Query 024970
Match_columns 260
No_of_seqs 146 out of 638
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 4.4E-61 9.5E-66 434.4 8.6 248 12-259 14-264 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 5.8E-58 1.3E-62 419.7 20.5 247 13-259 1-250 (300)
3 COG2510 Predicted membrane pro 99.2 1.5E-10 3.3E-15 93.2 8.5 112 21-133 5-138 (140)
4 PRK02971 4-amino-4-deoxy-L-ara 98.8 3.3E-08 7.2E-13 80.4 9.4 116 19-134 2-122 (129)
5 PF10639 UPF0546: Uncharacteri 98.6 9.7E-08 2.1E-12 75.9 6.2 106 28-133 5-113 (113)
6 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.2E-07 9E-12 72.0 9.8 101 23-132 5-107 (111)
7 PF13536 EmrE: Multidrug resis 98.4 1.1E-06 2.4E-11 69.2 8.0 69 68-137 41-109 (113)
8 TIGR03340 phn_DUF6 phosphonate 98.4 1.7E-05 3.7E-10 71.7 16.8 114 21-134 3-135 (281)
9 PRK10532 threonine and homoser 98.1 1.5E-05 3.3E-10 72.6 9.3 125 17-141 146-288 (293)
10 TIGR00950 2A78 Carboxylate/Ami 97.9 0.0001 2.2E-09 65.1 11.0 114 16-129 125-259 (260)
11 TIGR00950 2A78 Carboxylate/Ami 97.9 0.00033 7.2E-09 61.8 14.0 68 67-134 52-119 (260)
12 PRK11453 O-acetylserine/cystei 97.9 0.00048 1E-08 62.8 15.3 113 22-134 7-132 (299)
13 TIGR00688 rarD rarD protein. T 97.9 0.00057 1.2E-08 60.7 15.0 62 72-133 80-141 (256)
14 PLN00411 nodulin MtN21 family 97.8 0.00011 2.3E-09 69.5 9.5 125 16-140 186-334 (358)
15 PRK11689 aromatic amino acid e 97.8 0.0042 9.2E-08 56.6 19.2 115 21-135 6-138 (295)
16 PRK10452 multidrug efflux syst 97.7 0.00032 6.8E-09 56.5 9.6 75 65-139 33-108 (120)
17 PRK09541 emrE multidrug efflux 97.7 0.00038 8.3E-09 55.1 9.5 77 61-137 28-106 (110)
18 TIGR03340 phn_DUF6 phosphonate 97.6 0.0002 4.4E-09 64.7 7.9 113 19-131 144-280 (281)
19 PF00892 EamA: EamA-like trans 97.6 5.3E-05 1.2E-09 58.6 3.6 66 67-132 59-124 (126)
20 PRK15430 putative chlorampheni 97.6 0.00017 3.6E-09 65.8 6.8 119 14-133 3-144 (296)
21 PRK11453 O-acetylserine/cystei 97.6 0.00069 1.5E-08 61.8 10.6 116 18-133 142-286 (299)
22 PRK11272 putative DMT superfam 97.5 0.00046 1E-08 62.7 9.3 118 17-134 148-285 (292)
23 PRK11689 aromatic amino acid e 97.5 0.00036 7.9E-09 63.6 8.5 114 18-132 155-285 (295)
24 PF06027 DUF914: Eukaryotic pr 97.5 0.0015 3.2E-08 61.3 11.9 78 59-136 74-153 (334)
25 PF04142 Nuc_sug_transp: Nucle 97.2 0.0016 3.4E-08 58.5 8.1 73 67-139 22-94 (244)
26 PRK11272 putative DMT superfam 97.1 0.0071 1.5E-07 54.9 12.2 66 67-133 74-140 (292)
27 COG0697 RhaT Permeases of the 97.1 0.0047 1E-07 54.4 9.8 117 17-134 152-287 (292)
28 PF00893 Multi_Drug_Res: Small 97.0 0.0043 9.3E-08 47.4 8.0 65 61-125 27-93 (93)
29 PF08449 UAA: UAA transporter 97.0 0.018 4E-07 52.6 13.1 77 65-142 68-144 (303)
30 PRK10650 multidrug efflux syst 96.9 0.016 3.5E-07 45.8 10.7 72 61-132 33-106 (109)
31 PRK15430 putative chlorampheni 96.9 0.0044 9.6E-08 56.5 8.4 62 73-134 224-285 (296)
32 TIGR00817 tpt Tpt phosphate/ph 96.9 0.0052 1.1E-07 55.9 8.6 65 67-132 71-135 (302)
33 TIGR00776 RhaT RhaT L-rhamnose 96.8 0.0092 2E-07 54.5 9.6 75 62-136 56-138 (290)
34 PRK11431 multidrug efflux syst 96.7 0.021 4.5E-07 44.9 9.6 72 61-132 27-100 (105)
35 COG0697 RhaT Permeases of the 96.6 0.012 2.5E-07 51.9 9.0 74 67-140 75-149 (292)
36 PRK10532 threonine and homoser 96.5 0.091 2E-06 47.8 14.2 112 16-134 9-137 (293)
37 COG2076 EmrE Membrane transpor 96.3 0.039 8.4E-07 43.4 8.7 72 61-132 28-101 (106)
38 KOG4510 Permease of the drug/m 96.2 0.0035 7.7E-08 57.0 3.1 115 17-133 36-168 (346)
39 PTZ00343 triose or hexose phos 96.2 0.021 4.5E-07 53.6 8.1 59 75-133 127-185 (350)
40 PF06027 DUF914: Eukaryotic pr 96.1 0.088 1.9E-06 49.5 11.9 138 2-141 152-312 (334)
41 TIGR00776 RhaT RhaT L-rhamnose 96.0 0.024 5.1E-07 51.8 7.6 115 17-133 150-287 (290)
42 PF06800 Sugar_transport: Suga 95.9 0.32 7E-06 44.4 14.4 80 63-142 43-130 (269)
43 TIGR00817 tpt Tpt phosphate/ph 95.8 0.022 4.8E-07 51.8 6.3 117 16-132 142-291 (302)
44 KOG3912 Predicted integral mem 95.8 0.085 1.9E-06 48.5 9.8 121 15-135 37-159 (372)
45 PF03151 TPT: Triose-phosphate 95.6 0.13 2.8E-06 41.5 9.6 112 20-131 1-150 (153)
46 PLN00411 nodulin MtN21 family 95.2 0.11 2.4E-06 49.1 9.0 60 75-134 91-156 (358)
47 COG5006 rhtA Threonine/homoser 95.0 0.27 5.8E-06 44.6 10.1 123 15-139 144-287 (292)
48 KOG2765 Predicted membrane pro 94.9 0.074 1.6E-06 50.5 6.8 83 80-162 177-264 (416)
49 PRK13499 rhamnose-proton sympo 93.5 0.14 2.9E-06 48.4 5.5 127 13-140 1-159 (345)
50 KOG2234 Predicted UDP-galactos 92.7 0.54 1.2E-05 44.3 8.0 77 65-141 95-171 (345)
51 PF08449 UAA: UAA transporter 92.6 0.87 1.9E-05 41.6 9.3 120 12-131 147-294 (303)
52 TIGR00803 nst UDP-galactose tr 92.4 0.76 1.7E-05 39.8 8.3 117 15-131 81-221 (222)
53 PTZ00343 triose or hexose phos 92.0 1.3 2.9E-05 41.4 9.9 50 82-131 296-345 (350)
54 COG1742 Uncharacterized conser 91.7 0.7 1.5E-05 36.3 6.3 66 71-139 42-108 (109)
55 COG2962 RarD Predicted permeas 91.4 0.55 1.2E-05 43.2 6.3 118 18-136 6-146 (293)
56 KOG4831 Unnamed protein [Funct 88.6 1.2 2.5E-05 35.3 5.2 77 56-133 46-124 (125)
57 PF06800 Sugar_transport: Suga 88.5 0.95 2.1E-05 41.4 5.4 60 72-131 205-268 (269)
58 KOG2765 Predicted membrane pro 87.3 3.3 7.1E-05 39.6 8.4 132 6-137 232-393 (416)
59 PRK02237 hypothetical protein; 85.6 3.7 8E-05 32.5 6.5 47 91-138 62-108 (109)
60 KOG1583 UDP-N-acetylglucosamin 81.6 3.1 6.8E-05 38.4 5.3 80 63-142 65-145 (330)
61 PF04142 Nuc_sug_transp: Nucle 80.2 20 0.00043 32.0 10.1 111 14-124 109-243 (244)
62 PF02694 UPF0060: Uncharacteri 78.1 2.8 6.1E-05 33.0 3.4 45 92-137 61-105 (107)
63 COG3169 Uncharacterized protei 75.3 3.3 7.2E-05 32.3 3.0 36 96-131 77-112 (116)
64 KOG4510 Permease of the drug/m 75.2 2 4.3E-05 39.5 2.1 130 3-134 176-325 (346)
65 KOG2766 Predicted membrane pro 74.3 1.2 2.5E-05 40.8 0.4 65 75-139 91-155 (336)
66 PF04342 DUF486: Protein of un 67.9 5.6 0.00012 31.3 2.9 35 97-131 71-105 (108)
67 PF12263 DUF3611: Protein of u 65.2 54 0.0012 28.3 8.7 51 59-109 103-169 (183)
68 KOG4314 Predicted carbohydrate 56.6 23 0.00051 31.3 5.0 61 76-136 67-127 (290)
69 KOG1441 Glucose-6-phosphate/ph 53.6 4.9 0.00011 37.6 0.3 62 73-134 94-155 (316)
70 PF05653 Mg_trans_NIPA: Magnes 52.0 59 0.0013 30.0 7.2 82 58-139 205-297 (300)
71 KOG1581 UDP-galactose transpor 49.2 1.8E+02 0.0038 27.4 9.7 67 73-139 94-160 (327)
72 KOG1583 UDP-N-acetylglucosamin 48.5 41 0.00088 31.3 5.3 34 100-133 280-313 (330)
73 PF04657 DUF606: Protein of un 45.3 1.6E+02 0.0036 23.8 8.2 34 98-131 101-138 (138)
74 COG4975 GlcU Putative glucose 43.7 21 0.00045 32.6 2.7 90 60-149 54-151 (288)
75 PRK13499 rhamnose-proton sympo 43.4 70 0.0015 30.3 6.4 39 96-135 298-342 (345)
76 COG2245 Predicted membrane pro 41.6 1.4E+02 0.0031 25.6 7.2 42 6-47 86-129 (182)
77 KOG1580 UDP-galactose transpor 39.7 27 0.00058 31.8 2.8 39 99-137 278-316 (337)
78 COG4975 GlcU Putative glucose 37.8 20 0.00043 32.7 1.6 42 93-134 240-285 (288)
79 PF12273 RCR: Chitin synthesis 30.6 34 0.00073 27.4 1.8 10 169-178 16-25 (130)
80 PF10361 DUF2434: Protein of u 29.3 1.9E+02 0.0042 26.8 6.6 67 12-83 42-109 (296)
81 KOG1442 GDP-fucose transporter 29.3 28 0.00061 32.3 1.2 58 73-130 113-170 (347)
82 PF06570 DUF1129: Protein of u 27.0 3.5E+02 0.0077 23.2 7.7 35 83-117 167-204 (206)
83 PF04211 MtrC: Tetrahydrometha 26.0 2.8E+02 0.0062 25.3 6.9 127 67-195 75-213 (262)
84 TIGR00688 rarD rarD protein. T 21.3 1.9E+02 0.0041 25.2 5.0 38 72-109 218-255 (256)
85 PF01788 PsbJ: PsbJ; InterPro 20.7 1.5E+02 0.0033 19.2 3.1 11 61-71 7-17 (40)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-61 Score=434.41 Aligned_cols=248 Identities=70% Similarity=1.163 Sum_probs=239.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhh
Q 024970 12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILV 91 (260)
Q Consensus 12 ~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV 91 (260)
+|++++++|+.+|+.|+++++.++++|||+++|....+.|++++..+|++.|+||.|+++|++|+++||+||+|||++||
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLV 93 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLV 93 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhh
Confidence 67999999999999999999999999999999887767788888899999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccccCCHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 024970 92 TPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFIL 171 (260)
Q Consensus 92 ~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~~t~~~l~~~~~~~~f~~y~~~~~v~~~~l 171 (260)
+|||++|+++|+++|+++||||++..+.+||++|++|++++|.|+|+|++..|++|+++++++|+|++|+.+.+++.+++
T Consensus 94 tPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il 173 (335)
T KOG2922|consen 94 TPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLIL 173 (335)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhheeccCccceeEeeeeecchhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 024970 172 IFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSL 251 (260)
Q Consensus 172 ~~~~~~r~g~~~~l~y~~i~gl~g~~tvl~~K~~~~~l~~t~~g~~~~~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~~~~ 251 (260)
+++..||+|++|+++|+++|+++|++||+++|+++.+++++++|+||+.+|+||+++++++.|+++|++|||||||+||+
T Consensus 174 ~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnt 253 (335)
T KOG2922|consen 174 IFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNT 253 (335)
T ss_pred heeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c---eeeeeee
Q 024970 252 F---YLFLVFI 259 (260)
Q Consensus 252 ~---~~~~~~~ 259 (260)
. |+++++|
T Consensus 254 slV~PiyyV~f 264 (335)
T KOG2922|consen 254 SIVSPIYYVMF 264 (335)
T ss_pred hhcchhHHHHH
Confidence 4 6666665
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=5.8e-58 Score=419.72 Aligned_cols=247 Identities=45% Similarity=0.792 Sum_probs=233.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 024970 13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT 92 (260)
Q Consensus 13 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~ 92 (260)
|.+++++|+.+|++||++++.|+++|||+++|+++++.|.+.+.++|+|||+||.|+.+|++|+++|++||+|+|+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 46789999999999999999999999999988887555554566799999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccccCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 024970 93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILI 172 (260)
Q Consensus 93 Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~~t~~~l~~~~~~~~f~~y~~~~~v~~~~l~ 172 (260)
|+|++++++|+++|++++|||++++|+.|+++++.|+++++.++|++++.+|++|+++++++|+|+.|+.+..+..++++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877787
Q ss_pred HhheeccCccceeEeeeeecchhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 024970 173 FHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLF 252 (260)
Q Consensus 173 ~~~~~r~g~~~~l~y~~i~gl~g~~tvl~~K~~~~~l~~t~~g~~~~~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~~~~~ 252 (260)
++..||+|++++++|.++||++|++|++++|++++.++++++|+|||.+|.+|+++++++.|++.|++||||||++||++
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~ 240 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS 240 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---eeeeeee
Q 024970 253 ---YLFLVFI 259 (260)
Q Consensus 253 ---~~~~~~~ 259 (260)
|+++|||
T Consensus 241 ~V~P~~~v~~ 250 (300)
T PF05653_consen 241 LVVPVYYVFF 250 (300)
T ss_pred EEEeehhHHH
Confidence 7777776
No 3
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.16 E-value=1.5e-10 Score=93.22 Aligned_cols=112 Identities=26% Similarity=0.349 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc-------------C--CccccccchhHH----HHHHHHHHHHHH
Q 024970 21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG-------------F--GGYSYLYEPLWW----VGMITMVVGEIA 78 (260)
Q Consensus 21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~-------------~--~~~~~l~~~~W~----~G~~~~~~g~~~ 78 (260)
...|++||++.+++.++-|-|.+..+.+ -.|+- . +...-...+.|. .| +.-.+|+.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~ 83 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHH
Confidence 4789999999999999999998765432 13330 0 011112333343 45 445789999
Q ss_pred HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
.|.|+.-++++.|+|+...|+++..+++..++|||++..+|+|+.|+++|++++.
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999998764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.80 E-value=3.3e-08 Score=80.40 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccC-Cccccccch--hHHHHHHHHHHHHHHHHHHHhhccchhhhcch
Q 024970 19 KGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGF-GGYSYLYEP--LWWVGMITMVVGEIANFAAYAFAPAILVTPLG 95 (260)
Q Consensus 19 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~-~~~~~l~~~--~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~ 95 (260)
+|.++.+.+.++.+.|..+-|+|+++.++.+..... .......+| .-+.|+..++++..++..++...|++...|+-
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 367788899999999999999998886643211100 011223456 55689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH--HhccccccchhHHHHHHhhhheeeEe
Q 024970 96 ALSIIISAALAHI--ILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 96 ~~~lv~~~~la~~--~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
+...++..+.+.. ++||+++.+++.|+.++++|+.++..
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9988888888885 79999999999999999999988643
No 5
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.60 E-value=9.7e-08 Score=75.88 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhhhhhccCCcc--ccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hHHHHHHHH
Q 024970 28 SIFIGSSFIVKKKGLKKAGASGVR--AGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAA 104 (260)
Q Consensus 28 a~~~a~g~vlqk~~~~~~~~~~~~--~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~ 104 (260)
+++.+.+.-+.|||.+..++.... ...+....+++|+.+.++++...|++..+..++-+|.|+..|+. +++.+++++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 456677778889986654432111 11234468899999999999999999999999999999999996 999999999
Q ss_pred HHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 105 LAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 105 la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
.+.++-+|..+++.+.|+.+++.|+.+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 99777666667788999999999997753
No 6
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=4.2e-07 Score=72.00 Aligned_cols=101 Identities=11% Similarity=0.161 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHH--HHHHHHHHHHHHHHhhccchhhhcchhHHHH
Q 024970 23 LALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSII 100 (260)
Q Consensus 23 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~--~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv 100 (260)
+-+.+.++...|.+..|++.+..+.+ + ...++..+.+. ..+.++..+...++...|.+...|+-+++.+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~~~--~-------~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v 75 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVAIG--K-------RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV 75 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc--h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 34566777788888999874432211 0 11123445544 5577888999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 101 ISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
++.+++.+++|||++.+++.|+.++++|++++
T Consensus 76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 7
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.42 E-value=1.1e-06 Score=69.16 Aligned_cols=69 Identities=29% Similarity=0.410 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970 68 GMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (260)
Q Consensus 68 G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p 137 (260)
|......+..+.+.|+.+.| ..++|+.+++.+++.+++..++|||++++++.|+.++.+|++++...+.
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 44455578899999999999 6999999999999999999999999999999999999999987765443
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.42 E-value=1.7e-05 Score=71.70 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc--c----------CCcccccc--chhHH----HHHHHHHHHHHHHHH
Q 024970 21 LILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA--G----------FGGYSYLY--EPLWW----VGMITMVVGEIANFA 81 (260)
Q Consensus 21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~--~----------~~~~~~l~--~~~W~----~G~~~~~~g~~~~~~ 81 (260)
..+.+.++++.|....+.|++.++++.- .... . .......+ ++.|| .+......+..+.+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999765442210 0000 0 00001111 22222 233345566788889
Q ss_pred HHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 82 Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
++...|.+..+|+...+.++..+++..++|||+++++|.|..++..|+.++..
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987653
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.11 E-value=1.5e-05 Score=72.57 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc---cc-----------cCCccccccchh----HHHHHHHHHHHHHH
Q 024970 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---RA-----------GFGGYSYLYEPL----WWVGMITMVVGEIA 78 (260)
Q Consensus 17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~---~~-----------~~~~~~~l~~~~----W~~G~~~~~~g~~~ 78 (260)
...|.++++.++++.+...++.||..++.+.... .. ..+......... .+.|+...++++.+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999988875433221100 00 001101111122 35666667788889
Q ss_pred HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (260)
Q Consensus 79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~ 141 (260)
+..++...|.+.++++..+..+++.+++.+++||+++..+++|.++++.|+.......++|++
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999877665555444
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.94 E-value=0.0001 Score=65.09 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--c---cc------------cCCccccccchhHH----HHHHHHHH
Q 024970 16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--V---RA------------GFGGYSYLYEPLWW----VGMITMVV 74 (260)
Q Consensus 16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~---~~------------~~~~~~~l~~~~W~----~G~~~~~~ 74 (260)
....|..+++.++++.+...+.+|+..++.+.+. . +. ..+.......+.|. .|.....+
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999764433211 0 00 01111111223342 34444567
Q ss_pred HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhh
Q 024970 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGS 129 (260)
Q Consensus 75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~ 129 (260)
++.+++.++...|++.++.+..+..+++.+++..++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999986
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.92 E-value=0.00033 Score=61.76 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
.|.....++..+.+.|+.+.|.+..+++.....+++.+++..++|||++++++.|+.+.+.|+.++..
T Consensus 52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 55566678888999999999999999999999999999999999999999999999999999988653
No 12
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.91 E-value=0.00048 Score=62.82 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccC---CccccC---Cccccc-cchhH---H--HHHHHHHHHHHHHHHHHhh-ccc
Q 024970 22 ILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAGF---GGYSYL-YEPLW---W--VGMITMVVGEIANFAAYAF-APA 88 (260)
Q Consensus 22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~~---~~~~~l-~~~~W---~--~G~~~~~~g~~~~~~Al~~-ap~ 88 (260)
.+++.++++.+......|....+.+.. ..|-.- ...... +++.+ + .|+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 457788889999999999876543321 122100 000111 11111 1 2333323333455667766 477
Q ss_pred hhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 89 ILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 89 ~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
...+-+.....++..+++++++|||++++++.|+++..+|+.++..
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 7777788888899999999999999999999999999999977663
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.88 E-value=0.00057 Score=60.70 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
+..+..+.+.|+...|.+-.+-+....-++..+++++++|||+++++|.|+.+..+|+++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999997654
No 14
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.81 E-value=0.00011 Score=69.52 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc----------------cCC---cccccc-chhHHHHHHH----
Q 024970 16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA----------------GFG---GYSYLY-EPLWWVGMIT---- 71 (260)
Q Consensus 16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~----------------~~~---~~~~l~-~~~W~~G~~~---- 71 (260)
++.+|.++++.|+++.+...++||+-.++.+.....+ ..+ ...... -..+...++.
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~ 265 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII 265 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH
Confidence 4578999999999999999999998655432210000 000 000000 0111112221
Q ss_pred HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcc
Q 024970 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER 140 (260)
Q Consensus 72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~ 140 (260)
..+++.++..+....+++.++...-+..+++++++..++||+++..+++|+++++.|+.+......+|+
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 234667788888999999999999999999999999999999999999999999999988665444443
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.78 E-value=0.0042 Score=56.56 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc--------CCccccccc---hhHHHHHHHHHHHHHHHHHHHhhc
Q 024970 21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG--------FGGYSYLYE---PLWWVGMITMVVGEIANFAAYAFA 86 (260)
Q Consensus 21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~--------~~~~~~l~~---~~W~~G~~~~~~g~~~~~~Al~~a 86 (260)
.+.++.+.++.+..+...|.+....+.- ..|-. -..++..|+ +....|.+.+.....+.+.++.++
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 85 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYA 85 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888766553321 01110 000111121 112233333334445555666543
Q ss_pred ----cchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970 87 ----PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (260)
Q Consensus 87 ----p~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~ 135 (260)
|.+..+-+.....++..++++.++|||++++++.|+++..+|+.++...
T Consensus 86 ~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 86 NTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred hccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4455566677889999999999999999999999999999999877643
No 16
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.73 E-value=0.00032 Score=56.46 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 65 WWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
|+..+.++.++..+-..|+...|.++.-|+ .+++.+...+.+.+++||+++..++.|+.+++.|++.+=..+++.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 556677778888999999999999999999 579999999999999999999999999999999998775555433
No 17
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.70 E-value=0.00038 Score=55.11 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred cchhHH-HHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970 61 YEPLWW-VGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (260)
Q Consensus 61 ~~~~W~-~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p 137 (260)
+++.|. ..+..+.++..+-..|+..-|.++.-|+ .+++.+.+.+.+.++.||+++..++.|..+++.|++++=..++
T Consensus 28 ~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 28 TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345543 4555577788888889999999999999 7799999999999999999999999999999999988755443
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.62 E-value=0.0002 Score=64.68 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cc-c-c------c-C---------Ccccc-ccchhHH----HHHHHHHH
Q 024970 19 KGLILALSSSIFIGSSFIVKKKGLKKAGAS-GV-R-A------G-F---------GGYSY-LYEPLWW----VGMITMVV 74 (260)
Q Consensus 19 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~-~-~------~-~---------~~~~~-l~~~~W~----~G~~~~~~ 74 (260)
-|..+++.++++.+.+.++.|+..++.+.. .. . . . . +.... ...+.|+ .+.....+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 466788999999999988888753322211 00 0 0 0 0 00000 0111222 33344567
Q ss_pred HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
++.+++.++...|++.++++.-++.+++.+++.+++||+++..++.|..+++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888999999999999999999999999999999999999999999999999999865
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.62 E-value=5.3e-05 Score=58.58 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
.|.....++..+...++...|.+.++++..++.+++.+++..++||+++++++.|+.+++.|+.++
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455545788899999999999999999999999999999999999999999999999999998764
No 20
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.58 E-value=0.00017 Score=65.84 Aligned_cols=119 Identities=17% Similarity=0.086 Sum_probs=88.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---cccc------------CCc-cc---cccchhHH----HHHH
Q 024970 14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG---VRAG------------FGG-YS---YLYEPLWW----VGMI 70 (260)
Q Consensus 14 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~------------~~~-~~---~l~~~~W~----~G~~ 70 (260)
|++...|..+.+.++++.+...+.-|.. .+.+... .|.. ..+ .. ..++++++ .|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 4567789999999999999998888753 2211100 1110 000 00 11123322 4555
Q ss_pred HHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 71 TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 71 ~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
...++..+.+.++...|.+..+-+....-++..+++.+++|||+++++|.|+++...|+++++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999998764
No 21
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.56 E-value=0.00069 Score=61.79 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc---c---------------CCccc------cccchh-HH----HH
Q 024970 18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA---G---------------FGGYS------YLYEPL-WW----VG 68 (260)
Q Consensus 18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------------~~~~~------~l~~~~-W~----~G 68 (260)
..|..+++.++++.+...+++|+-.++.+....-. . .+... .-.++. |+ .|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 57999999999999999999998533221100000 0 00000 001222 33 34
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 69 MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 69 ~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
+...++++.+++.++.-.+..-++++..+..+++.+++.+++||+++..+++|.+++++|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 44456777888888888899999999999999999999999999999999999999999987543
No 22
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.55 E-value=0.00046 Score=62.72 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--ccc-------------cCCccccccc-hhHH----HHHHHHHHHH
Q 024970 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--VRA-------------GFGGYSYLYE-PLWW----VGMITMVVGE 76 (260)
Q Consensus 17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-------------~~~~~~~l~~-~~W~----~G~~~~~~g~ 76 (260)
...|..+++.++++.|.+.+.+||..++.+... ... ..+......+ ..|+ .|....++++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999988532211000 000 0000011111 2343 3444456778
Q ss_pred HHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 77 ~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
.+...++...|.+.+..+..+..+++.+++..++||+++..++.|+.+++.|+.+...
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999976533
No 23
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.54 E-value=0.00036 Score=63.58 Aligned_cols=114 Identities=17% Similarity=0.056 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc------------cCCccc-cccchhHH----HHHHHHHHHHHHHH
Q 024970 18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA------------GFGGYS-YLYEPLWW----VGMITMVVGEIANF 80 (260)
Q Consensus 18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~------------~~~~~~-~l~~~~W~----~G~~~~~~g~~~~~ 80 (260)
..|..+++.++++.|.+.++.||-.++.+...... -.+... ......|. .|+ ..++++.++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~ 233 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAA-AMGFGYAAWN 233 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 46999999999999999999998543321100000 000001 11112232 232 2456788899
Q ss_pred HHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 81 AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 81 ~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
.++...|++.++++.-+..+++.+++..++||+++..+++|.++++.|+.+.
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999998665
No 24
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.49 E-value=0.0015 Score=61.29 Aligned_cols=78 Identities=27% Similarity=0.448 Sum_probs=66.3
Q ss_pred cccchhHHH-HH-HHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970 59 YLYEPLWWV-GM-ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (260)
Q Consensus 59 ~l~~~~W~~-G~-~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 136 (260)
.+++|.|.- -+ ++++.+......||.+.+.+-+|=|...+++++++++.+++|||.++.+++|+.+|++|+++++...
T Consensus 74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 345555542 22 3467788889999999999999999999999999999999999999999999999999998877654
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.18 E-value=0.0016 Score=58.45 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
+=.+++.+.+.+.+.++...+.+.-|=+...-++++++++.+++|+|+++++|.+..+.++|++++-..+..+
T Consensus 22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3346789999999999999999999999999999999999999999999999999999999998876655443
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.15 E-value=0.0071 Score=54.94 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 67 VGMITMVVGEIANFAAY-AFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al-~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
.|......+..+.+.+. ...|....+-+-....++..+++.+ +|||++++++.|..+..+|+.++.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 44444445566667777 8888888888889999999999975 699999999999999999987654
No 27
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.06 E-value=0.0047 Score=54.42 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-cc------c--------cCCccccccchhHH----HHHHHHHHHHH
Q 024970 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR------A--------GFGGYSYLYEPLWW----VGMITMVVGEI 77 (260)
Q Consensus 17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~~~l~~~~W~----~G~~~~~~g~~ 77 (260)
...|..+++.++++.+...+.+|+-. +.+... .. . ..+.........|. .|.....++..
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999754 211110 10 0 00000001111122 34444456788
Q ss_pred HHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 78 ANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 78 ~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
+.+.++...|...++|+.....+++..++..+++|+++..++.|+.+++.|+.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999876543
No 28
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.03 E-value=0.0043 Score=47.41 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=36.7
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHH
Q 024970 61 YEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILC 125 (260)
Q Consensus 61 ~~~~W~~G~~-~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li 125 (260)
+++.|..+.+ .+.++..+-..|+...|.++.-|+ .+++.+...+.+..+.||+++..++.|+.++
T Consensus 27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455555544 567788888899999999999997 5699999999999999999999999999875
No 29
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.96 E-value=0.018 Score=52.62 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcccc
Q 024970 65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREI 142 (260)
Q Consensus 65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~ 142 (260)
+..+ .+..++..++-.|+.+.|.+.-+=+-+..++++++++.+++|+|.+++++.+++++++|+.+......++++.
T Consensus 68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 3344 4456777888899999999999999999999999999999999999999999999999999988877655543
No 30
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.93 E-value=0.016 Score=45.84 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 61 YEPLWWVGMIT-MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 61 ~~~~W~~G~~~-~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
++|.|...+.. +.++..+--.|+..-|..+.-|+= +++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 33 ~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 33 RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45666555433 455666667778888999888875 4899999999999999999999999999999998754
No 31
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.89 E-value=0.0044 Score=56.46 Aligned_cols=62 Identities=13% Similarity=-0.034 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 73 ~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
.+++.+.+.++...|++.++++.-+..+++.+++..+++|+++..++.|+++++.|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999998876544
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.86 E-value=0.0052 Score=55.94 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
.|+. +.+...++..++.+.+.+..+-+-+.+.+++.+++.+++|||++++++.|..+.++|+.+.
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 5555 4677789999999999999999999999999999999999999999999999999999753
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.79 E-value=0.0092 Score=54.53 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=67.0
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhccccccch----hHHHHHHhhhheeeE
Q 024970 62 EPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFG----ILGCILCVVGSTTIV 133 (260)
Q Consensus 62 ~~~W~~G~~~---~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~----~~G~~li~~G~~lvv 133 (260)
...|..|++. ...|+++.+.|.....+++-.|+.. ...+++.+++.+++||+.++++ ..|.++++.|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3456667776 8899999999999999999999999 9999999999999999999999 899999999988876
Q ss_pred eec
Q 024970 134 LHA 136 (260)
Q Consensus 134 ~~~ 136 (260)
...
T Consensus 136 ~~~ 138 (290)
T TIGR00776 136 RSK 138 (290)
T ss_pred ecc
Confidence 554
No 34
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.69 E-value=0.021 Score=44.88 Aligned_cols=72 Identities=15% Similarity=0.014 Sum_probs=58.0
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 61 YEPLWWVGM-ITMVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 61 ~~~~W~~G~-~~~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
+++.|...+ ..+.++..+-..|+..-|.++.-++=+ ++.+...+.+.++.||+++..++.|+.+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 345554443 445666667777788889988877754 999999999999999999999999999999999765
No 35
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.65 E-value=0.012 Score=51.86 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHH-HHhccccccchhHHHHHHhhhheeeEeecCCcc
Q 024970 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAH-IILRERLHIFGILGCILCVVGSTTIVLHAPAER 140 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~-~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~ 140 (260)
.|......+..+.+.++...|....+++...+.++..+++. +++|||++++++.|..+...|+.++...+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~ 149 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence 55555677889999999999999999999999999999997 777999999999999999999887766555443
No 36
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.52 E-value=0.091 Score=47.76 Aligned_cols=112 Identities=14% Similarity=0.058 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc----------CCccccccchhH----HHHHHHHHHHHHH
Q 024970 16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG----------FGGYSYLYEPLW----WVGMITMVVGEIA 78 (260)
Q Consensus 16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~----------~~~~~~l~~~~W----~~G~~~~~~g~~~ 78 (260)
+...|+.+.+++.++.+.+.++.|.+..+.+.. ..|.. ..++...+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 347788999999999999999999876653321 11210 000111223333 45553 4566677
Q ss_pred HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
.+.++...|.+...-+.....++..+++ +||.+ ++.+..+..+|+.+++.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence 8888898898877666666666666655 35443 45667778889877664
No 37
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.039 Score=43.45 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=58.0
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 61 YEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 61 ~~~~W~~G~~-~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
+|+.|...+. .+++++.+-..|+..-|..+--++ .+++.+...+.+..++||+++..+++|..++++|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3455555444 356677777778888888887765 67999999999999999999999999999999998754
No 38
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.24 E-value=0.0035 Score=56.99 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-C-ccccCC------ccccccc--------hhHH--HHHHHHHHHHHH
Q 024970 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-G-VRAGFG------GYSYLYE--------PLWW--VGMITMVVGEIA 78 (260)
Q Consensus 17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~-~~~~~~------~~~~l~~--------~~W~--~G~~~~~~g~~~ 78 (260)
..+|+.+..+| .+.+...++-++.....+.+ + .|-... -.-|.+. +.|+ -|.... .|-.+
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvml 113 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVML 113 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHH
Confidence 55888899999 77777777777765544432 1 110000 0011111 1232 122211 22334
Q ss_pred HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
.+-||.+.|.+=-.-+.-.+-+++.++|..+||||.|+.|.+|+.....|+++++
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 4445554444433334567788999999999999999999999999999999986
No 39
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.18 E-value=0.021 Score=53.62 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
+..+...|+...+++..+=+-+.+.+++++++++++|||++++.+.+++++++|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 45566799999999999999999999999999999999999999999999999998865
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.12 E-value=0.088 Score=49.48 Aligned_cols=138 Identities=24% Similarity=0.277 Sum_probs=85.1
Q ss_pred CCCCCCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-cc-cc-------------CCccccccchhHH
Q 024970 2 ADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR-AG-------------FGGYSYLYEPLWW 66 (260)
Q Consensus 2 ~~~~~~~~~~~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~-~~-------------~~~~~~l~~~~W~ 66 (260)
+|-.+|+-. ...++..+|-++++.||.+.|+..++|++-.++.+... .. -+ -|+ .-+++-.|=
T Consensus 152 sD~~~~~~~-~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~~~~w~ 229 (334)
T PF06027_consen 152 SDVLSGSDS-SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILER-SGIESIHWT 229 (334)
T ss_pred ecccccccC-CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheeh-hhhhccCCC
Confidence 454444433 34567899999999999999999999999766533210 00 00 011 111111121
Q ss_pred HHHHHHHHHH-HHHHHHHhhccchh------hhcch-hHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCC
Q 024970 67 VGMITMVVGE-IANFAAYAFAPAIL------VTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (260)
Q Consensus 67 ~G~~~~~~g~-~~~~~Al~~ap~~l------V~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~ 138 (260)
.......+|+ ++.+.-|...|..+ +--++ ..+-++++++..++.|++++..-++|-++++.|.++.....++
T Consensus 230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 1112222222 45555555555433 12222 3456888999999999999999999999999999887776665
Q ss_pred ccc
Q 024970 139 ERE 141 (260)
Q Consensus 139 ~~~ 141 (260)
+++
T Consensus 310 ~~~ 312 (334)
T PF06027_consen 310 EEE 312 (334)
T ss_pred ccc
Confidence 554
No 41
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.05 E-value=0.024 Score=51.83 Aligned_cols=115 Identities=23% Similarity=0.169 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--ccc-----cC----Ccc---ccccchhHH----HHHHHHHHHHHH
Q 024970 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--VRA-----GF----GGY---SYLYEPLWW----VGMITMVVGEIA 78 (260)
Q Consensus 17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-----~~----~~~---~~l~~~~W~----~G~~~~~~g~~~ 78 (260)
...|+..++.|+++.+.-...-|+.. ..+.+. +.. ++ ... +....+.+| .|+. ..+++.+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 35699999999999988888777531 111100 000 00 000 111222333 4555 4678888
Q ss_pred HHHHHh-hccchhhhcchhHHHHHHHHHHHHHhccccccchh----HHHHHHhhhheeeE
Q 024970 79 NFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIV 133 (260)
Q Consensus 79 ~~~Al~-~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv 133 (260)
.+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++++ +|+++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888889 99999999999999999999999999999999999 99999999987653
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.94 E-value=0.32 Score=44.37 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=67.2
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccccchh----HHHHHHhhhheeeEe
Q 024970 63 PLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIVL 134 (260)
Q Consensus 63 ~~W~~G~~~---~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv~ 134 (260)
..|+.+++. -.+|+++|+.|+.....|.-.|++ +..++.|.+.+.+++||--+..++ .+.+++++|+.+-..
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556766654 478999999999999999999999 799999999999999999888776 478899999987777
Q ss_pred ecCCcccc
Q 024970 135 HAPAEREI 142 (260)
Q Consensus 135 ~~p~~~~~ 142 (260)
..+++++.
T Consensus 123 ~~~~~~~~ 130 (269)
T PF06800_consen 123 QDKKSDKS 130 (269)
T ss_pred cccccccc
Confidence 66665543
No 43
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=95.79 E-value=0.022 Score=51.77 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc-------c----------CCcccccc------------chhHH
Q 024970 16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-------G----------FGGYSYLY------------EPLWW 66 (260)
Q Consensus 16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-------~----------~~~~~~l~------------~~~W~ 66 (260)
....|..+++.|+++.++..++.||-.++.+.+..+. + .+..+... ...|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 3467999999999999999999988654211111110 0 01000000 01121
Q ss_pred HHHHH----HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970 67 VGMIT----MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (260)
Q Consensus 67 ~G~~~----~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 132 (260)
.+... ....+...+.++...+++..+-.+.+.-+++.+++..++||+++..++.|.++++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 12111 1112234456777888888888888889999999999999999999999999999998653
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.77 E-value=0.085 Score=48.51 Aligned_cols=121 Identities=11% Similarity=0.108 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccCCccc-cCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 024970 15 SDNIKGLILALSSS-IFIGSSFIVKKKGLKKAGASGVRA-GFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT 92 (260)
Q Consensus 15 ~~~~igv~lAl~sa-~~~a~g~vlqk~~~~~~~~~~~~~-~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~ 92 (260)
++.++=.++-.++- .|.++=..++.++..+-.+.+... .++..+.++-.....=.++++.|..+..++|....++--|
T Consensus 37 qhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQ 116 (372)
T KOG3912|consen 37 QHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQ 116 (372)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHH
Confidence 34444445555666 344444455544433322211110 1122234444455556788999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970 93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (260)
Q Consensus 93 Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~ 135 (260)
-+-+.-++|.-+++..+||++++.++|.|+..+.+|.+.+...
T Consensus 117 MlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 117 MLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 9999999999999999999999999999999999999877654
No 45
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.62 E-value=0.13 Score=41.49 Aligned_cols=112 Identities=24% Similarity=0.370 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCcccc--------------------CCccc-------ccc-----chh-
Q 024970 20 GLILALSSSIFIGSSFIVKKKGLKKAGA--SGVRAG--------------------FGGYS-------YLY-----EPL- 64 (260)
Q Consensus 20 gv~lAl~sa~~~a~g~vlqk~~~~~~~~--~~~~~~--------------------~~~~~-------~l~-----~~~- 64 (260)
|..+++.|+++.++-.+++|+..++... +..+.. .|... ..+ .+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999987766411 111100 01000 111 212
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 65 WWVGMITMV---VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 65 W~~G~~~~~---~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
|+.-+...+ +-+..++..+...++.--+=++.+--+...+++..+.+|+++..++.|+.+++.|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 211111112 3335566667777777777888899999999999999999999999999999999864
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.24 E-value=0.11 Score=49.13 Aligned_cols=60 Identities=18% Similarity=0.436 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHH------hccccccchhHHHHHHhhhheeeEe
Q 024970 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHII------LRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~------l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
...+.+.++.+.|.+..+=+.....++..++++++ +|||++++++.|++++.+|+.+++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999999999 6999999999999999999976654
No 47
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.95 E-value=0.27 Score=44.62 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=89.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc---c-------------CCccccccchhHH-HHHHH----HH
Q 024970 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA---G-------------FGGYSYLYEPLWW-VGMIT----MV 73 (260)
Q Consensus 15 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~-------------~~~~~~l~~~~W~-~G~~~----~~ 73 (260)
+-.-.|+.+|+.+..|.+.=.+.-||.-+..+ +.+. + ....+-+.+|.-. .++.. -+
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~--g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAGRAEH--GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhcccCC--CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcc
Confidence 34568999999999999988888887543211 1111 0 1112334444433 33333 34
Q ss_pred HHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 74 VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 74 ~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
+=+.+..+|+.-.|...-.-+.++.-.+..+....+|||++|..||.|+.+++.++.....-..++
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 445789999999999999999999999999999999999999999999999999987655544433
No 48
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.94 E-value=0.074 Score=50.47 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=66.5
Q ss_pred HHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcccc-----CCHHHHHHHhcC
Q 024970 80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREI-----ESVIEVWNLATE 154 (260)
Q Consensus 80 ~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~-----~t~~~l~~~~~~ 154 (260)
=+||++..++-.+=+.+.|=+|++.++.++.+||+|....+++++.+.|++++...+.++.++ ....+++.++..
T Consensus 177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA 256 (416)
T KOG2765|consen 177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSA 256 (416)
T ss_pred HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999988876644332 244566666655
Q ss_pred hhHHHHHH
Q 024970 155 PAFLLYAA 162 (260)
Q Consensus 155 ~~f~~y~~ 162 (260)
-.+.+|..
T Consensus 257 ~~YavY~v 264 (416)
T KOG2765|consen 257 LLYAVYTV 264 (416)
T ss_pred HHHHHHHH
Confidence 44555543
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.53 E-value=0.14 Score=48.41 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=85.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ccc-----------------cCCcccccc---chhHHHHHHH
Q 024970 13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VRA-----------------GFGGYSYLY---EPLWWVGMIT 71 (260)
Q Consensus 13 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~~-----------------~~~~~~~l~---~~~W~~G~~~ 71 (260)
|+.+..+|++..+++.+|.+.=.+=+|| .+.=+=|. ... ..+..++++ ...|..+++.
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 3456778888888888888777777777 22111000 000 011222333 2445555543
Q ss_pred ---HHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhcccc---ccc----hhHHHHHHhhhheeeEeecCCcc
Q 024970 72 ---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERL---HIF----GILGCILCVVGSTTIVLHAPAER 140 (260)
Q Consensus 72 ---~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~---~~~----~~~G~~li~~G~~lvv~~~p~~~ 140 (260)
-.+|++.++.+......|+-.|++. ++++.+.++...+.+|=- +.. ...|++++++|+.+....+.+.+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4789999999999999999999985 899999999999998633 333 35799999999988777444333
No 50
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.68 E-value=0.54 Score=44.29 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970 65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (260)
Q Consensus 65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~ 141 (260)
|-+=.+++.+-+-.++++++..|++.=+....+-++.++++...+|+||+++++|...++..+|+.++=+..+++.+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 33444677887779999999999999999999999999999999999999999999999999999887654444443
No 51
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=92.62 E-value=0.87 Score=41.58 Aligned_cols=120 Identities=22% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc-----------------c---CCccc----cccchhHHH
Q 024970 12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-----------------G---FGGYS----YLYEPLWWV 67 (260)
Q Consensus 12 ~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-----------------~---~~~~~----~l~~~~W~~ 67 (260)
....+...|+.+.+.+-++.|...+.|++-.++.+.+..+. . .+..+ ..+.|..+.
T Consensus 147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~ 226 (303)
T PF08449_consen 147 SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLL 226 (303)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHH
Confidence 33334445999999999999999999999766544322111 0 00011 112343332
Q ss_pred HHHH-HHHHHHHHH---HHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 68 GMIT-MVVGEIANF---AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 68 G~~~-~~~g~~~~~---~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
-+++ ...+.+++. .-...-.....+-...+--..+.+++..+.+++++..+|.|.+++..|..+
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 2222 233333333 222333444444555566678899999999999999999999999999764
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.42 E-value=0.76 Score=39.84 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc------------------cCC---ccccc-c-chhHHHHHH
Q 024970 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA------------------GFG---GYSYL-Y-EPLWWVGMI 70 (260)
Q Consensus 15 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~------------------~~~---~~~~l-~-~~~W~~G~~ 70 (260)
.+...|+...+.+.++.+...+.|+++.++.+.. ..+. ..+ ..+.. . .+.+|.-.+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence 3566777777777777788889998875542110 0000 000 01111 1 222333334
Q ss_pred HHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 71 TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 71 ~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
+...|..+-...+.+++.....=...+..+++.+++.++.+|+++...|.|+.++..|+.+
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4566777777778888888999999999999999999999999999999999999998653
No 53
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=91.98 E-value=1.3 Score=41.45 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 82 Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
.+.-.++.--+=.+.+.-++..+++..++||+++..+++|+++++.|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 44445555555555667788899999999999999999999999999864
No 54
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.7 Score=36.25 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHh-hccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 71 TMVVGEIANFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 71 ~~~~g~~~~~~Al~-~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
+.+.|.+.++..-. ++. .-+.-|++=+..++......-|.+.++.||.|...|.+|+ .++.++|..
T Consensus 42 L~lf~~llT~~~~~a~GR--vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~-~vil~~pR~ 108 (109)
T COG1742 42 LALFGWLLTLQPAAAFGR--VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGV-AVILFGPRG 108 (109)
T ss_pred HHHHHHHHHcCCchhhhh--HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhce-eeeEeCCCC
Confidence 34455555432222 221 3356678888899999999999999999999999999994 455666643
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=91.42 E-value=0.55 Score=43.22 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C--Ccc----------------ccCCccccccchhHHHHHHHHHHHHHH
Q 024970 18 IKGLILALSSSIFIGSSFIVKKKGLKKAGA-S--GVR----------------AGFGGYSYLYEPLWWVGMITMVVGEIA 78 (260)
Q Consensus 18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~-~--~~~----------------~~~~~~~~l~~~~W~~G~~~~~~g~~~ 78 (260)
--|+++++.+.+..+.--..-|.- +..+. | ..| ...+.++..|+|+=+....+..+=...
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~ 84 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL 84 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 347888888888876654443331 00000 0 011 011223456677655554443333345
Q ss_pred HHHHHhhccch---hhhcchh-HHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970 79 NFAAYAFAPAI---LVTPLGA-LSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (260)
Q Consensus 79 ~~~Al~~ap~~---lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 136 (260)
|..-+-.+|-. +=+.+|= +--++|.+++..++|||+++.+|+++.+..+|+....+..
T Consensus 85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555543 3334443 3446889999999999999999999999999997655433
No 56
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.59 E-value=1.2 Score=35.27 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=62.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccc-cchhHHHHHHhhhheeeE
Q 024970 56 GYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLH-IFGILGCILCVVGSTTIV 133 (260)
Q Consensus 56 ~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~-~~~~~G~~li~~G~~lvv 133 (260)
.+..+.+...|+=+++--.|+...+.-++-+|.++-.|+. +++..|+.++...+ ||+.. ++-..|+.++++|+.+.+
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence 3456667778888888888999999999999999999986 57888999888765 66665 455789999999987654
No 57
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=88.47 E-value=0.95 Score=41.35 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchh----HHHHHHhhhhee
Q 024970 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTT 131 (260)
Q Consensus 72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~l 131 (260)
..+|+++.+.|-.-.-+..=-|++.++++.+.+-+-+++||+=+++|+ .|+++++.|.++
T Consensus 205 w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 205 WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 467888888888877888888999999999999999999999998885 588889888764
No 58
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=87.34 E-value=3.3 Score=39.64 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=85.0
Q ss_pred CCccccCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc-----------------------cCCcccc
Q 024970 6 GHSWRDGM--SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-----------------------GFGGYSY 59 (260)
Q Consensus 6 ~~~~~~~~--~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~-----------------------~~~~~~~ 59 (260)
+++|+.+. .++..+|-++|+.||++.|+=.++-||...+++++ +..- +.++.+.
T Consensus 232 ~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l 311 (416)
T KOG2765|consen 232 GDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL 311 (416)
T ss_pred ccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC
Confidence 44555444 44569999999999999999999999865555322 2110 0111111
Q ss_pred ccchh----HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970 60 LYEPL----WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (260)
Q Consensus 60 l~~~~----W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~ 135 (260)
-.++. -..|.+.-+++..++..|.......+++-=..+++..+++.=..+-+.+.+...++|.+.+.+|-+++-..
T Consensus 312 P~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 312 PSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred CCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 11111 12444445566667777766666555554455777777776666668899999999999999998766554
Q ss_pred cC
Q 024970 136 AP 137 (260)
Q Consensus 136 ~p 137 (260)
..
T Consensus 392 ~~ 393 (416)
T KOG2765|consen 392 SE 393 (416)
T ss_pred cc
Confidence 43
No 59
>PRK02237 hypothetical protein; Provisional
Probab=85.56 E-value=3.7 Score=32.45 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=38.9
Q ss_pred hhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCC
Q 024970 91 VTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (260)
Q Consensus 91 V~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~ 138 (260)
-+.-|++=++.+++.....-|+|.++.|++|..+|.+|+.++. ++|.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR 108 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR 108 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence 3456778888899999999999999999999999999986543 5553
No 60
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=81.57 E-value=3.1 Score=38.35 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-cchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970 63 PLWWVGMITMVVGEIANFAAYAFA-PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (260)
Q Consensus 63 ~~W~~G~~~~~~g~~~~~~Al~~a-p~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~ 141 (260)
+.|..=..++-.-+..|=.|+.|. |..+=-=+-+-+++.|+++...++|+|-+.+++..++++.+|+++.-.++.++..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 346555555556667777788776 5444445678899999999999999999999999999999999998888776654
Q ss_pred c
Q 024970 142 I 142 (260)
Q Consensus 142 ~ 142 (260)
.
T Consensus 145 ~ 145 (330)
T KOG1583|consen 145 S 145 (330)
T ss_pred h
Confidence 3
No 61
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=80.22 E-value=20 Score=32.01 Aligned_cols=111 Identities=20% Similarity=0.326 Sum_probs=69.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc-------------------cC--CccccccchhHH--HHH
Q 024970 14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-------------------GF--GGYSYLYEPLWW--VGM 69 (260)
Q Consensus 14 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~-------------------~~--~~~~~l~~~~W~--~G~ 69 (260)
..+..+|+.+.++++++-+++.+...|-+++.+.+ ..|. +. .....++.-.|+ .=+
T Consensus 109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i 188 (244)
T PF04142_consen 109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI 188 (244)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence 56678999999999999999998888877664321 0111 00 011222222222 222
Q ss_pred HHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHH
Q 024970 70 ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL 124 (260)
Q Consensus 70 ~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~l 124 (260)
.+..+|-+.-...+.++.-.+=.=-.+++++.+.+++..+.+.+++..-.+|+.+
T Consensus 189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 2334455555555666665544445568889999999999999999887777654
No 62
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=78.14 E-value=2.8 Score=33.00 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=37.8
Q ss_pred hcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970 92 TPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (260)
Q Consensus 92 ~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p 137 (260)
+.-|++=++.+++-....-|+|.++.|++|..+|..|+.++. ++|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecC
Confidence 445677888999999999999999999999999999986543 444
No 63
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.27 E-value=3.3 Score=32.30 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 96 ALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 96 ~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
++++..=.++|.+++||+++...+.|-.++..|+.+
T Consensus 77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 467777789999999999999999988888877654
No 64
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=75.18 E-value=2 Score=39.53 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=85.8
Q ss_pred CCCCCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Ccc---------c-------cCCccccccchhH
Q 024970 3 DPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVR---------A-------GFGGYSYLYEPLW 65 (260)
Q Consensus 3 ~~~~~~~~~~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~---------~-------~~~~~~~l~~~~W 65 (260)
|+..|... +-..+..-|...|+.|.++.|--.++.|+--++.+.. ... + ++-..++..+.+|
T Consensus 176 ~~t~g~~~-s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~ 254 (346)
T KOG4510|consen 176 DTTEGEDS-SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRW 254 (346)
T ss_pred CCcccccc-ccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceE
Confidence 45555444 3345566678888999999888888877743333221 000 0 1223355556666
Q ss_pred H---HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 66 W---VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 66 ~---~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
+ .|+..+ +|+++-..++..-.+-=++=+.-..++++.+.-..+.||-.|.+.|.|.+.++...+.+..
T Consensus 255 l~~~lGvfgf-igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 255 LFVNLGVFGF-IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred EEEEehhhhh-HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 6 444443 5667777777765555555566788999999999999999999999999888777665544
No 65
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=74.33 E-value=1.2 Score=40.76 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
|+..-..|+...+..-++-|..-+.+.-.+++.++||.|-+..++.|++.|+.|+++++...-+.
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 33344567888888889999999999999999999999999999999999999999887654333
No 66
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=67.86 E-value=5.6 Score=31.32 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970 97 LSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 97 ~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 131 (260)
+++..=.++|.+++||+++.....|-++++.++..
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 44555567899999999999999988888777644
No 67
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=65.20 E-value=54 Score=28.26 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=32.8
Q ss_pred cccchhHH--HHHHHHHHHH---HHHHHHHhhc---------cchhhhcchhHHHHH--HHHHHHHH
Q 024970 59 YLYEPLWW--VGMITMVVGE---IANFAAYAFA---------PAILVTPLGALSIII--SAALAHII 109 (260)
Q Consensus 59 ~l~~~~W~--~G~~~~~~g~---~~~~~Al~~a---------p~~lV~Pl~~~~lv~--~~~la~~~ 109 (260)
.+|+-.+. .||++-++|. ++..++-+.. |-..++|+..+.+.. |.++||+.
T Consensus 103 ~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~lsqp~g~~~~~~~~~i~~lDvf~vqAn~n~i~AHfv 169 (183)
T PF12263_consen 103 LLRIGLIINLVGMLLTLLGAQATVGTLVAKALSQPQGAAIYNPSQPIRALDVFVVQANTNTILAHFV 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 34444443 7777765554 4555555554 678899999988874 57777764
No 68
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=56.62 E-value=23 Score=31.33 Aligned_cols=61 Identities=25% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970 76 EIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (260)
Q Consensus 76 ~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 136 (260)
+-....|+.-.+++.++.+.+..--|-.+++...+|+|+...+++...+.+.|++++....
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 3466788888899999999999999999999999999999999999999999998877543
No 69
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=53.57 E-value=4.9 Score=37.59 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (260)
Q Consensus 73 ~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 134 (260)
.+|-.+.-.|+..-|++-.|-+-++..+++++++.++.+|+.++.-+.-...++.|+.+-..
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 57778888999999999999999999999999999999999999999888888888766544
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=52.01 E-value=59 Score=29.98 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=52.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHH----HHHhhccchhhhcchhHHHHHHHHHHHHHh-ccc--cccch----hHHHHHHh
Q 024970 58 SYLYEPLWWVGMITMVVGEIANF----AAYAFAPAILVTPLGALSIIISAALAHIIL-RER--LHIFG----ILGCILCV 126 (260)
Q Consensus 58 ~~l~~~~W~~G~~~~~~g~~~~~----~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l-~e~--~~~~~----~~G~~li~ 126 (260)
.-+++|.-|.=++.++...+.|. .|+..-+.++|.|+--.......+++...+ +|- .+..+ ..|+..++
T Consensus 205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 34566665543444444444443 478888999999999988877776666544 542 33333 36889999
Q ss_pred hhheeeEeecCCc
Q 024970 127 VGSTTIVLHAPAE 139 (260)
Q Consensus 127 ~G~~lvv~~~p~~ 139 (260)
.|+.++..+.+++
T Consensus 285 ~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 285 IGVFLLSSSKDKE 297 (300)
T ss_pred HhhheeeccCchh
Confidence 9988875555443
No 71
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=49.18 E-value=1.8e+02 Score=27.39 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (260)
Q Consensus 73 ~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~ 139 (260)
.++.-++.-||.+.+-....=-=+.-++-.++...+.-|+|.+..|++-..++..|+.++..+..++
T Consensus 94 ~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 94 TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 5777788888888754433222234455667788888899999999999999999999998885544
No 72
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=48.47 E-value=41 Score=31.27 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970 100 IISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (260)
Q Consensus 100 v~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 133 (260)
.++++++-.+.+.++|+..|+|+.++..|+.+..
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 5778888899999999999999999999997753
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=45.33 E-value=1.6e+02 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=25.6
Q ss_pred HHHHHHHHHHH----HhccccccchhHHHHHHhhhhee
Q 024970 98 SIIISAALAHI----ILRERLHIFGILGCILCVVGSTT 131 (260)
Q Consensus 98 ~lv~~~~la~~----~l~e~~~~~~~~G~~li~~G~~l 131 (260)
+++.++++-++ .-|+|++..+..|..++++|+.+
T Consensus 101 Ql~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 101 QLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44555566665 45688999999999999999753
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=43.70 E-value=21 Score=32.60 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=69.4
Q ss_pred ccchhHHHHHHH---HHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhccccccchh----HHHHHHhhhhee
Q 024970 60 LYEPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFGI----LGCILCVVGSTT 131 (260)
Q Consensus 60 l~~~~W~~G~~~---~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~l 131 (260)
..-..|..|++. -..|+..||-|...-..|.-.|+.. ..++-+.+++.+.+||=-+..+. .+.++++.|+.+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 334557777755 3579999999999999999999975 88999999999999998887664 567888999888
Q ss_pred eEeecCCccccCCHHHHH
Q 024970 132 IVLHAPAEREIESVIEVW 149 (260)
Q Consensus 132 vv~~~p~~~~~~t~~~l~ 149 (260)
-..-.+.+.++.+++.+.
T Consensus 134 Ts~~~~~nk~~~~~~n~k 151 (288)
T COG4975 134 TSKQDRNNKEEENPSNLK 151 (288)
T ss_pred eeeeccccccccChHhhh
Confidence 777666445444555443
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=43.43 E-value=70 Score=30.31 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHhccccc--cch----hHHHHHHhhhheeeEee
Q 024970 96 ALSIIISAALAHIILRERLH--IFG----ILGCILCVVGSTTIVLH 135 (260)
Q Consensus 96 ~~~lv~~~~la~~~l~e~~~--~~~----~~G~~li~~G~~lvv~~ 135 (260)
+..++++.+-.- ++||+=+ +++ +.|+++++.|.+++...
T Consensus 298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 555566666555 4999877 544 57999999998876554
No 76
>COG2245 Predicted membrane protein [Function unknown]
Probab=41.59 E-value=1.4e+02 Score=25.61 Aligned_cols=42 Identities=17% Similarity=-0.010 Sum_probs=27.1
Q ss_pred CCccccCCcchhHHHHHHHHHHHHH--HHHHHHHHHhhhhhhcc
Q 024970 6 GHSWRDGMSSDNIKGLILALSSSIF--IGSSFIVKKKGLKKAGA 47 (260)
Q Consensus 6 ~~~~~~~~~~~~~igv~lAl~sa~~--~a~g~vlqk~~~~~~~~ 47 (260)
.|+|.+|.--...+|..+|..-.+- .=.|...|||+.+..++
T Consensus 86 ~~~~~~~~~~~~~l~~~Lag~Vi~wIl~Iisayf~kkaleala~ 129 (182)
T COG2245 86 LGTFMLPAHGLSALGSFLAGFVILWILYIISAYFQKKALEALAQ 129 (182)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666676666554443 35678899998765543
No 77
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=39.67 E-value=27 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970 99 IIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (260)
Q Consensus 99 lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p 137 (260)
=.|+.+.+..+.+.+++.++|+|+.++..+...-+.++.
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 368899999999999999999999999999887777665
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=37.80 E-value=20 Score=32.74 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHHHHhccccccchh----HHHHHHhhhheeeEe
Q 024970 93 PLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIVL 134 (260)
Q Consensus 93 Pl~~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv~ 134 (260)
.+..++++.+.+=.-+++|||=|++|+ .|+.+++.|++++.+
T Consensus 240 SlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 240 SLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred eHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 455667777888888999999999995 589999999876543
No 79
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.65 E-value=34 Score=27.38 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=3.8
Q ss_pred HHHHHhheec
Q 024970 169 FILIFHYIPQ 178 (260)
Q Consensus 169 ~~l~~~~~~r 178 (260)
+++.+++++|
T Consensus 16 ~~~~~~~~rR 25 (130)
T PF12273_consen 16 LFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 80
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=29.32 E-value=1.9e+02 Score=26.81 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=45.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 024970 12 GMSSDNIKGLILALSSSIFIGSSFIVKKK-GLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAY 83 (260)
Q Consensus 12 ~~~~~~~igv~lAl~sa~~~a~g~vlqk~-~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al 83 (260)
|+-..-.+|+..|+.-++.+-+..+-.+| |....+.+ ....+.-||..|.-.+...+.|.+.-|.+.
T Consensus 42 ~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~e-----KRf~~iGRRwqWyW~~fv~a~~~iS~f~~I 109 (296)
T PF10361_consen 42 PIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLE-----KRFYPIGRRWQWYWMLFVCACGLISLFMSI 109 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCch-----hcccccchhHHHHHHHHHHHHHHHhhheee
Confidence 44567789999999888888777654444 44433322 122356688899988888778887777654
No 81
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.31 E-value=28 Score=32.30 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhe
Q 024970 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGST 130 (260)
Q Consensus 73 ~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 130 (260)
+++...|-..|.+.|++-=+-=-++..+||.+++..++|+|-+..-..+|.+++.|-.
T Consensus 113 i~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 113 ILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 3444566666777777766656678899999999999999999999999999998854
No 82
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.05 E-value=3.5e+02 Score=23.16 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=19.6
Q ss_pred Hhhccchh---hhcchhHHHHHHHHHHHHHhccccccc
Q 024970 83 YAFAPAIL---VTPLGALSIIISAALAHIILRERLHIF 117 (260)
Q Consensus 83 l~~ap~~l---V~Pl~~~~lv~~~~la~~~l~e~~~~~ 117 (260)
.++.|..+ +.|...+-+-.-+...++++++|.+.+
T Consensus 167 ~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 167 TSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455543 344444444444556778888887654
No 83
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.98 E-value=2.8e+02 Score=25.26 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---hhhhcchhH--HHHHHHHH---HHHHhccccccchhHHHHHHhhhheeeEeecCC
Q 024970 67 VGMITMVVGEIANFAAYAFAPA---ILVTPLGAL--SIIISAAL---AHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (260)
Q Consensus 67 ~G~~~~~~g~~~~~~Al~~ap~---~lV~Pl~~~--~lv~~~~l---a~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~ 138 (260)
+||..+..|-+.....+..... .++.|+.++ +.+...+. +....|-|+...+..=+-+..+|+..+.-++..
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888877777777777776643 566776543 33333333 233345555555544455555555544444443
Q ss_pred ccccCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHh----heeccCccceeEeeeeecchh
Q 024970 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFH----YIPQYGQTHIMVYIGVCSLVG 195 (260)
Q Consensus 139 ~~~~~t~~~l~~~~~~~~f~~y~~~~~v~~~~l~~~----~~~r~g~~~~l~y~~i~gl~g 195 (260)
-...++.+++.....++.++.-..+...+.+ ..- ..|.-.|+|.+.....||.+.
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mAI--lHPFNACLGPnE~q~RTL~la~~~G~ls 213 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMAI--LHPFNACLGPNESQDRTLTLAVECGFLS 213 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHHh--cCccccccCCCcchhHHHHHHHHHHHHH
Confidence 4445677788877777777654444433221 111 234445667666555565544
No 84
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=21.35 E-value=1.9e+02 Score=25.19 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHH
Q 024970 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHII 109 (260)
Q Consensus 72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~ 109 (260)
..+++.+...++...|++.++|+.-+.-+++.+++.+.
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999998764
No 85
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.71 E-value=1.5e+02 Score=19.16 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=8.1
Q ss_pred cchhHHHHHHH
Q 024970 61 YEPLWWVGMIT 71 (260)
Q Consensus 61 ~~~~W~~G~~~ 71 (260)
|-|+|++|.+.
T Consensus 7 RIPLWlVgtv~ 17 (40)
T PF01788_consen 7 RIPLWLVGTVA 17 (40)
T ss_dssp SS-HHHHHHHH
T ss_pred cccchHHHHHH
Confidence 67999988865
Done!