Query 024970
Match_columns 260
No_of_seqs 146 out of 638
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 4.6E-08 1.6E-12 76.1 10.2 100 22-136 5-105 (110)
2 2i68_A Protein EMRE; transmemb 98.7 2.7E-08 9.1E-13 80.6 6.2 100 22-136 5-105 (137)
3 3arc_J Photosystem II reaction 18.9 1.1E+02 0.0036 19.0 2.9 11 61-71 7-17 (40)
4 2hac_A T-cell surface glycopro 12.7 1.1E+02 0.0039 18.1 1.8 23 95-117 9-31 (33)
5 3arc_L Photosystem II reaction 6.7 4.7E+02 0.016 15.7 3.3 23 221-243 15-37 (37)
6 3o7q_A L-fucose-proton symport 6.5 3.1E+02 0.011 23.4 3.1 18 57-74 252-269 (438)
7 1m56_C Cytochrome C oxidase; m 3.3 1.9E+03 0.066 18.3 7.1 23 61-84 76-98 (266)
8 4a2n_B Isoprenylcysteine carbo 3.2 1.7E+03 0.058 17.5 7.5 23 54-77 118-140 (194)
9 1wkt_A Yeast killer toxin; wil 2.8 4.2E+02 0.014 18.3 0.8 6 3-8 12-17 (88)
10 2i88_A Colicin-E1; protein-mem 2.8 1.2E+03 0.04 19.1 3.6 28 81-109 149-177 (191)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.77 E-value=4.6e-08 Score=76.10 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHH
Q 024970 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII 100 (260)
Q Consensus 22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv 100 (260)
++-+.+.++.+.+....|++. + ..|.+.++.+...+.++..+...|+...|.+.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 345667788888988888851 1 112344567778888999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970 101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (260)
Q Consensus 101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 136 (260)
++.+++.+++||+++..++.|+.+++.|++++-..+
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998775543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.67 E-value=2.7e-08 Score=80.59 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHH
Q 024970 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII 100 (260)
Q Consensus 22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv 100 (260)
++-+++.++.+.|..+.|++.. ..+.+.++.|.+..++++.+...++...|++...|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g---------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 3456677888889899888520 112344568888899999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970 101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (260)
Q Consensus 101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 136 (260)
++.+++.+++||+++..+++|++++++|++++-..+
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998875543
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=18.91 E-value=1.1e+02 Score=18.96 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=9.1
Q ss_pred cchhHHHHHHH
Q 024970 61 YEPLWWVGMIT 71 (260)
Q Consensus 61 ~~~~W~~G~~~ 71 (260)
|-|+|++|...
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 67999998865
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=12.69 E-value=1.1e+02 Score=18.08 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHhccccccc
Q 024970 95 GALSIIISAALAHIILRERLHIF 117 (260)
Q Consensus 95 ~~~~lv~~~~la~~~l~e~~~~~ 117 (260)
.++=++...++..++.+||+.+.
T Consensus 9 DgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 9 DGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456678888889999998764
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.75 E-value=4.7e+02 Score=15.66 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 024970 221 YPQTWAFTLIVIVCVLTQMNYLN 243 (260)
Q Consensus 221 ~~~~y~l~~~~v~~~~~Q~~~LN 243 (260)
.-..|-++++.+.+..+--||+|
T Consensus 15 TSLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhhhhccC
Confidence 44556677777778888888876
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.49 E-value=3.1e+02 Score=23.43 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=10.8
Q ss_pred cccccchhHHHHHHHHHH
Q 024970 57 YSYLYEPLWWVGMITMVV 74 (260)
Q Consensus 57 ~~~l~~~~W~~G~~~~~~ 74 (260)
++.+|+|.+|..+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFC 269 (438)
T ss_dssp HHHTTCSHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHH
Confidence 356677777765555433
No 7
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=3.25 E-value=1.9e+03 Score=18.26 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=15.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 024970 61 YEPLWWVGMITMVVGEIANFAAYA 84 (260)
Q Consensus 61 ~~~~W~~G~~~~~~g~~~~~~Al~ 84 (260)
+++.| .||.+++++++.-|.++-
T Consensus 76 ~~~~~-~Gm~lfI~SE~~~F~s~f 98 (266)
T 1m56_C 76 RLGLR-WGFILFIMSEVMFFSAWF 98 (266)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccccc-HHHHHHHHHHHHHHHHHH
Confidence 34444 488888899987776543
No 8
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=3.19 E-value=1.7e+03 Score=17.47 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCccccccchhHHHHHHHHHHHHH
Q 024970 54 FGGYSYLYEPLWWVGMITMVVGEI 77 (260)
Q Consensus 54 ~~~~~~l~~~~W~~G~~~~~~g~~ 77 (260)
++..++.|+|.. .|..++..|..
T Consensus 118 ~G~y~~vRHP~Y-~G~~l~~~g~~ 140 (194)
T 4a2n_B 118 EGIYKNIRHPMY-AHLWLWVITQG 140 (194)
T ss_dssp SSTTTTBSSHHH-HHHHHHHHHHH
T ss_pred cCcchhccCccH-HHHHHHHHHHH
Confidence 456688899984 45555555543
No 9
>1wkt_A Yeast killer toxin; williopsis mrakii; NMR {Williopsis saturnus var} SCOP: b.11.1.2
Probab=2.85 E-value=4.2e+02 Score=18.32 Aligned_cols=6 Identities=67% Similarity=0.877 Sum_probs=3.4
Q ss_pred CCCCCc
Q 024970 3 DPNGHS 8 (260)
Q Consensus 3 ~~~~~~ 8 (260)
|||+|+
T Consensus 12 dpn~gs 17 (88)
T 1wkt_A 12 DPNTGS 17 (88)
T ss_dssp CTTTSC
T ss_pred CCCCCc
Confidence 566554
No 10
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=2.75 E-value=1.2e+03 Score=19.09 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=15.5
Q ss_pred HHHhhccchhhhcchhHHHHHH-HHHHHHH
Q 024970 81 AAYAFAPAILVTPLGALSIIIS-AALAHII 109 (260)
Q Consensus 81 ~Al~~ap~~lV~Pl~~~~lv~~-~~la~~~ 109 (260)
+|+.| |..+-+|+|.+++..- .+.++++
T Consensus 149 vA~~f-S~~~g~p~gi~g~aii~a~v~s~I 177 (191)
T 2i88_A 149 VALLF-SLLAGTTLGIWGIAIVTGILCSYI 177 (191)
T ss_dssp HHHHH-HHHHTCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHHHcchHHHHHHHHHHHHHHHHh
Confidence 44433 4456678888887633 3334433
Done!