Query 024970
Match_columns 260
No_of_seqs 146 out of 638
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 17:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 18.4 56 0.0041 18.0 2.9 11 61-71 1-11 (34)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 8.5 1.8E+02 0.013 16.0 3.3 23 221-243 15-37 (37)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 5.0 4.9E+02 0.036 19.7 5.7 14 58-71 17-30 (447)
4 d1egwa_ d.88.1.1 (A:) Myocyte 5.0 2.3E+02 0.016 17.8 2.7 42 111-152 22-68 (71)
5 d1nekd_ f.21.2.2 (D:) Succinat 4.0 4.5E+02 0.033 17.2 4.0 44 119-164 19-62 (113)
6 d1s14a_ d.122.1.2 (A:) Topoiso 3.4 1.3E+02 0.0097 22.2 0.4 17 232-248 135-151 (168)
7 d3cx5c1 f.32.1.1 (C:262-385) M 3.3 3.7E+02 0.027 18.4 3.0 21 58-78 59-79 (124)
8 d1rh5c_ f.23.29.1 (C:) Sec-bet 3.2 3.3E+02 0.024 14.0 1.8 15 12-26 7-21 (32)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 1.5E+02 0.011 19.2 0.3 14 135-148 4-17 (91)
10 d1r0ka3 d.81.1.3 (A:127-264) 1 2.9 58 0.0042 23.8 -2.2 17 240-256 88-104 (138)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.35 E-value=56 Score=17.95 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.5
Q ss_pred cchhHHHHHHH
Q 024970 61 YEPLWWVGMIT 71 (260)
Q Consensus 61 ~~~~W~~G~~~ 71 (260)
|-|+|++|...
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 46899988765
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.48 E-value=1.8e+02 Score=16.01 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 024970 221 YPQTWAFTLIVIVCVLTQMNYLN 243 (260)
Q Consensus 221 ~~~~y~l~~~~v~~~~~Q~~~LN 243 (260)
.-..|-++++.+.++++--+|+|
T Consensus 15 tsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC
Confidence 34446677777777888888876
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=4.9e+02 Score=19.73 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=8.8
Q ss_pred ccccchhHHHHHHH
Q 024970 58 SYLYEPLWWVGMIT 71 (260)
Q Consensus 58 ~~l~~~~W~~G~~~ 71 (260)
+..|+.+|..-..+
T Consensus 17 ~~~~~~~w~i~~~~ 30 (447)
T d1pw4a_ 17 PTYRRLRWQIFLGI 30 (447)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 45567778765544
No 4
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.02 E-value=2.3e+02 Score=17.78 Aligned_cols=42 Identities=2% Similarity=0.048 Sum_probs=23.7
Q ss_pred ccccccchhHHHHHHhhhh-eeeEeecCCccc----cCCHHHHHHHh
Q 024970 111 RERLHIFGILGCILCVVGS-TTIVLHAPAERE----IESVIEVWNLA 152 (260)
Q Consensus 111 ~e~~~~~~~~G~~li~~G~-~lvv~~~p~~~~----~~t~~~l~~~~ 152 (260)
|++-+......=+-+.+|+ +.+++++|.+.. ..+.+++.+.|
T Consensus 22 KRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry 68 (71)
T d1egwa_ 22 KRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred HhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence 3444444444545666777 667788886643 22556665544
No 5
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=4.5e+02 Score=17.24 Aligned_cols=44 Identities=7% Similarity=-0.064 Sum_probs=25.9
Q ss_pred hHHHHHHhhhheeeEeecCCccccCCHHHHHHHhcChhHHHHHHHH
Q 024970 119 ILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALV 164 (260)
Q Consensus 119 ~~G~~li~~G~~lvv~~~p~~~~~~t~~~l~~~~~~~~f~~y~~~~ 164 (260)
.-+++++.....++......+ ..+.|+..+.+++|.......+.
T Consensus 19 vSAv~l~~l~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~il~~l~ 62 (113)
T d1nekd_ 19 ATAIVLTLYIIYMVGFFATSG--ELTYEVWIGFFASAFTKVFTLLA 62 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS--SCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHhChHHHHHHHHH
Confidence 345555555544433333333 34678999999999775554443
No 6
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=1.3e+02 Score=22.17 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhcCC
Q 024970 232 IVCVLTQMNYLNMVMPI 248 (260)
Q Consensus 232 v~~~~~Q~~~LN~aL~~ 248 (260)
+.--+-|+.|||++|+.
T Consensus 135 l~~rlre~AfLn~GL~I 151 (168)
T d1s14a_ 135 LTHVLKAKAVLCPGVEI 151 (168)
T ss_dssp HHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHhhcCCCCEE
Confidence 34556799999999964
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.33 E-value=3.7e+02 Score=18.35 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=11.3
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 024970 58 SYLYEPLWWVGMITMVVGEIA 78 (260)
Q Consensus 58 ~~l~~~~W~~G~~~~~~g~~~ 78 (260)
+..|...|......++++.++
T Consensus 59 p~~k~~fw~fv~~fi~LtwlG 79 (124)
T d3cx5c1 59 VLSKFFFFIFVFNFVLLGQIG 79 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 344445566555555666653
No 8
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.18 E-value=3.3e+02 Score=14.02 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=10.8
Q ss_pred CCcchhHHHHHHHHH
Q 024970 12 GMSSDNIKGLILALS 26 (260)
Q Consensus 12 ~~~~~~~igv~lAl~ 26 (260)
|..+++.+|+..|.+
T Consensus 7 rvkpehvigvtvafv 21 (32)
T d1rh5c_ 7 RVKPEHVIGVTVAFV 21 (32)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred eeccceEEEEEEehh
Confidence 456778899887754
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.95 E-value=1.5e+02 Score=19.23 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=6.2
Q ss_pred ecCCccccCCHHHH
Q 024970 135 HAPAEREIESVIEV 148 (260)
Q Consensus 135 ~~p~~~~~~t~~~l 148 (260)
+.|+++.....+++
T Consensus 4 ldP~gp~a~~i~~L 17 (91)
T d1fftb2 4 LDPKGQIGLEQRSL 17 (91)
T ss_dssp SSCCSCCHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 45555443333444
No 10
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=2.90 E-value=58 Score=23.80 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=12.8
Q ss_pred HHHhhhcCCcccceeee
Q 024970 240 NYLNMVMPISSLFYLFL 256 (260)
Q Consensus 240 ~~LN~aL~~~~~~~~~~ 256 (260)
...||+|+..+|.++|-
T Consensus 88 TmmNK~lEvIEA~~LF~ 104 (138)
T d1r0ka3 88 TMMNKGLELIEAFHLFQ 104 (138)
T ss_dssp HTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHC
Confidence 34788888888877764
Done!