHTTCCCCCHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHhcCCCCcCCC--CCC-hHHHHHHHHHHHHcCCCcccccHH-----HHHHHHHHHHHHHHH
Confidence 11111222 222334443321 111 122344468899888765544322 677777776677777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcCCcc
Q 024969 224 QLRAAAQAVGEVNLEKKFAAASESLRRGIM 253 (260)
Q Consensus 224 ql~~a~~~ig~~~L~~k~~~a~~~i~RdIV 253 (260)
-+...+...|...+..++-.-...|.+.+.
T Consensus 693 a~~ei~~~~~~~~~~~~~l~l~k~i~~~~w 722 (1724)
T 4f92_B 693 AIFEIVLNRGWAQLTDKTLNLCKMIDKRMW 722 (1724)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCC
Confidence 777777777888888887777777776664
No 94
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=39.61 E-value=36 Score=24.41 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 186 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 186 ~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..+..|.|..+|.+..+++..+|-||++|..+
T Consensus 25 ~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 25 KIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 44555678999999999999999999999988654
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.42 E-value=32 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=37.5
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 222 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elL 222 (260)
+.+.-.+|+..++.|.|..+|-+..+++++++=..+.|+.+-|
T Consensus 35 Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 35 LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999999999988887766554
No 96
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=39.26 E-value=69 Score=23.83 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=30.5
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++..+ =..|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 41 ~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 41 SHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555 347789999999999999999999999876
No 97
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=39.08 E-value=36 Score=24.70 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=32.0
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcC----CCcchHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTD----IFEGSIIRSARRLDE 220 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~----l~EGdiVR~~rRl~e 220 (260)
..+..|.+++. ..|.+-.+|.+... +..+++-|.+.||++
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 44678887765 45689999999875 567999999999976
No 98
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.07 E-value=56 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.3
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 54 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 54 PFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35689999999999999999999999875
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.57 E-value=61 Score=23.48 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024969 2 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 58 (260)
Q Consensus 2 ~i~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 58 (260)
|++..++..+-.+-..+.+...+..|-.-..++-..+-.+...+..+++.++.+...
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888877664323344444455666777777777776665
No 100
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=38.03 E-value=42 Score=24.21 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=26.6
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 216 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~r 216 (260)
..+-.+...=..|.||++.++.++.++..++..++
T Consensus 50 ~~~~~i~~~l~~G~sls~al~~~~~fp~~~~~~i~ 84 (116)
T 2whn_A 50 EILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVR 84 (116)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHCCCCCHHHHHHHH
Confidence 34555566668999999999999888877666654
No 101
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=37.65 E-value=18 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.0
Q ss_pred CcccHHHHHHHhhCC-CCHHHHHhh
Q 024969 180 VRPFLMDVIYCWSKG-ATFAEVIQM 203 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G-~~f~~i~~~ 203 (260)
+++.+...+..|++| .|++++.+.
T Consensus 28 pd~~~l~~~erwv~GEis~~e~i~~ 52 (61)
T 3shg_B 28 PDPQVVAQMERVVVGELETSDVIKD 52 (61)
T ss_dssp CCHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHH
Confidence 557899999999999 599888753
No 102
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=37.56 E-value=66 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3479999999999999999999999876
No 103
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.21 E-value=48 Score=24.12 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.1
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444433 35689999999999999999999999875
No 104
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=36.70 E-value=19 Score=26.92 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..++..+.+-|.+.||.+
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4579999999999999999999999875
No 105
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.42 E-value=66 Score=24.91 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=36.7
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 225 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql 225 (260)
+.+.--.++.. ...|.|..+|-+..++++|.+=+.+.|...-|++.
T Consensus 141 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44444455544 57999999999999999999999999988887763
No 106
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.98 E-value=48 Score=24.85 Aligned_cols=31 Identities=6% Similarity=0.163 Sum_probs=26.8
Q ss_pred Hhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 190 CWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 190 ~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
-|. .|.+..+|.+..++..+.+-|.+.+|.+
T Consensus 52 l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 52 LVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp HSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344 4579999999999999999999999876
No 107
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=35.86 E-value=24 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHhCCCCCC---CccchhhHHHhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD---GVVQLKGRAACLI 97 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~---~~~t~kGrva~eI 97 (260)
.+.+.+.++.|++.|||... ..+|.||+-+-+.
T Consensus 34 ~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 34 YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHH
Confidence 46899999999999999752 3799999966443
No 108
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.43 E-value=1.3e+02 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=29.4
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+++-|.+.||.+
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444433 35689999999999999999999999865
No 109
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=35.37 E-value=73 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.9
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+...++..-.|.+-.+|.+..+++.+++-|.+.||++
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 34444444345567799999999999999999999875
No 110
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.31 E-value=87 Score=23.20 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=29.4
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 41 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 41 FVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35679999999999999999999999876
No 111
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.71 E-value=63 Score=23.96 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.8
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.++||.+
T Consensus 44 ~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 44 AILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444432 24679999999999999999999999875
No 112
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.20 E-value=53 Score=24.94 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 160 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
......+|+..+. +.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 43 ~~~~~~~glt~~q---------~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 43 NQALASEKLPTPK---------LRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp HHHHHHHTCCHHH---------HHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHH---------HHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444566764331 344444443 35789999999999999999999999875
No 113
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=34.06 E-value=1.1e+02 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=29.4
Q ss_pred cHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa-~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++ |. .|.+..+|.+..++..+.+-|.+.+|.+
T Consensus 51 ~iL~~L~-~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 51 DAMAQLA-RNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp HHHHHHH-HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4444442 33 4689999999999999999999999876
No 114
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=33.99 E-value=36 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHhh-C-CCCHHHHHhhcCCCcchHHHHHHHHH
Q 024969 186 DVIYCWS-K-GATFAEVIQMTDIFEGSIIRSARRLD 219 (260)
Q Consensus 186 ~vv~~Wa-~-G~~f~~i~~~t~l~EGdiVR~~rRl~ 219 (260)
.+|..+. . |.|..+|+...++..++|-||+++..
T Consensus 13 ~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 13 DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3444443 4 89999999999999999999988754
No 115
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=33.88 E-value=48 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 185 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 185 ~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
..++..+..|.|..+|.+..++...+|-||++|-.+
T Consensus 39 ~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455566678999999999999999999999988653
No 116
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.81 E-value=95 Score=19.99 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHhHhC
Q 024969 39 FQRKAEVNHEIQQLKSKMRDSQIQK---FRDELKNRSRVLKKLG 79 (260)
Q Consensus 39 ~~~~~~l~~~~~~l~~~i~~~~~~~---~~~e~~~~~~vL~~lg 79 (260)
.++...|+.+--.+++++++ .+.. +-.+=.+|+.||++++
T Consensus 9 ~~QVe~Lk~ENshLrrEL~d-NS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELED-NSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHh-hHHHHHHHHhhhhhHHHHHHHHc
Confidence 44455666777777788877 3332 2245567888888774
No 117
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=33.77 E-value=91 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.101 Sum_probs=30.1
Q ss_pred ccHHHHHHHhhC--CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSK--GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~--G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.++.+++.--. |.+..+|.+..++..+.+-|.+.||.+
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555544322 389999999999999999999999876
No 118
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=33.02 E-value=52 Score=24.28 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDEF 221 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~el 221 (260)
.|.+..+|.+..++..+.+-|.+++|.+-
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 46899999999999999999999999863
No 119
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.90 E-value=43 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=25.6
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..++..+.+-|.++||.+
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4579999999999999999999999886
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.05 E-value=34 Score=25.29 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 185 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 185 ~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
..++..+..|.|..+|.+..+++..+|-|+++|-
T Consensus 13 ~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 13 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4556666789999999999999999988888763
No 121
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.81 E-value=85 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=29.4
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++.+++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 52 ~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 52 HILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp HHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34443432 36789999999999999999999999875
No 122
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=31.66 E-value=87 Score=24.94 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=36.5
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 225 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql 225 (260)
+.+.--.|+.. +..|.|+.+|-+..++++|.+=+.+.|...-|++.
T Consensus 188 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444444 47999999999999999999998888888888764
No 123
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=31.37 E-value=63 Score=23.37 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=26.4
Q ss_pred hCCCCHHHHHhhc-CCCcchHHHHHHHHHH
Q 024969 192 SKGATFAEVIQMT-DIFEGSIIRSARRLDE 220 (260)
Q Consensus 192 a~G~~f~~i~~~t-~l~EGdiVR~~rRl~e 220 (260)
..+.++.+|.+.. +++.+.+-+.++||++
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999876
No 124
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.31 E-value=62 Score=22.30 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=34.5
Q ss_pred CcccHHHHHHHh-h----CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCW-S----KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 224 (260)
Q Consensus 180 ~~~~l~~vv~~W-a----~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrq 224 (260)
+++.--.|+..- . .|.|+.+|-+..++++|.+=..+.|...-|++
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444444555443 3 89999999999999999998888888777764
No 125
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=31.15 E-value=1.5e+02 Score=21.50 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q 024969 7 EVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLK 76 (260)
Q Consensus 7 ~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~ 76 (260)
+..++..++.++...+.+ ...- .+.+..++-++-.++..+++.+.+++.. ....|+..+.-|+
T Consensus 24 ~~~~lk~E~~~lk~E~~s--tSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~-----~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNS--ISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS-----ENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHTT--SCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 445566666666665543 2223 6666666666666666777777766666 3455666555544
No 126
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.02 E-value=31 Score=21.42 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCcchHHHHHHH
Q 024969 186 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARR 217 (260)
Q Consensus 186 ~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rR 217 (260)
.+...+..|.|..+|.+..+++..++=|.+++
T Consensus 23 ~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 33334689999999999999999998887653
No 127
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.88 E-value=48 Score=25.09 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=28.8
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.++..++. ..|.+..+|.+..++..+.+-|.+.||.+
T Consensus 56 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 56 RALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34444433 24579999999999999999999999875
No 128
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=30.77 E-value=35 Score=25.24 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhHhCCCCCC----------CccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhh
Q 024969 65 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 129 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~----------~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~ 129 (260)
.+...++++-|++.|||... -.+|.+|+....-.... .-...-.....|.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~e~~~l~~~l 138 (146)
T 3tgn_A 65 QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHH-HEHTLLTYEQVATQFTPNEQKVIQRFL 138 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHH-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35677899999999999541 25999998876544200 012233345566778888887765543
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.49 E-value=68 Score=27.13 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHhhC---CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 184 LMDVIYCWSK---GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 184 l~~vv~~Wa~---G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.-+.+-|-+ |.+..+|.+...+..|++.|.+.||++
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3444566753 689999999999999999999999975
No 130
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.25 E-value=44 Score=25.78 Aligned_cols=46 Identities=20% Similarity=0.058 Sum_probs=36.9
Q ss_pred CcccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 225 (260)
Q Consensus 180 ~~~~l~~vv~~-Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql 225 (260)
+.+.--.++.. +..|.|+.+|-+..++++|.+=+.+.|...-|++.
T Consensus 136 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 44444455544 57999999999999999999999999988888763
No 131
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=30.12 E-value=39 Score=28.98 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhCCCCCCCccchhhHHHhhhc
Q 024969 67 ELKNRSRVLKKLGHINADGVVQLKGRAACLID 98 (260)
Q Consensus 67 e~~~~~~vL~~lgyid~~~~~t~kGrva~eI~ 98 (260)
+=.+++.+|..+|.|+.|+.++..=..|++.+
T Consensus 210 ~~eqR~~~L~~~gil~~n~~~~~~v~~aA~~~ 241 (245)
T 3ov9_A 210 SHEKRREFLKAFGLVDSNGKPSAAVMAAAQAY 241 (245)
T ss_dssp CHHHHHHHHHHTTSBCTTSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCccCCCCCCcHHHHHHHHHH
Confidence 33568999999999999999998777777764
No 132
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=29.10 E-value=50 Score=22.94 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCCHHHHHhhcCCCcch-HHHHHHHHHHH
Q 024969 194 GATFAEVIQMTDIFEGS-IIRSARRLDEF 221 (260)
Q Consensus 194 G~~f~~i~~~t~l~EGd-iVR~~rRl~el 221 (260)
|.+..+|.+..++..++ +-|.+.+|.+-
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 58999999999999999 99999998763
No 133
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=28.19 E-value=74 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.2
Q ss_pred hhCCCCHHHHHhhc-CCCcchHHHHHHHHHH
Q 024969 191 WSKGATFAEVIQMT-DIFEGSIIRSARRLDE 220 (260)
Q Consensus 191 Wa~G~~f~~i~~~t-~l~EGdiVR~~rRl~e 220 (260)
+..+.+|.+|.+.. +++.+.+-+.+++|.+
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33458999999998 9999999999999876
No 134
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=28.10 E-value=1e+02 Score=22.88 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=36.8
Q ss_pred cccHHHHHHHhhCCCCHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHH
Q 024969 181 RPFLMDVIYCWSKGATFAEVIQMT-DIFEGSIIRSARRLDEFLNQLRA 227 (260)
Q Consensus 181 ~~~l~~vv~~Wa~G~~f~~i~~~t-~l~EGdiVR~~rRl~elLrql~~ 227 (260)
+-..-.++..|+.|.|..+|++.. ++...||.-++.=-.+...+|..
T Consensus 51 RI~V~~Il~~l~~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eId~ 98 (106)
T 2ga1_A 51 RIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDR 98 (106)
T ss_dssp CCBHHHHHHHHHTTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHHHH
T ss_pred eeeHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 446677888889999999999998 99999988877665555555543
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.61 E-value=74 Score=22.35 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=36.8
Q ss_pred CcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 024969 180 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 222 (260)
Q Consensus 180 ~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elL 222 (260)
+.+.=.+|+...+.|.|..+|-+..+++++++=..++|+..-|
T Consensus 30 Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 30 LTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 6677788888899999999999999999999888887775444
No 136
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.42 E-value=1.5e+02 Score=20.35 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024969 2 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 58 (260)
Q Consensus 2 ~i~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 58 (260)
+-.|+.|.++..+-.+|...+..---....-..--++-.++-.|+.++..+-.+...
T Consensus 13 k~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 13 KANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446778888888777777777544333331124444555666677777666655544
No 137
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=27.17 E-value=42 Score=23.48 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=24.6
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 195 ATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 195 ~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+..+|.+..++..+++-|.+.+|.+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999976
No 138
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=26.30 E-value=56 Score=29.70 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHhhC---CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 185 MDVIYCWSK---GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 185 ~~vv~~Wa~---G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.-+.+.|-+ |.+..+|.+...+..|++.|.+.||++
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334555755 589999999999999999999999975
No 139
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=26.29 E-value=1.2e+02 Score=22.17 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024969 6 PEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRD 58 (260)
Q Consensus 6 ~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 58 (260)
.+..++..++.++...+.+-.. - .|.+..++-++..++..+++.+.+++..
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSa--QDEFAKWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISA--QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT--TTCHHHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776653222 2 4444444444444444444444444444
No 140
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.28 E-value=61 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.7
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 5679999999999999999999999876
No 141
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=26.21 E-value=87 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 195 ATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 195 ~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
-|..+|.+.++++++++.|.+++|++
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999999999986
No 142
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=25.28 E-value=72 Score=23.43 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 187 VIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 187 vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
+.+-|..|.+..+|.+..+++.+.+-|.+.||.+
T Consensus 44 L~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 44 LMLLSEESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp HHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455777899999999999999999999999874
No 143
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=25.10 E-value=58 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=25.2
Q ss_pred hhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 191 WSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 191 Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
.....|..++-+.+++++-+|+|.++++
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4467899999999999999999999987
No 144
>4gyt_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, predicted legionella effector; 2.05A {Legionella pneumophila subsp}
Probab=23.99 E-value=27 Score=28.51 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=30.4
Q ss_pred ccHHHHHHHhhCCC--CHHHHH-hhcCCCcchHHHHHHHHHHHHHHHHHHHhhc----C-CHHHHHHHHHHHHhhc
Q 024969 182 PFLMDVIYCWSKGA--TFAEVI-QMTDIFEGSIIRSARRLDEFLNQLRAAAQAV----G-EVNLEKKFAAASESLR 249 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~--~f~~i~-~~t~l~EGdiVR~~rRl~elLrql~~a~~~i----g-~~~L~~k~~~a~~~i~ 249 (260)
..-+..+..||+|- -|.-.- .......++ +.|+++.+..++++= . +.+..+-+.+.++-+|
T Consensus 102 ~eR~~aL~~Wc~GFL~G~gl~~~~~~~~~~~e-------~~E~l~dl~~Ia~l~~d~~dd~ee~E~~~~El~EyvR 170 (194)
T 4gyt_A 102 VTRAQAFSEWCEGFTQGLTIAGVGMEQFYEEE-------SQDALQHLMEFAELDCESLEVGEEDERALMEVSEYTR 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGCSCHH-------HHHHHHHHHHHTTCCTTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCHH-------HHHHHHHHHHHHhccCcccCcCcccHHHHHHHHHHHH
Confidence 34466788999984 222100 001111222 357777777777651 1 2444455555555443
No 145
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=23.67 E-value=58 Score=22.65 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=25.2
Q ss_pred CCCCHHHH----HhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEV----IQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i----~~~t~l~EGdiVR~~rRl~e 220 (260)
.|.+..+| .+..++..+.+-|.+++|++
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45899999 78899999999999999987
No 146
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.55 E-value=1.5e+02 Score=18.79 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHhCCCCCCCccchhhHHHhhhccCChHHHHHHHhhCC
Q 024969 66 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGT 113 (260)
Q Consensus 66 ~e~~~~~~vL~~lgyid~~~~~t~kGrva~eI~~~~eLlltEll~~g~ 113 (260)
+.|...+.-|..+||.|.+ .-+.|=.....|-=-.+|.|++|.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINRE-----ANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5788899999999998753 233444455556667788888764
No 147
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=23.28 E-value=2.3e+02 Score=20.97 Aligned_cols=37 Identities=0% Similarity=0.087 Sum_probs=30.0
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
+.-......|.+|.|+.+|-+.-++..++|..-+-++
T Consensus 20 ~t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~ 56 (122)
T 3iuo_A 20 KMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETI 56 (122)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455667778999999999999999999888776665
No 148
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=22.79 E-value=46 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=24.5
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHH
Q 024969 192 SKGATFAEVIQMTDIFEGSIIRSARRL 218 (260)
Q Consensus 192 a~G~~f~~i~~~t~l~EGdiVR~~rRl 218 (260)
....|..++-+.+++++.+|+|.++++
T Consensus 37 ~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 357899999999999999999999987
No 149
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=22.35 E-value=89 Score=22.46 Aligned_cols=36 Identities=6% Similarity=0.150 Sum_probs=30.1
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 183 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 183 ~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+...+.. .+.++.++.+..+++.+.+-|.+++|.+
T Consensus 36 ~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 36 MILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444443 5789999999999999999999999988
No 150
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.26 E-value=1.5e+02 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=23.7
Q ss_pred CCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 195 ATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 195 ~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+..+|.+...+..+++.|.+.||+.
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 68999999999999999999999975
No 151
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=22.18 E-value=63 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=25.6
Q ss_pred hhC-CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 191 WSK-GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 191 Wa~-G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
|.. +.+..+|.+..+++.+.+-|.+++|.+
T Consensus 34 ~~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444 579999999999999999999888864
No 152
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=22.16 E-value=58 Score=20.66 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=28.2
Q ss_pred hhCCCC----HHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 024969 191 WSKGAT----FAEVIQMTDIFEGSIIRSARRLDEFLNQL 225 (260)
Q Consensus 191 Wa~G~~----f~~i~~~t~l~EGdiVR~~rRl~elLrql 225 (260)
...|.| ..+|....++..+.+=+|+++..++-..+
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~ 56 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSV 56 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 346778 99999999999999999988877666555
No 153
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=22.15 E-value=1.3e+02 Score=21.79 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=19.1
Q ss_pred hhCCCCCCCHHHHHHHhhhhcccc
Q 024969 110 FNGTFNDLDHHQVAALASCFIPVD 133 (260)
Q Consensus 110 ~~g~f~~L~p~elaallS~~v~e~ 133 (260)
+.+.++++|..|+.+++.-+....
T Consensus 3 ~k~~i~DyTe~Efi~lv~~I~~~~ 26 (94)
T 3u43_A 3 LKHSISDYTEAEFLEFVKKICRAE 26 (94)
T ss_dssp CCSSGGGSBHHHHHHHHHHHHHTC
T ss_pred cchhhhhcCHHHHHHHHHHHHhcC
Confidence 345688999999999999887643
No 154
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.01 E-value=92 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=29.7
Q ss_pred HHHHHHHhh---CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 184 LMDVIYCWS---KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 184 l~~vv~~Wa---~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
++=.-+-|. .|.+-.+|.+.++++-+.+-|+++||++
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344553 3789999999999999999999999975
No 155
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=21.94 E-value=1.6e+02 Score=18.75 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024969 37 RCFQRKAEVNHEIQQLKSKMRD 58 (260)
Q Consensus 37 ~~~~~~~~l~~~~~~l~~~i~~ 58 (260)
++..+..+|.++|+.|+++-.+
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~ 24 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQ 24 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999888777
No 156
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=21.79 E-value=38 Score=21.22 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=8.2
Q ss_pred chHHHHHHHH
Q 024969 209 GSIIRSARRL 218 (260)
Q Consensus 209 GdiVR~~rRl 218 (260)
+||||.|||.
T Consensus 4 ~Diir~irr~ 13 (46)
T 2imu_A 4 KDIIRAIRRI 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6888888886
No 157
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=21.70 E-value=1.1e+02 Score=23.29 Aligned_cols=27 Identities=11% Similarity=-0.096 Sum_probs=24.3
Q ss_pred CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 194 GATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 194 G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
|-|..+|-+.++++++++.|++.+|++
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358899999999999999999999876
No 158
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.39 E-value=2e+02 Score=19.48 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024969 6 PEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMR 57 (260)
Q Consensus 6 ~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~ 57 (260)
.++.++..++..+...+.+-.. - .|.+..++-++..++..+++.+.+++.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSa--QDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISA--QDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT--TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777776663322 2 444444444444444444444444443
No 159
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=21.01 E-value=44 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=25.6
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 024969 193 KGATFAEVIQMTDIFEGSIIRSARRLDE 220 (260)
Q Consensus 193 ~G~~f~~i~~~t~l~EGdiVR~~rRl~e 220 (260)
.+.++.+|.+..+++.+.+-|.+++|.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5689999999999999999999999876
No 160
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=20.98 E-value=51 Score=27.94 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhHhCCCCCC-----CccchhhHHHhhhccCChHH
Q 024969 65 RDELKNRSRVLKKLGHINAD-----GVVQLKGRAACLIDTGDELL 104 (260)
Q Consensus 65 ~~e~~~~~~vL~~lgyid~~-----~~~t~kGrva~eI~~~~eLl 104 (260)
.+...++++-|++.|||... ..+|.+|+...++...-.+|
T Consensus 180 ksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~~~~w 224 (244)
T 2wte_A 180 EKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKSVIES 224 (244)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhccccc
Confidence 35667899999999999763 46899999988776654444
No 161
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=20.85 E-value=46 Score=22.47 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=27.8
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcC----CCcchHHHHHHHHHH
Q 024969 182 PFLMDVIYCWSKGATFAEVIQMTD----IFEGSIIRSARRLDE 220 (260)
Q Consensus 182 ~~l~~vv~~Wa~G~~f~~i~~~t~----l~EGdiVR~~rRl~e 220 (260)
...+.+++. ..+.+..+|.+..+ +..+++-|.+.||.+
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 455555543 33478899988764 788999999999876
No 162
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.78 E-value=1e+02 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.0
Q ss_pred hhC-CCCHHHHHhhcCCCcchHHHHHHHHHHH
Q 024969 191 WSK-GATFAEVIQMTDIFEGSIIRSARRLDEF 221 (260)
Q Consensus 191 Wa~-G~~f~~i~~~t~l~EGdiVR~~rRl~el 221 (260)
|.. |.+..+|.+..++..+.+-|.+.||.+-
T Consensus 50 ~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 433 5899999999999999999999999863
No 163
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=20.29 E-value=2e+02 Score=26.02 Aligned_cols=84 Identities=8% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCccc
Q 024969 104 LVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF 183 (260)
Q Consensus 104 lltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 183 (260)
++...+--+-..+-....|+.+++.+...... ....-.+.....+.++..+..= ++..
T Consensus 249 II~dIl~LeDISE~eS~~La~Li~~l~~l~~l-P~l~~i~~Yv~~W~Kf~~L~~I---------------------L~ss 306 (357)
T 3k8p_C 249 VIDNILHWRVISEKSSENLSEFIMLLLSGLEI-PRLNLIETYRHSREKLGILSKI---------------------LTAH 306 (357)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHHTCC-GGGTTCHHHHHHHHHHHHHHHH---------------------HTCC
T ss_pred HHHHHcCcccCCHHHHHHHHHHHHHHHcCCCC-cccccHHHHHHHHHHHHHHHHH---------------------HHhh
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHH
Q 024969 184 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 216 (260)
Q Consensus 184 l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~r 216 (260)
|.++++.|+.|. .++....-+|.+||
T Consensus 307 LkDI~~lW~eGe-------L~~FstdEVv~LIr 332 (357)
T 3k8p_C 307 LKDILEMFYEGE-------FFLFETDEIVQWII 332 (357)
T ss_dssp HHHHHHHHHTTG-------GGGSCHHHHHHHHH
T ss_pred HHHHHHHHhcCC-------cceecHHHHHHHHH
No 164
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.16 E-value=1.4e+02 Score=19.96 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHcCCCCChhhhhhccCcccHHHHHHHhh-CCCCHHHHHhhc-----CCCcchHHHHHHHHHH
Q 024969 163 QNECKLEVNVDEYVESTVRPFLMDVIYCWS-KGATFAEVIQMT-----DIFEGSIIRSARRLDE 220 (260)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa-~G~~f~~i~~~t-----~l~EGdiVR~~rRl~e 220 (260)
.+++|+..++ -...+.+++..-- ...|..+|.+.. +++..++=|.+..|.+
T Consensus 8 l~~~g~~~t~-------~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 8 LKKAGLKVTL-------PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHTTCCCCH-------HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcCH-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 4567776664 2234555443322 457999999987 8888888887777654
Done!