Query 024971
Match_columns 260
No_of_seqs 438 out of 1302
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 08:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 100.0 1.9E-38 4.1E-43 234.1 22.1 243 2-244 51-293 (294)
2 PLN02679 hydrolase, alpha/beta 100.0 2.3E-35 4.9E-40 222.1 22.3 239 2-246 110-358 (360)
3 TIGR02240 PHA_depoly_arom poly 100.0 7.6E-34 1.6E-38 207.7 16.2 222 2-247 47-268 (276)
4 PLN02965 Probable pheophorbida 100.0 1.4E-33 3.1E-38 203.8 17.3 221 3-246 26-254 (255)
5 PLN02578 hydrolase 100.0 1.3E-32 2.9E-37 207.0 22.9 233 2-243 108-353 (354)
6 KOG4178 Soluble epoxide hydrol 100.0 2.5E-33 5.3E-38 197.5 16.0 235 5-246 70-321 (322)
7 PRK03592 haloalkane dehalogena 100.0 4.1E-33 8.9E-38 205.8 16.3 231 2-247 49-291 (295)
8 PRK10349 carboxylesterase BioH 100.0 1.3E-31 2.8E-36 194.1 19.0 218 2-243 35-254 (256)
9 TIGR03343 biphenyl_bphD 2-hydr 100.0 1.6E-31 3.4E-36 196.5 18.2 221 4-243 58-281 (282)
10 PRK10673 acyl-CoA esterase; Pr 100.0 2.2E-31 4.8E-36 193.0 18.0 214 2-244 38-254 (255)
11 TIGR03056 bchO_mg_che_rel puta 100.0 4E-31 8.7E-36 194.1 19.4 229 2-243 50-278 (278)
12 PRK06489 hypothetical protein; 100.0 4.8E-31 1E-35 199.2 19.6 237 4-247 103-359 (360)
13 PRK00870 haloalkane dehalogena 100.0 2.3E-31 5E-36 197.0 15.8 218 3-244 69-300 (302)
14 PLN03087 BODYGUARD 1 domain co 100.0 2.1E-31 4.5E-36 203.4 15.2 227 5-244 231-478 (481)
15 PRK03204 haloalkane dehalogena 100.0 1.8E-30 3.9E-35 190.2 18.7 222 2-242 56-285 (286)
16 PRK07581 hypothetical protein; 100.0 2.8E-30 6.1E-35 194.0 18.9 233 2-245 66-336 (339)
17 PRK08775 homoserine O-acetyltr 100.0 5.2E-30 1.1E-34 192.5 20.0 228 2-247 94-341 (343)
18 TIGR02427 protocat_pcaD 3-oxoa 100.0 1.9E-30 4.2E-35 187.6 16.9 217 2-243 35-251 (251)
19 TIGR03611 RutD pyrimidine util 100.0 6E-30 1.3E-34 185.8 19.2 219 2-243 35-256 (257)
20 TIGR01738 bioH putative pimelo 100.0 1.5E-29 3.2E-34 182.4 19.9 217 2-242 26-245 (245)
21 KOG4409 Predicted hydrolase/ac 100.0 1.1E-29 2.5E-34 179.7 17.7 239 2-244 112-363 (365)
22 KOG1454 Predicted hydrolase/ac 100.0 1.5E-30 3.2E-35 191.0 13.3 233 3-245 81-324 (326)
23 PRK11126 2-succinyl-6-hydroxy- 100.0 2.3E-29 5E-34 181.0 18.8 214 2-244 24-241 (242)
24 PLN03084 alpha/beta hydrolase 100.0 9.9E-29 2.1E-33 185.4 22.7 225 2-243 149-382 (383)
25 PLN02385 hydrolase; alpha/beta 100.0 2.8E-30 6.1E-35 194.5 14.0 219 5-245 114-345 (349)
26 PF12697 Abhydrolase_6: Alpha/ 100.0 3.2E-30 7E-35 183.7 11.1 208 2-237 20-228 (228)
27 TIGR01392 homoserO_Ac_trn homo 100.0 9E-29 2E-33 186.4 18.8 233 4-243 70-351 (351)
28 PRK00175 metX homoserine O-ace 100.0 1.8E-28 3.9E-33 186.0 18.4 238 4-248 89-377 (379)
29 TIGR03695 menH_SHCHC 2-succiny 100.0 4.8E-28 1E-32 175.0 19.0 225 2-243 23-251 (251)
30 PLN02894 hydrolase, alpha/beta 100.0 1E-27 2.2E-32 182.5 18.9 247 2-251 127-391 (402)
31 PF00561 Abhydrolase_1: alpha/ 100.0 1.8E-29 3.9E-34 180.4 8.8 218 7-239 1-229 (230)
32 PLN02298 hydrolase, alpha/beta 100.0 2E-28 4.3E-33 183.5 14.5 216 5-245 86-317 (330)
33 TIGR01250 pro_imino_pep_2 prol 100.0 2.7E-27 5.9E-32 174.7 20.0 221 6-243 53-288 (288)
34 PHA02857 monoglyceride lipase; 100.0 2.3E-28 5E-33 179.0 14.0 212 5-244 51-272 (276)
35 PRK10749 lysophospholipase L2; 100.0 1.1E-28 2.4E-33 184.3 11.4 231 4-244 79-328 (330)
36 PRK14875 acetoin dehydrogenase 100.0 6.8E-27 1.5E-31 178.4 19.1 213 2-244 153-370 (371)
37 PLN02211 methyl indole-3-aceta 100.0 1.9E-26 4E-31 167.4 17.9 218 5-244 44-269 (273)
38 COG2267 PldB Lysophospholipase 99.9 4.1E-26 8.8E-31 166.2 17.6 222 4-245 59-294 (298)
39 KOG1455 Lysophospholipase [Lip 99.9 7.2E-27 1.5E-31 162.5 11.6 216 4-243 80-310 (313)
40 PLN02980 2-oxoglutarate decarb 99.9 5.4E-26 1.2E-30 197.3 19.3 232 2-250 1393-1644(1655)
41 PRK06765 homoserine O-acetyltr 99.9 1.5E-25 3.3E-30 168.6 19.4 235 5-244 98-387 (389)
42 TIGR01249 pro_imino_pep_1 prol 99.9 6.3E-25 1.4E-29 162.7 20.1 81 4-89 51-131 (306)
43 PLN02511 hydrolase 99.9 1.1E-26 2.4E-31 176.2 10.2 220 3-246 126-366 (388)
44 PLN02652 hydrolase; alpha/beta 99.9 4.4E-26 9.6E-31 172.2 13.1 215 4-245 161-387 (395)
45 KOG2984 Predicted hydrolase [G 99.9 4.7E-26 1E-30 148.5 11.0 204 7-244 72-275 (277)
46 PRK05855 short chain dehydroge 99.9 7.7E-25 1.7E-29 176.6 14.1 232 2-247 47-294 (582)
47 KOG2382 Predicted alpha/beta h 99.9 6.7E-24 1.5E-28 150.2 16.6 218 6-245 80-313 (315)
48 TIGR01607 PST-A Plasmodium sub 99.9 4.2E-24 9E-29 159.2 13.4 219 4-243 72-331 (332)
49 COG1647 Esterase/lipase [Gener 99.9 2.3E-23 5E-28 138.3 14.0 195 4-243 40-242 (243)
50 PRK05077 frsA fermentation/res 99.9 1.5E-22 3.3E-27 154.4 19.1 188 4-244 220-411 (414)
51 TIGR03100 hydr1_PEP hydrolase, 99.9 4.9E-23 1.1E-27 149.8 12.8 197 5-243 56-273 (274)
52 TIGR01838 PHA_synth_I poly(R)- 99.9 6.7E-22 1.5E-26 153.0 18.9 221 4-232 218-462 (532)
53 PLN02872 triacylglycerol lipas 99.9 4.1E-21 9E-26 144.8 18.7 236 4-246 105-390 (395)
54 PRK10985 putative hydrolase; P 99.9 3.8E-22 8.3E-27 148.7 12.6 219 4-245 85-320 (324)
55 TIGR01836 PHA_synth_III_C poly 99.9 5.6E-21 1.2E-25 144.1 16.4 227 4-244 92-349 (350)
56 PRK13604 luxD acyl transferase 99.9 1.6E-20 3.5E-25 134.6 12.5 178 4-227 62-246 (307)
57 PF03096 Ndr: Ndr family; Int 99.8 6.9E-20 1.5E-24 128.7 13.7 224 2-246 51-280 (283)
58 COG0596 MhpC Predicted hydrola 99.8 2.1E-19 4.6E-24 131.2 17.1 223 7-243 51-280 (282)
59 COG2021 MET2 Homoserine acetyl 99.8 1.9E-18 4E-23 124.6 18.4 239 5-244 91-367 (368)
60 COG3208 GrsT Predicted thioest 99.8 5.4E-19 1.2E-23 120.3 13.5 201 2-243 29-234 (244)
61 KOG2931 Differentiation-relate 99.8 7.8E-18 1.7E-22 116.9 18.2 223 3-246 75-307 (326)
62 PRK11071 esterase YqiA; Provis 99.8 7.7E-19 1.7E-23 120.4 13.1 159 5-243 31-189 (190)
63 PRK07868 acyl-CoA synthetase; 99.8 2.2E-18 4.8E-23 145.6 16.8 236 4-247 97-363 (994)
64 KOG1552 Predicted alpha/beta h 99.8 9.4E-19 2E-23 119.9 11.3 164 6-247 88-254 (258)
65 KOG2564 Predicted acetyltransf 99.8 1.2E-19 2.6E-24 124.8 6.2 210 6-245 102-327 (343)
66 PF00326 Peptidase_S9: Prolyl 99.8 5.3E-18 1.2E-22 119.4 14.4 187 4-244 12-208 (213)
67 PRK10566 esterase; Provisional 99.8 8.3E-18 1.8E-22 121.5 14.5 61 180-244 180-247 (249)
68 TIGR01839 PHA_synth_II poly(R) 99.7 5.1E-16 1.1E-20 119.6 18.1 211 3-226 244-482 (560)
69 PF12695 Abhydrolase_5: Alpha/ 99.7 1.5E-17 3.2E-22 110.1 8.0 121 4-225 24-145 (145)
70 PF06342 DUF1057: Alpha/beta h 99.7 1.8E-16 4E-21 110.3 13.4 80 4-91 60-140 (297)
71 KOG4667 Predicted esterase [Li 99.7 1.1E-15 2.4E-20 101.5 13.8 182 5-242 61-255 (269)
72 KOG4391 Predicted alpha/beta h 99.7 4.6E-17 9.9E-22 108.2 7.2 171 6-247 106-284 (300)
73 COG0429 Predicted hydrolase of 99.7 2.4E-15 5.1E-20 107.1 13.5 219 4-245 102-340 (345)
74 TIGR03101 hydr2_PEP hydrolase, 99.7 3.7E-16 8E-21 111.7 9.0 77 5-88 55-134 (266)
75 KOG1838 Alpha/beta hydrolase [ 99.7 8.9E-15 1.9E-19 107.9 15.4 220 2-245 150-388 (409)
76 TIGR01849 PHB_depoly_PhaZ poly 99.7 7.1E-15 1.5E-19 110.1 15.0 231 3-244 127-405 (406)
77 PF06500 DUF1100: Alpha/beta h 99.7 2.6E-14 5.7E-19 106.2 17.3 187 4-243 216-407 (411)
78 PLN02442 S-formylglutathione h 99.6 1.2E-14 2.6E-19 106.2 14.7 52 37-88 127-178 (283)
79 COG2945 Predicted hydrolase of 99.6 4.1E-14 8.9E-19 92.6 12.5 146 4-243 58-205 (210)
80 TIGR02821 fghA_ester_D S-formy 99.6 1.3E-13 2.8E-18 100.7 15.4 84 5-88 71-173 (275)
81 PF10230 DUF2305: Uncharacteri 99.6 1.6E-13 3.4E-18 99.0 14.9 87 3-90 29-124 (266)
82 COG3243 PhaC Poly(3-hydroxyalk 99.6 9.1E-14 2E-18 102.1 13.0 217 3-229 136-374 (445)
83 COG1506 DAP2 Dipeptidyl aminop 99.6 1.6E-13 3.5E-18 110.6 14.7 186 4-244 421-615 (620)
84 PRK11460 putative hydrolase; P 99.5 3E-13 6.6E-18 96.0 11.8 58 185-242 148-209 (232)
85 COG4757 Predicted alpha/beta h 99.5 1.9E-13 4.2E-18 92.1 9.1 206 4-242 55-280 (281)
86 TIGR03230 lipo_lipase lipoprot 99.5 1.6E-13 3.5E-18 104.1 9.6 79 5-90 72-156 (442)
87 PLN00021 chlorophyllase 99.5 6.7E-13 1.5E-17 97.7 11.9 77 5-88 78-166 (313)
88 PRK05371 x-prolyl-dipeptidyl a 99.5 5E-12 1.1E-16 103.6 15.8 78 3-88 276-373 (767)
89 PF00975 Thioesterase: Thioest 99.4 1.1E-11 2.4E-16 88.5 14.2 77 3-88 23-104 (229)
90 PF01738 DLH: Dienelactone hyd 99.4 1.1E-12 2.4E-17 92.7 8.9 154 4-246 39-215 (218)
91 PF02230 Abhydrolase_2: Phosph 99.4 4.8E-12 1E-16 89.2 12.0 122 36-243 83-213 (216)
92 TIGR00976 /NonD putative hydro 99.4 5.3E-12 1.2E-16 101.0 12.8 79 4-90 51-134 (550)
93 TIGR01840 esterase_phb esteras 99.4 5.5E-12 1.2E-16 88.6 11.5 84 5-88 42-130 (212)
94 PF06821 Ser_hydrolase: Serine 99.4 1.9E-12 4.1E-17 86.7 8.6 123 34-232 37-160 (171)
95 PF08538 DUF1749: Protein of u 99.4 3.8E-12 8.2E-17 91.0 9.7 75 5-89 62-149 (303)
96 PF05448 AXE1: Acetyl xylan es 99.4 9.8E-11 2.1E-15 86.5 15.6 192 4-243 107-318 (320)
97 cd00707 Pancreat_lipase_like P 99.3 3.5E-12 7.6E-17 92.7 6.5 79 5-90 65-149 (275)
98 KOG2624 Triglyceride lipase-ch 99.3 1.4E-10 3.1E-15 87.2 14.7 242 5-246 105-399 (403)
99 COG3545 Predicted esterase of 99.3 1.5E-10 3.3E-15 75.2 12.7 137 32-244 39-178 (181)
100 COG0400 Predicted esterase [Ge 99.3 7.2E-11 1.6E-15 81.0 11.4 115 36-236 80-200 (207)
101 KOG2565 Predicted hydrolases o 99.3 1.2E-10 2.6E-15 84.4 12.5 75 7-87 189-263 (469)
102 PF05728 UPF0227: Uncharacteri 99.3 2.9E-10 6.2E-15 77.1 12.7 55 33-90 39-93 (187)
103 PRK10162 acetyl esterase; Prov 99.3 2.1E-09 4.5E-14 80.3 18.1 77 5-88 111-195 (318)
104 PRK10115 protease 2; Provision 99.2 9.5E-10 2.1E-14 89.8 16.6 196 3-249 471-680 (686)
105 COG3458 Acetyl esterase (deace 99.2 3.4E-10 7.3E-15 78.7 11.7 190 4-245 107-317 (321)
106 PRK10252 entF enterobactin syn 99.2 3.4E-10 7.4E-15 100.1 14.9 78 2-88 1090-1171(1296)
107 PTZ00472 serine carboxypeptida 99.2 3.5E-09 7.7E-14 82.5 17.9 82 4-90 119-218 (462)
108 PF02129 Peptidase_S15: X-Pro 99.2 4.5E-11 9.7E-16 87.3 6.5 80 4-91 55-139 (272)
109 COG0412 Dienelactone hydrolase 99.2 8.2E-10 1.8E-14 78.3 12.6 139 4-228 52-205 (236)
110 PF08840 BAAT_C: BAAT / Acyl-C 99.2 5.2E-11 1.1E-15 83.2 6.4 51 39-90 5-58 (213)
111 PF11339 DUF3141: Protein of u 99.2 1E-08 2.2E-13 78.1 18.6 60 32-91 114-178 (581)
112 PF09752 DUF2048: Uncharacteri 99.2 1.3E-09 2.9E-14 79.4 13.0 214 3-243 118-347 (348)
113 KOG3043 Predicted hydrolase re 99.2 1.8E-10 4E-15 77.7 7.4 135 5-227 66-211 (242)
114 COG3571 Predicted hydrolase of 99.1 6.9E-09 1.5E-13 66.4 13.7 156 4-245 41-211 (213)
115 KOG3975 Uncharacterized conser 99.1 1.8E-09 4E-14 74.1 10.6 233 5-242 58-300 (301)
116 smart00824 PKS_TE Thioesterase 99.1 1.2E-08 2.7E-13 71.7 13.7 78 2-88 21-102 (212)
117 PF06057 VirJ: Bacterial virul 99.0 1.9E-09 4E-14 71.9 8.4 73 4-88 27-107 (192)
118 KOG4627 Kynurenine formamidase 99.0 1.8E-09 4E-14 71.9 8.1 154 2-230 93-252 (270)
119 PF07859 Abhydrolase_3: alpha/ 99.0 5E-09 1.1E-13 73.8 9.9 74 5-88 28-110 (211)
120 PF03583 LIP: Secretory lipase 99.0 4.1E-08 8.8E-13 72.1 14.8 83 2-89 22-114 (290)
121 PLN02733 phosphatidylcholine-s 99.0 4.3E-10 9.4E-15 86.2 4.6 80 5-90 120-203 (440)
122 PF06028 DUF915: Alpha/beta hy 99.0 7.3E-09 1.6E-13 73.8 9.4 152 34-242 80-252 (255)
123 PF02273 Acyl_transf_2: Acyl t 99.0 3.1E-09 6.6E-14 72.9 7.1 178 4-227 55-239 (294)
124 TIGR03502 lipase_Pla1_cef extr 98.9 6.6E-09 1.4E-13 84.5 8.2 69 5-73 475-575 (792)
125 KOG2100 Dipeptidyl aminopeptid 98.8 7.8E-08 1.7E-12 79.3 11.4 181 4-245 556-747 (755)
126 PF12740 Chlorophyllase2: Chlo 98.8 9.3E-08 2E-12 67.6 9.9 78 4-88 42-131 (259)
127 COG3319 Thioesterase domains o 98.8 3.5E-07 7.5E-12 65.2 12.7 78 3-89 23-104 (257)
128 KOG1553 Predicted alpha/beta h 98.8 2.2E-08 4.8E-13 72.3 6.5 78 3-87 265-344 (517)
129 KOG2551 Phospholipase/carboxyh 98.7 1.5E-07 3.3E-12 63.9 9.4 64 181-247 159-222 (230)
130 KOG1551 Uncharacterized conser 98.7 4.6E-07 1E-11 63.2 11.1 60 188-248 309-369 (371)
131 COG0657 Aes Esterase/lipase [L 98.7 9.1E-07 2E-11 66.3 13.3 77 4-90 108-193 (312)
132 PF00450 Peptidase_S10: Serine 98.7 2.6E-06 5.7E-11 66.5 16.3 83 4-90 83-183 (415)
133 PF03959 FSH1: Serine hydrolas 98.7 1.4E-07 3E-12 66.3 7.8 49 181-230 157-206 (212)
134 PF12146 Hydrolase_4: Putative 98.6 8.5E-08 1.8E-12 55.4 4.6 39 4-48 41-79 (79)
135 PF07819 PGAP1: PGAP1-like pro 98.6 2.4E-07 5.3E-12 65.4 7.5 75 5-89 38-124 (225)
136 KOG2281 Dipeptidyl aminopeptid 98.6 1.2E-06 2.7E-11 68.6 10.7 184 4-244 674-866 (867)
137 COG2936 Predicted acyl esteras 98.6 1.3E-06 2.7E-11 68.5 10.8 82 3-90 77-161 (563)
138 PF10503 Esterase_phd: Esteras 98.5 4.7E-06 1E-10 58.3 11.8 48 41-88 83-132 (220)
139 PRK04940 hypothetical protein; 98.5 2.6E-05 5.6E-10 52.3 14.4 35 53-90 60-94 (180)
140 PF08386 Abhydrolase_4: TAP-li 98.5 5.3E-07 1.2E-11 55.2 6.0 60 185-244 34-93 (103)
141 PF05677 DUF818: Chlamydia CHL 98.5 6.7E-07 1.4E-11 65.1 7.1 61 5-75 170-237 (365)
142 COG4188 Predicted dienelactone 98.4 2.5E-07 5.3E-12 68.2 4.3 57 178-234 244-303 (365)
143 KOG1515 Arylacetamide deacetyl 98.4 6E-06 1.3E-10 61.4 11.3 75 6-90 123-209 (336)
144 PF07224 Chlorophyllase: Chlor 98.4 5.5E-06 1.2E-10 58.1 9.4 78 4-88 71-157 (307)
145 PF10142 PhoPQ_related: PhoPQ- 98.4 4E-06 8.6E-11 62.9 9.1 63 182-247 259-322 (367)
146 PF03403 PAF-AH_p_II: Platelet 98.4 1.1E-06 2.4E-11 67.0 6.0 34 53-87 228-261 (379)
147 KOG3253 Predicted alpha/beta h 98.3 3.4E-06 7.4E-11 65.8 8.0 50 179-228 298-348 (784)
148 PF05705 DUF829: Eukaryotic pr 98.3 8.4E-06 1.8E-10 58.6 9.7 60 183-242 176-240 (240)
149 PF05577 Peptidase_S28: Serine 98.3 3.6E-06 7.7E-11 66.1 8.0 84 6-89 59-149 (434)
150 PF04301 DUF452: Protein of un 98.3 1.7E-05 3.8E-10 54.7 10.2 38 51-90 55-92 (213)
151 KOG2112 Lysophospholipase [Lip 98.2 2.5E-05 5.5E-10 52.9 9.8 121 35-236 70-199 (206)
152 PF12715 Abhydrolase_7: Abhydr 98.1 1.1E-05 2.4E-10 60.2 7.2 81 4-87 158-259 (390)
153 PF00151 Lipase: Lipase; Inte 98.1 1.7E-06 3.6E-11 64.6 3.0 79 5-90 103-189 (331)
154 COG4099 Predicted peptidase [G 98.1 8.5E-06 1.8E-10 58.2 5.5 41 47-87 261-303 (387)
155 PLN02213 sinapoylglucose-malat 98.1 0.00082 1.8E-08 50.5 15.9 59 185-244 233-316 (319)
156 PF05990 DUF900: Alpha/beta hy 98.0 2.7E-05 5.8E-10 55.5 7.2 75 8-88 50-137 (233)
157 PLN03016 sinapoylglucose-malat 98.0 0.00066 1.4E-08 53.0 15.0 59 185-244 347-430 (433)
158 KOG4840 Predicted hydrolases o 98.0 0.00023 5E-09 48.8 10.7 58 33-90 83-146 (299)
159 cd00741 Lipase Lipase. Lipase 97.9 3.4E-05 7.3E-10 51.3 5.3 53 36-88 7-67 (153)
160 PRK10439 enterobactin/ferric e 97.9 8E-05 1.7E-09 57.7 7.6 52 37-88 267-323 (411)
161 PF02450 LCAT: Lecithin:choles 97.8 4.3E-05 9.3E-10 58.9 5.8 52 38-89 101-161 (389)
162 PF00756 Esterase: Putative es 97.8 3.7E-05 7.9E-10 55.8 5.1 51 38-88 97-150 (251)
163 COG1073 Hydrolases of the alph 97.8 7.9E-06 1.7E-10 60.7 1.1 64 180-243 226-295 (299)
164 KOG3847 Phospholipase A2 (plat 97.8 7.1E-05 1.5E-09 54.0 5.6 33 54-87 242-274 (399)
165 PF01674 Lipase_2: Lipase (cla 97.8 4.6E-05 1E-09 53.3 4.5 78 4-86 27-107 (219)
166 COG1770 PtrB Protease II [Amin 97.8 0.0017 3.8E-08 52.0 13.3 59 32-90 504-564 (682)
167 PF01764 Lipase_3: Lipase (cla 97.7 9.9E-05 2.1E-09 48.3 5.4 37 38-74 49-85 (140)
168 COG1075 LipA Predicted acetylt 97.7 0.0001 2.2E-09 55.6 5.8 56 34-89 108-165 (336)
169 COG4287 PqaA PhoPQ-activated p 97.6 0.00056 1.2E-08 50.7 8.3 71 182-255 326-397 (507)
170 COG2819 Predicted hydrolase of 97.6 0.00015 3.3E-09 51.5 4.9 48 41-88 122-172 (264)
171 KOG2183 Prolylcarboxypeptidase 97.5 0.00031 6.7E-09 52.8 6.2 83 6-88 111-202 (492)
172 PF10340 DUF2424: Protein of u 97.5 0.0066 1.4E-07 46.1 12.5 80 6-91 154-238 (374)
173 KOG2182 Hydrolytic enzymes of 97.5 0.00043 9.3E-09 53.4 6.3 83 6-88 118-207 (514)
174 PF12048 DUF3530: Protein of u 97.4 0.0035 7.7E-08 46.8 10.7 41 47-87 187-228 (310)
175 COG4814 Uncharacterized protei 97.4 0.0005 1.1E-08 48.3 5.5 56 34-89 113-177 (288)
176 KOG3101 Esterase D [General fu 97.4 0.00059 1.3E-08 46.6 5.5 38 53-90 141-178 (283)
177 PF11187 DUF2974: Protein of u 97.4 0.0005 1.1E-08 48.6 5.3 36 53-88 84-123 (224)
178 PF05057 DUF676: Putative seri 97.3 0.00043 9.3E-09 48.9 4.4 34 39-72 62-97 (217)
179 cd00519 Lipase_3 Lipase (class 97.3 0.00045 9.8E-09 49.4 4.6 23 52-74 127-149 (229)
180 COG4553 DepA Poly-beta-hydroxy 97.3 0.028 6E-07 40.8 12.9 78 5-90 129-211 (415)
181 COG4782 Uncharacterized protei 97.2 0.0017 3.6E-08 48.3 6.9 81 6-88 146-234 (377)
182 KOG3724 Negative regulator of 97.2 0.00064 1.4E-08 55.4 5.1 57 32-88 148-220 (973)
183 COG0627 Predicted esterase [Ge 97.2 0.00054 1.2E-08 50.9 4.0 57 34-90 127-189 (316)
184 KOG2237 Predicted serine prote 97.2 0.014 3.1E-07 46.9 11.5 88 3-90 496-586 (712)
185 COG2382 Fes Enterochelin ester 97.1 0.01 2.3E-07 43.2 10.0 35 54-88 178-212 (299)
186 PLN02162 triacylglycerol lipas 97.1 0.0012 2.7E-08 51.0 5.7 35 38-72 263-297 (475)
187 PF06259 Abhydrolase_8: Alpha/ 97.1 0.0018 4E-08 43.7 5.8 54 35-88 86-144 (177)
188 PLN00413 triacylglycerol lipas 97.0 0.0018 4E-08 50.2 5.8 35 38-72 269-303 (479)
189 KOG2369 Lecithin:cholesterol a 97.0 0.0013 2.9E-08 50.5 4.8 41 48-88 177-225 (473)
190 PLN02571 triacylglycerol lipas 97.0 0.0013 2.8E-08 50.4 4.6 37 37-73 208-246 (413)
191 PLN02454 triacylglycerol lipas 97.0 0.0014 3.1E-08 50.1 4.8 32 42-73 215-248 (414)
192 COG3509 LpqC Poly(3-hydroxybut 96.9 0.004 8.7E-08 45.1 6.4 54 35-88 124-179 (312)
193 PLN02633 palmitoyl protein thi 96.9 0.0097 2.1E-07 43.7 8.4 58 33-90 72-133 (314)
194 COG3150 Predicted esterase [Ge 96.9 0.0032 7E-08 41.4 5.3 54 33-89 39-92 (191)
195 PF01083 Cutinase: Cutinase; 96.8 0.0029 6.4E-08 43.1 5.0 54 35-88 59-122 (179)
196 PLN02408 phospholipase A1 96.8 0.0025 5.4E-08 48.1 4.7 35 40-74 185-221 (365)
197 PF11288 DUF3089: Protein of u 96.8 0.004 8.6E-08 43.1 5.1 41 34-74 75-116 (207)
198 cd00312 Esterase_lipase Estera 96.8 0.0065 1.4E-07 49.0 7.1 79 6-89 125-214 (493)
199 PLN02517 phosphatidylcholine-s 96.7 0.0036 7.8E-08 50.0 5.2 53 37-89 193-264 (642)
200 PLN02934 triacylglycerol lipas 96.6 0.0041 8.8E-08 48.8 4.8 35 38-72 306-340 (515)
201 PLN02324 triacylglycerol lipas 96.5 0.005 1.1E-07 47.2 4.6 35 39-73 199-235 (415)
202 KOG3967 Uncharacterized conser 96.5 0.0087 1.9E-07 41.1 5.2 82 2-88 140-227 (297)
203 PLN02310 triacylglycerol lipas 96.4 0.0062 1.4E-07 46.7 4.5 36 38-73 190-229 (405)
204 PF05277 DUF726: Protein of un 96.4 0.0064 1.4E-07 45.7 4.5 38 51-88 218-260 (345)
205 PLN02802 triacylglycerol lipas 96.4 0.0066 1.4E-07 47.7 4.6 35 39-73 314-350 (509)
206 PLN02753 triacylglycerol lipas 96.3 0.0076 1.6E-07 47.5 4.5 35 39-73 293-332 (531)
207 PLN02209 serine carboxypeptida 96.2 0.016 3.6E-07 45.5 6.1 59 185-244 351-434 (437)
208 PLN03037 lipase class 3 family 96.2 0.0086 1.9E-07 47.2 4.5 35 39-73 300-338 (525)
209 PLN02761 lipase class 3 family 96.2 0.0096 2.1E-07 46.9 4.5 35 38-72 273-313 (527)
210 PLN02719 triacylglycerol lipas 96.1 0.011 2.3E-07 46.6 4.6 35 39-73 279-318 (518)
211 COG3946 VirJ Type IV secretory 95.9 0.023 5E-07 43.2 5.3 60 5-76 286-349 (456)
212 PF11144 DUF2920: Protein of u 95.8 0.019 4.2E-07 43.8 4.8 35 54-88 185-219 (403)
213 PLN02606 palmitoyl-protein thi 95.8 0.032 6.9E-07 41.1 5.6 57 34-90 74-134 (306)
214 PLN02847 triacylglycerol lipas 95.5 0.03 6.5E-07 45.0 4.9 21 53-73 251-271 (633)
215 PLN02209 serine carboxypeptida 95.5 0.051 1.1E-06 42.8 6.1 80 5-89 116-213 (437)
216 KOG4569 Predicted lipase [Lipi 95.4 0.03 6.4E-07 42.6 4.5 37 37-73 155-191 (336)
217 PF02089 Palm_thioest: Palmito 95.3 0.051 1.1E-06 39.6 5.3 54 36-89 61-117 (279)
218 PF08237 PE-PPE: PE-PPE domain 95.2 0.13 2.7E-06 36.7 6.9 65 6-74 2-69 (225)
219 KOG1282 Serine carboxypeptidas 95.2 0.045 9.7E-07 43.0 4.9 59 186-244 364-447 (454)
220 COG1505 Serine proteases of th 95.2 0.15 3.2E-06 41.2 7.6 86 3-88 447-535 (648)
221 KOG2029 Uncharacterized conser 95.0 0.043 9.3E-07 43.9 4.3 55 34-88 504-572 (697)
222 COG2830 Uncharacterized protei 94.8 0.17 3.8E-06 33.3 6.0 35 53-89 57-91 (214)
223 COG2939 Carboxypeptidase C (ca 94.5 0.1 2.2E-06 41.1 5.2 79 6-89 146-237 (498)
224 PF06850 PHB_depo_C: PHB de-po 94.3 0.085 1.8E-06 36.0 4.0 60 185-244 134-201 (202)
225 PF07519 Tannase: Tannase and 94.3 0.1 2.2E-06 41.7 5.0 88 2-91 55-153 (474)
226 KOG2521 Uncharacterized conser 94.1 0.78 1.7E-05 35.0 8.9 64 185-248 225-293 (350)
227 PF07082 DUF1350: Protein of u 93.8 0.21 4.5E-06 35.7 5.2 34 54-87 91-124 (250)
228 COG4947 Uncharacterized protei 93.1 0.17 3.7E-06 33.8 3.6 36 53-88 101-136 (227)
229 KOG4540 Putative lipase essent 93.0 0.23 5.1E-06 36.1 4.5 33 52-86 275-307 (425)
230 COG5153 CVT17 Putative lipase 93.0 0.23 5.1E-06 36.1 4.5 33 52-86 275-307 (425)
231 COG2272 PnbA Carboxylesterase 92.8 0.2 4.4E-06 39.5 4.3 55 34-88 156-217 (491)
232 TIGR03712 acc_sec_asp2 accesso 92.1 4.7 0.0001 32.3 10.7 48 38-87 340-389 (511)
233 KOG1282 Serine carboxypeptidas 91.9 0.54 1.2E-05 37.3 5.7 85 6-90 117-215 (454)
234 KOG2541 Palmitoyl protein thio 91.7 0.64 1.4E-05 33.7 5.3 56 34-89 71-129 (296)
235 KOG1202 Animal-type fatty acid 91.7 0.52 1.1E-05 41.8 5.6 57 33-89 2161-2220(2376)
236 PF00135 COesterase: Carboxyle 91.4 0.34 7.4E-06 39.6 4.4 56 33-88 183-245 (535)
237 PF05576 Peptidase_S37: PS-10 90.9 0.14 3.1E-06 39.3 1.7 77 8-88 90-169 (448)
238 KOG1283 Serine carboxypeptidas 89.7 1.2 2.5E-05 33.4 5.3 79 7-89 72-167 (414)
239 PF00698 Acyl_transf_1: Acyl t 87.9 0.5 1.1E-05 35.8 2.6 30 44-73 75-104 (318)
240 KOG2385 Uncharacterized conser 87.1 0.69 1.5E-05 36.8 3.0 40 50-89 444-488 (633)
241 smart00827 PKS_AT Acyl transfe 86.6 0.97 2.1E-05 33.9 3.6 31 44-74 73-103 (298)
242 TIGR03131 malonate_mdcH malona 85.9 1.1 2.4E-05 33.5 3.6 31 44-74 67-97 (295)
243 PRK10279 hypothetical protein; 85.7 1.2 2.5E-05 33.5 3.5 37 43-79 23-59 (300)
244 TIGR00128 fabD malonyl CoA-acy 83.5 1.5 3.4E-05 32.6 3.4 30 45-74 74-104 (290)
245 cd07225 Pat_PNPLA6_PNPLA7 Pata 83.3 2.1 4.6E-05 32.3 4.0 32 43-74 33-64 (306)
246 KOG4372 Predicted alpha/beta h 82.7 0.59 1.3E-05 36.0 0.9 33 39-71 136-168 (405)
247 cd07198 Patatin Patatin-like p 82.4 2.5 5.5E-05 28.7 3.9 33 43-75 16-48 (172)
248 cd01714 ETF_beta The electron 82.0 7.3 0.00016 27.4 6.0 52 32-84 89-145 (202)
249 PF05576 Peptidase_S37: PS-10 82.0 3.1 6.8E-05 32.5 4.4 56 185-242 351-411 (448)
250 cd07207 Pat_ExoU_VipD_like Exo 80.7 3.1 6.7E-05 28.9 3.9 31 44-74 18-48 (194)
251 cd07227 Pat_Fungal_NTE1 Fungal 80.0 3.4 7.3E-05 30.5 4.0 32 43-74 28-59 (269)
252 COG1752 RssA Predicted esteras 79.8 3.1 6.6E-05 31.5 3.8 33 43-75 29-61 (306)
253 cd07210 Pat_hypo_W_succinogene 79.7 3.8 8.2E-05 29.3 4.1 30 45-74 20-49 (221)
254 PF07519 Tannase: Tannase and 79.4 2.4 5.1E-05 34.3 3.3 62 183-244 351-426 (474)
255 cd07230 Pat_TGL4-5_like Triacy 78.9 2.8 6.1E-05 33.2 3.5 37 45-81 93-129 (421)
256 TIGR02816 pfaB_fam PfaB family 78.5 2.9 6.2E-05 34.3 3.5 31 44-74 255-286 (538)
257 PF09949 DUF2183: Uncharacteri 77.5 8.9 0.00019 23.4 4.6 44 40-83 52-97 (100)
258 cd07229 Pat_TGL3_like Triacylg 76.4 3.9 8.4E-05 32.0 3.5 38 45-82 103-140 (391)
259 cd07231 Pat_SDP1-like Sugar-De 76.3 4.1 8.8E-05 30.8 3.5 36 46-81 89-124 (323)
260 COG1576 Uncharacterized conser 76.2 12 0.00026 24.8 5.2 53 2-70 63-115 (155)
261 cd07232 Pat_PLPL Patain-like p 75.3 4.2 9E-05 32.2 3.5 37 46-82 88-124 (407)
262 cd07209 Pat_hypo_Ecoli_Z1214_l 75.1 5.7 0.00012 28.2 3.9 33 43-75 16-48 (215)
263 cd07228 Pat_NTE_like_bacteria 75.1 6.1 0.00013 26.9 4.0 31 45-75 20-50 (175)
264 KOG1516 Carboxylesterase and r 74.9 12 0.00027 31.0 6.3 57 32-88 169-232 (545)
265 cd07205 Pat_PNPLA6_PNPLA7_NTE1 71.7 8.7 0.00019 26.1 4.1 30 45-74 20-49 (175)
266 COG0218 Predicted GTPase [Gene 69.2 6.2 0.00014 27.5 2.8 23 182-204 132-154 (200)
267 PF11713 Peptidase_C80: Peptid 67.0 4.8 0.0001 27.0 1.9 50 12-65 59-116 (157)
268 cd07208 Pat_hypo_Ecoli_yjju_li 65.6 12 0.00026 27.6 4.0 33 45-77 18-51 (266)
269 PF02590 SPOUT_MTase: Predicte 65.1 18 0.00039 24.2 4.3 48 3-65 64-111 (155)
270 cd07212 Pat_PNPLA9 Patatin-lik 63.8 17 0.00038 27.6 4.6 19 56-74 35-53 (312)
271 PF09994 DUF2235: Uncharacteri 63.7 36 0.00078 25.4 6.1 40 34-73 71-112 (277)
272 cd07224 Pat_like Patatin-like 63.5 14 0.00031 26.7 3.9 33 43-75 17-51 (233)
273 PF10081 Abhydrolase_9: Alpha/ 62.1 14 0.0003 27.4 3.6 35 54-88 110-147 (289)
274 PF14253 AbiH: Bacteriophage a 61.0 11 0.00023 27.8 3.1 14 52-65 234-247 (270)
275 cd07222 Pat_PNPLA4 Patatin-lik 60.1 16 0.00035 26.6 3.8 22 56-78 34-55 (246)
276 cd07206 Pat_TGL3-4-5_SDP1 Tria 59.7 17 0.00038 27.4 3.9 29 50-78 94-122 (298)
277 PF12242 Eno-Rase_NADH_b: NAD( 58.8 24 0.00051 20.3 3.4 24 51-74 38-61 (78)
278 PF10605 3HBOH: 3HB-oligomer h 58.4 17 0.00036 30.3 3.8 37 55-91 287-324 (690)
279 cd07204 Pat_PNPLA_like Patatin 57.6 21 0.00045 26.1 3.9 20 56-75 34-53 (243)
280 PF00448 SRP54: SRP54-type pro 56.7 27 0.0006 24.4 4.3 65 5-84 82-148 (196)
281 PRK00103 rRNA large subunit me 55.9 49 0.0011 22.3 5.1 31 34-64 80-110 (157)
282 PF03490 Varsurf_PPLC: Variant 55.2 20 0.00044 18.4 2.4 32 32-63 4-36 (51)
283 COG0331 FabD (acyl-carrier-pro 54.9 16 0.00035 27.7 3.1 22 51-72 83-104 (310)
284 PRK10319 N-acetylmuramoyl-l-al 54.7 34 0.00073 25.8 4.7 18 6-24 55-72 (287)
285 cd07218 Pat_iPLA2 Calcium-inde 53.2 27 0.00058 25.6 3.9 20 56-75 33-52 (245)
286 PF15566 Imm18: Immunity prote 53.0 24 0.00052 18.5 2.6 31 36-66 4-34 (52)
287 cd01819 Patatin_and_cPLA2 Pata 52.7 29 0.00064 23.1 3.8 27 45-71 18-46 (155)
288 COG3887 Predicted signaling pr 52.1 43 0.00092 28.0 5.1 48 39-87 322-377 (655)
289 PRK14974 cell division protein 51.9 55 0.0012 25.3 5.5 66 4-84 220-287 (336)
290 PRK04148 hypothetical protein; 51.1 37 0.00079 22.1 3.8 45 38-86 3-47 (134)
291 cd07221 Pat_PNPLA3 Patatin-lik 50.3 32 0.0007 25.3 4.0 22 54-75 33-54 (252)
292 cd07220 Pat_PNPLA2 Patatin-lik 49.8 31 0.00068 25.3 3.8 21 55-75 38-58 (249)
293 PF03681 UPF0150: Uncharacteri 49.0 29 0.00063 17.5 2.7 33 4-48 11-43 (48)
294 PF08484 Methyltransf_14: C-me 48.0 83 0.0018 21.3 5.3 35 52-86 68-102 (160)
295 COG2939 Carboxypeptidase C (ca 47.2 24 0.00051 28.7 3.0 28 216-244 463-490 (498)
296 cd07217 Pat17_PNPLA8_PNPLA9_li 46.1 20 0.00044 27.7 2.5 19 56-74 44-62 (344)
297 COG0796 MurI Glutamate racemas 44.8 96 0.0021 23.1 5.6 59 185-246 5-64 (269)
298 TIGR02813 omega_3_PfaA polyket 44.6 24 0.00053 35.5 3.2 29 44-72 665-693 (2582)
299 PF05577 Peptidase_S28: Serine 44.3 25 0.00055 28.2 2.9 39 186-227 377-415 (434)
300 KOG4389 Acetylcholinesterase/B 44.1 38 0.00081 27.7 3.6 50 41-90 204-257 (601)
301 PLN02752 [acyl-carrier protein 43.6 27 0.00058 27.0 2.9 19 56-74 127-145 (343)
302 cd07211 Pat_PNPLA8 Patatin-lik 43.3 21 0.00046 27.1 2.3 17 56-72 44-60 (308)
303 cd07213 Pat17_PNPLA8_PNPLA9_li 43.0 24 0.00052 26.5 2.5 19 56-74 37-55 (288)
304 PF03283 PAE: Pectinacetyleste 41.5 53 0.0011 25.8 4.1 36 52-87 155-194 (361)
305 PF01734 Patatin: Patatin-like 41.3 41 0.00089 22.9 3.4 21 53-73 27-47 (204)
306 cd00382 beta_CA Carbonic anhyd 41.2 52 0.0011 20.8 3.4 31 38-68 44-74 (119)
307 TIGR00067 glut_race glutamate 41.2 63 0.0014 23.8 4.3 46 201-246 11-57 (251)
308 TIGR01425 SRP54_euk signal rec 40.7 89 0.0019 25.3 5.2 64 5-83 181-246 (429)
309 PRK00865 glutamate racemase; P 40.6 59 0.0013 24.0 4.1 60 186-248 6-66 (261)
310 COG0541 Ffh Signal recognition 39.3 1.2E+02 0.0026 24.6 5.6 65 5-84 181-247 (451)
311 PRK10431 N-acetylmuramoyl-l-al 39.0 85 0.0018 25.5 4.9 16 8-24 192-207 (445)
312 PRK06731 flhF flagellar biosyn 38.6 1.7E+02 0.0036 22.0 6.5 65 5-84 153-219 (270)
313 PRK14194 bifunctional 5,10-met 38.1 71 0.0015 24.3 4.2 34 40-73 143-182 (301)
314 TIGR02069 cyanophycinase cyano 37.8 1.3E+02 0.0029 22.1 5.5 53 189-246 2-56 (250)
315 cd01853 Toc34_like Toc34-like 37.3 75 0.0016 23.3 4.2 17 5-21 77-93 (249)
316 cd03379 beta_CA_cladeD Carboni 37.1 59 0.0013 21.4 3.3 29 38-66 41-69 (142)
317 PRK12467 peptide synthase; Pro 36.9 1.4E+02 0.003 32.4 7.1 73 4-85 3716-3792(3956)
318 TIGR00064 ftsY signal recognit 36.2 1.2E+02 0.0026 22.7 5.2 17 4-20 152-168 (272)
319 cd08769 DAP_dppA_2 Peptidase M 35.9 1.3E+02 0.0028 22.6 5.1 55 182-242 144-200 (270)
320 TIGR00246 tRNA_RlmH_YbeA rRNA 35.7 1.2E+02 0.0025 20.4 4.5 33 33-66 77-109 (153)
321 KOG4150 Predicted ATP-dependen 35.5 1.5E+02 0.0033 25.0 5.8 66 186-251 899-973 (1034)
322 TIGR02354 thiF_fam2 thiamine b 35.1 72 0.0016 22.5 3.7 40 45-87 14-54 (200)
323 PF08197 TT_ORF2a: pORF2a trun 34.7 34 0.00074 16.9 1.4 13 8-20 36-48 (49)
324 COG2230 Cfa Cyclopropane fatty 34.5 90 0.002 23.5 4.2 47 39-86 57-106 (283)
325 PRK15219 carbonic anhydrase; P 34.1 65 0.0014 23.6 3.4 32 39-70 129-160 (245)
326 COG4029 Uncharacterized protei 33.6 1.3E+02 0.0028 19.2 5.9 60 185-247 4-63 (142)
327 KOG2214 Predicted esterase of 33.6 57 0.0012 26.7 3.2 33 51-83 200-232 (543)
328 KOG4231 Intracellular membrane 33.5 69 0.0015 26.3 3.6 28 46-73 438-470 (763)
329 COG4667 Predicted esterase of 33.5 73 0.0016 23.7 3.5 29 54-82 40-69 (292)
330 COG4021 Uncharacterized conser 33.4 1.2E+02 0.0026 21.6 4.3 59 2-61 17-75 (249)
331 cd07216 Pat17_PNPLA8_PNPLA9_li 33.3 30 0.00065 26.3 1.7 17 56-72 45-61 (309)
332 PRK05665 amidotransferase; Pro 33.2 89 0.0019 22.8 4.0 38 34-71 71-108 (240)
333 PF12641 Flavodoxin_3: Flavodo 32.6 1.6E+02 0.0035 19.9 5.5 59 185-243 39-97 (160)
334 PRK02399 hypothetical protein; 32.6 1.5E+02 0.0032 23.8 5.2 49 36-84 76-128 (406)
335 cd07199 Pat17_PNPLA8_PNPLA9_li 32.5 37 0.00081 24.9 2.1 18 56-73 37-54 (258)
336 KOG2492 CDK5 activator-binding 32.2 92 0.002 24.8 4.0 25 38-62 410-434 (552)
337 TIGR00959 ffh signal recogniti 31.7 1.9E+02 0.0042 23.5 5.8 16 4-19 180-195 (428)
338 TIGR03607 patatin-related prot 31.7 87 0.0019 27.4 4.2 22 51-72 64-85 (739)
339 PF01341 Glyco_hydro_6: Glycos 31.2 1E+02 0.0022 23.5 4.0 50 8-58 64-113 (298)
340 cd07214 Pat17_isozyme_like Pat 31.1 37 0.0008 26.4 1.9 18 56-73 46-63 (349)
341 cd00883 beta_CA_cladeA Carboni 30.9 85 0.0018 21.7 3.4 32 39-70 67-98 (182)
342 PF13709 DUF4159: Domain of un 30.7 2E+02 0.0044 20.5 5.4 38 185-222 53-90 (207)
343 PRK15322 invasion protein OrgB 30.2 57 0.0012 22.9 2.4 30 228-259 89-118 (210)
344 PF00484 Pro_CA: Carbonic anhy 30.1 1.7E+02 0.0036 19.4 4.9 34 37-70 39-72 (153)
345 PF06792 UPF0261: Uncharacteri 29.9 1.6E+02 0.0036 23.5 5.1 81 4-84 26-126 (403)
346 COG4813 ThuA Trehalose utiliza 29.9 94 0.002 21.6 3.3 41 185-226 63-105 (261)
347 cd07215 Pat17_PNPLA8_PNPLA9_li 29.9 40 0.00086 25.9 1.9 17 56-72 43-59 (329)
348 PRK11789 N-acetyl-anhydromuran 29.7 64 0.0014 22.5 2.7 26 37-62 133-158 (185)
349 PF00862 Sucrose_synth: Sucros 29.6 1.1E+02 0.0023 25.4 4.0 39 35-73 382-422 (550)
350 PF03405 FA_desaturase_2: Fatt 29.5 43 0.00093 25.7 1.9 68 12-81 231-305 (330)
351 PLN00179 acyl- [acyl-carrier p 29.5 91 0.002 24.5 3.6 69 12-82 288-363 (390)
352 COG3673 Uncharacterized conser 28.9 1.6E+02 0.0035 22.8 4.7 21 53-73 122-142 (423)
353 PLN03019 carbonic anhydrase 28.8 1.2E+02 0.0026 23.5 4.0 32 39-70 201-232 (330)
354 cd07219 Pat_PNPLA1 Patatin-lik 28.7 92 0.002 24.6 3.6 19 55-73 46-64 (382)
355 PRK10867 signal recognition pa 28.5 2.5E+02 0.0054 22.9 6.0 15 5-19 182-196 (433)
356 KOG2182 Hydrolytic enzymes of 27.7 3E+02 0.0066 22.8 6.2 39 185-226 433-471 (514)
357 PRK15450 signal transduction p 27.6 79 0.0017 18.3 2.3 33 194-227 42-74 (85)
358 COG1582 FlgEa Uncharacterized 27.6 1E+02 0.0022 17.0 2.6 38 209-247 23-60 (67)
359 PRK06193 hypothetical protein; 26.5 1.2E+02 0.0026 21.6 3.6 29 34-62 135-165 (206)
360 cd01715 ETF_alpha The electron 26.4 1.4E+02 0.003 20.2 3.8 41 33-74 65-106 (168)
361 cd03145 GAT1_cyanophycinase Ty 26.3 2.5E+02 0.0054 20.1 5.8 54 187-245 1-56 (217)
362 cd06143 PAN2_exo DEDDh 3'-5' e 26.2 83 0.0018 21.7 2.7 12 53-64 101-112 (174)
363 PRK07877 hypothetical protein; 26.1 1.1E+02 0.0024 26.8 3.9 38 48-87 103-140 (722)
364 PF10561 UPF0565: Uncharacteri 26.1 84 0.0018 23.9 2.9 36 53-88 193-244 (303)
365 cd01311 PDC_hydrolase 2-pyrone 26.1 1.6E+02 0.0036 21.7 4.5 46 40-86 30-78 (263)
366 PRK08671 methionine aminopepti 25.9 61 0.0013 24.4 2.3 31 34-64 125-156 (291)
367 cd01014 nicotinamidase_related 25.9 1.1E+02 0.0024 20.3 3.3 47 41-87 88-134 (155)
368 COG3621 Patatin [General funct 25.9 1.4E+02 0.0029 23.2 3.8 37 39-75 23-64 (394)
369 COG0813 DeoD Purine-nucleoside 25.9 1.2E+02 0.0026 21.8 3.4 37 52-90 55-95 (236)
370 PLN03006 carbonate dehydratase 25.8 1E+02 0.0022 23.4 3.3 30 39-68 158-187 (301)
371 PF02882 THF_DHG_CYH_C: Tetrah 25.7 1.9E+02 0.0041 19.6 4.3 35 39-73 19-59 (160)
372 PRK10437 carbonic anhydrase; P 25.7 1.1E+02 0.0024 22.0 3.4 31 40-70 78-108 (220)
373 PF06289 FlbD: Flagellar prote 25.6 89 0.0019 17.1 2.2 36 209-245 23-58 (60)
374 PRK14179 bifunctional 5,10-met 25.6 1.6E+02 0.0034 22.4 4.2 33 41-73 143-181 (284)
375 PF02972 Phycoerythr_ab: Phyco 25.5 56 0.0012 17.3 1.3 13 9-21 5-17 (57)
376 COG1092 Predicted SAM-dependen 25.3 2.1E+02 0.0046 22.9 5.0 50 5-62 289-338 (393)
377 PF13341 RAG2_PHD: RAG2 PHD do 25.1 49 0.0011 18.5 1.2 31 220-250 35-65 (78)
378 cd01088 MetAP2 Methionine Amin 24.9 65 0.0014 24.3 2.2 31 34-64 124-155 (291)
379 PRK06490 glutamine amidotransf 24.7 1.5E+02 0.0032 21.7 3.9 35 37-71 69-103 (239)
380 PF11009 DUF2847: Protein of u 24.5 1.9E+02 0.004 18.1 3.9 34 41-74 8-41 (105)
381 PF01973 MAF_flag10: Protein o 24.4 1.2E+02 0.0027 20.5 3.4 26 38-63 141-166 (170)
382 PRK13938 phosphoheptose isomer 24.3 2.2E+02 0.0049 20.0 4.6 24 52-75 45-68 (196)
383 cd01985 ETF The electron trans 24.0 1.7E+02 0.0036 20.1 4.0 42 32-74 72-114 (181)
384 COG0288 CynT Carbonic anhydras 23.9 99 0.0021 22.0 2.8 34 37-70 76-109 (207)
385 PLN03014 carbonic anhydrase 23.9 1.7E+02 0.0038 22.8 4.2 31 39-69 206-236 (347)
386 PLN02733 phosphatidylcholine-s 23.8 68 0.0015 26.0 2.2 53 192-248 373-425 (440)
387 PF00070 Pyr_redox: Pyridine n 23.8 74 0.0016 18.1 1.9 31 54-87 1-31 (80)
388 KOG2248 3'-5' exonuclease [Rep 23.6 98 0.0021 24.5 3.0 43 41-85 281-324 (380)
389 PRK05368 homoserine O-succinyl 23.6 1E+02 0.0022 23.5 3.0 31 43-73 124-154 (302)
390 cd00884 beta_CA_cladeB Carboni 23.5 1.4E+02 0.0031 20.9 3.5 32 39-70 73-104 (190)
391 COG3007 Uncharacterized paraqu 23.4 2.6E+02 0.0056 21.4 4.8 43 33-75 17-64 (398)
392 TIGR03169 Nterm_to_SelD pyridi 23.4 87 0.0019 24.4 2.8 34 54-87 1-34 (364)
393 PF01221 Dynein_light: Dynein 23.3 1.3E+02 0.0027 17.9 2.8 32 35-66 34-66 (89)
394 PF03575 Peptidase_S51: Peptid 23.3 57 0.0012 21.7 1.5 13 55-67 70-82 (154)
395 PRK09822 lipopolysaccharide co 23.2 1.3E+02 0.0028 21.9 3.2 45 14-64 153-197 (269)
396 cd06583 PGRP Peptidoglycan rec 23.0 1.7E+02 0.0036 18.3 3.6 31 34-64 86-117 (126)
397 PRK08644 thiamine biosynthesis 22.8 2.9E+02 0.0063 19.7 5.1 51 34-87 5-61 (212)
398 cd03131 GATase1_HTS Type 1 glu 22.7 33 0.00072 23.6 0.3 35 39-73 83-117 (175)
399 PRK15416 lipopolysaccharide co 22.6 1.1E+02 0.0024 21.7 2.8 21 44-64 143-163 (201)
400 PLN00416 carbonate dehydratase 22.5 2.5E+02 0.0053 21.0 4.6 32 39-70 126-157 (258)
401 COG4075 Uncharacterized conser 22.3 1.5E+02 0.0033 18.0 2.9 42 9-60 31-72 (110)
402 cd05007 SIS_Etherase N-acetylm 22.2 2.9E+02 0.0063 20.5 5.1 25 52-76 49-73 (257)
403 PF00091 Tubulin: Tubulin/FtsZ 22.0 1.5E+02 0.0033 21.1 3.6 18 51-68 122-139 (216)
404 PF04446 Thg1: tRNAHis guanyly 21.9 2.2E+02 0.0047 18.7 3.8 57 3-61 17-73 (135)
405 PRK03363 fixB putative electro 21.7 2.8E+02 0.006 21.4 4.9 41 34-74 62-103 (313)
406 PRK03482 phosphoglycerate muta 21.6 2.9E+02 0.0064 19.5 4.9 36 33-70 119-158 (215)
407 PRK14188 bifunctional 5,10-met 21.6 2.1E+02 0.0045 21.9 4.2 34 40-73 142-181 (296)
408 PF02633 Creatininase: Creatin 21.4 2.8E+02 0.0061 20.1 4.9 38 35-72 83-120 (237)
409 PRK06072 enoyl-CoA hydratase; 21.2 2.7E+02 0.0058 20.4 4.7 16 59-74 98-113 (248)
410 PRK07281 methionine aminopepti 21.2 1.4E+02 0.003 22.6 3.3 28 36-63 174-202 (286)
411 PF01751 Toprim: Toprim domain 21.2 1.5E+02 0.0033 17.8 3.0 34 202-235 9-42 (100)
412 KOG2486 Predicted GTPase [Gene 21.1 1.6E+02 0.0034 22.3 3.4 19 6-24 182-200 (320)
413 TIGR00501 met_pdase_II methion 20.9 83 0.0018 23.8 2.1 31 34-64 128-159 (295)
414 PLN00022 electron transfer fla 20.9 4E+02 0.0087 21.1 5.7 42 32-74 98-140 (356)
415 COG5023 Tubulin [Cytoskeleton] 20.9 2.3E+02 0.0049 22.5 4.2 52 37-88 110-173 (443)
416 PRK14046 malate--CoA ligase su 20.8 63 0.0014 25.7 1.5 31 53-83 119-149 (392)
417 PF01012 ETF: Electron transfe 20.8 2.4E+02 0.0052 18.9 4.2 40 33-73 72-112 (164)
418 PRK10416 signal recognition pa 20.7 3.6E+02 0.0078 20.8 5.4 60 3-74 193-255 (318)
419 PLN02154 carbonic anhydrase 20.6 1.8E+02 0.0039 22.1 3.6 32 39-70 152-183 (290)
420 cd01012 YcaC_related YcaC rela 20.5 2.3E+02 0.0049 18.9 4.0 46 42-87 78-123 (157)
421 PF00857 Isochorismatase: Isoc 20.5 1.4E+02 0.003 20.1 3.0 47 41-87 101-147 (174)
422 PRK12726 flagellar biosynthesi 20.3 4.7E+02 0.01 21.2 6.0 64 5-83 284-349 (407)
423 COG4850 Uncharacterized conser 20.2 2.1E+02 0.0046 22.2 3.9 44 43-87 268-314 (373)
424 COG1087 GalE UDP-glucose 4-epi 20.2 2.3E+02 0.0049 21.9 4.0 84 2-91 20-123 (329)
425 TIGR03127 RuMP_HxlB 6-phospho 20.0 2.6E+02 0.0057 19.0 4.3 22 52-73 30-51 (179)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.9e-38 Score=234.09 Aligned_cols=243 Identities=72% Similarity=1.238 Sum_probs=164.5
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|++.|+|+++|+||||.|+.+..........++++++++++.+++++++.++++++||||||.+++.+|.++|++|+++
T Consensus 51 ~L~~~~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l 130 (294)
T PLN02824 51 VLAKSHRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGV 130 (294)
T ss_pred HHHhCCeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEE
Confidence 36678999999999999998764211111136899999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++..........+.........+...+........+.............+...+........+..+.+.........
T Consensus 131 ili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (294)
T PLN02824 131 MLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGA 210 (294)
T ss_pred EEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchH
Confidence 99998653221111111111112222222211111222222222333334444333433334445555555444433333
Q ss_pred HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHh
Q 024971 162 ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHT 241 (260)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~ 241 (260)
...+..+..........+.++++++|+++|+|++|.+++.+..+.+.+..+++++++++++||+++.|+|+++++.|.+|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~f 290 (294)
T PLN02824 211 VDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESF 290 (294)
T ss_pred HHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHH
Confidence 33333333222222223557889999999999999999999998888888889999999999999999999999999999
Q ss_pred hhh
Q 024971 242 LSY 244 (260)
Q Consensus 242 l~~ 244 (260)
++.
T Consensus 291 l~~ 293 (294)
T PLN02824 291 VAR 293 (294)
T ss_pred Hhc
Confidence 964
No 2
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.3e-35 Score=222.14 Aligned_cols=239 Identities=34% Similarity=0.570 Sum_probs=154.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHh-hCccchhh
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV-MEPEICRG 80 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~-~~p~~v~~ 80 (260)
.|+++|+|+++|+||||.|+.+. ...++++++++++.+++++++.++++|+||||||.+++.++. .+|++|++
T Consensus 110 ~L~~~~~via~Dl~G~G~S~~~~------~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~ 183 (360)
T PLN02679 110 VLAKNYTVYAIDLLGFGASDKPP------GFSYTMETWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRG 183 (360)
T ss_pred HHhcCCEEEEECCCCCCCCCCCC------CccccHHHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCE
Confidence 46789999999999999998764 246899999999999999999999999999999999999887 47999999
Q ss_pred ceEeccCccccccCCCC-CCCc---chhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccC
Q 024971 81 MILLNISLRMLHIKKQP-WYGR---PLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPG 156 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (260)
+|++++........... +... .....+............++........+...+...+.......++....+....
T Consensus 184 LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T PLN02679 184 LVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPA 263 (360)
T ss_pred EEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhc
Confidence 99999864321100000 0000 0000000000111111111111122223333333333333334445544443332
Q ss_pred CccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHH-----HHHhhccCCCccEEEeCCCCCCcchhch
Q 024971 157 LETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEL-----GRAYGNFDSVEDFIVLPNVGHCPQVSLY 231 (260)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~gH~~~~~~p 231 (260)
........+..........+....+.++++|+|+++|++|.++|.+. .+.+.+.++++++++++++||++++|+|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~P 343 (360)
T PLN02679 264 DDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRP 343 (360)
T ss_pred cCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCH
Confidence 33333333333322111122234577899999999999999998763 2456677899999999999999999999
Q ss_pred hHHHHHHHHhhhhcc
Q 024971 232 LSLSSACLHTLSYLH 246 (260)
Q Consensus 232 ~~~~~~i~~~l~~~~ 246 (260)
+++++.|.+|++.+.
T Consensus 344 e~~~~~I~~FL~~~~ 358 (360)
T PLN02679 344 DLVHEKLLPWLAQLP 358 (360)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998654
No 3
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=7.6e-34 Score=207.67 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=144.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+. ..++++++++++.+++++++.++++|+||||||.+++.+|.++|++|+++
T Consensus 47 ~L~~~~~vi~~Dl~G~G~S~~~~-------~~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 47 ALDPDLEVIAFDVPGVGGSSTPR-------HPYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred HhccCceEEEECCCCCCCCCCCC-------CcCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 47789999999999999998654 46799999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++.......... . .......... . +............. +.......++..............
T Consensus 120 vl~~~~~~~~~~~~~-----~--~~~~~~~~~~---~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 184 (276)
T TIGR02240 120 ILAATAAGAVMVPGK-----P--KVLMMMASPR---R-YIQPSHGIHIAPDI----YGGAFRRDPELAMAHASKVRSGGK 184 (276)
T ss_pred EEeccCCccccCCCc-----h--hHHHHhcCch---h-hhccccccchhhhh----ccceeeccchhhhhhhhhcccCCC
Confidence 999987542100000 0 0000000000 0 00000000000000 000000011111111111111111
Q ss_pred HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHh
Q 024971 162 ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHT 241 (260)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~ 241 (260)
............ ......++++++|+++|+|++|.+++++..+.+.+..++++++++++ ||+++.|+|+++++.|.+|
T Consensus 185 ~~~~~~~~~~~~-~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~f 262 (276)
T TIGR02240 185 LGYYWQLFAGLG-WTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKF 262 (276)
T ss_pred chHHHHHHHHcC-CchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHH
Confidence 111111111111 11134578899999999999999999999999999999999999985 9999999999999999999
Q ss_pred hhhccc
Q 024971 242 LSYLHT 247 (260)
Q Consensus 242 l~~~~~ 247 (260)
++..+.
T Consensus 263 l~~~~~ 268 (276)
T TIGR02240 263 LAEERQ 268 (276)
T ss_pred HHHhhh
Confidence 987544
No 4
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=1.4e-33 Score=203.79 Aligned_cols=221 Identities=16% Similarity=0.112 Sum_probs=140.8
Q ss_pred C-CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC-CceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 3 L-AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-DQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 3 L-~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
| +++|+|+++|+||||.|+.+. ...++++++++|+.++++.++. ++++++||||||.+++.+|.++|++|++
T Consensus 26 L~~~~~~via~Dl~G~G~S~~~~------~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~ 99 (255)
T PLN02965 26 LDAAGFKSTCVDLTGAGISLTDS------NTVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKISM 99 (255)
T ss_pred HhhCCceEEEecCCcCCCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchheeE
Confidence 5 568999999999999997654 2357899999999999999987 4999999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHH-hcChH---HH-HHHHHhccCCCCcccH-HHHHHHhc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKM-VATSE---SV-RNILCQCYNDTSQVTE-ELVEKILQ 154 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 154 (260)
+|++++......... ............ ......... ..... .. .......+........ ........
T Consensus 100 lvl~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (255)
T PLN02965 100 AIYVAAAMVKPGSII----SPRLKNVMEGTE---KIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLR 172 (255)
T ss_pred EEEEccccCCCCCCc----cHHHHhhhhccc---cceeeeeccCCCCCcchhhcCHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 999998632110000 000000000000 000000000 00000 00 0000000000000000 00001110
Q ss_pred cCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHH
Q 024971 155 PGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSL 234 (260)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~ 234 (260)
. .....+.... .....+.++++|+++++|++|.++|++..+.+.+.++++++++++++||++++|+|+++
T Consensus 173 ~----~~~~~~~~~~------~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v 242 (255)
T PLN02965 173 P----APVRAFQDLD------KLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTL 242 (255)
T ss_pred C----CCCcchhhhh------hccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHH
Confidence 0 0000010000 01224557899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 024971 235 SSACLHTLSYLH 246 (260)
Q Consensus 235 ~~~i~~~l~~~~ 246 (260)
++.|.+|+++++
T Consensus 243 ~~~l~~~~~~~~ 254 (255)
T PLN02965 243 FQYLLQAVSSLQ 254 (255)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 5
>PLN02578 hydrolase
Probab=100.00 E-value=1.3e-32 Score=207.05 Aligned_cols=233 Identities=29% Similarity=0.532 Sum_probs=155.3
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+. ..++.+.+++++.++++.++.++++++|||+||.+++.+|.++|++|+++
T Consensus 108 ~l~~~~~v~~~D~~G~G~S~~~~-------~~~~~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 108 ELAKKYKVYALDLLGFGWSDKAL-------IEYDAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred HHhcCCEEEEECCCCCCCCCCcc-------cccCHHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 36788999999999999998765 46899999999999999999899999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCC----Ccch-----hHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHH
Q 024971 82 ILLNISLRMLHIKKQPWY----GRPL-----IRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKI 152 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (260)
|++++............. .... ............ ....+.....+..........+.......+...+.+
T Consensus 181 vLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 181 ALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVV-LGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 999886543211110000 0000 000000000000 000011112222233333333333333444444444
Q ss_pred hccCCccchHHHHHHHHhh----hCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcch
Q 024971 153 LQPGLETGAADVFLEFICY----SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQV 228 (260)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 228 (260)
............+...... .......+.++++++|+++|+|++|.+++.+..+.+.+..|+.+++++ ++||+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p~a~l~~i-~~GH~~~~ 338 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGPAKAEKIKAFYPDTTLVNL-QAGHCPHD 338 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEe-CCCCCccc
Confidence 3333333333333332211 112222456788999999999999999999999999999999999999 58999999
Q ss_pred hchhHHHHHHHHhhh
Q 024971 229 SLYLSLSSACLHTLS 243 (260)
Q Consensus 229 ~~p~~~~~~i~~~l~ 243 (260)
|+|+++++.|.+|++
T Consensus 339 e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 339 EVPEQVNKALLEWLS 353 (354)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999985
No 6
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=197.49 Aligned_cols=235 Identities=21% Similarity=0.281 Sum_probs=151.2
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEe
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~ 84 (260)
.||+|+|+|+||+|.|+.+.. ...|++..++.|+..++++++.++++++||+||+++|+.+|..+|++|+++|.+
T Consensus 70 ~~~rviA~DlrGyG~Sd~P~~-----~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~ 144 (322)
T KOG4178|consen 70 RGYRVIAPDLRGYGFSDAPPH-----ISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTL 144 (322)
T ss_pred cceEEEecCCCCCCCCCCCCC-----cceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEEEe
Confidence 469999999999999999885 378999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCCCCcchhHHHhh-hhhhhhhHHHHHHHhcChHHHHHHHHhccC-----------CCCcccHHHHHHH
Q 024971 85 NISLRMLHIKKQPWYGRPLIRSFQN-LLRNTAAGKLFYKMVATSESVRNILCQCYN-----------DTSQVTEELVEKI 152 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 152 (260)
+.+...+...........+...... ..+........+.....+.....+...... .......+..+.+
T Consensus 145 nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~ 224 (322)
T KOG4178|consen 145 NVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFY 224 (322)
T ss_pred cCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHH
Confidence 9876522111111000000011100 011111111111111111111111111000 0112334444444
Q ss_pred hccCCcc---chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChH-HHHHhhccCCCc-cEEEeCCCCCCcc
Q 024971 153 LQPGLET---GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIE-LGRAYGNFDSVE-DFIVLPNVGHCPQ 227 (260)
Q Consensus 153 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~-~~~~~~~~gH~~~ 227 (260)
....... +..+.+.++..... .....+.++++|+++++|+.|.+.+.. ..+.+.+..++. +.++++|+||+++
T Consensus 225 ~~~f~~~g~~gplNyyrn~~r~w~--a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vq 302 (322)
T KOG4178|consen 225 VSKFQIDGFTGPLNYYRNFRRNWE--AAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQ 302 (322)
T ss_pred HhccccccccccchhhHHHhhCch--hccccccccccceEEEEecCcccccchhHHHHHHHhhccccceEEecCCccccc
Confidence 4443222 23333443333221 113457789999999999999988766 344455667765 7888999999999
Q ss_pred hhchhHHHHHHHHhhhhcc
Q 024971 228 VSLYLSLSSACLHTLSYLH 246 (260)
Q Consensus 228 ~~~p~~~~~~i~~~l~~~~ 246 (260)
.|+|+++++.+.+|++...
T Consensus 303 qe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 303 QEKPQEVNQAILGFINSFS 321 (322)
T ss_pred ccCHHHHHHHHHHHHHhhc
Confidence 9999999999999998754
No 7
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=4.1e-33 Score=205.82 Aligned_cols=231 Identities=19% Similarity=0.206 Sum_probs=142.6
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|++.|+|+++|+||||.|+.+. ..++++++++|+.+++++++.++++++||||||.+|+.++.++|++|+++
T Consensus 49 ~L~~~~~via~D~~G~G~S~~~~-------~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 121 (295)
T PRK03592 49 HLAGLGRCLAPDLIGMGASDKPD-------IDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGI 121 (295)
T ss_pred HHhhCCEEEEEcCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEE
Confidence 46677899999999999998765 35799999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++......... .... .......+.......... ..........+.... .....++....+.........
T Consensus 122 il~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 193 (295)
T PRK03592 122 AFMEAIVRPMTWDD---FPPA-VRELFQALRSPGEGEEMV--LEENVFIERVLPGSI--LRPLSDEEMAVYRRPFPTPES 193 (295)
T ss_pred EEECCCCCCcchhh---cchh-HHHHHHHHhCcccccccc--cchhhHHhhcccCcc--cccCCHHHHHHHHhhcCCchh
Confidence 99998532211000 0000 011111111100000000 000000111111100 011222322222221111111
Q ss_pred HHHHHHHHhhhC-----------CCCCCccCCCCCCCEEEEecCCCCCCChHHHHH-hhccCCCccEEEeCCCCCCcchh
Q 024971 162 ADVFLEFICYSG-----------GPLPEELLPQVKCPVLIAWGDKDPWEPIELGRA-YGNFDSVEDFIVLPNVGHCPQVS 229 (260)
Q Consensus 162 ~~~~~~~~~~~~-----------~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~gH~~~~~ 229 (260)
......+..... .......+.++++|+|+|+|++|.++++..... +.+..+++++++++++||+++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e 273 (295)
T PRK03592 194 RRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQED 273 (295)
T ss_pred hhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhc
Confidence 111111110000 001123467889999999999999995554444 45567889999999999999999
Q ss_pred chhHHHHHHHHhhhhccc
Q 024971 230 LYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 230 ~p~~~~~~i~~~l~~~~~ 247 (260)
+|+++++.|.+|++....
T Consensus 274 ~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 274 SPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999986543
No 8
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=1.3e-31 Score=194.07 Aligned_cols=218 Identities=18% Similarity=0.174 Sum_probs=135.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+... .++++++++++.+ +..++++++||||||.+++.+|.++|++|+++
T Consensus 35 ~L~~~~~vi~~Dl~G~G~S~~~~--------~~~~~~~~~~l~~----~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 102 (256)
T PRK10349 35 ELSSHFTLHLVDLPGFGRSRGFG--------ALSLADMAEAVLQ----QAPDKAIWLGWSLGGLVASQIALTHPERVQAL 102 (256)
T ss_pred HHhcCCEEEEecCCCCCCCCCCC--------CCCHHHHHHHHHh----cCCCCeEEEEECHHHHHHHHHHHhChHhhheE
Confidence 46788999999999999997532 4678888777654 45689999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHH--HHhccCCcc
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVE--KILQPGLET 159 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 159 (260)
|++++.+..................+...+.. ........++................ .........
T Consensus 103 ili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T PRK10349 103 VTVASSPCFSARDEWPGIKPDVLAGFQQQLSD-----------DFQRTVERFLALQTMGTETARQDARALKKTVLALPMP 171 (256)
T ss_pred EEecCccceecCCCCCcccHHHHHHHHHHHHh-----------chHHHHHHHHHHHHccCchHHHHHHHHHHHhhccCCC
Confidence 99998644321111110000001111100000 00011111111100001111111111 011111111
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
. ..............+..+.+.++++|+++++|++|.++|.+..+.+.+.++++++++++++||++++|+|++|++.+.
T Consensus 172 ~-~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~ 250 (256)
T PRK10349 172 E-VDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLV 250 (256)
T ss_pred c-HHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHH
Confidence 1 111111111111223345678899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 024971 240 HTLS 243 (260)
Q Consensus 240 ~~l~ 243 (260)
+|-+
T Consensus 251 ~~~~ 254 (256)
T PRK10349 251 ALKQ 254 (256)
T ss_pred HHhc
Confidence 8854
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=1.6e-31 Score=196.51 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=137.8
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
++||+|+++|+||||.|+.... .......+++++.++++.++.++++++||||||.+++.+|.++|++|+++|+
T Consensus 58 ~~~~~vi~~D~~G~G~S~~~~~------~~~~~~~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl 131 (282)
T TIGR03343 58 DAGYRVILKDSPGFNKSDAVVM------DEQRGLVNARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLIL 131 (282)
T ss_pred hCCCEEEEECCCCCCCCCCCcC------cccccchhHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhceEEE
Confidence 4689999999999999986542 1112225688999999999999999999999999999999999999999999
Q ss_pred eccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCc-cchH
Q 024971 84 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLE-TGAA 162 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (260)
+++....... .... ............... .....................+..+........ ....
T Consensus 132 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (282)
T TIGR03343 132 MGPGGLGPSL-FAPM-PMEGIKLLFKLYAEP-----------SYETLKQMLNVFLFDQSLITEELLQGRWENIQRQPEHL 198 (282)
T ss_pred ECCCCCCccc-cccC-chHHHHHHHHHhcCC-----------CHHHHHHHHhhCccCcccCcHHHHHhHHHHhhcCHHHH
Confidence 9975321100 0000 000000010000000 001111111111111111122221111110000 0000
Q ss_pred HHHHHHHhh--hCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHH
Q 024971 163 DVFLEFICY--SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLH 240 (260)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~ 240 (260)
..+...... .........++++++|+++++|++|.+++++..+.+.+.+|++++++++++||+++.|+|+++++.|.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~ 278 (282)
T TIGR03343 199 KNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVID 278 (282)
T ss_pred HHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHH
Confidence 111100000 001111345778999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 024971 241 TLS 243 (260)
Q Consensus 241 ~l~ 243 (260)
|++
T Consensus 279 fl~ 281 (282)
T TIGR03343 279 FLR 281 (282)
T ss_pred Hhh
Confidence 985
No 10
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=2.2e-31 Score=192.99 Aligned_cols=214 Identities=16% Similarity=0.176 Sum_probs=140.2
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|..+. .++++++++|+.+++++++.++++++||||||.+++.+|.++|++|+++
T Consensus 38 ~l~~~~~vi~~D~~G~G~s~~~~--------~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~l 109 (255)
T PRK10673 38 DLVNDHDIIQVDMRNHGLSPRDP--------VMNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKL 109 (255)
T ss_pred HHhhCCeEEEECCCCCCCCCCCC--------CCCHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcceE
Confidence 36789999999999999998643 4799999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc--
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET-- 159 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 159 (260)
|++++.+.... ..........+...... ...........+..... ...............
T Consensus 110 vli~~~~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 171 (255)
T PRK10673 110 VAIDIAPVDYH----VRRHDEIFAAINAVSEA---------GATTRQQAAAIMRQHLN-----EEGVIQFLLKSFVDGEW 171 (255)
T ss_pred EEEecCCCCcc----chhhHHHHHHHHHhhhc---------ccccHHHHHHHHHHhcC-----CHHHHHHHHhcCCccee
Confidence 99986532110 00000000000000000 00000000111111000 001111111000000
Q ss_pred -chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHH
Q 024971 160 -GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSAC 238 (260)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i 238 (260)
.........+.... ....++++++|+|+|+|++|..++.+..+.+.+..+++++++++++||++++++|+++++.|
T Consensus 172 ~~~~~~~~~~~~~~~---~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l 248 (255)
T PRK10673 172 RFNVPVLWDQYPHIV---GWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAI 248 (255)
T ss_pred EeeHHHHHHhHHHHh---CCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHH
Confidence 00111111111111 12356778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 024971 239 LHTLSY 244 (260)
Q Consensus 239 ~~~l~~ 244 (260)
.+|++.
T Consensus 249 ~~fl~~ 254 (255)
T PRK10673 249 RRYLND 254 (255)
T ss_pred HHHHhc
Confidence 999863
No 11
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=4e-31 Score=194.13 Aligned_cols=229 Identities=17% Similarity=0.155 Sum_probs=143.3
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+. ...++++++++|+.+++++++.++++++||||||.+++.+|.++|++++++
T Consensus 50 ~l~~~~~vi~~D~~G~G~S~~~~------~~~~~~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 123 (278)
T TIGR03056 50 PLARSFRVVAPDLPGHGFTRAPF------RFRFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMV 123 (278)
T ss_pred HHhhCcEEEeecCCCCCCCCCcc------ccCCCHHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceE
Confidence 46788999999999999998765 246899999999999999999899999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++......... .. ..+...... ............................. .........+.........
T Consensus 124 v~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 196 (278)
T TIGR03056 124 VGINAALMPFEGMA-GT-LFPYMARVL--ACNPFTPPMMSRGAADQQRVERLIRDTGS---LLDKAGMTYYGRLIRSPAH 196 (278)
T ss_pred EEEcCccccccccc-cc-ccchhhHhh--hhcccchHHHHhhcccCcchhHHhhcccc---ccccchhhHHHHhhcCchh
Confidence 99988643211000 00 000000000 00000000000000011111111111000 0011111111100000000
Q ss_pred HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHh
Q 024971 162 ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHT 241 (260)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~ 241 (260)
...................++++++|+++++|++|.++|.+..+.+.+..+++++++++++||+++.|.|+++++.|.+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f 276 (278)
T TIGR03056 197 VDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQA 276 (278)
T ss_pred hhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHH
Confidence 11111111111111113457788999999999999999999999999889999999999999999999999999999999
Q ss_pred hh
Q 024971 242 LS 243 (260)
Q Consensus 242 l~ 243 (260)
++
T Consensus 277 ~~ 278 (278)
T TIGR03056 277 AE 278 (278)
T ss_pred hC
Confidence 74
No 12
>PRK06489 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-31 Score=199.20 Aligned_cols=237 Identities=19% Similarity=0.184 Sum_probs=141.4
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH-HhhcCCceE-EEEeChhhHHHHHHHhhCccchhhc
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFC-KDVVKDQAF-FICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
+++|+|+++|+||||.|+.+..........++++++++++.+++ +++++++++ ++||||||.+|+.+|.++|++|+++
T Consensus 103 ~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~L 182 (360)
T PRK06489 103 ASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDAL 182 (360)
T ss_pred ccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhhee
Confidence 68899999999999999865421000002478999999988854 889999985 8999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcch-hHHHhhhhh----h-h--h-hHHHHHHH---hcChHHHHHHHHhccCCCCcccHHHH
Q 024971 82 ILLNISLRMLHIKKQPWYGRPL-IRSFQNLLR----N-T--A-AGKLFYKM---VATSESVRNILCQCYNDTSQVTEELV 149 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~-~--~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (260)
|++++.+..... ..+..... ......... . . . ........ ........ ... ............
T Consensus 183 VLi~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 257 (360)
T PRK06489 183 MPMASQPTEMSG--RNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLA--YQA-QAPTRAAADKLV 257 (360)
T ss_pred eeeccCcccccH--HHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHH--HHH-hcCChHHHHHHH
Confidence 999875321100 00000000 000000000 0 0 0 00000000 00000000 000 000000011111
Q ss_pred HHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHH--HHhhccCCCccEEEeCCC----C
Q 024971 150 EKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELG--RAYGNFDSVEDFIVLPNV----G 223 (260)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~----g 223 (260)
........... ...+..........+..+.+++|++|+|+|+|++|.++|++.. +.+.+.+|++++++++++ |
T Consensus 258 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~G 336 (360)
T PRK06489 258 DERLAAPVTAD-ANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRG 336 (360)
T ss_pred HHHHHhhhhcC-HHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCC
Confidence 21111111111 1122111222222233567889999999999999999998865 778888999999999986 9
Q ss_pred CCcchhchhHHHHHHHHhhhhccc
Q 024971 224 HCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 224 H~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
|.++ ++|+++++.|.+|++.+.+
T Consensus 337 H~~~-e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 337 HGTT-GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred cccc-cCHHHHHHHHHHHHHhccc
Confidence 9997 8999999999999987754
No 13
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.98 E-value=2.3e-31 Score=197.00 Aligned_cols=218 Identities=20% Similarity=0.243 Sum_probs=135.1
Q ss_pred CC-CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 3 LA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 3 L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
|+ +||+|+++|+||||.|+.+.. ...++++++++++.+++++++.++++++||||||.+++.+|.++|++|+++
T Consensus 69 L~~~gy~vi~~Dl~G~G~S~~~~~-----~~~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~l 143 (302)
T PRK00870 69 LAAAGHRVIAPDLIGFGRSDKPTR-----REDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARL 143 (302)
T ss_pred HHhCCCEEEEECCCCCCCCCCCCC-----cccCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEE
Confidence 54 589999999999999976542 135799999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++......... . .....+......... . .....+.... ......+....+.........
T Consensus 144 vl~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~--~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 205 (302)
T PRK00870 144 VVANTGLPTGDGPM----P-DAFWAWRAFSQYSPV--L---------PVGRLVNGGT--VRDLSDAVRAAYDAPFPDESY 205 (302)
T ss_pred EEeCCCCCCccccc----h-HHHhhhhcccccCch--h---------hHHHHhhccc--cccCCHHHHHHhhcccCChhh
Confidence 99987532110000 0 000000000000000 0 0000000000 000111111111000000000
Q ss_pred HHHHHHHHhhh--C--------CCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCcc---EEEeCCCCCCcch
Q 024971 162 ADVFLEFICYS--G--------GPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED---FIVLPNVGHCPQV 228 (260)
Q Consensus 162 ~~~~~~~~~~~--~--------~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~gH~~~~ 228 (260)
........... . .......+.++++|+++|+|++|.++|... +.+.+.+++++ +++++++||++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~ 284 (302)
T PRK00870 206 KAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQE 284 (302)
T ss_pred hcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchh
Confidence 00000000000 0 000013467899999999999999999766 77888888776 8899999999999
Q ss_pred hchhHHHHHHHHhhhh
Q 024971 229 SLYLSLSSACLHTLSY 244 (260)
Q Consensus 229 ~~p~~~~~~i~~~l~~ 244 (260)
|+|+++++.|.+|++.
T Consensus 285 e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 285 DSGEELAEAVLEFIRA 300 (302)
T ss_pred hChHHHHHHHHHHHhc
Confidence 9999999999999864
No 14
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.98 E-value=2.1e-31 Score=203.38 Aligned_cols=227 Identities=19% Similarity=0.274 Sum_probs=137.6
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHH-HHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLN-DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
++|+|+++|+||||.|+.+. ...++++++++++. .+++.++.++++++||||||.+++.+|.++|++|+++|+
T Consensus 231 ~~yrVia~Dl~G~G~S~~p~------~~~ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVL 304 (481)
T PLN03087 231 STYRLFAVDLLGFGRSPKPA------DSLYTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTL 304 (481)
T ss_pred CCCEEEEECCCCCCCCcCCC------CCcCCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEE
Confidence 68999999999999998764 24689999999994 899999999999999999999999999999999999999
Q ss_pred eccCccccccCCCCCCCcchhHHHhhhh-----hhhhhHH---HHHHHhcC--------hHHHHHHHHhccCCCCcccHH
Q 024971 84 LNISLRMLHIKKQPWYGRPLIRSFQNLL-----RNTAAGK---LFYKMVAT--------SESVRNILCQCYNDTSQVTEE 147 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 147 (260)
++++....... ............ ....... ..+..... .......+...... ......
T Consensus 305 i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 378 (481)
T PLN03087 305 LAPPYYPVPKG-----VQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTR-NRMRTF 378 (481)
T ss_pred ECCCccccccc-----hhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhh-hhhhHH
Confidence 99864321100 000000000000 0000000 00000000 00000000000000 000001
Q ss_pred HHHHHhccCCccchHHHHHHHHhhhC---CCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCC
Q 024971 148 LVEKILQPGLETGAADVFLEFICYSG---GPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGH 224 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH 224 (260)
..+.+..... ............... .........++++|+|+|+|++|.++|++..+.+++.+|++++++++++||
T Consensus 379 l~~~~~~~~~-~~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH 457 (481)
T PLN03087 379 LIEGFFCHTH-NAAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDH 457 (481)
T ss_pred HHHHHHhccc-hhhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 1111100000 000001000000000 000012233689999999999999999999999999999999999999999
Q ss_pred Ccch-hchhHHHHHHHHhhhh
Q 024971 225 CPQV-SLYLSLSSACLHTLSY 244 (260)
Q Consensus 225 ~~~~-~~p~~~~~~i~~~l~~ 244 (260)
++++ ++|+++++.|.+|.++
T Consensus 458 ~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 458 ITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred cchhhcCHHHHHHHHHHHhhc
Confidence 9885 9999999999999865
No 15
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.97 E-value=1.8e-30 Score=190.16 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=136.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+. ...++++++++++.+++++++.++++++||||||.+++.++..+|++|+++
T Consensus 56 ~l~~~~~vi~~D~~G~G~S~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~l 129 (286)
T PRK03204 56 ALRDRFRCVAPDYLGFGLSERPS------GFGYQIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGV 129 (286)
T ss_pred HHhCCcEEEEECCCCCCCCCCCC------ccccCHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEE
Confidence 46778999999999999998765 235789999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++..... ... ....+.............. .........+.... ...........+.........
T Consensus 130 vl~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 196 (286)
T PRK03204 130 VLGNTWFWPA-----DTL---AMKAFSRVMSSPPVQYAIL---RRNFFVERLIPAGT--EHRPSSAVMAHYRAVQPNAAA 196 (286)
T ss_pred EEECccccCC-----Cch---hHHHHHHHhccccchhhhh---hhhHHHHHhccccc--cCCCCHHHHHHhcCCCCCHHH
Confidence 9988753110 000 0000000000000000000 00000011111100 111222222222222111111
Q ss_pred HHHHHHHHhhhC--C---CCCCccCC--CCCCCEEEEecCCCCCCChH-HHHHhhccCCCccEEEeCCCCCCcchhchhH
Q 024971 162 ADVFLEFICYSG--G---PLPEELLP--QVKCPVLIAWGDKDPWEPIE-LGRAYGNFDSVEDFIVLPNVGHCPQVSLYLS 233 (260)
Q Consensus 162 ~~~~~~~~~~~~--~---~~~~~~~~--~i~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~ 233 (260)
............ . ......+. .+++|+++|+|++|.++++. ..+.+.+.+|+.++++++++||++++|+|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~ 276 (286)
T PRK03204 197 RRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDR 276 (286)
T ss_pred HHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHH
Confidence 111110000000 0 00001111 12799999999999987654 5678888999999999999999999999999
Q ss_pred HHHHHHHhh
Q 024971 234 LSSACLHTL 242 (260)
Q Consensus 234 ~~~~i~~~l 242 (260)
+++.|.+|+
T Consensus 277 ~~~~i~~~~ 285 (286)
T PRK03204 277 IAAAIIERF 285 (286)
T ss_pred HHHHHHHhc
Confidence 999999987
No 16
>PRK07581 hypothetical protein; Validated
Probab=99.97 E-value=2.8e-30 Score=194.03 Aligned_cols=233 Identities=12% Similarity=0.064 Sum_probs=136.8
Q ss_pred CCC-CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHH-----HHHHHHHH----HHHhhcCCc-eEEEEeChhhHHHHHH
Q 024971 2 VLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE-----TWASQLND----FCKDVVKDQ-AFFICNSIGGLVGLQA 70 (260)
Q Consensus 2 ~L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~-~~lvGhS~Gg~~a~~~ 70 (260)
.|. ++|+||++|+||||.|+.+... ...++++ .+++|+.. +++++++++ ++||||||||++|+.+
T Consensus 66 ~l~~~~~~vi~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~ 141 (339)
T PRK07581 66 ALDPEKYFIIIPNMFGNGLSSSPSNT----PAPFNAARFPHVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHW 141 (339)
T ss_pred ccCcCceEEEEecCCCCCCCCCCCCC----CCCCCCCCCCceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHH
Confidence 454 6899999999999999865421 0123333 24555554 778899999 4799999999999999
Q ss_pred HhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhh--------------hhhhHHHHHHHhcChHHHHHHHHh
Q 024971 71 AVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLR--------------NTAAGKLFYKMVATSESVRNILCQ 136 (260)
Q Consensus 71 a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 136 (260)
|.++|++|+++|++++....... ...........+. ...... .............++..
T Consensus 142 a~~~P~~V~~Lvli~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (339)
T PRK07581 142 AVRYPDMVERAAPIAGTAKTTPH------NFVFLEGLKAALTADPAFNGGWYAEPPERGLRA-HARVYAGWGFSQAFYRQ 214 (339)
T ss_pred HHHCHHHHhhheeeecCCCCCHH------HHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHH-HHHHHHHHHhHHHHHHh
Confidence 99999999999999876431100 0000000000000 000000 00000000000011110
Q ss_pred c-cCCCC-cccHHHHHHHhccC---CccchHHHHH-HHHhh--hCC----CCCCccCCCCCCCEEEEecCCCCCCChHHH
Q 024971 137 C-YNDTS-QVTEELVEKILQPG---LETGAADVFL-EFICY--SGG----PLPEELLPQVKCPVLIAWGDKDPWEPIELG 204 (260)
Q Consensus 137 ~-~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--~~~----~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~ 204 (260)
. +.... ....+....+.... .......... .+... ... .+....++++++|+|+|+|++|.++|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~ 294 (339)
T PRK07581 215 ELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDC 294 (339)
T ss_pred hhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHH
Confidence 0 00000 00011111111111 1111111111 11110 001 123456788999999999999999999999
Q ss_pred HHhhccCCCccEEEeCC-CCCCcchhchhHHHHHHHHhhhhc
Q 024971 205 RAYGNFDSVEDFIVLPN-VGHCPQVSLYLSLSSACLHTLSYL 245 (260)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~gH~~~~~~p~~~~~~i~~~l~~~ 245 (260)
+.+.+.+++++++++++ +||++++++|+++++.|.+|++++
T Consensus 295 ~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 295 EAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred HHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 99999899999999998 999999999999999999999765
No 17
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=5.2e-30 Score=192.48 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=138.8
Q ss_pred CC-CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCce-EEEEeChhhHHHHHHHhhCccchh
Q 024971 2 VL-AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQA-FFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 2 ~L-~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
.| +++|+||++|+||||.|.. ..++++++++|+.+++++++.++. +++||||||.+|+.+|.++|++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~---------~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~ 164 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLD---------VPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVR 164 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCC---------CCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhh
Confidence 35 5789999999999998842 246789999999999999999775 799999999999999999999999
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhh---h-h---h----hhHHHH-HHHhcChHHHHHHHHhccCC-CCccc-
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLL---R-N---T----AAGKLF-YKMVATSESVRNILCQCYND-TSQVT- 145 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~---~----~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~- 145 (260)
++|++++..... +. ........... . . . ...... .........+...+...... .....
T Consensus 165 ~LvLi~s~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
T PRK08775 165 TLVVVSGAHRAH-----PY--AAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRV 237 (343)
T ss_pred eEEEECccccCC-----HH--HHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccc
Confidence 999999864221 00 00000000000 0 0 0 000000 00011111111111110000 00000
Q ss_pred --HHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC-CCccEEEeCC-
Q 024971 146 --EELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPN- 221 (260)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~- 221 (260)
...................+......... ....+.++++|+|+++|++|.++|++..+.+.+.. ++++++++++
T Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~ 315 (343)
T PRK08775 238 AAEDYLDAAGAQYVARTPVNAYLRLSESIDL--HRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSP 315 (343)
T ss_pred hHHHHHHHHHHHHHHhcChhHHHHHHHHHhh--cCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCC
Confidence 11111000000000011111111111100 12346789999999999999999998888888766 7899999985
Q ss_pred CCCCcchhchhHHHHHHHHhhhhccc
Q 024971 222 VGHCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 222 ~gH~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
+||++++|+|++|++.|.+||+....
T Consensus 316 aGH~~~lE~Pe~~~~~l~~FL~~~~~ 341 (343)
T PRK08775 316 YGHDAFLKETDRIDAILTTALRSTGE 341 (343)
T ss_pred ccHHHHhcCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999976543
No 18
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=1.9e-30 Score=187.64 Aligned_cols=217 Identities=19% Similarity=0.229 Sum_probs=141.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+. ..++++++++++.++++.++.++++++||||||.+++.+|.++|++|+++
T Consensus 35 ~l~~~~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~l 107 (251)
T TIGR02427 35 ALTPDFRVLRYDKRGHGLSDAPE-------GPYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRAL 107 (251)
T ss_pred HhhcccEEEEecCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHH
Confidence 46789999999999999997644 46799999999999999999899999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++....... ............ ....... .......+...+... .......+...... ..
T Consensus 108 i~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~ 169 (251)
T TIGR02427 108 VLSNTAAKIGTP-------ESWNARIAAVRA-EGLAALA------DAVLERWFTPGFREA---HPARLDLYRNMLVR-QP 169 (251)
T ss_pred hhccCccccCch-------hhHHHHHhhhhh-ccHHHHH------HHHHHHHcccccccC---ChHHHHHHHHHHHh-cC
Confidence 999876432110 000000000000 0000000 000000110001000 00111111100000 00
Q ss_pred HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHh
Q 024971 162 ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHT 241 (260)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~ 241 (260)
...+...............++++++|+++++|++|.++|.+..+.+.+..++.++++++++||+++.++|+++.+.|.+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~f 249 (251)
T TIGR02427 170 PDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDF 249 (251)
T ss_pred HHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHH
Confidence 11111111111122223456788999999999999999999888888888999999999999999999999999999998
Q ss_pred hh
Q 024971 242 LS 243 (260)
Q Consensus 242 l~ 243 (260)
++
T Consensus 250 l~ 251 (251)
T TIGR02427 250 LR 251 (251)
T ss_pred hC
Confidence 74
No 19
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.97 E-value=6e-30 Score=185.79 Aligned_cols=219 Identities=20% Similarity=0.210 Sum_probs=141.1
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|..+. ...++++++++++.+++++++.++++++||||||.+++.++.++|++|+++
T Consensus 35 ~l~~~~~vi~~D~~G~G~S~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~ 108 (257)
T TIGR03611 35 VLTQRFHVVTYDHRGTGRSPGEL------PPGYSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSL 108 (257)
T ss_pred HHHhccEEEEEcCCCCCCCCCCC------cccCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHh
Confidence 35779999999999999998754 256899999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHH---HHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCc
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFY---KMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLE 158 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
|++++...... ............+.......... ........ +... ............ ...
T Consensus 109 i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~-~~~-- 172 (257)
T TIGR03611 109 VLINAWSRPDP------HTRRCFDVRIALLQHAGPEAYVHAQALFLYPADW----ISEN---AARLAADEAHAL-AHF-- 172 (257)
T ss_pred eeecCCCCCCh------hHHHHHHHHHHHHhccCcchhhhhhhhhhccccH----hhcc---chhhhhhhhhcc-ccc--
Confidence 99987542210 00000000000000000000000 00000000 0000 000000000000 000
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHH
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSAC 238 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i 238 (260)
.. ..............+....+.++++|+++++|++|.++|.+..+.+.+..++++++.++++||+++.++|+++.+.|
T Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i 251 (257)
T TIGR03611 173 PG-KANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRAL 251 (257)
T ss_pred Cc-cHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHH
Confidence 00 11111111111122224567788999999999999999999999998889999999999999999999999999999
Q ss_pred HHhhh
Q 024971 239 LHTLS 243 (260)
Q Consensus 239 ~~~l~ 243 (260)
.+|++
T Consensus 252 ~~fl~ 256 (257)
T TIGR03611 252 LDFLK 256 (257)
T ss_pred HHHhc
Confidence 99985
No 20
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.97 E-value=1.5e-29 Score=182.40 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=135.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+... .++++++++++.+.+. ++++++||||||.+++.+|.++|++++++
T Consensus 26 ~l~~~~~vi~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~~----~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 93 (245)
T TIGR01738 26 ELSAHFTLHLVDLPGHGRSRGFG--------PLSLADAAEAIAAQAP----DPAIWLGWSLGGLVALHIAATHPDRVRAL 93 (245)
T ss_pred hhccCeEEEEecCCcCccCCCCC--------CcCHHHHHHHHHHhCC----CCeEEEEEcHHHHHHHHHHHHCHHhhhee
Confidence 57789999999999999987543 4678888888766542 68999999999999999999999999999
Q ss_pred eEeccCccccccCCCC-CCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHH-hccCCCC-cccHHHHHHHhccCCc
Q 024971 82 ILLNISLRMLHIKKQP-WYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILC-QCYNDTS-QVTEELVEKILQPGLE 158 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 158 (260)
|++++.+......... .........+....... . ......+.. ....... ................
T Consensus 94 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
T TIGR01738 94 VTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDD-Y----------QRTIERFLALQTLGTPTARQDARALKQTLLARPT 162 (245)
T ss_pred eEecCCcccccCCcccccCCHHHHHHHHHHhhhh-H----------HHHHHHHHHHHHhcCCccchHHHHHHHHhhccCC
Confidence 9998875432111111 00000000010000000 0 000011100 0001000 0000011111111111
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHH
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSAC 238 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i 238 (260)
.. ...+..........+....+.++++|+++++|++|.++|.+..+.+.+..+++++++++++||++++|+|+++++.|
T Consensus 163 ~~-~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i 241 (245)
T TIGR01738 163 PN-VQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALL 241 (245)
T ss_pred CC-HHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHH
Confidence 11 11111111112222224457789999999999999999999999898889999999999999999999999999999
Q ss_pred HHhh
Q 024971 239 LHTL 242 (260)
Q Consensus 239 ~~~l 242 (260)
.+|+
T Consensus 242 ~~fi 245 (245)
T TIGR01738 242 VAFK 245 (245)
T ss_pred HhhC
Confidence 9985
No 21
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=179.68 Aligned_cols=239 Identities=18% Similarity=0.252 Sum_probs=142.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|++.++|+++|++|+|+|++|.=.. ........+++.+.+.....++++.+|+|||+||.+|..||.+||++|+.|
T Consensus 112 ~La~~~~vyaiDllG~G~SSRP~F~~---d~~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kL 188 (365)
T KOG4409|consen 112 DLAKIRNVYAIDLLGFGRSSRPKFSI---DPTTAEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKL 188 (365)
T ss_pred hhhhcCceEEecccCCCCCCCCCCCC---CcccchHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceE
Confidence 57889999999999999999876211 123345588899999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhh--h--hhhhhHHHHHHHhcChHHHHHHHHhccCC-CCcccHHHHHHH-hcc
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNL--L--RNTAAGKLFYKMVATSESVRNILCQCYND-TSQVTEELVEKI-LQP 155 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 155 (260)
||++|..........+....+........ . ...++..........+..........+.. .....++.+..| +..
T Consensus 189 iLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~ 268 (365)
T KOG4409|consen 189 ILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHC 268 (365)
T ss_pred EEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHh
Confidence 99999876654322222222211111000 0 00000000000001111111111111111 112233332222 222
Q ss_pred CCc-cchHHHHHHHHhhhCCC--CCCccCCCC--CCCEEEEecCCCCCCChHHHHHhhc--cCCCccEEEeCCCCCCcch
Q 024971 156 GLE-TGAADVFLEFICYSGGP--LPEELLPQV--KCPVLIAWGDKDPWEPIELGRAYGN--FDSVEDFIVLPNVGHCPQV 228 (260)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~i--~~P~l~i~g~~D~~~~~~~~~~~~~--~~~~~~~~~~~~~gH~~~~ 228 (260)
... +.....+..+....... .....+..+ +||+++|+|++|.+ +......+.+ ....++.++++++||.++.
T Consensus 269 n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D~~~g~~~~~~~~~~~~~~~~v~~aGHhvyl 347 (365)
T KOG4409|consen 269 NAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-DKNAGLEVTKSLMKEYVEIIIVPGAGHHVYL 347 (365)
T ss_pred cCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-cchhHHHHHHHhhcccceEEEecCCCceeec
Confidence 222 22222333332211110 012233333 49999999999975 4444444444 2345899999999999999
Q ss_pred hchhHHHHHHHHhhhh
Q 024971 229 SLYLSLSSACLHTLSY 244 (260)
Q Consensus 229 ~~p~~~~~~i~~~l~~ 244 (260)
++|+.|++.+.++++.
T Consensus 348 Dnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 348 DNPEFFNQIVLEECDK 363 (365)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988764
No 22
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=191.03 Aligned_cols=233 Identities=27% Similarity=0.385 Sum_probs=141.1
Q ss_pred CCCc--cEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 3 LAKS--HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 3 L~~~--~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
|++. ++|+++|++|+|.++..+. ...|+..++++.+..++...+..+++++|||+||.+|+.+|+.+|+.|++
T Consensus 81 L~~~~~~~v~aiDl~G~g~~s~~~~-----~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~ 155 (326)
T KOG1454|consen 81 LSKAKGLRVLAIDLPGHGYSSPLPR-----GPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDS 155 (326)
T ss_pred cccccceEEEEEecCCCCcCCCCCC-----CCceehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccccc
Confidence 4444 9999999999995544332 35699999999999999999999999999999999999999999999999
Q ss_pred ce---EeccCccccccCCCCCCCcchhHHHhhhhhhhhhHH---HHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhc
Q 024971 81 MI---LLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGK---LFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQ 154 (260)
Q Consensus 81 lv---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (260)
++ ++++........ .......+........... ...........................+........
T Consensus 156 lv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (326)
T KOG1454|consen 156 LVLLDLLGPPVYSTPKG-----IKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSR 230 (326)
T ss_pred eeeecccccccccCCcc-----hhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheec
Confidence 99 444443221100 0000000000000000000 000000000000000111111111111121111111
Q ss_pred cCCccchHHHHHHHHhhhCC--CCCCccCCCCC-CCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhch
Q 024971 155 PGLETGAADVFLEFICYSGG--PLPEELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLY 231 (260)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p 231 (260)
.............+...... ......++++. ||+++++|++|.++|.+.+..+.+.+|++++++++++||.+++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h~e~P 310 (326)
T KOG1454|consen 231 PVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPHLERP 310 (326)
T ss_pred ccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccccCCH
Confidence 11011111111111111111 22233456666 9999999999999999999999998899999999999999999999
Q ss_pred hHHHHHHHHhhhhc
Q 024971 232 LSLSSACLHTLSYL 245 (260)
Q Consensus 232 ~~~~~~i~~~l~~~ 245 (260)
+++++.|..|+...
T Consensus 311 e~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 311 EEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
No 23
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.97 E-value=2.3e-29 Score=181.00 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=128.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccc-hhh
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI-CRG 80 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~-v~~ 80 (260)
.| ++|+|+++|+||||.|+.+. ..+++++++++.+++++++.++++++||||||.+|+.+|.++|+. |++
T Consensus 24 ~l-~~~~vi~~D~~G~G~S~~~~--------~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~ 94 (242)
T PRK11126 24 AL-PDYPRLYIDLPGHGGSAAIS--------VDGFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCG 94 (242)
T ss_pred Hc-CCCCEEEecCCCCCCCCCcc--------ccCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccE
Confidence 35 47999999999999998654 248999999999999999999999999999999999999999664 999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETG 160 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
++++++.+.... . ................+ ........+...+...... .........+........
T Consensus 95 lvl~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 161 (242)
T PRK11126 95 LIVEGGNPGLQN--------A--EERQARWQNDRQWAQRF-RQEPLEQVLADWYQQPVFA--SLNAEQRQQLVAKRSNNN 161 (242)
T ss_pred EEEeCCCCCCCC--------H--HHHHHHHhhhHHHHHHh-ccCcHHHHHHHHHhcchhh--ccCccHHHHHHHhcccCC
Confidence 999887542110 0 00000000000000000 0000000111111000000 011111111111111000
Q ss_pred hHHHHHHHHh---hhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHH
Q 024971 161 AADVFLEFIC---YSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSA 237 (260)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~ 237 (260)
......+.. .....+..+.+.++++|+++++|++|..+. . +.+. .++++++++++||+++.|+|+++++.
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~----~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~ 234 (242)
T PRK11126 162 -GAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-A----LAQQ-LALPLHVIPNAGHNAHRENPAAFAAS 234 (242)
T ss_pred -HHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-H----HHHH-hcCeEEEeCCCCCchhhhChHHHHHH
Confidence 011111111 111222345678899999999999998542 2 2222 36899999999999999999999999
Q ss_pred HHHhhhh
Q 024971 238 CLHTLSY 244 (260)
Q Consensus 238 i~~~l~~ 244 (260)
|.+|++.
T Consensus 235 i~~fl~~ 241 (242)
T PRK11126 235 LAQILRL 241 (242)
T ss_pred HHHHHhh
Confidence 9999865
No 24
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.97 E-value=9.9e-29 Score=185.36 Aligned_cols=225 Identities=22% Similarity=0.311 Sum_probs=141.6
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+.... ...++++++++++.+++++++.++++|+|||+||.+++.+|.++|++|+++
T Consensus 149 ~L~~~~~Via~DlpG~G~S~~p~~~~---~~~ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~l 225 (383)
T PLN03084 149 VLSKNYHAIAFDWLGFGFSDKPQPGY---GFNYTLDEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKL 225 (383)
T ss_pred HHhcCCEEEEECCCCCCCCCCCcccc---cccCCHHHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEE
Confidence 46789999999999999998765210 135899999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|+++++...... .....+... ........+... ........+.. .......++....+.........
T Consensus 226 ILi~~~~~~~~~--------~~p~~l~~~-~~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~ 292 (383)
T PLN03084 226 ILLNPPLTKEHA--------KLPSTLSEF-SNFLLGEIFSQD--PLRASDKALTS--CGPYAMKEDDAMVYRRPYLTSGS 292 (383)
T ss_pred EEECCCCccccc--------cchHHHHHH-HHHHhhhhhhcc--hHHHHhhhhcc--cCccCCCHHHHHHHhccccCCcc
Confidence 999987422100 000001000 000000000000 00000001100 01111223333333332222221
Q ss_pred HHH-HHHHHhhhCCCC------CCcc--CCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchh
Q 024971 162 ADV-FLEFICYSGGPL------PEEL--LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYL 232 (260)
Q Consensus 162 ~~~-~~~~~~~~~~~~------~~~~--~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~ 232 (260)
... ............ .... ..++++|+++++|++|.+++.+..+.+.+. ++.++++++++||++++|+|+
T Consensus 293 ~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe 371 (383)
T PLN03084 293 SGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQEDCGE 371 (383)
T ss_pred hHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcchhCHH
Confidence 111 111111110000 0001 135799999999999999999988888776 478999999999999999999
Q ss_pred HHHHHHHHhhh
Q 024971 233 SLSSACLHTLS 243 (260)
Q Consensus 233 ~~~~~i~~~l~ 243 (260)
++++.|.+|++
T Consensus 372 ~v~~~I~~Fl~ 382 (383)
T PLN03084 372 ELGGIISGILS 382 (383)
T ss_pred HHHHHHHHHhh
Confidence 99999999985
No 25
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=2.8e-30 Score=194.48 Aligned_cols=219 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCC------ceEEEEeChhhHHHHHHHhhCccch
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD------QAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
+||+|+++|+||||.|+.+. ....+++++++|+.++++.+..+ +++|+||||||.+++.++.++|+++
T Consensus 114 ~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v 187 (349)
T PLN02385 114 SGYGVFAMDYPGFGLSEGLH------GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAW 187 (349)
T ss_pred CCCEEEEecCCCCCCCCCCC------CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchh
Confidence 58999999999999998654 13458999999999999887543 7999999999999999999999999
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhc-cCC
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQ-PGL 157 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (260)
+++|+++|......... .......+........... ........ ....+.. ........+.. ...
T Consensus 188 ~glVLi~p~~~~~~~~~----~~~~~~~~~~~~~~~~p~~----~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~ 253 (349)
T PLN02385 188 DGAILVAPMCKIADDVV----PPPLVLQILILLANLLPKA----KLVPQKDL---AELAFRD---LKKRKMAEYNVIAYK 253 (349)
T ss_pred hheeEeccccccccccc----CchHHHHHHHHHHHHCCCc----eecCCCcc---ccccccC---HHHHHHhhcCcceeC
Confidence 99999998653211000 0000000000000000000 00000000 0000000 00000000000 000
Q ss_pred ccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC--CCccEEEeCCCCCCcchhchhH--
Q 024971 158 ETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQVSLYLS-- 233 (260)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~-- 233 (260)
...........+... ......+.++++|+|+++|++|.++|++..+.+.+.. +++++++++++||+++.++|++
T Consensus 254 ~~~~~~~~~~~l~~~--~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~ 331 (349)
T PLN02385 254 DKPRLRTAVELLRTT--QEIEMQLEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMI 331 (349)
T ss_pred CCcchHHHHHHHHHH--HHHHHhcccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhH
Confidence 000111111111110 0113457789999999999999999999988887765 5689999999999999999987
Q ss_pred --HHHHHHHhhhhc
Q 024971 234 --LSSACLHTLSYL 245 (260)
Q Consensus 234 --~~~~i~~~l~~~ 245 (260)
+.+.|.+|++..
T Consensus 332 ~~v~~~i~~wL~~~ 345 (349)
T PLN02385 332 FQVLDDIISWLDSH 345 (349)
T ss_pred HHHHHHHHHHHHHh
Confidence 777777887643
No 26
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.97 E-value=3.2e-30 Score=183.74 Aligned_cols=208 Identities=22% Similarity=0.343 Sum_probs=135.2
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|++||+|+++|+||||.|+.+.. ...++++++++++.+++++++.++++++|||+||.+++.++.++|++|+++
T Consensus 20 ~l~~~~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 94 (228)
T PF12697_consen 20 ALARGYRVIAFDLPGHGRSDPPPD-----YSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKGL 94 (228)
T ss_dssp HHHTTSEEEEEECTTSTTSSSHSS-----GSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred HHhCCCEEEEEecCCccccccccc-----cCCcchhhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 356899999999999999988652 146899999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|+++|......... .......+........... . ......+.... .......+... .
T Consensus 95 vl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~------~~~~~~~~~~~-----~ 151 (228)
T PF12697_consen 95 VLLSPPPPLPDSPS----RSFGPSFIRRLLAWRSRSL---R-----RLASRFFYRWF------DGDEPEDLIRS-----S 151 (228)
T ss_dssp EEESESSSHHHHHC----HHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHH------THHHHHHHHHH-----H
T ss_pred eeeccccccccccc----ccccchhhhhhhhcccccc---c-----ccccccccccc------ccccccccccc-----c
Confidence 99999864321000 0000000111110000000 0 00000000000 00111111000 0
Q ss_pred HHHHHHHHhh-hCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHH
Q 024971 162 ADVFLEFICY-SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSA 237 (260)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~ 237 (260)
...+...... .........++++++|+++++|++|.+++.+..+.+.+..+++++++++++||++++++|++++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 152 RRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred ccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 0111111000 000011345667799999999999999999999999988899999999999999999999999874
No 27
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.97 E-value=9e-29 Score=186.36 Aligned_cols=233 Identities=16% Similarity=0.144 Sum_probs=138.8
Q ss_pred CCccEEEEEcCCC--CCCCCCCCC---CCCC--CCCCccHHHHHHHHHHHHHhhcCCc-eEEEEeChhhHHHHHHHhhCc
Q 024971 4 AKSHRVYSIDLIG--YGYSDKPNP---RDFF--DKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 4 ~~~~~v~~~D~~G--~G~S~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+++|+|+++|+|| ||.|..... .... ....++++++++++.+++++++.++ ++++||||||.+++.+|.++|
T Consensus 70 ~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p 149 (351)
T TIGR01392 70 TDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYP 149 (351)
T ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHCh
Confidence 6789999999999 555543211 0000 0125899999999999999999998 999999999999999999999
Q ss_pred cchhhceEeccCccccccCCCCCCCcchhHHHhhhhh-h-------------h----hhHHHHHH-HhcChHHHHHHHHh
Q 024971 76 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLR-N-------------T----AAGKLFYK-MVATSESVRNILCQ 136 (260)
Q Consensus 76 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~----~~~~~~~~-~~~~~~~~~~~~~~ 136 (260)
++|+++|++++....... . ............ . . ........ .....+.+...+..
T Consensus 150 ~~v~~lvl~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~ 223 (351)
T TIGR01392 150 ERVRAIVVLATSARHSAW-----C-IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGR 223 (351)
T ss_pred HhhheEEEEccCCcCCHH-----H-HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCc
Confidence 999999999987532110 0 000000000000 0 0 00000000 01111111111111
Q ss_pred ccCCC-Cc--------ccHHHHH----HHhccCCccchHHHHHHHHhhhCC----CCCCccCCCCCCCEEEEecCCCCCC
Q 024971 137 CYNDT-SQ--------VTEELVE----KILQPGLETGAADVFLEFICYSGG----PLPEELLPQVKCPVLIAWGDKDPWE 199 (260)
Q Consensus 137 ~~~~~-~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~P~l~i~g~~D~~~ 199 (260)
..... .. ....... .+... .................. .+..+.+++|++|+|+|+|++|.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~ 302 (351)
T TIGR01392 224 APQSGESPASGFDTRFQVESYLRYQGDKFVDR-FDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLF 302 (351)
T ss_pred CcccccccccccCccchHHHHHHHHHHHHHhh-cCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCcccc
Confidence 10000 00 0011110 01110 011111111111111100 1224678899999999999999999
Q ss_pred ChHHHHHhhccCCCccEE-----EeCCCCCCcchhchhHHHHHHHHhhh
Q 024971 200 PIELGRAYGNFDSVEDFI-----VLPNVGHCPQVSLYLSLSSACLHTLS 243 (260)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-----~~~~~gH~~~~~~p~~~~~~i~~~l~ 243 (260)
|++..+.+.+.+++++++ +++++||++++++|+++++.|.+||+
T Consensus 303 p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 303 PPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 999999999999888765 56789999999999999999999974
No 28
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.96 E-value=1.8e-28 Score=186.00 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=142.1
Q ss_pred CCccEEEEEcCCCC-CCCCCCCCCCCC-------CCCCccHHHHHHHHHHHHHhhcCCc-eEEEEeChhhHHHHHHHhhC
Q 024971 4 AKSHRVYSIDLIGY-GYSDKPNPRDFF-------DKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+++|+|+++|++|+ |.|+.+...... ....++++++++++.+++++++.++ ++++||||||.+++.+|.++
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~ 168 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDY 168 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhC
Confidence 67999999999993 555433211000 0025899999999999999999999 58999999999999999999
Q ss_pred ccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhh--------------hh-----hHHHHH-HHhcChHHHHHHH
Q 024971 75 PEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRN--------------TA-----AGKLFY-KMVATSESVRNIL 134 (260)
Q Consensus 75 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~-~~~~~~~~~~~~~ 134 (260)
|++|+++|++++........ ............. .. ..+... ........+...+
T Consensus 169 p~~v~~lvl~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f 242 (379)
T PRK00175 169 PDRVRSALVIASSARLSAQN------IAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKF 242 (379)
T ss_pred hHhhhEEEEECCCcccCHHH------HHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhc
Confidence 99999999999865321100 0000000000000 00 000000 0011111111111
Q ss_pred HhccCCCCc--------ccHHHHH----HHhccCCccchHHHHHHHHhhhCC-----CCCCccCCCCCCCEEEEecCCCC
Q 024971 135 CQCYNDTSQ--------VTEELVE----KILQPGLETGAADVFLEFICYSGG-----PLPEELLPQVKCPVLIAWGDKDP 197 (260)
Q Consensus 135 ~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~P~l~i~g~~D~ 197 (260)
......... ....... .+... .................. .+..+.+++|++|+|+|+|++|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~ 321 (379)
T PRK00175 243 GRELQSGELPFGFDVEFQVESYLRYQGDKFVER-FDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDW 321 (379)
T ss_pred CccccccccccCCCccchHHHHHHHHHHHHhhc-cCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCcc
Confidence 111100000 0011110 01111 111111111111111110 12245678999999999999999
Q ss_pred CCChHHHHHhhccCCCc----cEEEeC-CCCCCcchhchhHHHHHHHHhhhhcccc
Q 024971 198 WEPIELGRAYGNFDSVE----DFIVLP-NVGHCPQVSLYLSLSSACLHTLSYLHTC 248 (260)
Q Consensus 198 ~~~~~~~~~~~~~~~~~----~~~~~~-~~gH~~~~~~p~~~~~~i~~~l~~~~~~ 248 (260)
++|++..+.+++.++++ ++++++ ++||++++|+|+++++.|.+||+....+
T Consensus 322 ~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~~~ 377 (379)
T PRK00175 322 LFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAARE 377 (379)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhhhc
Confidence 99999999998888876 677775 8999999999999999999999887654
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.96 E-value=4.8e-28 Score=174.99 Aligned_cols=225 Identities=20% Similarity=0.233 Sum_probs=137.6
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHH-HHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ-LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
.|+++|+|+++|+||||.|+.+.. ....++++++++ +..+++.++.++++++|||+||.+++.+|.++|++|++
T Consensus 23 ~L~~~~~v~~~d~~g~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~ 97 (251)
T TIGR03695 23 LLGPHFRCLAIDLPGHGSSQSPDE-----IERYDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQG 97 (251)
T ss_pred HhcccCeEEEEcCCCCCCCCCCCc-----cChhhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchheee
Confidence 466899999999999999977542 246789999999 77888888888999999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHh-ccCCCCcccHHHHHHHhccCCcc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQ-CYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
++++++.+.......... ...........+. .............. .+.............+.......
T Consensus 98 lil~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (251)
T TIGR03695 98 LILESGSPGLATEEERAA----------RRQNDEQLAQRFE-QEGLEAFLDDWYQQPLFASQKNLPPEQRQALRAKRLAN 166 (251)
T ss_pred eEEecCCCCcCchHhhhh----------hhhcchhhhhHHH-hcCccHHHHHHhcCceeeecccCChHHhHHHHHhcccc
Confidence 999998643211000000 0000000000000 00000000100000 00110011111111111111111
Q ss_pred ch--HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHH
Q 024971 160 GA--ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSA 237 (260)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~ 237 (260)
.. ...................+.++++|+++++|++|..++ +..+.+.+..+++++++++++||++++++|+++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~ 245 (251)
T TIGR03695 167 NPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKI 245 (251)
T ss_pred cchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHH
Confidence 11 111111111111112234467889999999999998764 556677888899999999999999999999999999
Q ss_pred HHHhhh
Q 024971 238 CLHTLS 243 (260)
Q Consensus 238 i~~~l~ 243 (260)
|.+|++
T Consensus 246 i~~~l~ 251 (251)
T TIGR03695 246 LLAFLE 251 (251)
T ss_pred HHHHhC
Confidence 999974
No 30
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=1e-27 Score=182.50 Aligned_cols=247 Identities=17% Similarity=0.173 Sum_probs=135.4
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+++|+|+++|+||||.|+.+... .. ......+.+++++.++++.++.++++++||||||.+++.+|.++|++|+++
T Consensus 127 ~L~~~~~vi~~D~rG~G~S~~~~~~-~~-~~~~~~~~~~~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~l 204 (402)
T PLN02894 127 ALASRFRVIAIDQLGWGGSSRPDFT-CK-STEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHL 204 (402)
T ss_pred HHHhCCEEEEECCCCCCCCCCCCcc-cc-cHHHHHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCchhhcEE
Confidence 3667899999999999999765410 00 001112245677888888888899999999999999999999999999999
Q ss_pred eEeccCccccccCCCC-CCCc--c-hhHHHhh-hhhhhhhHHHHHHHhc--ChHHHHHHHHhccCC---CCcc----cHH
Q 024971 82 ILLNISLRMLHIKKQP-WYGR--P-LIRSFQN-LLRNTAAGKLFYKMVA--TSESVRNILCQCYND---TSQV----TEE 147 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~-~~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~----~~~ 147 (260)
|+++|........... +... . ....+.. ................ .+..........+.. .... ...
T Consensus 205 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (402)
T PLN02894 205 ILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKL 284 (402)
T ss_pred EEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhH
Confidence 9999865332111100 0000 0 0000000 0000000000000000 000111111110100 0001 111
Q ss_pred HHHHHhccCCccchHHHHHHHHhh---hCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc-CCCccEEEeCCCC
Q 024971 148 LVEKILQPGLETGAADVFLEFICY---SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVG 223 (260)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~-~~~~~~~~~~~~g 223 (260)
....+................... ....+....+.++++|+++|+|++|.+.+ .....+.+. .+.+++++++++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aG 363 (402)
T PLN02894 285 LTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGG 363 (402)
T ss_pred HHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCC
Confidence 111111111111111111111110 01122234578899999999999998766 444444433 3458899999999
Q ss_pred CCcchhchhHHHHHHHHhhhhccccccc
Q 024971 224 HCPQVSLYLSLSSACLHTLSYLHTCRCY 251 (260)
Q Consensus 224 H~~~~~~p~~~~~~i~~~l~~~~~~~~~ 251 (260)
|+++.|+|++|++.+.+|++.+....+.
T Consensus 364 H~~~~E~P~~f~~~l~~~~~~~~~~~~~ 391 (402)
T PLN02894 364 HFVFLDNPSGFHSAVLYACRKYLSPDRE 391 (402)
T ss_pred CeeeccCHHHHHHHHHHHHHHhccCCch
Confidence 9999999999999999999776555543
No 31
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.96 E-value=1.8e-29 Score=180.35 Aligned_cols=218 Identities=18% Similarity=0.266 Sum_probs=133.6
Q ss_pred cEEEEEcCCCCCCCCC---CCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 7 HRVYSIDLIGYGYSDK---PNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 7 ~~v~~~D~~G~G~S~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
|+|+++|+||+|.|++ .. ...++.+++++++..++++++.++++++||||||.+++.+|.++|++|+++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPD------FPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSG------SCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCccCC------cccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 7999999999999995 33 36789999999999999999999999999999999999999999999999999
Q ss_pred eccCccccccCCCCCCCcchhH--HHhhhhhhhhhHHHHHHHhcChHHHHHH------HHhccCCCCcccHHHHHHHhcc
Q 024971 84 LNISLRMLHIKKQPWYGRPLIR--SFQNLLRNTAAGKLFYKMVATSESVRNI------LCQCYNDTSQVTEELVEKILQP 155 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 155 (260)
++++...... ....... .+............ ... ........ ...... ...........+...
T Consensus 75 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (230)
T PF00561_consen 75 ISPPPDLPDG-----LWNRIWPRGNLQGQLLDNFFNFL-SDP--IKPLLGRWPKQFFAYDREFV-EDFLKQFQSQQYARF 145 (230)
T ss_dssp ESESSHHHHH-----HHHHCHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHT
T ss_pred Eeeeccchhh-----hhHHHHhhhhhhhhHHHhhhccc-ccc--chhhhhhhhhheeeccCccc-cchhhccchhhhhHH
Confidence 9996200000 0000000 00000000000000 000 00000000 000000 000000001111110
Q ss_pred CCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHH
Q 024971 156 GLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLS 235 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~ 235 (260)
.........................+.++++|+++++|++|.++|++....+.+..|+.++++++++||+.++++|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~ 225 (230)
T PF00561_consen 146 AETDAFDNMFWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFN 225 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHH
T ss_pred HHHHHHhhhccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhh
Confidence 00000000000000011111113456679999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 024971 236 SACL 239 (260)
Q Consensus 236 ~~i~ 239 (260)
+.|.
T Consensus 226 ~~i~ 229 (230)
T PF00561_consen 226 EIII 229 (230)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9885
No 32
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=2e-28 Score=183.52 Aligned_cols=216 Identities=15% Similarity=0.173 Sum_probs=130.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC------CceEEEEeChhhHHHHHHHhhCccch
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
+||+|+++|+||||.|+... ....+++.+++|+.++++.+.. .+++|+||||||.+++.++.++|++|
T Consensus 86 ~Gy~V~~~D~rGhG~S~~~~------~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v 159 (330)
T PLN02298 86 MGFACFALDLEGHGRSEGLR------AYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGF 159 (330)
T ss_pred CCCEEEEecCCCCCCCCCcc------ccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccc
Confidence 58999999999999997543 2346889999999999998753 36999999999999999999999999
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhc--cC
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQ--PG 156 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 156 (260)
+++|+++|...........+ .......... .......... ........ .... ....+.. ..
T Consensus 160 ~~lvl~~~~~~~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~ 222 (330)
T PLN02298 160 DGAVLVAPMCKISDKIRPPW----PIPQILTFVA----------RFLPTLAIVP-TADLLEKS-VKVP-AKKIIAKRNPM 222 (330)
T ss_pred eeEEEecccccCCcccCCch----HHHHHHHHHH----------HHCCCCcccc-CCCccccc-ccCH-HHHHHHHhCcc
Confidence 99999998753221000000 0000000000 0000000000 00000000 0000 0000000 00
Q ss_pred -Cc-cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC--CCccEEEeCCCCCCcchhchh
Q 024971 157 -LE-TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQVSLYL 232 (260)
Q Consensus 157 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~ 232 (260)
.. ............... .....+.++++|+|+++|++|.++|++..+.+.+.+ +++++++++++||.++.++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd 300 (330)
T PLN02298 223 RYNGKPRLGTVVELLRVTD--YLGKKLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPD 300 (330)
T ss_pred ccCCCccHHHHHHHHHHHH--HHHHhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCH
Confidence 00 000111111111100 013457788999999999999999999998887664 478999999999999988876
Q ss_pred H----HHHHHHHhhhhc
Q 024971 233 S----LSSACLHTLSYL 245 (260)
Q Consensus 233 ~----~~~~i~~~l~~~ 245 (260)
. +.+.|.+|+...
T Consensus 301 ~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 301 ENIEIVRRDILSWLNER 317 (330)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4 666777787654
No 33
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.96 E-value=2.7e-27 Score=174.65 Aligned_cols=221 Identities=14% Similarity=0.198 Sum_probs=134.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEec
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~ 85 (260)
||+|+++|+||||.|..+... ...++++++++++.+++++++.++++++||||||.+++.+|.++|++++++|+++
T Consensus 53 g~~vi~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~ 128 (288)
T TIGR01250 53 GREVIMYDQLGCGYSDQPDDS----DELWTIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISS 128 (288)
T ss_pred CCEEEEEcCCCCCCCCCCCcc----cccccHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEec
Confidence 899999999999999865421 0147899999999999999999999999999999999999999999999999998
Q ss_pred cCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHh----cChHHHHHHHHhcc---CCCCcccHHHHHHHhccCCc
Q 024971 86 ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMV----ATSESVRNILCQCY---NDTSQVTEELVEKILQPGLE 158 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 158 (260)
+....... ... .......+... ....+.... .........+.... ..................
T Consensus 129 ~~~~~~~~------~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 198 (288)
T TIGR01250 129 MLDSAPEY------VKE-LNRLRKELPPE-VRAAIKRCEASGDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGM-- 198 (288)
T ss_pred ccccchHH------HHH-HHHHHhhcChh-HHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhcc--
Confidence 75422100 000 00000000000 000000000 00000000000000 000000011111110000
Q ss_pred cchHHHHHHHH--------hhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhc
Q 024971 159 TGAADVFLEFI--------CYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSL 230 (260)
Q Consensus 159 ~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 230 (260)
....+..+. ......+..+.++++++|+++++|++|.+ +++..+.+.+..+++++++++++||+++.++
T Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~ 275 (288)
T TIGR01250 199 --NTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTMIED 275 (288)
T ss_pred --CHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcccCC
Confidence 000000000 00001112345678899999999999985 5677788888889999999999999999999
Q ss_pred hhHHHHHHHHhhh
Q 024971 231 YLSLSSACLHTLS 243 (260)
Q Consensus 231 p~~~~~~i~~~l~ 243 (260)
|+++.+.|.+|++
T Consensus 276 p~~~~~~i~~fl~ 288 (288)
T TIGR01250 276 PEVYFKLLSDFIR 288 (288)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999974
No 34
>PHA02857 monoglyceride lipase; Provisional
Probab=99.96 E-value=2.3e-28 Score=179.01 Aligned_cols=212 Identities=15% Similarity=0.182 Sum_probs=127.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
.||+|+++|+||||.|+... ....++.++++|+.+.++.+ ...+++++||||||.+|+.+|.++|+++++
T Consensus 51 ~g~~via~D~~G~G~S~~~~------~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~ 124 (276)
T PHA02857 51 LGILVFSHDHIGHGRSNGEK------MMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTA 124 (276)
T ss_pred CCCEEEEccCCCCCCCCCcc------CCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccce
Confidence 48999999999999997643 13346777778887777654 345899999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc-
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET- 159 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (260)
+|+++|..... .......+..... ................. .....+............
T Consensus 125 lil~~p~~~~~--------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 184 (276)
T PHA02857 125 MILMSPLVNAE--------AVPRLNLLAAKLM---------GIFYPNKIVGKLCPESV---SRDMDEVYKYQYDPLVNHE 184 (276)
T ss_pred EEEeccccccc--------cccHHHHHHHHHH---------HHhCCCCccCCCCHhhc---cCCHHHHHHHhcCCCccCC
Confidence 99999864310 0000010000000 00000000000000000 000001111111110000
Q ss_pred -chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC-CCccEEEeCCCCCCcchhch---hHH
Q 024971 160 -GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQVSLY---LSL 234 (260)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~p---~~~ 234 (260)
............. ......+.++++|+|+++|++|.++|++..+.+.+.. +++++++++++||.++.|++ +++
T Consensus 185 ~~~~~~~~~~~~~~--~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~ 262 (276)
T PHA02857 185 KIKAGFASQVLKAT--NKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSV 262 (276)
T ss_pred CccHHHHHHHHHHH--HHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHH
Confidence 0111111111110 0113457789999999999999999999999887764 56899999999999998866 467
Q ss_pred HHHHHHhhhh
Q 024971 235 SSACLHTLSY 244 (260)
Q Consensus 235 ~~~i~~~l~~ 244 (260)
.+.+.+||+.
T Consensus 263 ~~~~~~~l~~ 272 (276)
T PHA02857 263 MKEIETWIFN 272 (276)
T ss_pred HHHHHHHHHH
Confidence 7777778765
No 35
>PRK10749 lysophospholipase L2; Provisional
Probab=99.96 E-value=1.1e-28 Score=184.28 Aligned_cols=231 Identities=11% Similarity=0.034 Sum_probs=131.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
++||+|+++|+||||.|+.+..... .....+++++++|+..+++++ +..+++++||||||.+++.++.++|++++
T Consensus 79 ~~g~~v~~~D~~G~G~S~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~ 157 (330)
T PRK10749 79 HLGYDVLIIDHRGQGRSGRLLDDPH-RGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFD 157 (330)
T ss_pred HCCCeEEEEcCCCCCCCCCCCCCCC-cCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcc
Confidence 5799999999999999986432100 012358999999999999887 56789999999999999999999999999
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhh-hHHHHHHHhcChHHHH-HHHHhccCCCCcccHHHHHHHhccCC
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTA-AGKLFYKMVATSESVR-NILCQCYNDTSQVTEELVEKILQPGL 157 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (260)
++|+++|....... ........+........ .... .. ........ ..................+.+.....
T Consensus 158 ~lvl~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 230 (330)
T PRK10749 158 AIALCAPMFGIVLP-----LPSWMARRILNWAEGHPRIRDG-YA-IGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPE 230 (330)
T ss_pred eEEEECchhccCCC-----CCcHHHHHHHHHHHHhcCCCCc-CC-CCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999986432100 00000000000000000 0000 00 00000000 00000000000000111122221110
Q ss_pred c---cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC-------CCccEEEeCCCCCCcc
Q 024971 158 E---TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-------SVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 158 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~gH~~~ 227 (260)
. .............. ......+.++++|+|+|+|++|.+++++..+.+.+.+ +++++++++|+||.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~ 308 (330)
T PRK10749 231 LRVGGPTYHWVRESILAG--EQVLAGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEIL 308 (330)
T ss_pred cccCCCcHHHHHHHHHHH--HHHHhhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhh
Confidence 0 00111111111100 0012346778999999999999999998888776643 4568999999999999
Q ss_pred hhch---hHHHHHHHHhhhh
Q 024971 228 VSLY---LSLSSACLHTLSY 244 (260)
Q Consensus 228 ~~~p---~~~~~~i~~~l~~ 244 (260)
.|.+ +.+.+.|.+|++.
T Consensus 309 ~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 309 FEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred hCCcHHHHHHHHHHHHHHhh
Confidence 8875 5677778888764
No 36
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.95 E-value=6.8e-27 Score=178.41 Aligned_cols=213 Identities=23% Similarity=0.293 Sum_probs=135.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|.++|+|+++|+||||.|.... ...+++++++++.++++.++.++++++|||+||.+++.+|.++|+++.++
T Consensus 153 ~l~~~~~v~~~d~~g~G~s~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~l 225 (371)
T PRK14875 153 ALAAGRPVIALDLPGHGASSKAV-------GAGSLDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASL 225 (371)
T ss_pred HHhcCCEEEEEcCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhCchheeEE
Confidence 36678999999999999996544 35789999999999999999899999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
|++++........ ..+...+..... ...+...+...+.............+.........
T Consensus 226 v~~~~~~~~~~~~------~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
T PRK14875 226 TLIAPAGLGPEIN------GDYIDGFVAAES--------------RRELKPVLELLFADPALVTRQMVEDLLKYKRLDGV 285 (371)
T ss_pred EEECcCCcCcccc------hhHHHHhhcccc--------------hhHHHHHHHHHhcChhhCCHHHHHHHHHHhccccH
Confidence 9998764221100 000000000000 00011111111111111111111111111110000
Q ss_pred HHHHHHHHhhh-----CCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHH
Q 024971 162 ADVFLEFICYS-----GGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSS 236 (260)
Q Consensus 162 ~~~~~~~~~~~-----~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~ 236 (260)
...+....... ........+.++++|+++++|++|.++|.+..+.+. ++.++.+++++||++++++|+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~---~~~~~~~~~~~gH~~~~e~p~~~~~ 362 (371)
T PRK14875 286 DDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP---DGVAVHVLPGAGHMPQMEAAADVNR 362 (371)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc---CCCeEEEeCCCCCChhhhCHHHHHH
Confidence 11111111100 001112346678999999999999999987765543 4578999999999999999999999
Q ss_pred HHHHhhhh
Q 024971 237 ACLHTLSY 244 (260)
Q Consensus 237 ~i~~~l~~ 244 (260)
.|.+|++.
T Consensus 363 ~i~~fl~~ 370 (371)
T PRK14875 363 LLAEFLGK 370 (371)
T ss_pred HHHHHhcc
Confidence 99999864
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.95 E-value=1.9e-26 Score=167.45 Aligned_cols=218 Identities=17% Similarity=0.117 Sum_probs=130.4
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc-CCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
+||+|+++|+||||.|.... ...++++++++++.+++++++ .++++++||||||.++..++.++|++|+++|+
T Consensus 44 ~g~~vi~~dl~g~G~s~~~~------~~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~ 117 (273)
T PLN02211 44 SGYKVTCIDLKSAGIDQSDA------DSVTTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICLAVY 117 (273)
T ss_pred CCCEEEEecccCCCCCCCCc------ccCCCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeEEEE
Confidence 58999999999999886543 234799999999999999985 57999999999999999999999999999999
Q ss_pred eccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccC-CCCcccHHHHHHHhccCCccchH
Q 024971 84 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYN-DTSQVTEELVEKILQPGLETGAA 162 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (260)
+++......... ......... .... ........ .. ...... .......+....+..........
T Consensus 118 ~~~~~~~~g~~~--------~~~~~~~~~--~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (273)
T PLN02211 118 VAATMLKLGFQT--------DEDMKDGVP--DLSE-FGDVYELG--FG--LGPDQPPTSAIIKKEFRRKILYQMSPQEDS 182 (273)
T ss_pred eccccCCCCCCH--------HHHHhcccc--chhh-hccceeee--ec--cCCCCCCceeeeCHHHHHHHHhcCCCHHHH
Confidence 987532110000 000000000 0000 00000000 00 000000 00000011111110000000000
Q ss_pred HHHHHHH-----hhhCCCCCCccCCCC-CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHH
Q 024971 163 DVFLEFI-----CYSGGPLPEELLPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSS 236 (260)
Q Consensus 163 ~~~~~~~-----~~~~~~~~~~~~~~i-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~ 236 (260)
....... .........+...++ ++|+++|.|++|..+|++.++.+.+..+..+++.++ +||.+++++|+++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~ 261 (273)
T PLN02211 183 TLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFG 261 (273)
T ss_pred HHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCccccCHHHHHH
Confidence 0000000 000001111223344 799999999999999999999999998888999997 899999999999999
Q ss_pred HHHHhhhh
Q 024971 237 ACLHTLSY 244 (260)
Q Consensus 237 ~i~~~l~~ 244 (260)
.|.++...
T Consensus 262 ~i~~~a~~ 269 (273)
T PLN02211 262 LLIKAAAS 269 (273)
T ss_pred HHHHHHHH
Confidence 99887654
No 38
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.95 E-value=4.1e-26 Score=166.17 Aligned_cols=222 Identities=19% Similarity=0.184 Sum_probs=136.2
Q ss_pred CCccEEEEEcCCCCCCCCC-CCCCCCCCCCCccHHHHHHHHHHHHHhhc----CCceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYSDK-PNPRDFFDKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+||.|+++|+||||.|.. .. ....++.++.+|+..+++... ..+++++||||||.+++.++.+++..|
T Consensus 59 ~~G~~V~~~D~RGhG~S~r~~r------g~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i 132 (298)
T COG2267 59 ARGFDVYALDLRGHGRSPRGQR------GHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRI 132 (298)
T ss_pred hCCCEEEEecCCCCCCCCCCCc------CCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccc
Confidence 5799999999999999984 32 345569999999999999885 358999999999999999999999999
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCC-
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGL- 157 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (260)
+++|+.+|...... ................+......... . . ..........-+++..+.+.....
T Consensus 133 ~~~vLssP~~~l~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~-~-~--~~~~~~~~~sr~~~~~~~~~~dP~~ 199 (298)
T COG2267 133 DGLVLSSPALGLGG---------AILRLILARLALKLLGRIRPKLPVDS-N-L--LEGVLTDDLSRDPAEVAAYEADPLI 199 (298)
T ss_pred cEEEEECccccCCh---------hHHHHHHHHHhcccccccccccccCc-c-c--ccCcCcchhhcCHHHHHHHhcCCcc
Confidence 99999999864421 00000000000000000000000000 0 0 000011111223344444443332
Q ss_pred cc--chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCC-hHHHHHhhcc--CCCccEEEeCCCCCCcchhc-h
Q 024971 158 ET--GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP-IELGRAYGNF--DSVEDFIVLPNVGHCPQVSL-Y 231 (260)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~-~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~-p 231 (260)
.. .....+........ .........+++|+|+++|++|.+++ .+...++.+. .+++++++++|+.|.++.|. .
T Consensus 200 ~~~~~~~~w~~~~~~a~~-~~~~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~ 278 (298)
T COG2267 200 GVGGPVSRWVDLALLAGR-VPALRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDR 278 (298)
T ss_pred ccCCccHHHHHHHHHhhc-ccchhccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcch
Confidence 11 11222222222222 11234466789999999999999999 5666654443 67789999999999988874 4
Q ss_pred --hHHHHHHHHhhhhc
Q 024971 232 --LSLSSACLHTLSYL 245 (260)
Q Consensus 232 --~~~~~~i~~~l~~~ 245 (260)
+++.+.+.+|+...
T Consensus 279 ~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 279 AREEVLKDILAWLAEA 294 (298)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 56777777777543
No 39
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.95 E-value=7.2e-27 Score=162.53 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=137.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc------CCceEEEEeChhhHHHHHHHhhCccc
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAVMEPEI 77 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lvGhS~Gg~~a~~~a~~~p~~ 77 (260)
..||.|+++|++|||.|++.. ....+++..++|+.++.+... ..+.+|+||||||++++.++.+.|+.
T Consensus 80 ~~g~~v~a~D~~GhG~SdGl~------~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~ 153 (313)
T KOG1455|consen 80 KSGFAVYAIDYEGHGRSDGLH------AYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNF 153 (313)
T ss_pred hCCCeEEEeeccCCCcCCCCc------ccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcc
Confidence 469999999999999999866 356789999999999988752 23799999999999999999999999
Q ss_pred hhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhc-cC
Q 024971 78 CRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQ-PG 156 (260)
Q Consensus 78 v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (260)
.+|+|+++|...........+........+..++...... ...... ....-+++....... +.
T Consensus 154 w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~liP~wk~v-------p~~d~~---------~~~~kdp~~r~~~~~npl 217 (313)
T KOG1455|consen 154 WDGAILVAPMCKISEDTKPHPPVISILTLLSKLIPTWKIV-------PTKDII---------DVAFKDPEKRKILRSDPL 217 (313)
T ss_pred cccceeeecccccCCccCCCcHHHHHHHHHHHhCCceeec-------CCcccc---------ccccCCHHHHHHhhcCCc
Confidence 9999999998765433333222222222222222211100 000000 000001111111111 11
Q ss_pred Ccc--chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc--CCCccEEEeCCCCCCcch-h--
Q 024971 157 LET--GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQV-S-- 229 (260)
Q Consensus 157 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~-~-- 229 (260)
... .......++.+.. .+....+.++++|.+++||++|.++.++.++.+.+. ..+.++.+|||.=|.++. |
T Consensus 218 ~y~g~pRl~T~~ElLr~~--~~le~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~ 295 (313)
T KOG1455|consen 218 CYTGKPRLKTAYELLRVT--ADLEKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPD 295 (313)
T ss_pred eecCCccHHHHHHHHHHH--HHHHHhcccccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCc
Confidence 111 1122222222211 112457889999999999999999999999998876 457899999999998775 3
Q ss_pred -chhHHHHHHHHhhh
Q 024971 230 -LYLSLSSACLHTLS 243 (260)
Q Consensus 230 -~p~~~~~~i~~~l~ 243 (260)
+-+.|...|.+||+
T Consensus 296 en~e~Vf~DI~~Wl~ 310 (313)
T KOG1455|consen 296 ENVEIVFGDIISWLD 310 (313)
T ss_pred hhHHHHHHHHHHHHH
Confidence 34445555555554
No 40
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.95 E-value=5.4e-26 Score=197.28 Aligned_cols=232 Identities=18% Similarity=0.220 Sum_probs=140.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCC-CCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRD-FFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
.|+++|+|+++|+||||.|+...... ......++++++++++.+++++++.++++++||||||.+++.++.++|++|++
T Consensus 1393 ~L~~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~ 1472 (1655)
T PLN02980 1393 AISGSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEG 1472 (1655)
T ss_pred HHhCCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCE
Confidence 36678999999999999997643100 00013578999999999999999999999999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCC----CCcccHHHHHHHhccC
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYND----TSQVTEELVEKILQPG 156 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 156 (260)
+|++++.+.... ........... ......+. ......+....+.. ................
T Consensus 1473 lVlis~~p~~~~---------~~~~~~~~~~~-~~~~~~l~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1537 (1655)
T PLN02980 1473 AVIISGSPGLKD---------EVARKIRSAKD-DSRARMLI-----DHGLEIFLENWYSGELWKSLRNHPHFNKIVASRL 1537 (1655)
T ss_pred EEEECCCCccCc---------hHHHHHHhhhh-hHHHHHHH-----hhhHHHHHHHhccHHHhhhhccCHHHHHHHHHHH
Confidence 999987542210 00000000000 00000000 00000000000000 0000011111110000
Q ss_pred CccchHHHHHHHH---hhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCC------------ccEEEeCC
Q 024971 157 LETGAADVFLEFI---CYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV------------EDFIVLPN 221 (260)
Q Consensus 157 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~------------~~~~~~~~ 221 (260)
.. .......... ......+..+.++++++|+|+|+|++|..++ +..+.+.+.+++ ++++++++
T Consensus 1538 ~~-~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~ 1615 (1655)
T PLN02980 1538 LH-KDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPN 1615 (1655)
T ss_pred hc-CCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECC
Confidence 00 0111111111 1111222245688999999999999999775 455555555443 47999999
Q ss_pred CCCCcchhchhHHHHHHHHhhhhcccccc
Q 024971 222 VGHCPQVSLYLSLSSACLHTLSYLHTCRC 250 (260)
Q Consensus 222 ~gH~~~~~~p~~~~~~i~~~l~~~~~~~~ 250 (260)
+||++++|+|+++++.|.+|++..+.++.
T Consensus 1616 aGH~~~lE~Pe~f~~~I~~FL~~~~~~~~ 1644 (1655)
T PLN02980 1616 CGHAVHLENPLPVIRALRKFLTRLHNSST 1644 (1655)
T ss_pred CCCchHHHCHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999998876654
No 41
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=168.62 Aligned_cols=235 Identities=14% Similarity=0.088 Sum_probs=141.9
Q ss_pred CccEEEEEcCCCCCCCCCC-------CCCCC------C-CCCCccHHHHHHHHHHHHHhhcCCceE-EEEeChhhHHHHH
Q 024971 5 KSHRVYSIDLIGYGYSDKP-------NPRDF------F-DKPFYTFETWASQLNDFCKDVVKDQAF-FICNSIGGLVGLQ 69 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~-------~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvGhS~Gg~~a~~ 69 (260)
..|.||++|..|-|.|+.| ...+. . .-..++++++++++..+++++++++++ ++||||||++++.
T Consensus 98 ~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~ 177 (389)
T PRK06765 98 NKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQE 177 (389)
T ss_pred CceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHH
Confidence 5799999999998764322 11000 0 112479999999999999999999986 9999999999999
Q ss_pred HHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhh-hh---------------h--h-hHHHHHHHhcChHHH
Q 024971 70 AAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLL-RN---------------T--A-AGKLFYKMVATSESV 130 (260)
Q Consensus 70 ~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~--~-~~~~~~~~~~~~~~~ 130 (260)
+|.++|++|+++|++++..... ++............+ .. . . ............+.+
T Consensus 178 ~a~~~P~~v~~lv~ia~~~~~~-----~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~ 252 (389)
T PRK06765 178 WAVHYPHMVERMIGVIGNPQND-----AWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFY 252 (389)
T ss_pred HHHHChHhhheEEEEecCCCCC-----hhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998764321 010001111111100 00 0 0 011111112222222
Q ss_pred HHHHHhcc--CCC------Cccc-HHHHHHHhccCCccchHHHHHHHHhhhCCC-------CCCccCCCCCCCEEEEecC
Q 024971 131 RNILCQCY--NDT------SQVT-EELVEKILQPGLETGAADVFLEFICYSGGP-------LPEELLPQVKCPVLIAWGD 194 (260)
Q Consensus 131 ~~~~~~~~--~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~P~l~i~g~ 194 (260)
...+.... ... .... +..................+..+....... +..+.+.++++|+|+|+|+
T Consensus 253 ~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~ 332 (389)
T PRK06765 253 ETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCK 332 (389)
T ss_pred HHHcCcCccccccccccccchhhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeC
Confidence 22211110 000 0000 111111111111222222222222211111 2345678899999999999
Q ss_pred CCCCCChHHHHHhhccCC----CccEEEeCC-CCCCcchhchhHHHHHHHHhhhh
Q 024971 195 KDPWEPIELGRAYGNFDS----VEDFIVLPN-VGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 195 ~D~~~~~~~~~~~~~~~~----~~~~~~~~~-~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
+|.++|++..+.+.+.++ +++++++++ +||+.++++|+++++.|.+|++.
T Consensus 333 ~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 333 QDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 999999999888887765 688999985 89999999999999999999864
No 42
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.94 E-value=6.3e-25 Score=162.70 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=71.4
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
.++|+|+++|+||||.|+.+.. ...++.+++++|+..++++++.++++++||||||.+++.++.++|++|+++|+
T Consensus 51 ~~~~~vi~~D~~G~G~S~~~~~-----~~~~~~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl 125 (306)
T TIGR01249 51 PETYRIVLFDQRGCGKSTPHAC-----LEENTTWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVL 125 (306)
T ss_pred ccCCEEEEECCCCCCCCCCCCC-----cccCCHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhhee
Confidence 3689999999999999986532 13467889999999999999999999999999999999999999999999999
Q ss_pred eccCcc
Q 024971 84 LNISLR 89 (260)
Q Consensus 84 ~~~~~~ 89 (260)
+++...
T Consensus 126 ~~~~~~ 131 (306)
T TIGR01249 126 RGIFLL 131 (306)
T ss_pred eccccC
Confidence 988643
No 43
>PLN02511 hydrolase
Probab=99.94 E-value=1.1e-26 Score=176.18 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=130.7
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC----CceEEEEeChhhHHHHHHHhhCccc-
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAVMEPEI- 77 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lvGhS~Gg~~a~~~a~~~p~~- 77 (260)
+++||+|+++|+||||.|....+ ......+++|+.+++++++. .+++++||||||.+++.++.++|++
T Consensus 126 ~~~g~~vv~~d~rG~G~s~~~~~-------~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~ 198 (388)
T PLN02511 126 RSKGWRVVVFNSRGCADSPVTTP-------QFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENC 198 (388)
T ss_pred HHCCCEEEEEecCCCCCCCCCCc-------CEEcCCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCC
Confidence 46899999999999999976442 22235667788888887754 5899999999999999999999987
Q ss_pred -hhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcCh-HHHHHHHHhc---cC----CCCcccHHH
Q 024971 78 -CRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATS-ESVRNILCQC---YN----DTSQVTEEL 148 (260)
Q Consensus 78 -v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~ 148 (260)
|.++++++++...... ...+..... ......+...+... ......+... +. .......++
T Consensus 199 ~v~~~v~is~p~~l~~~----------~~~~~~~~~-~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 267 (388)
T PLN02511 199 PLSGAVSLCNPFDLVIA----------DEDFHKGFN-NVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDF 267 (388)
T ss_pred CceEEEEECCCcCHHHH----------HHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHH
Confidence 8888888775422100 000000000 00000000000000 0000000000 00 000011111
Q ss_pred HHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHH-HHhhccCCCccEEEeCCCCCCcc
Q 024971 149 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~gH~~~ 227 (260)
.+.+............+. . ..+....+++|++|+|+|+|++|+++|.+.. ....+..+++++++++++||+.+
T Consensus 268 d~~~t~~~~gf~~~~~yy---~---~~s~~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~ 341 (388)
T PLN02511 268 DDGLTRVSFGFKSVDAYY---S---NSSSSDSIKHVRVPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGW 341 (388)
T ss_pred HHhhhhhcCCCCCHHHHH---H---HcCchhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceecc
Confidence 111111111111111111 1 1222457889999999999999999987754 44566789999999999999999
Q ss_pred hhchhH------HHHHHHHhhhhcc
Q 024971 228 VSLYLS------LSSACLHTLSYLH 246 (260)
Q Consensus 228 ~~~p~~------~~~~i~~~l~~~~ 246 (260)
+|+|+. +.+.+.+|++.+.
T Consensus 342 ~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 342 VAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHH
Confidence 999876 4888999997654
No 44
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.94 E-value=4.4e-26 Score=172.20 Aligned_cols=215 Identities=19% Similarity=0.204 Sum_probs=130.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC----CceEEEEeChhhHHHHHHHhhCc---c
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAVMEP---E 76 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lvGhS~Gg~~a~~~a~~~p---~ 76 (260)
++||+|+++|+||||.|+... ....+++.+++|+.++++.+.. .+++++||||||.+++.++. +| +
T Consensus 161 ~~Gy~V~~~D~rGhG~S~~~~------~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~ 233 (395)
T PLN02652 161 SCGFGVYAMDWIGHGGSDGLH------GYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIED 233 (395)
T ss_pred HCCCEEEEeCCCCCCCCCCCC------CCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCccc
Confidence 369999999999999998754 2345788999999999988753 37999999999999998764 55 4
Q ss_pred chhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccC
Q 024971 77 ICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPG 156 (260)
Q Consensus 77 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (260)
+++++|+.+|...... ..+....+... .........+... .................+..+.
T Consensus 234 ~v~glVL~sP~l~~~~-------~~~~~~~~~~l----------~~~~~p~~~~~~~-~~~~~~~s~~~~~~~~~~~dp~ 295 (395)
T PLN02652 234 KLEGIVLTSPALRVKP-------AHPIVGAVAPI----------FSLVAPRFQFKGA-NKRGIPVSRDPAALLAKYSDPL 295 (395)
T ss_pred ccceEEEECccccccc-------chHHHHHHHHH----------HHHhCCCCcccCc-ccccCCcCCCHHHHHHHhcCCC
Confidence 7999999988642210 00000000000 0000000000000 0000000000111111121111
Q ss_pred Cccch--HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC--CccEEEeCCCCCCcchh-ch
Q 024971 157 LETGA--ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQVS-LY 231 (260)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~~-~p 231 (260)
..... ........... ......+.++++|+|+++|++|.++|++.++.+.+..+ +.+++++++++|.++.| ++
T Consensus 296 ~~~g~i~~~~~~~~~~~~--~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~ 373 (395)
T PLN02652 296 VYTGPIRVRTGHEILRIS--SYLTRNFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPER 373 (395)
T ss_pred cccCCchHHHHHHHHHHH--HHHHhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCH
Confidence 11111 11111111110 01134577899999999999999999999988876643 47899999999998776 79
Q ss_pred hHHHHHHHHhhhhc
Q 024971 232 LSLSSACLHTLSYL 245 (260)
Q Consensus 232 ~~~~~~i~~~l~~~ 245 (260)
+++.+.+.+|++..
T Consensus 374 e~v~~~I~~FL~~~ 387 (395)
T PLN02652 374 EEVGRDIIDWMEKR 387 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999743
No 45
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.94 E-value=4.7e-26 Score=148.54 Aligned_cols=204 Identities=23% Similarity=0.261 Sum_probs=141.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
++|+++|-||+|.|.++.. ++ ...-+..-+++...+++.+..+++.++|+|-||..|+..|+++++.|.++|+.+.
T Consensus 72 ~TivawDPpGYG~SrPP~R-kf---~~~ff~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga 147 (277)
T KOG2984|consen 72 VTIVAWDPPGYGTSRPPER-KF---EVQFFMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGA 147 (277)
T ss_pred eEEEEECCCCCCCCCCCcc-cc---hHHHHHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecc
Confidence 8999999999999987762 11 1223455567778899999999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHH
Q 024971 87 SLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (260)
......... ...+.++....-....+.-+......+.+.... + ...+...
T Consensus 148 ~ayvn~~~~------ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~w---------------a---------~wvD~v~ 197 (277)
T KOG2984|consen 148 AAYVNHLGA------MAFKGIRDVNKWSARGRQPYEDHYGPETFRTQW---------------A---------AWVDVVD 197 (277)
T ss_pred cceecchhH------HHHhchHHHhhhhhhhcchHHHhcCHHHHHHHH---------------H---------HHHHHHH
Confidence 753321100 001111111111111111111111222221111 1 1123333
Q ss_pred HHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhh
Q 024971 167 EFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 167 ~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
++.........+..+.+++||+|+++|+.|++++....-.+....+.+++.+.+.++|.+++.-+++++..+.+|++.
T Consensus 198 qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 198 QFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred HHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 333333334445678999999999999999999988888888888999999999999999999999999999999975
No 46
>PRK05855 short chain dehydrogenase; Validated
Probab=99.93 E-value=7.7e-25 Score=176.63 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=130.7
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCc-eEEEEeChhhHHHHHHHhh--Cccch
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVM--EPEIC 78 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvGhS~Gg~~a~~~a~~--~p~~v 78 (260)
.|+++|+|+++|+||||.|+.+.. ...++++++++|+..++++++.++ ++++||||||.+++.++.+ .++++
T Consensus 47 ~L~~~~~Vi~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v 121 (582)
T PRK05855 47 LLADRFRVVAYDVRGAGRSSAPKR-----TAAYTLARLADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTRPRAAGRI 121 (582)
T ss_pred HhhcceEEEEecCCCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhCccchhhh
Confidence 467899999999999999987542 246899999999999999998765 9999999999999888766 24455
Q ss_pred hhceEeccCccccccCC-CCC----CCcchhHHHhhhhhhhhh--------HHHHHHHhcChHHHHHHHHhccCCCCccc
Q 024971 79 RGMILLNISLRMLHIKK-QPW----YGRPLIRSFQNLLRNTAA--------GKLFYKMVATSESVRNILCQCYNDTSQVT 145 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (260)
..++.++++........ ... .................. ........ ............ . .....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~ 198 (582)
T PRK05855 122 ASFTSVSGPSLDHVGFWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLG-LGRAWPRLLRRV-E-GTPVD 198 (582)
T ss_pred hhheeccCCchHHHHHHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccc-hhhHHHHhhhhc-c-CCCcc
Confidence 55555543321000000 000 000000000000000000 00000000 000000000000 0 00000
Q ss_pred HHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCC
Q 024971 146 EELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC 225 (260)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 225 (260)
........ .. .......+... .........+..+++|+++|+|++|.+++.+..+.+.+..++.++++++ +||+
T Consensus 199 ~~~~~~~~-~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~ 272 (582)
T PRK05855 199 PIPTQTTL-SD-GAHGVKLYRAN---MIRSLSRPRERYTDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHW 272 (582)
T ss_pred hhhhhhhh-cc-ccchHHHHHhh---hhhhhccCccCCccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCc
Confidence 00000000 00 00001111110 0001112235568999999999999999999988888888888888887 6999
Q ss_pred cchhchhHHHHHHHHhhhhccc
Q 024971 226 PQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 226 ~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
++.|+|+++.+.|.+|++....
T Consensus 273 ~~~e~p~~~~~~i~~fl~~~~~ 294 (582)
T PRK05855 273 LPMSHPQVLAAAVAEFVDAVEG 294 (582)
T ss_pred chhhChhHHHHHHHHHHHhccC
Confidence 9999999999999999987654
No 47
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.93 E-value=6.7e-24 Score=150.18 Aligned_cols=218 Identities=17% Similarity=0.112 Sum_probs=140.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc----CCceEEEEeChhh-HHHHHHHhhCccchhh
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIGG-LVGLQAAVMEPEICRG 80 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lvGhS~Gg-~~a~~~a~~~p~~v~~ 80 (260)
+..|+++|.|.||.|.... ..+.+++++|+..+++..+ ..+++++|||||| .+++..+...|+.+..
T Consensus 80 ~~~v~~vd~RnHG~Sp~~~--------~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~r 151 (315)
T KOG2382|consen 80 GRDVYAVDVRNHGSSPKIT--------VHNYEAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIER 151 (315)
T ss_pred cCceEEEecccCCCCcccc--------ccCHHHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCcccce
Confidence 4589999999999998754 5679999999999999985 5689999999999 7788888889999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhh------HHHHH---HHhcChHHHHHHHHhccCCCCcccHHHHHH
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAA------GKLFY---KMVATSESVRNILCQCYNDTSQVTEELVEK 151 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (260)
+|+++-.+... +.........+..+...... ..... ........+..++...+.. ....
T Consensus 152 liv~D~sP~~~-----~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~-~~~~------ 219 (315)
T KOG2382|consen 152 LIVEDISPGGV-----GRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVGFDNLVRQFILTNLKK-SPSD------ 219 (315)
T ss_pred eEEEecCCccC-----CcccchHHHHHHHHHhccccccccccHHHHHHHHHHHhcchHHHHHHHHhcCc-CCCC------
Confidence 99998776311 11111111111111111000 00000 0111222222222222221 0000
Q ss_pred HhccCCccchHHHHHHHHhhhCCCCCCccC--CCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchh
Q 024971 152 ILQPGLETGAADVFLEFICYSGGPLPEELL--PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVS 229 (260)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 229 (260)
.............+++...........+ ...+.||+++.|.++..++.+...++.+..|++++++++++|||++.|
T Consensus 220 --~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E 297 (315)
T KOG2382|consen 220 --GSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLE 297 (315)
T ss_pred --CceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecC
Confidence 0001111223333333221111112222 667899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhhc
Q 024971 230 LYLSLSSACLHTLSYL 245 (260)
Q Consensus 230 ~p~~~~~~i~~~l~~~ 245 (260)
+|+++.+.|.+|++..
T Consensus 298 ~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 298 KPEEFIESISEFLEEP 313 (315)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999999999988653
No 48
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.92 E-value=4.2e-24 Score=159.18 Aligned_cols=219 Identities=14% Similarity=0.142 Sum_probs=127.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc------------------------CCceEEEE
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV------------------------KDQAFFIC 59 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~lvG 59 (260)
.+||+|+++|+||||.|....... ....+++++++|+..+++.+. ..|++++|
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~---g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~G 148 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLR---GHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIG 148 (332)
T ss_pred HCCCcEEEecccccCCCccccccc---cchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEee
Confidence 579999999999999998643100 123589999999999887642 24799999
Q ss_pred eChhhHHHHHHHhhCcc--------chhhceEeccCccccccCCCC-CCCcchhHHHhhhhhhhhhHHHHHHHhcChHHH
Q 024971 60 NSIGGLVGLQAAVMEPE--------ICRGMILLNISLRMLHIKKQP-WYGRPLIRSFQNLLRNTAAGKLFYKMVATSESV 130 (260)
Q Consensus 60 hS~Gg~~a~~~a~~~p~--------~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (260)
|||||.+++.++.++++ .++++|+++|+.......... .........+...+ .. +..... .
T Consensus 149 hSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~-----~~-~~p~~~----~ 218 (332)
T TIGR01607 149 LSMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFM-----SR-VFPTFR----I 218 (332)
T ss_pred ccCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHH-----HH-HCCccc----c
Confidence 99999999999876542 589999999875331100000 00000000000000 00 000000 0
Q ss_pred HHHHHhccCCCCcccHHHHHHHhccCCc---cchHHHHHHHHhhhCCCCCCccCCCC--CCCEEEEecCCCCCCChHHHH
Q 024971 131 RNILCQCYNDTSQVTEELVEKILQPGLE---TGAADVFLEFICYSGGPLPEELLPQV--KCPVLIAWGDKDPWEPIELGR 205 (260)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i--~~P~l~i~g~~D~~~~~~~~~ 205 (260)
.. . ......+...+.+...... ......+..+....... ...+.++ ++|+|+++|++|.+++++..+
T Consensus 219 ~~---~---~~~~~~~~~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~--~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~ 290 (332)
T TIGR01607 219 SK---K---IRYEKSPYVNDIIKFDKFRYDGGITFNLASELIKATDTL--DCDIDYIPKDIPILFIHSKGDCVCSYEGTV 290 (332)
T ss_pred cC---c---cccccChhhhhHHhcCccccCCcccHHHHHHHHHHHHHH--HhhHhhCCCCCCEEEEEeCCCCccCHHHHH
Confidence 00 0 0000011111221111111 11122222222221100 1123344 799999999999999999888
Q ss_pred Hhhcc--CCCccEEEeCCCCCCcchhc-hhHHHHHHHHhhh
Q 024971 206 AYGNF--DSVEDFIVLPNVGHCPQVSL-YLSLSSACLHTLS 243 (260)
Q Consensus 206 ~~~~~--~~~~~~~~~~~~gH~~~~~~-p~~~~~~i~~~l~ 243 (260)
.+.+. .++.+++++++++|.++.|. ++++.+.|.+||+
T Consensus 291 ~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 291 SFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred HHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 87654 35788999999999998874 7889999999985
No 49
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.91 E-value=2.3e-23 Score=138.26 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=129.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
.+||.|++|.+||||...... -..+.++|.+++.+..+++ +.+.+.++|.||||.+++.+|..+| +++
T Consensus 40 e~GyTv~aP~ypGHG~~~e~f-------l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p--~K~ 110 (243)
T COG1647 40 ENGYTVYAPRYPGHGTLPEDF-------LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP--PKK 110 (243)
T ss_pred HCCceEecCCCCCCCCCHHHH-------hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCC--ccc
Confidence 369999999999999876433 3457778887777665555 6789999999999999999999999 899
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCC--c
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGL--E 158 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (260)
+|.++++..... ....+..+.....+ ... ....+.+.....+.... .
T Consensus 111 iv~m~a~~~~k~-------~~~iie~~l~y~~~--------------------~kk----~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 111 IVPMCAPVNVKS-------WRIIIEGLLEYFRN--------------------AKK----YEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred eeeecCCccccc-------chhhhHHHHHHHHH--------------------hhh----ccCCCHHHHHHHHHHhhcch
Confidence 999998754311 01111111111100 000 00111111111111111 1
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc--CCCccEEEeCCCCCCcchh-chhHHH
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQVS-LYLSLS 235 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~-~p~~~~ 235 (260)
......+..+.... ...+..|..|+++++|++|.++|.+.+..+.+. ....++.+++++||.+..+ ..+.+.
T Consensus 160 ~~~~~~~~~~i~~~-----~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~ 234 (243)
T COG1647 160 MTTTAQLKKLIKDA-----RRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVE 234 (243)
T ss_pred HHHHHHHHHHHHHH-----HhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHH
Confidence 11222222222222 456788999999999999999999999887776 3457899999999976655 688899
Q ss_pred HHHHHhhh
Q 024971 236 SACLHTLS 243 (260)
Q Consensus 236 ~~i~~~l~ 243 (260)
+.+..||+
T Consensus 235 e~V~~FL~ 242 (243)
T COG1647 235 EDVITFLE 242 (243)
T ss_pred HHHHHHhh
Confidence 99999986
No 50
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.91 E-value=1.5e-22 Score=154.37 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
++||.|+++|+||+|.|.... ...+......++.+.+... +.+++.++||||||.+++.+|..+|++|++
T Consensus 220 ~~Gy~vl~~D~pG~G~s~~~~-------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a 292 (414)
T PRK05077 220 PRGIAMLTIDMPSVGFSSKWK-------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKA 292 (414)
T ss_pred hCCCEEEEECCCCCCCCCCCC-------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceE
Confidence 568999999999999996532 1223444455666666554 457899999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETG 160 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
+|+++++.... ... ...... .+......+...+.... ...+.....+..
T Consensus 293 ~V~~~~~~~~~-------~~~--~~~~~~----------------~p~~~~~~la~~lg~~~-~~~~~l~~~l~~----- 341 (414)
T PRK05077 293 VACLGPVVHTL-------LTD--PKRQQQ----------------VPEMYLDVLASRLGMHD-ASDEALRVELNR----- 341 (414)
T ss_pred EEEECCccchh-------hcc--hhhhhh----------------chHHHHHHHHHHhCCCC-CChHHHHHHhhh-----
Confidence 99999874210 000 000000 00000000101011000 011111111000
Q ss_pred hHHHHHHHHhhhCCCCCCccC-CCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 161 AADVFLEFICYSGGPLPEELL-PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
+. ... ...+ .++++|+|+|+|++|.++|.+..+.+.+..++.++++++++ ++.+.++++.+.+.
T Consensus 342 ----------~s-l~~-~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~ 406 (414)
T PRK05077 342 ----------YS-LKV-QGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PVYRNFDKALQEIS 406 (414)
T ss_pred ----------cc-chh-hhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHH
Confidence 00 000 1111 56899999999999999999999998888999999999985 55678999999999
Q ss_pred Hhhhh
Q 024971 240 HTLSY 244 (260)
Q Consensus 240 ~~l~~ 244 (260)
+||+.
T Consensus 407 ~wL~~ 411 (414)
T PRK05077 407 DWLED 411 (414)
T ss_pred HHHHH
Confidence 99864
No 51
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.90 E-value=4.9e-23 Score=149.80 Aligned_cols=197 Identities=14% Similarity=0.085 Sum_probs=116.9
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+||+|+++|+||||.|.... .+++++.+|+.++++.+ +.++++++||||||.+++.+|.. +++|+
T Consensus 56 ~G~~v~~~Dl~G~G~S~~~~---------~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~ 125 (274)
T TIGR03100 56 AGFPVLRFDYRGMGDSEGEN---------LGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVA 125 (274)
T ss_pred CCCEEEEeCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCcc
Confidence 58999999999999987532 36677788888887776 45679999999999999999765 46799
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhc-----
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQ----- 154 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 154 (260)
++|+++|...... ... ...+.. .+.........+... +...... .+....+..
T Consensus 126 ~lil~~p~~~~~~-----~~~---~~~~~~---------~~~~~~~~~~~~~~~----~~g~~~~-~~~~~~~~~~~~~~ 183 (274)
T TIGR03100 126 GLVLLNPWVRTEA-----AQA---ASRIRH---------YYLGQLLSADFWRKL----LSGEVNL-GSSLRGLGDALLKA 183 (274)
T ss_pred EEEEECCccCCcc-----cch---HHHHHH---------HHHHHHhChHHHHHh----cCCCccH-HHHHHHHHHHHHhh
Confidence 9999998632110 000 000100 011111111111111 1000000 000011100
Q ss_pred --cCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHH------HHhhccC--CCccEEEeCCCCC
Q 024971 155 --PGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELG------RAYGNFD--SVEDFIVLPNVGH 224 (260)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~------~~~~~~~--~~~~~~~~~~~gH 224 (260)
............. ....+.++++|+++++|++|...+ ... ..+.+.. ++++++.+++++|
T Consensus 184 ~~~~~~~~~~~~~~~---------~~~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H 253 (274)
T TIGR03100 184 RQKGDEVAHGGLAER---------MKAGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADH 253 (274)
T ss_pred hhcCCCcccchHHHH---------HHHHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCc
Confidence 0000000000000 023455678999999999998753 322 3344433 7899999999999
Q ss_pred Ccchh-chhHHHHHHHHhhh
Q 024971 225 CPQVS-LYLSLSSACLHTLS 243 (260)
Q Consensus 225 ~~~~~-~p~~~~~~i~~~l~ 243 (260)
++..+ .++++.+.|.+||+
T Consensus 254 ~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 254 TFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 98544 56999999999985
No 52
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.90 E-value=6.7e-22 Score=153.01 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=130.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHH----HHHhhC-ccch
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGL----QAAVME-PEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~----~~a~~~-p~~v 78 (260)
++||+|+++|++|+|.|..... ...|..+.+.+.+..+++.++.++++++||||||.++. .+++.+ +++|
T Consensus 218 ~qGf~V~~iDwrgpg~s~~~~~-----~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv 292 (532)
T TIGR01838 218 EQGHTVFVISWRNPDASQADKT-----FDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRI 292 (532)
T ss_pred HCCcEEEEEECCCCCcccccCC-----hhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCcc
Confidence 5799999999999998865432 13455556667777888888899999999999999852 245555 7889
Q ss_pred hhceEeccCccccccCCCCCCC-cchhHHHhhhhhh------hhhHHHHHHHhcChHH-HHHHHHhccCCCCcccHHHHH
Q 024971 79 RGMILLNISLRMLHIKKQPWYG-RPLIRSFQNLLRN------TAAGKLFYKMVATSES-VRNILCQCYNDTSQVTEELVE 150 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 150 (260)
++++++++...+........+. ......+...... ..+.. .+........ ....+........... +..
T Consensus 293 ~slvll~t~~Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~-~F~~lrp~~l~w~~~v~~yl~g~~~~~--fdl 369 (532)
T TIGR01838 293 KSATFFTTLLDFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAV-TFSLLRENDLIWNYYVDNYLKGKSPVP--FDL 369 (532)
T ss_pred ceEEEEecCcCCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHH-HHHhcChhhHHHHHHHHHHhcCCCccc--hhH
Confidence 9999999987654321111111 1111111111111 01111 1122222221 2223332222222221 111
Q ss_pred HHhccCCccchHHHHHHH----HhhhC-------CCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEe
Q 024971 151 KILQPGLETGAADVFLEF----ICYSG-------GPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVL 219 (260)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
.++......-....+..+ +.... .......+++|++|++++.|++|.++|.+....+.+.+++.+..++
T Consensus 370 l~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL 449 (532)
T TIGR01838 370 LFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVL 449 (532)
T ss_pred HHHhccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEE
Confidence 112211111122222222 21111 0112356888999999999999999999999988888888889999
Q ss_pred CCCCCCcchhchh
Q 024971 220 PNVGHCPQVSLYL 232 (260)
Q Consensus 220 ~~~gH~~~~~~p~ 232 (260)
+++||.+++++|.
T Consensus 450 ~~sGHi~~ienPp 462 (532)
T TIGR01838 450 GESGHIAGVVNPP 462 (532)
T ss_pred CCCCCchHhhCCC
Confidence 9999999988764
No 53
>PLN02872 triacylglycerol lipase
Probab=99.89 E-value=4.1e-21 Score=144.76 Aligned_cols=236 Identities=14% Similarity=0.144 Sum_probs=137.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCC--CCCccHHHHH-HHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCcc-
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFD--KPFYTFETWA-SQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPE- 76 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~- 76 (260)
.+||+|+++|+||+|.|.+........ -..+++++++ .|+.++++++ ..++++++||||||.+++.++ .+|+
T Consensus 105 ~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~ 183 (395)
T PLN02872 105 DHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNV 183 (395)
T ss_pred hCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHH
Confidence 359999999999998764322110000 1257888998 7999999887 347899999999999998555 5776
Q ss_pred --chhhceEeccCccccccCCCCCCCcchhHHHhh-----h---h------hhhhhHHHHHHHhcChH-HHHHHHHhccC
Q 024971 77 --ICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN-----L---L------RNTAAGKLFYKMVATSE-SVRNILCQCYN 139 (260)
Q Consensus 77 --~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (260)
+|+.+++++|........ .+....+.. . + ........+....+... .....+....+
T Consensus 184 ~~~v~~~~~l~P~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g 257 (395)
T PLN02872 184 VEMVEAAALLCPISYLDHVT------APLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITG 257 (395)
T ss_pred HHHHHHHHHhcchhhhccCC------CHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhC
Confidence 688999999876432111 111100000 0 0 00001111111111110 01111111111
Q ss_pred CCCcccHHHHHHHhccCCccchHHHHHHH--------------------HhhhCCCCCCccCCCC--CCCEEEEecCCCC
Q 024971 140 DTSQVTEELVEKILQPGLETGAADVFLEF--------------------ICYSGGPLPEELLPQV--KCPVLIAWGDKDP 197 (260)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i--~~P~l~i~g~~D~ 197 (260)
............+............+..+ ..+.....+...++++ ++|+++++|++|.
T Consensus 258 ~~~~~n~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~ 337 (395)
T PLN02872 258 TNCCFNASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDG 337 (395)
T ss_pred CCcccchhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCC
Confidence 11222333333333222222222222221 1222223334456777 5899999999999
Q ss_pred CCChHHHHHhhccCCC-ccEEEeCCCCCC---cchhchhHHHHHHHHhhhhcc
Q 024971 198 WEPIELGRAYGNFDSV-EDFIVLPNVGHC---PQVSLYLSLSSACLHTLSYLH 246 (260)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~~~~~~gH~---~~~~~p~~~~~~i~~~l~~~~ 246 (260)
+++++..+.+.+.+++ .+++.++++||. ...+.|+++.+.|.+|++...
T Consensus 338 lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 338 LADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 9999998888888776 578889999995 345889999999999997543
No 54
>PRK10985 putative hydrolase; Provisional
Probab=99.88 E-value=3.8e-22 Score=148.72 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=119.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccc--hhhc
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI--CRGM 81 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~--v~~l 81 (260)
.+||+|+++|+||||.+....+... .....++....+..+.++++..+++++||||||.+++.++.++++. +.++
T Consensus 85 ~~G~~v~~~d~rG~g~~~~~~~~~~---~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~ 161 (324)
T PRK10985 85 KRGWLGVVMHFRGCSGEPNRLHRIY---HSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAA 161 (324)
T ss_pred HCCCEEEEEeCCCCCCCccCCcceE---CCCchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCCCccEE
Confidence 4699999999999998754321100 1112344333333344445667899999999999988888877544 8899
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHH----------HHHH
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEE----------LVEK 151 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 151 (260)
|+++++...... ...+..... ......+..... ............. ...+.+ +.+.
T Consensus 162 v~i~~p~~~~~~----------~~~~~~~~~-~~~~~~l~~~l~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fd~~ 227 (324)
T PRK10985 162 VIVSAPLMLEAC----------SYRMEQGFS-RVYQRYLLNLLK--ANAARKLAAYPGT-LPINLAQLKSVRRLREFDDL 227 (324)
T ss_pred EEEcCCCCHHHH----------HHHHhhhHH-HHHHHHHHHHHH--HHHHHHHHhcccc-ccCCHHHHhcCCcHHHHhhh
Confidence 999987532110 000000000 000000000000 0011111111110 011111 1111
Q ss_pred HhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhch
Q 024971 152 ILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLY 231 (260)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p 231 (260)
+............ ++. .......++++++|+++|+|++|++++.+....+.+..++.++++++++||+.+++..
T Consensus 228 ~~~~~~g~~~~~~---~y~---~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~ 301 (324)
T PRK10985 228 ITARIHGFADAID---YYR---QCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGT 301 (324)
T ss_pred heeccCCCCCHHH---HHH---HCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCC
Confidence 1111111111111 111 1112456788999999999999999998887777777888999999999999998742
Q ss_pred -----hHHHHHHHHhhhhc
Q 024971 232 -----LSLSSACLHTLSYL 245 (260)
Q Consensus 232 -----~~~~~~i~~~l~~~ 245 (260)
.-..+.+.+|++..
T Consensus 302 ~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 302 LLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCCCCccHHHHHHHHHHHh
Confidence 23456666776543
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.88 E-value=5.6e-21 Score=144.08 Aligned_cols=227 Identities=19% Similarity=0.198 Sum_probs=122.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHH-H----HHHHHhhcCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ-L----NDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+||+|+++|++|+|.|+.. .++++++.+ + ..+.+..+.++++++||||||.+++.+++.+|++|
T Consensus 92 ~~G~~V~~~D~~g~g~s~~~----------~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v 161 (350)
T TIGR01836 92 ERGQDVYLIDWGYPDRADRY----------LTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKI 161 (350)
T ss_pred HCCCeEEEEeCCCCCHHHhc----------CCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchhe
Confidence 46999999999999987542 356666533 3 34445557789999999999999999999999999
Q ss_pred hhceEeccCccccccCCCCCC-Ccch-hHHHhhhhhhhh--hHHHHHHHhcC-hHHHHHHHHhccCCCCcccHHHHHHHh
Q 024971 79 RGMILLNISLRMLHIKKQPWY-GRPL-IRSFQNLLRNTA--AGKLFYKMVAT-SESVRNILCQCYNDTSQVTEELVEKIL 153 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (260)
+++|+++++............ .... ...........+ .....+..... ............. ...++....+.
T Consensus 162 ~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~ 238 (350)
T TIGR01836 162 KNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDI---LEDERKVENFL 238 (350)
T ss_pred eeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHh---cCChHHHHHHH
Confidence 999999988754321110000 0000 000000000000 00000000000 0000000000000 00011111110
Q ss_pred -----ccCCccchHHHHHHHHhh----hC---C----CCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCC--cc
Q 024971 154 -----QPGLETGAADVFLEFICY----SG---G----PLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV--ED 215 (260)
Q Consensus 154 -----~~~~~~~~~~~~~~~~~~----~~---~----~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~~ 215 (260)
...........+..+... .. . ......++++++|+++++|++|.++|++..+.+.+..+. .+
T Consensus 239 ~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~ 318 (350)
T TIGR01836 239 RMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYT 318 (350)
T ss_pred HHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeE
Confidence 011111111122221110 00 0 001234678899999999999999999998888777653 45
Q ss_pred EEEeCCCCCCcchhc---hhHHHHHHHHhhhh
Q 024971 216 FIVLPNVGHCPQVSL---YLSLSSACLHTLSY 244 (260)
Q Consensus 216 ~~~~~~~gH~~~~~~---p~~~~~~i~~~l~~ 244 (260)
+++++ +||..++.+ ++++.+.|.+|++.
T Consensus 319 ~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 319 ELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred EEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 66777 699876554 47888888888753
No 56
>PRK13604 luxD acyl transferase; Provisional
Probab=99.85 E-value=1.6e-20 Score=134.60 Aligned_cols=178 Identities=10% Similarity=0.030 Sum_probs=102.9
Q ss_pred CCccEEEEEcCCCC-CCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 4 AKSHRVYSIDLIGY-GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
.+||.|+.+|.||+ |.|++.. ...+......|+..+++.+ +.+++.|+||||||.+|+..|...+ ++
T Consensus 62 ~~G~~vLrfD~rg~~GeS~G~~-------~~~t~s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~~--v~ 132 (307)
T PRK13604 62 SNGFHVIRYDSLHHVGLSSGTI-------DEFTMSIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEID--LS 132 (307)
T ss_pred HCCCEEEEecCCCCCCCCCCcc-------ccCcccccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCCC--CC
Confidence 46999999999988 9997644 2233334466775555554 5568999999999999977776443 88
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcc-cHHHHHHHhccCCc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQV-TEELVEKILQPGLE 158 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (260)
++|+.+|..... ..+...+... .. . +.....+..+. +. .... ...+.......
T Consensus 133 ~lI~~sp~~~l~-------------d~l~~~~~~~-~~-~-~p~~~lp~~~d------~~-g~~l~~~~f~~~~~~~--- 186 (307)
T PRK13604 133 FLITAVGVVNLR-------------DTLERALGYD-YL-S-LPIDELPEDLD------FE-GHNLGSEVFVTDCFKH--- 186 (307)
T ss_pred EEEEcCCcccHH-------------HHHHHhhhcc-cc-c-Ccccccccccc------cc-cccccHHHHHHHHHhc---
Confidence 999999874321 0000000000 00 0 00000000000 00 0000 00111000000
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC--CCccEEEeCCCCCCcc
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~ 227 (260)
.......+.+..+++++|+|+|+|++|.++|.+.++.+.+.. .++++++++|++|.+.
T Consensus 187 -----------~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 187 -----------GWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG 246 (307)
T ss_pred -----------CccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccC
Confidence 000001112445677899999999999999999998887764 4789999999999875
No 57
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.84 E-value=6.9e-20 Score=128.71 Aligned_cols=224 Identities=18% Similarity=0.201 Sum_probs=124.7
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.+.++|.|+-+|.||+.......+.+ -...|++++++++.+++++++++.++.+|-..|+.|..++|..+|++|.|+
T Consensus 51 ~i~~~f~i~Hi~aPGqe~ga~~~p~~---y~yPsmd~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GL 127 (283)
T PF03096_consen 51 EILQNFCIYHIDAPGQEEGAATLPEG---YQYPSMDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGL 127 (283)
T ss_dssp HHHTTSEEEEEE-TTTSTT-----TT--------HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred HHhhceEEEEEeCCCCCCCccccccc---ccccCHHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEE
Confidence 35678999999999998765544322 136699999999999999999999999999999999999999999999999
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCc-ccHHHHHHHhcc---CC
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQ-VTEELVEKILQP---GL 157 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~ 157 (260)
||+++..... ...++....+ ....+.............+...++.... ...+..+.+... ..
T Consensus 128 iLvn~~~~~~----------gw~Ew~~~K~----~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~ 193 (283)
T PF03096_consen 128 ILVNPTCTAA----------GWMEWFYQKL----SSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERI 193 (283)
T ss_dssp EEES---S-------------HHHHHHHHH----H-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-T
T ss_pred EEEecCCCCc----------cHHHHHHHHH----hcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCC
Confidence 9999975321 1111111111 1111111111122222222222221111 122333333322 22
Q ss_pred ccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc--CCCccEEEeCCCCCCcchhchhHHH
Q 024971 158 ETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQVSLYLSLS 235 (260)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~~~~ 235 (260)
.+.....+.+ .+..+.+.....+...||+|++.|+..+... ....+..+ ..+.++..++++|=.+..|+|+.++
T Consensus 194 Np~Nl~~f~~--sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~~--~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~kla 269 (283)
T PF03096_consen 194 NPKNLALFLN--SYNSRTDLSIERPSLGCPVLLVVGDNSPHVD--DVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLA 269 (283)
T ss_dssp THHHHHHHHH--HHHT-----SECTTCCS-EEEEEETTSTTHH--HHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHH
T ss_pred CHHHHHHHHH--HHhccccchhhcCCCCCCeEEEEecCCcchh--hHHHHHhhcCcccceEEEecccCCcccccCcHHHH
Confidence 2223333333 3344444455667778999999999998653 33333333 2356888999999999999999999
Q ss_pred HHHHHhhhhcc
Q 024971 236 SACLHTLSYLH 246 (260)
Q Consensus 236 ~~i~~~l~~~~ 246 (260)
+.++-|++.+.
T Consensus 270 ea~~lFlQG~G 280 (283)
T PF03096_consen 270 EAFKLFLQGMG 280 (283)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHccCC
Confidence 99999998654
No 58
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=131.18 Aligned_cols=223 Identities=21% Similarity=0.276 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
|+|+++|+||||.|. . . ..+...+++++..++++++..+++++||||||.+++.++.++|++++++|++++
T Consensus 51 ~~~~~~d~~g~g~s~--~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 51 YRVIAPDLRGHGRSD--P------A-GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred eEEEEecccCCCCCC--c------c-cccHHHHHHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 999999999999998 1 1 234455599999999999988899999999999999999999999999999998
Q ss_pred CccccccCCCCC--CCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHh----ccCCCCcccHHHHHHHhccCCccc
Q 024971 87 SLRMLHIKKQPW--YGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQ----CYNDTSQVTEELVEKILQPGLETG 160 (260)
Q Consensus 87 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
............ ................... .................. ...................... .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (282)
T COG0596 122 APPPGLLEAALRQPAGAAPLAALADLLLGLDAA-AFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAAFARAAR-A 199 (282)
T ss_pred CCCcccccCccccCccccchhhhhhhhhccchh-hhhhhhhcccccccccccchhccccccccccchhHhhhhhhhcc-c
Confidence 754211111100 0000000000000000000 000000000000000000 0000000000000000000000 0
Q ss_pred hHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCC-ccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 161 AADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
.................+..+++|+++++|++|.+.+......+.+..++ .++.+++++||+++.++|+.+.+.+.
T Consensus 200 ---~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~ 276 (282)
T COG0596 200 ---DLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALL 276 (282)
T ss_pred ---ccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHH
Confidence 00000000000012345667789999999999977776655666666774 89999999999999999999998888
Q ss_pred Hhhh
Q 024971 240 HTLS 243 (260)
Q Consensus 240 ~~l~ 243 (260)
++++
T Consensus 277 ~~~~ 280 (282)
T COG0596 277 AFLE 280 (282)
T ss_pred HHHh
Confidence 7543
No 59
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.9e-18 Score=124.61 Aligned_cols=239 Identities=16% Similarity=0.127 Sum_probs=145.5
Q ss_pred CccEEEEEcCCCCC-CCCCCCCCCCC------CCCCccHHHHHHHHHHHHHhhcCCceE-EEEeChhhHHHHHHHhhCcc
Q 024971 5 KSHRVYSIDLIGYG-YSDKPNPRDFF------DKPFYTFETWASQLNDFCKDVVKDQAF-FICNSIGGLVGLQAAVMEPE 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G-~S~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvGhS~Gg~~a~~~a~~~p~ 76 (260)
..|.||+.|-.|.+ .|+.|...+.. .-..+++.|+++.-..+++++|++++. +||.||||+.++.++..||+
T Consensus 91 ~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd 170 (368)
T COG2021 91 ERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPD 170 (368)
T ss_pred cceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChH
Confidence 46999999999876 55555433222 113478999999889999999999977 88999999999999999999
Q ss_pred chhhceEeccCcccccc-------------CCCCCCCcchhHHHhhhhhhhhhHHHH-HHHhcChHHHHHHHHhccCCCC
Q 024971 77 ICRGMILLNISLRMLHI-------------KKQPWYGRPLIRSFQNLLRNTAAGKLF-YKMVATSESVRNILCQCYNDTS 142 (260)
Q Consensus 77 ~v~~lvl~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 142 (260)
+|+++|.+++....... ....|....+...- .-.......+.+ .-...+++.+.+.+.+......
T Consensus 171 ~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n~G~Y~~~~-~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~ 249 (368)
T COG2021 171 RVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWNGGDYYEGT-QPERGLRLARMLAHLTYRSEEELDERFGRRLQADP 249 (368)
T ss_pred HHhhhheecccccCCHHHHHHHHHHHHHHHhCCCccCCCccCCC-CcchhHHHHHHHHHHHccCHHHHHHHhcccccccc
Confidence 99999999986533210 00001000000000 000000111111 1122333444333332111111
Q ss_pred -c--ccHHHHHHHhccC----CccchHHHHHHHHhhhCCCCC-------CccCCCCCCCEEEEecCCCCCCChHHHHHhh
Q 024971 143 -Q--VTEELVEKILQPG----LETGAADVFLEFICYSGGPLP-------EELLPQVKCPVLIAWGDKDPWEPIELGRAYG 208 (260)
Q Consensus 143 -~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~ 208 (260)
. .....++.|+... ......+.|..+.......+. .+.++++++|++++.-+.|.+.|++..+.+.
T Consensus 250 ~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~ 329 (368)
T COG2021 250 LRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALA 329 (368)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHH
Confidence 1 1122333333321 122222333333332222222 2348899999999999999999999999999
Q ss_pred ccCCCcc-EEEe-CCCCCCcchhchhHHHHHHHHhhhh
Q 024971 209 NFDSVED-FIVL-PNVGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 209 ~~~~~~~-~~~~-~~~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
+.++.+. ++++ ...||..++...+.+...|.+||+.
T Consensus 330 ~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 330 EALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 9888776 7666 3579998888888899999999864
No 60
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=5.4e-19 Score=120.32 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=123.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH-hhcCCceEEEEeChhhHHHHHHHhhCcc---c
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK-DVVKDQAFFICNSIGGLVGLQAAVMEPE---I 77 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvGhS~Gg~~a~~~a~~~p~---~ 77 (260)
.|.....++++++||+|.--..+ -..+++++++.+...+. -...+++.++||||||++|..+|.+... .
T Consensus 29 ~lp~~iel~avqlPGR~~r~~ep-------~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~ 101 (244)
T COG3208 29 RLPADIELLAVQLPGRGDRFGEP-------LLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLP 101 (244)
T ss_pred hCCchhheeeecCCCcccccCCc-------ccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCC
Confidence 35567899999999999875544 35789999999998888 4555799999999999999999976532 1
Q ss_pred hhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCC
Q 024971 78 CRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGL 157 (260)
Q Consensus 78 v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (260)
+.++.+.+...+... .............+..+.... ..+..+ -.++++.+.++ +
T Consensus 102 p~~lfisg~~aP~~~-~~~~i~~~~D~~~l~~l~~lg----------G~p~e~------------led~El~~l~L-P-- 155 (244)
T COG3208 102 PRALFISGCRAPHYD-RGKQIHHLDDADFLADLVDLG----------GTPPEL------------LEDPELMALFL-P-- 155 (244)
T ss_pred cceEEEecCCCCCCc-ccCCccCCCHHHHHHHHHHhC----------CCChHH------------hcCHHHHHHHH-H--
Confidence 555665555433111 000111111111111111100 011000 01112211111 0
Q ss_pred ccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC-CccEEEeCCCCCCcchhchhHHHH
Q 024971 158 ETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQVSLYLSLSS 236 (260)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~p~~~~~ 236 (260)
.+..-+.....+. ...-..++||+.++.|++|..+..+....|.++.. ..++++++| ||+...++.+++.+
T Consensus 156 ------ilRAD~~~~e~Y~-~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~ 227 (244)
T COG3208 156 ------ILRADFRALESYR-YPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDG-GHFFLNQQREEVLA 227 (244)
T ss_pred ------HHHHHHHHhcccc-cCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecC-cceehhhhHHHHHH
Confidence 1111111111111 12225688999999999999999999998888755 678999995 99999999999999
Q ss_pred HHHHhhh
Q 024971 237 ACLHTLS 243 (260)
Q Consensus 237 ~i~~~l~ 243 (260)
.|.+.+.
T Consensus 228 ~i~~~l~ 234 (244)
T COG3208 228 RLEQHLA 234 (244)
T ss_pred HHHHHhh
Confidence 9988885
No 61
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.82 E-value=7.8e-18 Score=116.86 Aligned_cols=223 Identities=18% Similarity=0.215 Sum_probs=142.5
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhce
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
+..+|.|+.+|-|||-.....-+.++ ...|++++++++..++++++.+.++-+|-..|+.|..++|..||++|.|+|
T Consensus 75 i~~~fcv~HV~~PGqe~gAp~~p~~y---~yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLv 151 (326)
T KOG2931|consen 75 ILEHFCVYHVDAPGQEDGAPSFPEGY---PYPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLV 151 (326)
T ss_pred HHhheEEEecCCCccccCCccCCCCC---CCCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEE
Confidence 44569999999999976655444321 356999999999999999999999999999999999999999999999999
Q ss_pred EeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCC-cccHHHHHHHhccC---Cc
Q 024971 83 LLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTS-QVTEELVEKILQPG---LE 158 (260)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~ 158 (260)
|+++.+... ....+.. .......+.............+...++... ....+.++.|.... ..
T Consensus 152 LIn~~~~a~----------gwiew~~----~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N 217 (326)
T KOG2931|consen 152 LINCDPCAK----------GWIEWAY----NKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLN 217 (326)
T ss_pred EEecCCCCc----------hHHHHHH----HHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCC
Confidence 999875321 1111111 111111111111122222223333333222 22344444444332 33
Q ss_pred cchHHHHHHHHhhhCCCCCCccCC----CCCCCEEEEecCCCCCCChHHHHHhhcc--CCCccEEEeCCCCCCcchhchh
Q 024971 159 TGAADVFLEFICYSGGPLPEELLP----QVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQVSLYL 232 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~P~l~i~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~ 232 (260)
+.....+...+. .+.+...... .++||+|++.|++.+.+. ....+... ..+..+..+.++|-.+..++|.
T Consensus 218 ~~Nl~~fl~ayn--~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~--~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~ 293 (326)
T KOG2931|consen 218 PKNLALFLNAYN--GRRDLSIERPKLGTTLKCPVLLVVGDNSPHVS--AVVECNSKLDPTYTTLLKMADCGGLVQEEQPG 293 (326)
T ss_pred hhHHHHHHHHhc--CCCCccccCCCcCccccccEEEEecCCCchhh--hhhhhhcccCcccceEEEEcccCCcccccCch
Confidence 333344433332 2222222222 556999999999988654 23333333 2356788889999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 024971 233 SLSSACLHTLSYLH 246 (260)
Q Consensus 233 ~~~~~i~~~l~~~~ 246 (260)
++.+.+.-|++-..
T Consensus 294 kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 294 KLAEAFKYFLQGMG 307 (326)
T ss_pred HHHHHHHHHHccCC
Confidence 99999999997654
No 62
>PRK11071 esterase YqiA; Provisional
Probab=99.81 E-value=7.7e-19 Score=120.35 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEe
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~ 84 (260)
.+|+|+++|+|||| ++.++++.+++++++.++++++||||||.+++.+|.++|. ++|++
T Consensus 31 ~~~~v~~~dl~g~~------------------~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQLPPYP------------------ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFML---PAVVV 89 (190)
T ss_pred CCCeEEeCCCCCCH------------------HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcCC---CEEEE
Confidence 47999999999984 2577888899999998999999999999999999999983 46888
Q ss_pred ccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHH
Q 024971 85 NISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADV 164 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (260)
+|+..+ ...+........ ..................
T Consensus 90 ~~~~~~-------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~d~------------ 125 (190)
T PRK11071 90 NPAVRP-------------FELLTDYLGENE-------------------NPYTGQQYVLESRHIYDL------------ 125 (190)
T ss_pred CCCCCH-------------HHHHHHhcCCcc-------------------cccCCCcEEEcHHHHHHH------------
Confidence 886421 011110000000 000000001111111111
Q ss_pred HHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhh
Q 024971 165 FLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLS 243 (260)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~ 243 (260)
... . ...+. ..+|+++++|++|.++|.+.+..+.+. ++.++++|++|.. ...+++.+.+.+|+.
T Consensus 126 ----~~~----~-~~~i~-~~~~v~iihg~~De~V~~~~a~~~~~~---~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 126 ----KVM----Q-IDPLE-SPDLIWLLQQTGDEVLDYRQAVAYYAA---CRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred ----Hhc----C-CccCC-ChhhEEEEEeCCCCcCCHHHHHHHHHh---cceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 000 1 12233 678899999999999999999988774 5677889999976 344888888888874
No 63
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.80 E-value=2.2e-18 Score=145.61 Aligned_cols=236 Identities=15% Similarity=0.137 Sum_probs=131.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh---hcCCceEEEEeChhhHHHHHHHhhC-ccchh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD---VVKDQAFFICNSIGGLVGLQAAVME-PEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lvGhS~Gg~~a~~~a~~~-p~~v~ 79 (260)
++||+|+++|+ |.++.+.. ....++.+++..+.+.++. +..++++++||||||.+++.+++.+ +++|+
T Consensus 97 ~~g~~v~~~d~---G~~~~~~~-----~~~~~l~~~i~~l~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~ 168 (994)
T PRK07868 97 RAGLDPWVIDF---GSPDKVEG-----GMERNLADHVVALSEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYRRSKDIA 168 (994)
T ss_pred HCCCEEEEEcC---CCCChhHc-----CccCCHHHHHHHHHHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhcCCCccc
Confidence 46899999994 66655431 1235777777666666654 3446899999999999999998755 56899
Q ss_pred hceEeccCccccccCCCCCCC-------cchhHHHhhhhhhhh-hHHHHHHHhcC---hHHHHHHHHhccCCCCcccHHH
Q 024971 80 GMILLNISLRMLHIKKQPWYG-------RPLIRSFQNLLRNTA-AGKLFYKMVAT---SESVRNILCQCYNDTSQVTEEL 148 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 148 (260)
++|+++++............. ......+........ .....+..... ......++..........+++.
T Consensus 169 ~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~ 248 (994)
T PRK07868 169 SIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQ 248 (994)
T ss_pred eEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchh
Confidence 999999886542211000000 000000000000000 00000111100 0111112222222221222222
Q ss_pred HHHHhccC---Ccc--chHHHHHHHHhhhCCC-------CCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccE
Q 024971 149 VEKILQPG---LET--GAADVFLEFICYSGGP-------LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDF 216 (260)
Q Consensus 149 ~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~ 216 (260)
...+.... ... ........+....... .....+++|++|+|+|+|++|.++|++..+.+.+..++.++
T Consensus 249 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~ 328 (994)
T PRK07868 249 QRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPNAEV 328 (994)
T ss_pred hHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeE
Confidence 22222111 011 1112222222110100 00135889999999999999999999999999988999887
Q ss_pred -EEeCCCCCCcchh---chhHHHHHHHHhhhhccc
Q 024971 217 -IVLPNVGHCPQVS---LYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 217 -~~~~~~gH~~~~~---~p~~~~~~i~~~l~~~~~ 247 (260)
.+++++||+.++- .++++...|.+||++-+.
T Consensus 329 ~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~ 363 (994)
T PRK07868 329 YESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEG 363 (994)
T ss_pred EEEeCCCCCEeeeechhhhhhhChHHHHHHHHhcc
Confidence 6789999986653 578888999999987654
No 64
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.80 E-value=9.4e-19 Score=119.95 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=113.6
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh-hc-CCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-VV-KDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
+++|+++|++|+|.|.+.+. +. ..-+.++.+.+.++. .| .++++|+|+|+|+..++.+|.+.| +.++||
T Consensus 88 n~nv~~~DYSGyG~S~G~ps------E~-n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL 158 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGRSSGKPS------ER-NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP--LAAVVL 158 (258)
T ss_pred cceEEEEecccccccCCCcc------cc-cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC--cceEEE
Confidence 78999999999999998772 22 222223333333333 33 578999999999999999999998 999999
Q ss_pred eccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHH
Q 024971 84 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAAD 163 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (260)
.+|...... -..... ... ++ .+
T Consensus 159 ~SPf~S~~r----------------v~~~~~----------------------------~~~------~~--------~d 180 (258)
T KOG1552|consen 159 HSPFTSGMR----------------VAFPDT----------------------------KTT------YC--------FD 180 (258)
T ss_pred eccchhhhh----------------hhccCc----------------------------ceE------Ee--------ec
Confidence 999642210 000000 000 00 00
Q ss_pred HHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCc-cEEEeCCCCCCcchhchhHHHHHHHHhh
Q 024971 164 VFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQVSLYLSLSSACLHTL 242 (260)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~~l 242 (260)
. ....+..+.++||+|+++|++|.+++....+.+.+..++. +-.++.|+||.-. +...++.+.+.+|+
T Consensus 181 ~----------f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~-~~~~~yi~~l~~f~ 249 (258)
T KOG1552|consen 181 A----------FPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDI-ELYPEYIEHLRRFI 249 (258)
T ss_pred c----------ccccCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCccc-ccCHHHHHHHHHHH
Confidence 0 0003567889999999999999999999999988886654 7788899999864 44567777888888
Q ss_pred hhccc
Q 024971 243 SYLHT 247 (260)
Q Consensus 243 ~~~~~ 247 (260)
.....
T Consensus 250 ~~~~~ 254 (258)
T KOG1552|consen 250 SSVLP 254 (258)
T ss_pred HHhcc
Confidence 76543
No 65
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.79 E-value=1.2e-19 Score=124.83 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=117.4
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc---CCceEEEEeChhhHHHHHHHhh--Cccchhh
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVM--EPEICRG 80 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lvGhS~Gg~~a~~~a~~--~p~~v~~ 80 (260)
..+|+++|+||||+|...+. ...+.+.+++|+.++++.+- ..+++||||||||.+|.+.|.. -|. +.|
T Consensus 102 ~~r~~a~DlRgHGeTk~~~e------~dlS~eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps-l~G 174 (343)
T KOG2564|consen 102 RCRCLALDLRGHGETKVENE------DDLSLETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS-LAG 174 (343)
T ss_pred ceeEEEeeccccCccccCCh------hhcCHHHHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchh-hhc
Confidence 46789999999999988773 67899999999999999883 3579999999999999887754 465 889
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCC---Cc--ccHHHHH-----
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDT---SQ--VTEELVE----- 150 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~----- 150 (260)
+++++-.-.. .......+..+++..+.... . -...+..-++.....+ .. ++.....
T Consensus 175 l~viDVVEgt---------AmeAL~~m~~fL~~rP~~F~---S--i~~Ai~W~v~sg~~Rn~~SArVsmP~~~~~~~eGh 240 (343)
T KOG2564|consen 175 LVVIDVVEGT---------AMEALNSMQHFLRNRPKSFK---S--IEDAIEWHVRSGQLRNRDSARVSMPSQLKQCEEGH 240 (343)
T ss_pred eEEEEEechH---------HHHHHHHHHHHHhcCCcccc---c--hhhHHHHHhccccccccccceEecchheeeccCCC
Confidence 9988864210 01111122222222111000 0 0000000010000000 00 0000000
Q ss_pred HHhccCCccchHHHH-HHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchh
Q 024971 151 KILQPGLETGAADVF-LEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVS 229 (260)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 229 (260)
.|... ........| ..++.- ....+-...+|.++|.+..|..-..-. +-+.-..-++.+++.+||+.+.+
T Consensus 241 ~yvwr-tdL~kte~YW~gWF~g-----LS~~Fl~~p~~klLilAg~d~LDkdLt---iGQMQGk~Q~~vL~~~GH~v~ED 311 (343)
T KOG2564|consen 241 CYVWR-TDLEKTEQYWKGWFKG-----LSDKFLGLPVPKLLILAGVDRLDKDLT---IGQMQGKFQLQVLPLCGHFVHED 311 (343)
T ss_pred cEEEE-eeccccchhHHHHHhh-----hhhHhhCCCccceeEEecccccCccee---eeeeccceeeeeecccCceeccC
Confidence 00000 000011111 111110 123344567888888888876432111 11222335788999999999999
Q ss_pred chhHHHHHHHHhhhhc
Q 024971 230 LYLSLSSACLHTLSYL 245 (260)
Q Consensus 230 ~p~~~~~~i~~~l~~~ 245 (260)
.|..++..+..|+...
T Consensus 312 ~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 312 SPHKVAECLCVFWIRN 327 (343)
T ss_pred CcchHHHHHHHHHhhh
Confidence 9999999999998543
No 66
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.79 E-value=5.3e-18 Score=119.36 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCC-CCCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPR-DFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
++||.|+.+|+||.+........ .........++|..+.+..+++.. +.+++.++|||+||.+++.++.++|+++++
T Consensus 12 ~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a 91 (213)
T PF00326_consen 12 SQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKA 91 (213)
T ss_dssp TTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSE
T ss_pred hCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeee
Confidence 68999999999998753221000 000012223444444444444442 346899999999999999999999999999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETG 160 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
++..++......... .... .... .... ...... ..+.
T Consensus 92 ~v~~~g~~d~~~~~~--------~~~~--------~~~~-------------~~~~-~~~~~~-~~~~------------ 128 (213)
T PF00326_consen 92 AVAGAGVSDLFSYYG--------TTDI--------YTKA-------------EYLE-YGDPWD-NPEF------------ 128 (213)
T ss_dssp EEEESE-SSTTCSBH--------HTCC--------HHHG-------------HHHH-HSSTTT-SHHH------------
T ss_pred eeccceecchhcccc--------cccc--------cccc-------------cccc-cCccch-hhhh------------
Confidence 999998653311000 0000 0000 0000 000000 1111
Q ss_pred hHHHHHHHHhhhCCCCCCccCCC--CCCCEEEEecCCCCCCChHHHHHhhc----cCCCccEEEeCCCCCCcc-hhchhH
Q 024971 161 AADVFLEFICYSGGPLPEELLPQ--VKCPVLIAWGDKDPWEPIELGRAYGN----FDSVEDFIVLPNVGHCPQ-VSLYLS 233 (260)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--i~~P~l~i~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~gH~~~-~~~p~~ 233 (260)
+..... ...+.+ +++|+|+++|++|..+|++.+..+.+ ...+++++++|++||... .+...+
T Consensus 129 ----~~~~s~-------~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~ 197 (213)
T PF00326_consen 129 ----YRELSP-------ISPADNVQIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRD 197 (213)
T ss_dssp ----HHHHHH-------GGGGGGCGGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHH
T ss_pred ----hhhhcc-------ccccccccCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHH
Confidence 111110 122333 78999999999999999887766443 344589999999999544 455567
Q ss_pred HHHHHHHhhhh
Q 024971 234 LSSACLHTLSY 244 (260)
Q Consensus 234 ~~~~i~~~l~~ 244 (260)
..+.+.+|++.
T Consensus 198 ~~~~~~~f~~~ 208 (213)
T PF00326_consen 198 WYERILDFFDK 208 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777788754
No 67
>PRK10566 esterase; Provisional
Probab=99.78 E-value=8.3e-18 Score=121.46 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=45.7
Q ss_pred cCCCC-CCCEEEEecCCCCCCChHHHHHhhccCC------CccEEEeCCCCCCcchhchhHHHHHHHHhhhh
Q 024971 180 LLPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDS------VEDFIVLPNVGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 180 ~~~~i-~~P~l~i~g~~D~~~~~~~~~~~~~~~~------~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
.+.++ ++|+|+++|++|.++|.+..+.+.+.++ +++++.++++||... + ...+.+.+||+.
T Consensus 180 ~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~ 247 (249)
T PRK10566 180 QLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQ 247 (249)
T ss_pred hhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHh
Confidence 34555 6999999999999999998888766532 356778899999864 2 345667777763
No 68
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.74 E-value=5.1e-16 Score=119.57 Aligned_cols=211 Identities=11% Similarity=0.100 Sum_probs=120.6
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHH----HHhhC
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQ----AAVME 74 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~----~a~~~ 74 (260)
+.+||+|+++|+++-+.+.. ..+++++++.+.+.++.+ |.++++++|||+||.++.. +++++
T Consensus 244 v~qG~~VflIsW~nP~~~~r----------~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~ 313 (560)
T TIGR01839 244 LKNQLQVFIISWRNPDKAHR----------EWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALG 313 (560)
T ss_pred HHcCCeEEEEeCCCCChhhc----------CCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcC
Confidence 46899999999999776643 468899988777777665 5689999999999999997 78888
Q ss_pred cc-chhhceEeccCccccccCCCCCCC-cchhHHHhhh------hhhhhhHHHHHHHhcChHHH-HHHHHhccCCCCccc
Q 024971 75 PE-ICRGMILLNISLRMLHIKKQPWYG-RPLIRSFQNL------LRNTAAGKLFYKMVATSESV-RNILCQCYNDTSQVT 145 (260)
Q Consensus 75 p~-~v~~lvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (260)
++ +|++++++.++..+........+. .......... +....+.. .+..+.....+ ...+...........
T Consensus 314 ~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~-~F~~LrP~dliw~y~v~~yllg~~p~~ 392 (560)
T TIGR01839 314 QLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAK-VFAWMRPNDLIWNYWVNNYLLGNEPPA 392 (560)
T ss_pred CCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHH-HHHhcCchhhhHHHHHHHhhcCCCcch
Confidence 86 799999999988754322111111 1111111111 11111111 12222222222 222222212222222
Q ss_pred HHHHHHHhccCCcc-c-hHHHHHHHHhhhCCC--------CCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC-Cc
Q 024971 146 EELVEKILQPGLET-G-AADVFLEFICYSGGP--------LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VE 214 (260)
Q Consensus 146 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~--------~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~ 214 (260)
.+ ...+....... + ....+..++...... ...-.+++|+||++++.|+.|.++|++.+..+.+... +.
T Consensus 393 fd-ll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs~~ 471 (560)
T TIGR01839 393 FD-ILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGGKR 471 (560)
T ss_pred hh-HHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCCCe
Confidence 22 22222222221 1 112222322211110 0123578999999999999999999999988877754 45
Q ss_pred cEEEeCCCCCCc
Q 024971 215 DFIVLPNVGHCP 226 (260)
Q Consensus 215 ~~~~~~~~gH~~ 226 (260)
+++..+ +||..
T Consensus 472 ~fvl~~-gGHIg 482 (560)
T TIGR01839 472 RFVLSN-SGHIQ 482 (560)
T ss_pred EEEecC-CCccc
Confidence 666655 68853
No 69
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.73 E-value=1.5e-17 Score=110.07 Aligned_cols=121 Identities=24% Similarity=0.346 Sum_probs=90.7
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
++||.|+.+|+||+|.+... ...+++.+++. .+..+.++++++|||+||.+++.++.+. .+++++|+
T Consensus 24 ~~G~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~ 90 (145)
T PF12695_consen 24 EQGYAVVAFDYPGHGDSDGA----------DAVERVLADIR--AGYPDPDRIILIGHSMGGAIAANLAARN-PRVKAVVL 90 (145)
T ss_dssp HTTEEEEEESCTTSTTSHHS----------HHHHHHHHHHH--HHHCTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEE
T ss_pred HCCCEEEEEecCCCCccchh----------HHHHHHHHHHH--hhcCCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEE
Confidence 46899999999999988331 24444444433 1123667999999999999999999988 67999999
Q ss_pred eccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHH
Q 024971 84 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAAD 163 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (260)
+++.+.
T Consensus 91 ~~~~~~-------------------------------------------------------------------------- 96 (145)
T PF12695_consen 91 LSPYPD-------------------------------------------------------------------------- 96 (145)
T ss_dssp ESESSG--------------------------------------------------------------------------
T ss_pred ecCccc--------------------------------------------------------------------------
Confidence 998210
Q ss_pred HHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC-CccEEEeCCCCCC
Q 024971 164 VFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHC 225 (260)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 225 (260)
.+.+.+.+.|+++++|++|..++.+..+.+.+..+ +.++.+++|++|+
T Consensus 97 --------------~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 --------------SEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp --------------CHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred --------------hhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 11233455699999999999999988888766644 6899999999995
No 70
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.73 E-value=1.8e-16 Score=110.30 Aligned_cols=80 Identities=24% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCC-ceEEEEeChhhHHHHHHHhhCccchhhce
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
..|.|+|.+++||+|.++.+. ...++-++....+.++++.++++ +++.+|||.||-.|+.+|..+| +.|++
T Consensus 60 ~~~iR~I~iN~PGf~~t~~~~------~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~~--~~g~~ 131 (297)
T PF06342_consen 60 EAGIRFIGINYPGFGFTPGYP------DQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTHP--LHGLV 131 (297)
T ss_pred HcCeEEEEeCCCCCCCCCCCc------ccccChHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcCc--cceEE
Confidence 368999999999999999877 47889999999999999999875 6889999999999999999996 67999
Q ss_pred EeccCcccc
Q 024971 83 LLNISLRML 91 (260)
Q Consensus 83 l~~~~~~~~ 91 (260)
+++|+....
T Consensus 132 lin~~G~r~ 140 (297)
T PF06342_consen 132 LINPPGLRP 140 (297)
T ss_pred EecCCcccc
Confidence 999986543
No 71
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.71 E-value=1.1e-15 Score=101.51 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=114.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCc---eEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ---AFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.|+.++.+|.+|.|+|+.... .-.....++|+..+++++.... -+++|||-||.+++.+|.++++ +.-+
T Consensus 61 ~gis~fRfDF~GnGeS~gsf~-------~Gn~~~eadDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~v 132 (269)
T KOG4667|consen 61 EGISAFRFDFSGNGESEGSFY-------YGNYNTEADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHD-IRNV 132 (269)
T ss_pred cCceEEEEEecCCCCcCCccc-------cCcccchHHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcC-chhe
Confidence 589999999999999988652 2344556799999999985432 3688999999999999999987 6666
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCC--------CCcccHHHHHHHh
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYND--------TSQVTEELVEKIL 153 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 153 (260)
|-+++-... +.... .. ..+..+.....+.+-+ ...+.++.....+
T Consensus 133 iNcsGRydl----------~~~I~---eR--------------lg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrL 185 (269)
T KOG4667|consen 133 INCSGRYDL----------KNGIN---ER--------------LGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRL 185 (269)
T ss_pred EEcccccch----------hcchh---hh--------------hcccHHHHHHhCCceecCcccCCcCceecHHHHHHHH
Confidence 666553221 11010 00 0111111111111111 0112222222111
Q ss_pred ccCCccchHHHHHHHHhhhCCCCCCccCC--CCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhch
Q 024971 154 QPGLETGAADVFLEFICYSGGPLPEELLP--QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLY 231 (260)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p 231 (260)
.. +..+... ..+||||-++|..|.++|.+.++++++.+|+.++.+++|+.|.....+
T Consensus 186 nt--------------------d~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~~q- 244 (269)
T KOG4667|consen 186 NT--------------------DIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTGHQ- 244 (269)
T ss_pred hc--------------------hhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccchh-
Confidence 10 1112222 236999999999999999999999999999999999999999755432
Q ss_pred hHHHHHHHHhh
Q 024971 232 LSLSSACLHTL 242 (260)
Q Consensus 232 ~~~~~~i~~~l 242 (260)
.+.......|.
T Consensus 245 ~~l~~lgl~f~ 255 (269)
T KOG4667|consen 245 SQLVSLGLEFI 255 (269)
T ss_pred hhHhhhcceeE
Confidence 34444444444
No 72
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.70 E-value=4.6e-17 Score=108.16 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=114.8
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh------cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+..|+.+++||+|.|++.+. -+.+.-|-..+++++ ...++++.|-|.||++|..+|++..+++.
T Consensus 106 ~mnv~ivsYRGYG~S~Gsps----------E~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~ 175 (300)
T KOG4391|consen 106 KMNVLIVSYRGYGKSEGSPS----------EEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRIS 175 (300)
T ss_pred CceEEEEEeeccccCCCCcc----------ccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhhee
Confidence 57899999999999998762 222333334444444 34589999999999999999999999999
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
++|+-++....+...... .. +.. ......++.
T Consensus 176 ~~ivENTF~SIp~~~i~~-------------v~--p~~----------------------------~k~i~~lc~----- 207 (300)
T KOG4391|consen 176 AIIVENTFLSIPHMAIPL-------------VF--PFP----------------------------MKYIPLLCY----- 207 (300)
T ss_pred eeeeechhccchhhhhhe-------------ec--cch----------------------------hhHHHHHHH-----
Confidence 999998864331100000 00 000 000000000
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC--CccEEEeCCCCCCcchhchhHHHHH
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQVSLYLSLSSA 237 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~~~p~~~~~~ 237 (260)
.........+.+-+.|.|++.|.+|.++|+...+.+.+..| +.++.++|++.|.-..- -+-..++
T Consensus 208 ------------kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-~dGYfq~ 274 (300)
T KOG4391|consen 208 ------------KNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWI-CDGYFQA 274 (300)
T ss_pred ------------HhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEE-eccHHHH
Confidence 00000023344567999999999999999999999888865 46899999999965443 3678889
Q ss_pred HHHhhhhccc
Q 024971 238 CLHTLSYLHT 247 (260)
Q Consensus 238 i~~~l~~~~~ 247 (260)
|.+|+.+...
T Consensus 275 i~dFlaE~~~ 284 (300)
T KOG4391|consen 275 IEDFLAEVVK 284 (300)
T ss_pred HHHHHHHhcc
Confidence 9999977765
No 73
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=107.07 Aligned_cols=219 Identities=15% Similarity=0.109 Sum_probs=114.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc--c
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE--I 77 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~--~ 77 (260)
++||.|++++.|||+.+....++-+. .-+.+|+..+++.+ ...++..+|.|+||.....+..+..+ .
T Consensus 102 ~rg~~~Vv~~~Rgcs~~~n~~p~~yh-------~G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~d~~ 174 (345)
T COG0429 102 RRGWLVVVFHFRGCSGEANTSPRLYH-------SGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGDDLP 174 (345)
T ss_pred hcCCeEEEEecccccCCcccCcceec-------ccchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhccCcc
Confidence 57999999999999999876643221 11224555554444 55799999999999555555444322 2
Q ss_pred hhhceEeccCccccccC---CCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCccc-HHHHHHH-
Q 024971 78 CRGMILLNISLRMLHIK---KQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVT-EELVEKI- 152 (260)
Q Consensus 78 v~~lvl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 152 (260)
+.+.+.++.+....... ...+..+.+...+ .+.+.+. +..-+... ....... .+..+..
T Consensus 175 ~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l---------~~~L~~~------~~~kl~~l-~~~~p~~~~~~ik~~~ 238 (345)
T COG0429 175 LDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL---------LRNLKRN------AARKLKEL-EPSLPGTVLAAIKRCR 238 (345)
T ss_pred cceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH---------HHHHHHH------HHHHHHhc-CcccCcHHHHHHHhhc
Confidence 55555555543221000 0000000000000 0000000 00001111 0000000 1111110
Q ss_pred --hc-cCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhc-cCCCccEEEeCCCCCCcch
Q 024971 153 --LQ-PGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGHCPQV 228 (260)
Q Consensus 153 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~gH~~~~ 228 (260)
.+ ...-.....-+.+...+.........+++|.+|+|+|++.+|++++++....... ..|++.+.+-+.+||..++
T Consensus 239 ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl 318 (345)
T COG0429 239 TIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFL 318 (345)
T ss_pred hHHhccceeeecccCCCcHHHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEec
Confidence 00 0000011111111222222333467889999999999999999999987766655 6888999999999998877
Q ss_pred h----chh-HHHHHHHHhhhhc
Q 024971 229 S----LYL-SLSSACLHTLSYL 245 (260)
Q Consensus 229 ~----~p~-~~~~~i~~~l~~~ 245 (260)
. +|. -..+.+.+|++..
T Consensus 319 ~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 319 GGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cCccccchhhHHHHHHHHHHHH
Confidence 6 343 3456677777543
No 74
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.67 E-value=3.7e-16 Score=111.72 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=65.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH---hhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK---DVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.||+|+++|+||||.|.... ...+++.+++|+..+++ +.+.++++++||||||.+++.+|.++|++++++
T Consensus 55 ~Gy~Vl~~Dl~G~G~S~g~~-------~~~~~~~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~l 127 (266)
T TIGR03101 55 GGFGVLQIDLYGCGDSAGDF-------AAARWDVWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNRL 127 (266)
T ss_pred CCCEEEEECCCCCCCCCCcc-------ccCCHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccceE
Confidence 68999999999999997654 23577888888776544 446679999999999999999999999999999
Q ss_pred eEeccCc
Q 024971 82 ILLNISL 88 (260)
Q Consensus 82 vl~~~~~ 88 (260)
|+++|..
T Consensus 128 VL~~P~~ 134 (266)
T TIGR03101 128 VLWQPVV 134 (266)
T ss_pred EEecccc
Confidence 9999864
No 75
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.66 E-value=8.9e-15 Score=107.92 Aligned_cols=220 Identities=17% Similarity=0.140 Sum_probs=118.3
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCccc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEI 77 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~~ 77 (260)
+..+||+|++++.||+|.|.-..++-+ + ..+.+|+.++++++ ...+...+|.||||.+.+.|..+..++
T Consensus 150 a~~~G~r~VVfN~RG~~g~~LtTpr~f------~-ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~ 222 (409)
T KOG1838|consen 150 AQRKGYRVVVFNHRGLGGSKLTTPRLF------T-AGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDN 222 (409)
T ss_pred HHhCCcEEEEECCCCCCCCccCCCcee------e-cCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCC
Confidence 456899999999999999988775432 2 12344444444444 445899999999999999999875443
Q ss_pred ---hhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHh-----cChH-HHHHHHHhccCCCCcccHHH
Q 024971 78 ---CRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMV-----ATSE-SVRNILCQCYNDTSQVTEEL 148 (260)
Q Consensus 78 ---v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (260)
+.++++.+|. ... .....+..........+.+.... .... .+................++
T Consensus 223 ~~l~~a~~v~~Pw-d~~----------~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreF 291 (409)
T KOG1838|consen 223 TPLIAAVAVCNPW-DLL----------AASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREF 291 (409)
T ss_pred CCceeEEEEeccc-hhh----------hhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHH
Confidence 3444444443 210 00000000000000011000000 0000 00000000001111222333
Q ss_pred HHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHH-HHhhccCCCccEEEeCCCCCCcc
Q 024971 149 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~gH~~~ 227 (260)
-+.+......-...+.|. ........+.+|++|+|+|++.+|+++|.+.. ....+..|++-+++-..+||..+
T Consensus 292 D~~~t~~~~gf~~~deYY------~~aSs~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgf 365 (409)
T KOG1838|consen 292 DEALTRPMFGFKSVDEYY------KKASSSNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGF 365 (409)
T ss_pred HhhhhhhhcCCCcHHHHH------hhcchhhhcccccccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeee
Confidence 333333333322222222 22333567889999999999999999998543 33455578887888888999988
Q ss_pred hhc----hhHHHHH-HHHhhhhc
Q 024971 228 VSL----YLSLSSA-CLHTLSYL 245 (260)
Q Consensus 228 ~~~----p~~~~~~-i~~~l~~~ 245 (260)
+|. +....+. +.+|+..+
T Consensus 366 leg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 366 LEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred eccCCCccchhHHHHHHHHHHHH
Confidence 876 2233333 66666443
No 76
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.66 E-value=7.1e-15 Score=110.13 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=131.2
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhC-----ccc
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME-----PEI 77 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~-----p~~ 77 (260)
|+ |+.|+.+|+..-+...... ..++++++++.+.++++++|.+ ++++|+|+||..++.+++.. |++
T Consensus 127 l~-g~dVYl~DW~~p~~vp~~~-------~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~ 197 (406)
T TIGR01849 127 LP-DHDVYITDWVNARMVPLSA-------GKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQ 197 (406)
T ss_pred hC-CCcEEEEeCCCCCCCchhc-------CCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCC
Confidence 45 9999999999888654333 4679999999999999999877 99999999999977776654 667
Q ss_pred hhhceEeccCcccccc-CCCCCC-CcchhHHHhhhhhh------------hhhHHHH---HHHhcCh---HHHHHHHHhc
Q 024971 78 CRGMILLNISLRMLHI-KKQPWY-GRPLIRSFQNLLRN------------TAAGKLF---YKMVATS---ESVRNILCQC 137 (260)
Q Consensus 78 v~~lvl~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~---~~~~~~~~~~ 137 (260)
+++++++++++..... ...... .......+...... ...+... +...... .....++...
T Consensus 198 ~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~~F~~mnp~r~~~~~~~~~~~l 277 (406)
T TIGR01849 198 PRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQLAGFISMNLDRHTKAHSDFFLHL 277 (406)
T ss_pred cceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 9999999998765421 110000 00011111111100 0000000 0000111 1112222222
Q ss_pred cCCCCcccHHHH---HHHhccCCccchHHHHHHHHh----hhCC-------CCCCccCCCCC-CCEEEEecCCCCCCChH
Q 024971 138 YNDTSQVTEELV---EKILQPGLETGAADVFLEFIC----YSGG-------PLPEELLPQVK-CPVLIAWGDKDPWEPIE 202 (260)
Q Consensus 138 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~i~-~P~l~i~g~~D~~~~~~ 202 (260)
............ ..+.. ...-....+.+... .... ....-.+++|+ +|++.+.|++|.++++.
T Consensus 278 ~~gd~~~~~~~~~f~~~y~d--~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I~~~pll~V~ge~D~I~p~~ 355 (406)
T TIGR01849 278 VKGDGQEADKHRIFYDEYLA--VMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRVDPGAITRVALLTVEGENDDISGLG 355 (406)
T ss_pred hcCCcchHHHHHHHHHHhhh--ccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEecHHHCcccceEEEeccCCCcCCHH
Confidence 211111111111 11111 11111222222221 1110 01123567899 99999999999999999
Q ss_pred HHHHhhccC---C--CccEEEeCCCCCCcchh---chhHHHHHHHHhhhh
Q 024971 203 LGRAYGNFD---S--VEDFIVLPNVGHCPQVS---LYLSLSSACLHTLSY 244 (260)
Q Consensus 203 ~~~~~~~~~---~--~~~~~~~~~~gH~~~~~---~p~~~~~~i~~~l~~ 244 (260)
..+.+.+.. + +.+....+++||+..+- -++++...|.+||..
T Consensus 356 qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 356 QTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred HhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 988877753 4 23466777899986653 367788888888864
No 77
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.65 E-value=2.6e-14 Score=106.23 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=100.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
.+|+.++++|.||.|.|...+- ..+.+.+...+.+.+... +.+++.++|.|+||.+|.++|..+++|+++
T Consensus 216 ~rGiA~LtvDmPG~G~s~~~~l-------~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~Rlka 288 (411)
T PF06500_consen 216 PRGIAMLTVDMPGQGESPKWPL-------TQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKA 288 (411)
T ss_dssp HCT-EEEEE--TTSGGGTTT-S--------S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SE
T ss_pred hCCCEEEEEccCCCcccccCCC-------CcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceee
Confidence 4899999999999999865431 122234455555555544 345899999999999999999999899999
Q ss_pred ceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccc
Q 024971 81 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETG 160 (260)
Q Consensus 81 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
+|..+++.... +....... ..+......+...++.... +.+....-+.
T Consensus 289 vV~~Ga~vh~~------------ft~~~~~~-------------~~P~my~d~LA~rlG~~~~-~~~~l~~el~------ 336 (411)
T PF06500_consen 289 VVALGAPVHHF------------FTDPEWQQ-------------RVPDMYLDVLASRLGMAAV-SDESLRGELN------ 336 (411)
T ss_dssp EEEES---SCG------------GH-HHHHT-------------TS-HHHHHHHHHHCT-SCE--HHHHHHHGG------
T ss_pred EeeeCchHhhh------------hccHHHHh-------------cCCHHHHHHHHHHhCCccC-CHHHHHHHHH------
Confidence 99999874221 00000000 0111111122222221111 1111111111
Q ss_pred hHHHHHHHHhhhCCCCCCccC--CCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHH
Q 024971 161 AADVFLEFICYSGGPLPEELL--PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSAC 238 (260)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~--~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i 238 (260)
.+.-. ....+ .+.++|+|.+.|++|.++|.+..+.++....+.+...++... ....-+.-...+
T Consensus 337 ---------~~SLk--~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~---~~~gy~~al~~~ 402 (411)
T PF06500_consen 337 ---------KFSLK--TQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKP---LHMGYPQALDEI 402 (411)
T ss_dssp ---------GGSTT--TTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSS---HHHHHHHHHHHH
T ss_pred ---------hcCcc--hhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCc---cccchHHHHHHH
Confidence 11000 01233 677899999999999999999999998887777888887543 333344555666
Q ss_pred HHhhh
Q 024971 239 LHTLS 243 (260)
Q Consensus 239 ~~~l~ 243 (260)
.+||+
T Consensus 403 ~~Wl~ 407 (411)
T PF06500_consen 403 YKWLE 407 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 67765
No 78
>PLN02442 S-formylglutathione hydrolase
Probab=99.64 E-value=1.2e-14 Score=106.23 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
+++...+....+.++.++++++||||||..|+.++.++|+++++++.+++..
T Consensus 127 ~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 178 (283)
T PLN02442 127 KELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIA 178 (283)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCcc
Confidence 4444445555555677889999999999999999999999999999999864
No 79
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.61 E-value=4.1e-14 Score=92.62 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=103.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
..||.++.+|+||-|.|.+... ....-.+-+..+.++++....+ .+.+.|+|+|+.|++.+|.+.|+ ....
T Consensus 58 ~~G~atlRfNfRgVG~S~G~fD------~GiGE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~ 130 (210)
T COG2945 58 KRGFATLRFNFRGVGRSQGEFD------NGIGELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPE-ILVF 130 (210)
T ss_pred hCCceEEeecccccccccCccc------CCcchHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhccc-ccce
Confidence 4699999999999999998763 2222222223333444443322 34688999999999999999986 4555
Q ss_pred eEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccch
Q 024971 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (260)
Q Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
+.+.|++... .
T Consensus 131 is~~p~~~~~-------------------------------------------------------d-------------- 141 (210)
T COG2945 131 ISILPPINAY-------------------------------------------------------D-------------- 141 (210)
T ss_pred eeccCCCCch-------------------------------------------------------h--------------
Confidence 5555542100 0
Q ss_pred HHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHh
Q 024971 162 ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHT 241 (260)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~ 241 (260)
...+....+|.++|+|+.|.+++......+++. ...+++++++++||.+- +-+.+.+.|.+|
T Consensus 142 ----------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~g-Kl~~l~~~i~~~ 203 (210)
T COG2945 142 ----------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFHG-KLIELRDTIADF 203 (210)
T ss_pred ----------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceecc-cHHHHHHHHHHH
Confidence 112344568999999999999998888877777 34688899999999875 457888888888
Q ss_pred hh
Q 024971 242 LS 243 (260)
Q Consensus 242 l~ 243 (260)
+.
T Consensus 204 l~ 205 (210)
T COG2945 204 LE 205 (210)
T ss_pred hh
Confidence 85
No 80
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.59 E-value=1.3e-13 Score=100.72 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=58.4
Q ss_pred CccEEEEEcC--CCCCCCCCCCCCCC-------------CCCCCccHHH-HHHHHHHHHHh---hcCCceEEEEeChhhH
Q 024971 5 KSHRVYSIDL--IGYGYSDKPNPRDF-------------FDKPFYTFET-WASQLNDFCKD---VVKDQAFFICNSIGGL 65 (260)
Q Consensus 5 ~~~~v~~~D~--~G~G~S~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~lvGhS~Gg~ 65 (260)
.|+.|+++|. +|+|.+........ .....++..+ +++++..+++. ++.++++++||||||.
T Consensus 71 ~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~ 150 (275)
T TIGR02821 71 HGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGH 150 (275)
T ss_pred cCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHH
Confidence 3899999998 55554321100000 0001233333 46778777776 3556899999999999
Q ss_pred HHHHHHhhCccchhhceEeccCc
Q 024971 66 VGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 66 ~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
+++.++.++|+.+++++++++..
T Consensus 151 ~a~~~a~~~p~~~~~~~~~~~~~ 173 (275)
T TIGR02821 151 GALVIALKNPDRFKSVSAFAPIV 173 (275)
T ss_pred HHHHHHHhCcccceEEEEECCcc
Confidence 99999999999999999998874
No 81
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.58 E-value=1.6e-13 Score=99.02 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC------CceEEEEeChhhHHHHHHHhhCc-
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEP- 75 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lvGhS~Gg~~a~~~a~~~p- 75 (260)
|..++.|+++.+.||-.++...... .....++++++++...++++++-. .+++++|||.|+.++++++.+.+
T Consensus 29 l~~~~~i~~ish~Gh~~~~~~~~~~-~~~~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~ 107 (266)
T PF10230_consen 29 LNPQFEILGISHAGHSTSPSNSKFS-PNGRLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPD 107 (266)
T ss_pred CCCCCeeEEecCCCCcCCccccccc-CCCCccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccc
Confidence 4578999999999998777652100 114689999999988888877632 47999999999999999999998
Q ss_pred --cchhhceEeccCccc
Q 024971 76 --EICRGMILLNISLRM 90 (260)
Q Consensus 76 --~~v~~lvl~~~~~~~ 90 (260)
.+|.+++++-|....
T Consensus 108 ~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 108 LKFRVKKVILLFPTIED 124 (266)
T ss_pred cCCceeEEEEeCCcccc
Confidence 789999999997643
No 82
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.57 E-value=9.1e-14 Score=102.12 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=125.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHH-----HHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccc
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA-----SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI 77 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~ 77 (260)
+.+|+.|+.+++++-..+.... ++++++ +.+..+.+..+.+++.++|||.||.++..+++.++.+
T Consensus 136 ~~~g~~vfvIsw~nPd~~~~~~----------~~edYi~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k 205 (445)
T COG3243 136 LEQGLDVFVISWRNPDASLAAK----------NLEDYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAK 205 (445)
T ss_pred HHcCCceEEEeccCchHhhhhc----------cHHHHHHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhc
Confidence 4689999999999887776533 555555 4455555666788999999999999999999998887
Q ss_pred -hhhceEeccCccccccCCCCCCCcc-hhHHHhhh------hhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHH
Q 024971 78 -CRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNL------LRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELV 149 (260)
Q Consensus 78 -v~~lvl~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (260)
|++++++.+...+........+... ....+... +....+...|.......-....++...........-+..
T Consensus 206 ~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLrpndliw~~fV~nyl~ge~pl~fdll 285 (445)
T COG3243 206 RIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLPFDLL 285 (445)
T ss_pred ccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcCccccchHHHHHHhcCCCCCCchhHH
Confidence 9999999988766543332222211 11111111 111111112211111112223444444444444443332
Q ss_pred HHHhccCCccc-hHHHH-HHHHhhh---CC----CCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeC
Q 024971 150 EKILQPGLETG-AADVF-LEFICYS---GG----PLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLP 220 (260)
Q Consensus 150 ~~~~~~~~~~~-~~~~~-~~~~~~~---~~----~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
.........+. ....+ .+++... .. ....-.+.+|+||++.+.|++|.++|.+.....++.+++-...++-
T Consensus 286 yWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~ 365 (445)
T COG3243 286 YWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLS 365 (445)
T ss_pred HhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcccceEEEeecccccCCHHHHHHHHHhcCCceEEEEe
Confidence 22222111111 11111 1222111 10 1112357899999999999999999999999888888873333444
Q ss_pred CCCCCcchh
Q 024971 221 NVGHCPQVS 229 (260)
Q Consensus 221 ~~gH~~~~~ 229 (260)
++||....-
T Consensus 366 ~sGHIa~vV 374 (445)
T COG3243 366 RSGHIAGVV 374 (445)
T ss_pred cCceEEEEe
Confidence 589975543
No 83
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.56 E-value=1.6e-13 Score=110.63 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=108.5
Q ss_pred CCccEEEEEcCCCCCCCCCC-CCCCCCCCCCccHHHHHHHHHHHHHhhcC---CceEEEEeChhhHHHHHHHhhCccchh
Q 024971 4 AKSHRVYSIDLIGYGYSDKP-NPRDFFDKPFYTFETWASQLNDFCKDVVK---DQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
.+||.|+.++.||.+.-... ............++++.+.+. ++...+. +++.++|||+||.+++.++.+.| +++
T Consensus 421 ~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~ 498 (620)
T COG1506 421 SAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFK 498 (620)
T ss_pred cCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhh
Confidence 57999999999977542111 000000013456677777666 5555432 48999999999999999999988 677
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
+.+...+...... .... ....+............. ..+.
T Consensus 499 a~~~~~~~~~~~~----------------~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~----------- 537 (620)
T COG1506 499 AAVAVAGGVDWLL----------------YFGE-------------STEGLRFDPEENGGGPPE-DREK----------- 537 (620)
T ss_pred eEEeccCcchhhh----------------hccc-------------cchhhcCCHHHhCCCccc-ChHH-----------
Confidence 7777766532110 0000 000000000000000000 0000
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcch-hchhHH
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQV-SLYLSL 234 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~-~~p~~~ 234 (260)
+. ...+.....++++|+|+|||++|..++.+.+.++.+. ..+++++++|+.||.+.. ++...+
T Consensus 538 -----~~-------~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~ 605 (620)
T COG1506 538 -----YE-------DRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKV 605 (620)
T ss_pred -----HH-------hcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHH
Confidence 00 0111334678899999999999999998877765443 456799999999997665 344445
Q ss_pred HHHHHHhhhh
Q 024971 235 SSACLHTLSY 244 (260)
Q Consensus 235 ~~~i~~~l~~ 244 (260)
.+.+.+|++.
T Consensus 606 ~~~~~~~~~~ 615 (620)
T COG1506 606 LKEILDWFKR 615 (620)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 84
>PRK11460 putative hydrolase; Provisional
Probab=99.52 E-value=3e-13 Score=96.00 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=45.0
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcchhchhHHHHHHHHhh
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQVSLYLSLSSACLHTL 242 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l 242 (260)
++|+++++|++|.++|.+..+.+.+. ..++++++++++||.+..+.-+.+.+.+.+++
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999887765554 23567888999999987666666666665555
No 85
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=92.11 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHH-HHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS-QLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
++||.|..+|+||.|.|+..... ...+.+.|++. |+...++.+ ..-+.+.||||+||.+.-.+. +++ ++
T Consensus 55 ~~Gf~Vlt~dyRG~g~S~p~~~~----~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~-k~ 128 (281)
T COG4757 55 KAGFEVLTFDYRGIGQSRPASLS----GSQWRYLDWARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHP-KY 128 (281)
T ss_pred ccCceEEEEecccccCCCccccc----cCccchhhhhhcchHHHHHHHHhhCCCCceEEeeccccceeecccc-cCc-cc
Confidence 46999999999999999876632 24567777774 666666555 345899999999998766544 444 45
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHH--HHHHHhcChHHHHHHHHhccCCCCcccHH---HHHHHh
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGK--LFYKMVATSESVRNILCQCYNDTSQVTEE---LVEKIL 153 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 153 (260)
.+....+...... .+.... ..+........... .+.+. .+.. ...+..+..+-. ..+.++
T Consensus 129 ~a~~vfG~gagws-----g~m~~~--~~l~~~~l~~lv~p~lt~w~g-----~~p~---~l~G~G~d~p~~v~RdW~Rwc 193 (281)
T COG4757 129 AAFAVFGSGAGWS-----GWMGLR--ERLGAVLLWNLVGPPLTFWKG-----YMPK---DLLGLGSDLPGTVMRDWARWC 193 (281)
T ss_pred ceeeEeccccccc-----cchhhh--hcccceeeccccccchhhccc-----cCcH---hhcCCCccCcchHHHHHHHHh
Confidence 5555554443211 010000 00000000000000 00000 0000 000111111111 111111
Q ss_pred ccCCc---cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEE--EeCC----CCC
Q 024971 154 QPGLE---TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI--VLPN----VGH 224 (260)
Q Consensus 154 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~----~gH 224 (260)
+.... ......+ .+..+++++|+..+...+|+.+|+...+.+....+|+.+. .++. .||
T Consensus 194 R~p~y~fddp~~~~~------------~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH 261 (281)
T COG4757 194 RHPRYYFDDPAMRNY------------RQVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGH 261 (281)
T ss_pred cCccccccChhHhHH------------HHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccc
Confidence 11100 0000001 3455678899999999999999999998888877765443 3432 599
Q ss_pred Ccchhch-hHHHHHHHHhh
Q 024971 225 CPQVSLY-LSLSSACLHTL 242 (260)
Q Consensus 225 ~~~~~~p-~~~~~~i~~~l 242 (260)
+-..-+| |..-+...+|+
T Consensus 262 ~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 262 MGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hhhhccchHHHHHHHHHhh
Confidence 9887776 66666665554
No 86
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.50 E-value=1.6e-13 Score=104.10 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh------cCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+|+||++|++|+|.|..+. .......+++++.++++.+ +.++++||||||||.+|..++.+.|++|
T Consensus 72 ~d~nVI~VDw~g~g~s~y~~-------a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV 144 (442)
T TIGR03230 72 PSANVIVVDWLSRAQQHYPT-------SAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKV 144 (442)
T ss_pred CCCEEEEEECCCcCCCCCcc-------ccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcce
Confidence 36999999999999887654 1233466777777777765 3579999999999999999999999999
Q ss_pred hhceEeccCccc
Q 024971 79 RGMILLNISLRM 90 (260)
Q Consensus 79 ~~lvl~~~~~~~ 90 (260)
.++++++|+.+.
T Consensus 145 ~rItgLDPAgP~ 156 (442)
T TIGR03230 145 NRITGLDPAGPT 156 (442)
T ss_pred eEEEEEcCCCCc
Confidence 999999997543
No 87
>PLN00021 chlorophyllase
Probab=99.49 E-value=6.7e-13 Score=97.72 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh-------hcCCceEEEEeChhhHHHHHHHhhCcc-
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-------VVKDQAFFICNSIGGLVGLQAAVMEPE- 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lvGhS~Gg~~a~~~a~~~p~- 76 (260)
.||.|+++|++|++.+.... ...+..+..+.+.+.++. .+.++++++|||+||.+++.+|..+++
T Consensus 78 ~G~~VvapD~~g~~~~~~~~-------~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~ 150 (313)
T PLN00021 78 HGFIVVAPQLYTLAGPDGTD-------EIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAV 150 (313)
T ss_pred CCCEEEEecCCCcCCCCchh-------hHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhcccc
Confidence 58999999999975432211 111223333333332222 234689999999999999999998874
Q ss_pred ----chhhceEeccCc
Q 024971 77 ----ICRGMILLNISL 88 (260)
Q Consensus 77 ----~v~~lvl~~~~~ 88 (260)
+++++|+++|..
T Consensus 151 ~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 151 SLPLKFSALIGLDPVD 166 (313)
T ss_pred ccccceeeEEeecccc
Confidence 578899998863
No 88
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.46 E-value=5e-12 Score=103.58 Aligned_cols=78 Identities=14% Similarity=-0.051 Sum_probs=60.7
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc--------------------CCceEEEEeCh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV--------------------KDQAFFICNSI 62 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~lvGhS~ 62 (260)
+++||.|+.+|.||+|.|++... ... .+-.+|..++|+.+. ..++.++|.|+
T Consensus 276 ~~rGYaVV~~D~RGtg~SeG~~~-------~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY 347 (767)
T PRK05371 276 LPRGFAVVYVSGIGTRGSDGCPT-------TGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSY 347 (767)
T ss_pred HhCCeEEEEEcCCCCCCCCCcCc-------cCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcH
Confidence 36799999999999999998641 122 334555555555553 35899999999
Q ss_pred hhHHHHHHHhhCccchhhceEeccCc
Q 024971 63 GGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 63 Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
||.+++.+|...|+.++++|..++..
T Consensus 348 ~G~~~~~aAa~~pp~LkAIVp~a~is 373 (767)
T PRK05371 348 LGTLPNAVATTGVEGLETIIPEAAIS 373 (767)
T ss_pred HHHHHHHHHhhCCCcceEEEeeCCCC
Confidence 99999999999888899999887764
No 89
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.43 E-value=1.1e-11 Score=88.46 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCCc-cEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCC-ceEEEEeChhhHHHHHHHhhC---ccc
Q 024971 3 LAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVME---PEI 77 (260)
Q Consensus 3 L~~~-~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lvGhS~Gg~~a~~~a~~~---p~~ 77 (260)
|... +.|+.++.+|.+.... ...+++++++...+.|.....+ +++|+|||+||.+|+.+|.+- ...
T Consensus 23 l~~~~~~v~~i~~~~~~~~~~---------~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~ 93 (229)
T PF00975_consen 23 LPDDVIGVYGIEYPGRGDDEP---------PPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEAGEE 93 (229)
T ss_dssp HTTTEEEEEEECSTTSCTTSH---------EESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-S
T ss_pred CCCCeEEEEEEecCCCCCCCC---------CCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHhhhc
Confidence 4554 8999999999983333 3469999999998888877655 999999999999999999764 234
Q ss_pred hhhceEeccCc
Q 024971 78 CRGMILLNISL 88 (260)
Q Consensus 78 v~~lvl~~~~~ 88 (260)
+..++++++.+
T Consensus 94 v~~l~liD~~~ 104 (229)
T PF00975_consen 94 VSRLILIDSPP 104 (229)
T ss_dssp ESEEEEESCSS
T ss_pred cCceEEecCCC
Confidence 88999999754
No 90
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.42 E-value=1.1e-12 Score=92.67 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=89.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcc--------HHHHHHHHHHHHHhhc------CCceEEEEeChhhHHHHH
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT--------FETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQ 69 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~------~~~~~lvGhS~Gg~~a~~ 69 (260)
++||.|+++|+-+-......... ..... .+...+++.+.++.+. .+++.++|+||||.+++.
T Consensus 39 ~~Gy~v~~pD~f~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~ 114 (218)
T PF01738_consen 39 EEGYVVLAPDLFGGRGAPPSDPE----EAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALL 114 (218)
T ss_dssp HTT-EEEEE-CCCCTS--CCCHH----CHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHH
T ss_pred hcCCCEEecccccCCCCCccchh----hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhh
Confidence 36999999998654441111100 00011 2345566666666652 358999999999999999
Q ss_pred HHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHH
Q 024971 70 AAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELV 149 (260)
Q Consensus 70 ~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (260)
+|.+. +.+++.|..-|..... ..
T Consensus 115 ~a~~~-~~~~a~v~~yg~~~~~-------------------------------------------------------~~- 137 (218)
T PF01738_consen 115 LAARD-PRVDAAVSFYGGSPPP-------------------------------------------------------PP- 137 (218)
T ss_dssp HHCCT-TTSSEEEEES-SSSGG-------------------------------------------------------GH-
T ss_pred hhhhc-cccceEEEEcCCCCCC-------------------------------------------------------cc-
Confidence 99887 5688888776610000 00
Q ss_pred HHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHH----hhccCCCccEEEeCCCCCC
Q 024971 150 EKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHC 225 (260)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~----~~~~~~~~~~~~~~~~gH~ 225 (260)
.....++++|+++++|++|+.++.+..+. +.+.....++++++|++|-
T Consensus 138 ----------------------------~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~Hg 189 (218)
T PF01738_consen 138 ----------------------------LEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHG 189 (218)
T ss_dssp ----------------------------HHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TT
T ss_pred ----------------------------hhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCccc
Confidence 12345678999999999999999886444 4344567899999999996
Q ss_pred cchh-----chhHHHHHHHHhhhhcc
Q 024971 226 PQVS-----LYLSLSSACLHTLSYLH 246 (260)
Q Consensus 226 ~~~~-----~p~~~~~~i~~~l~~~~ 246 (260)
+... +++...+...+.+++++
T Consensus 190 F~~~~~~~~~~~aa~~a~~~~~~ff~ 215 (218)
T PF01738_consen 190 FANPSRPPYDPAAAEDAWQRTLAFFK 215 (218)
T ss_dssp TTSTTSTT--HHHHHHHHHHHHHHHC
T ss_pred ccCCCCcccCHHHHHHHHHHHHHHHH
Confidence 5543 23444445555455444
No 91
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.42 E-value=4.8e-12 Score=89.18 Aligned_cols=122 Identities=25% Similarity=0.276 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhh
Q 024971 36 FETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNL 110 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (260)
++..++.+.++++.. ..+++++.|.|.||++|+.++.++|+.+.++|.+++......
T Consensus 83 i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~------------------ 144 (216)
T PF02230_consen 83 IEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPES------------------ 144 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGC------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccc------------------
Confidence 344444555555543 345899999999999999999999999999999998632100
Q ss_pred hhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEE
Q 024971 111 LRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLI 190 (260)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~ 190 (260)
.. . .. ..... ++|+++
T Consensus 145 --------------------------------~~-~----------------------------~~-~~~~~--~~pi~~ 160 (216)
T PF02230_consen 145 --------------------------------EL-E----------------------------DR-PEALA--KTPILI 160 (216)
T ss_dssp --------------------------------CC-H----------------------------CC-HCCCC--TS-EEE
T ss_pred --------------------------------cc-c----------------------------cc-ccccC--CCcEEE
Confidence 00 0 00 01111 699999
Q ss_pred EecCCCCCCChHHHHH----hhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhh
Q 024971 191 AWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLS 243 (260)
Q Consensus 191 i~g~~D~~~~~~~~~~----~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~ 243 (260)
++|++|.++|.+..+. +.+...+++++.+++.||.+.. +..+.+.+||+
T Consensus 161 ~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~~----~~~~~~~~~l~ 213 (216)
T PF02230_consen 161 IHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEISP----EELRDLREFLE 213 (216)
T ss_dssp EEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS--H----HHHHHHHHHHH
T ss_pred EecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCH----HHHHHHHHHHh
Confidence 9999999999886655 4444556899999999998864 33444556664
No 92
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.41 E-value=5.3e-12 Score=100.96 Aligned_cols=79 Identities=20% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
++||.|+++|+||+|.|+... ...+ ...++|+.++++.+.. .++.++|||+||.+++.+|..+|+++
T Consensus 51 ~~Gy~vv~~D~RG~g~S~g~~-------~~~~-~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l 122 (550)
T TIGR00976 51 AQGYAVVIQDTRGRGASEGEF-------DLLG-SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPAL 122 (550)
T ss_pred hCCcEEEEEeccccccCCCce-------EecC-cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCce
Confidence 679999999999999998754 1222 4567777777776632 48999999999999999999999999
Q ss_pred hhceEeccCccc
Q 024971 79 RGMILLNISLRM 90 (260)
Q Consensus 79 ~~lvl~~~~~~~ 90 (260)
+++|..++....
T Consensus 123 ~aiv~~~~~~d~ 134 (550)
T TIGR00976 123 RAIAPQEGVWDL 134 (550)
T ss_pred eEEeecCcccch
Confidence 999998887544
No 93
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.41 E-value=5.5e-12 Score=88.63 Aligned_cols=84 Identities=10% Similarity=-0.014 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCCC-CC--CCCCccHHHHHHHHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhCccchh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRD-FF--DKPFYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
.||.|+++|.+|++.+....... .. ........++.+.+..+.+..+. ++++++|||+||.+++.++.++|+.+.
T Consensus 42 ~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~ 121 (212)
T TIGR01840 42 YGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFA 121 (212)
T ss_pred CCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhhe
Confidence 58999999999998654211000 00 00011122222222233333333 589999999999999999999999999
Q ss_pred hceEeccCc
Q 024971 80 GMILLNISL 88 (260)
Q Consensus 80 ~lvl~~~~~ 88 (260)
+++.+++..
T Consensus 122 ~~~~~~g~~ 130 (212)
T TIGR01840 122 GGASNAGLP 130 (212)
T ss_pred EEEeecCCc
Confidence 999888764
No 94
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.41 E-value=1.9e-12 Score=86.74 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHH-hhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhh
Q 024971 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA-VMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLR 112 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a-~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (260)
.+.+++.+.+.+.+.... +++++||||+|+..+++++ .....+|.|++|++|+-........+
T Consensus 37 P~~~~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~~~--------------- 100 (171)
T PF06821_consen 37 PDLDEWVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPFPP--------------- 100 (171)
T ss_dssp --HHHHHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCCTC---------------
T ss_pred CCHHHHHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccchhh---------------
Confidence 467888888888777664 5699999999999999999 77778899999999973210000000
Q ss_pred hhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEe
Q 024971 113 NTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAW 192 (260)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~ 192 (260)
.. ..........+.+|.+++.
T Consensus 101 ------------------------------~~-----------------------------~~f~~~p~~~l~~~~~via 121 (171)
T PF06821_consen 101 ------------------------------EL-----------------------------DGFTPLPRDPLPFPSIVIA 121 (171)
T ss_dssp ------------------------------GG-----------------------------CCCTTSHCCHHHCCEEEEE
T ss_pred ------------------------------hc-----------------------------cccccCcccccCCCeEEEE
Confidence 00 0000111233457779999
Q ss_pred cCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchh
Q 024971 193 GDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYL 232 (260)
Q Consensus 193 g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~ 232 (260)
+++|+++|.+.++.+++.+. ++++.++++||+.-.+.-.
T Consensus 122 S~nDp~vp~~~a~~~A~~l~-a~~~~~~~~GHf~~~~G~~ 160 (171)
T PF06821_consen 122 SDNDPYVPFERAQRLAQRLG-AELIILGGGGHFNAASGFG 160 (171)
T ss_dssp ETTBSSS-HHHHHHHHHHHT--EEEEETS-TTSSGGGTHS
T ss_pred cCCCCccCHHHHHHHHHHcC-CCeEECCCCCCcccccCCC
Confidence 99999999999999998874 7899999999998765433
No 95
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.39 E-value=3.8e-12 Score=91.04 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=46.9
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh--------cCCceEEEEeChhhHHHHHHHhhCc-
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV--------VKDQAFFICNSIGGLVGLQAAVMEP- 75 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~lvGhS~Gg~~a~~~a~~~p- 75 (260)
.+|.|+-+-++..... -...+++.-++||.++++.+ +.++++|+|||.|+.-+++|+....
T Consensus 62 ~~wsl~q~~LsSSy~G----------~G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~ 131 (303)
T PF08538_consen 62 TGWSLFQVQLSSSYSG----------WGTSSLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNP 131 (303)
T ss_dssp TT-EEEEE--GGGBTT----------S-S--HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT
T ss_pred CCeEEEEEEecCccCC----------cCcchhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCc
Confidence 4788888776531111 12336777788777777655 2458999999999999999987642
Q ss_pred ----cchhhceEeccCcc
Q 024971 76 ----EICRGMILLNISLR 89 (260)
Q Consensus 76 ----~~v~~lvl~~~~~~ 89 (260)
..|+++|+-+|...
T Consensus 132 ~~~~~~VdG~ILQApVSD 149 (303)
T PF08538_consen 132 SPSRPPVDGAILQAPVSD 149 (303)
T ss_dssp ---CCCEEEEEEEEE---
T ss_pred cccccceEEEEEeCCCCC
Confidence 56999999999754
No 96
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.36 E-value=9.8e-11 Score=86.52 Aligned_cols=192 Identities=20% Similarity=0.161 Sum_probs=97.4
Q ss_pred CCccEEEEEcCCCCCC-CCCCCCCC-----------CCC-CCCccHHHHHHHHHHHHHhh------cCCceEEEEeChhh
Q 024971 4 AKSHRVYSIDLIGYGY-SDKPNPRD-----------FFD-KPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGG 64 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~-S~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg 64 (260)
+.||.|+++|.||+|. |....... ... .+.+-+..+..|....++.+ +.+++.+.|.|+||
T Consensus 107 ~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG 186 (320)
T PF05448_consen 107 AAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGG 186 (320)
T ss_dssp HTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHH
T ss_pred cCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCch
Confidence 3689999999999993 32111000 001 12233444555655555544 23589999999999
Q ss_pred HHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcc
Q 024971 65 LVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQV 144 (260)
Q Consensus 65 ~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (260)
.+++.+|+..| +|++++...|..... ...+....... ....+..++...- .....
T Consensus 187 ~lal~~aaLd~-rv~~~~~~vP~l~d~------------~~~~~~~~~~~-----------~y~~~~~~~~~~d-~~~~~ 241 (320)
T PF05448_consen 187 GLALAAAALDP-RVKAAAADVPFLCDF------------RRALELRADEG-----------PYPEIRRYFRWRD-PHHER 241 (320)
T ss_dssp HHHHHHHHHSS-T-SEEEEESESSSSH------------HHHHHHT--ST-----------TTHHHHHHHHHHS-CTHCH
T ss_pred HHHHHHHHhCc-cccEEEecCCCccch------------hhhhhcCCccc-----------cHHHHHHHHhccC-CCccc
Confidence 99999999886 699999888864210 00000000000 0011111111000 00000
Q ss_pred cHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCC-CccEEEeCCCC
Q 024971 145 TEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVG 223 (260)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~g 223 (260)
.++. .....+ .+.....++|+||+++-.|-.|.++|+...-...+.++ ..++.+++..|
T Consensus 242 ~~~v-----------------~~~L~Y---~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~ 301 (320)
T PF05448_consen 242 EPEV-----------------FETLSY---FDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYG 301 (320)
T ss_dssp HHHH-----------------HHHHHT---T-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--
T ss_pred HHHH-----------------HHHHhh---hhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcC
Confidence 0111 111111 11133456789999999999999999999988877754 57899999999
Q ss_pred CCcchhchhHHHHHHHHhhh
Q 024971 224 HCPQVSLYLSLSSACLHTLS 243 (260)
Q Consensus 224 H~~~~~~p~~~~~~i~~~l~ 243 (260)
|....+. -.+...+|+.
T Consensus 302 He~~~~~---~~~~~~~~l~ 318 (320)
T PF05448_consen 302 HEYGPEF---QEDKQLNFLK 318 (320)
T ss_dssp SSTTHHH---HHHHHHHHHH
T ss_pred CCchhhH---HHHHHHHHHh
Confidence 9765432 1344445543
No 97
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.33 E-value=3.5e-12 Score=92.68 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=60.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh------cCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+|+|+++|++|++.+..+. ...+...+.+++..+++.+ +.+++++|||||||.+|..++.++|++|
T Consensus 65 ~~~nVi~vD~~~~~~~~y~~-------a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v 137 (275)
T cd00707 65 GDYNVIVVDWGRGANPNYPQ-------AVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKL 137 (275)
T ss_pred CCCEEEEEECccccccChHH-------HHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCcc
Confidence 47999999999984332211 2335555666666666654 3468999999999999999999999999
Q ss_pred hhceEeccCccc
Q 024971 79 RGMILLNISLRM 90 (260)
Q Consensus 79 ~~lvl~~~~~~~ 90 (260)
.++++++|+...
T Consensus 138 ~~iv~LDPa~p~ 149 (275)
T cd00707 138 GRITGLDPAGPL 149 (275)
T ss_pred ceeEEecCCccc
Confidence 999999997543
No 98
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.32 E-value=1.4e-10 Score=87.19 Aligned_cols=242 Identities=14% Similarity=0.110 Sum_probs=133.2
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCC---CCCCccHHHHHH-HHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFF---DKPFYTFETWAS-QLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~ 76 (260)
+||+|+.-+.||--.|......... .-..+++.+++. |+-+.++.. +.++++.+|||.|+.....++...|+
T Consensus 105 aGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 105 AGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred cCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccch
Confidence 6999999999998777654322211 123567777664 665555554 67899999999999999999888775
Q ss_pred ---chhhceEeccCccccccCCCC-CCCcch---hHHHh------hhhhhhhhHHHHHHHhcChH-HHHHHHH----hcc
Q 024971 77 ---ICRGMILLNISLRMLHIKKQP-WYGRPL---IRSFQ------NLLRNTAAGKLFYKMVATSE-SVRNILC----QCY 138 (260)
Q Consensus 77 ---~v~~lvl~~~~~~~~~~~~~~-~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~ 138 (260)
+|+.+++++|........... ...... ...+. .++........+....+... .....+. ...
T Consensus 185 ~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~ 264 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLV 264 (403)
T ss_pred hhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHc
Confidence 799999999987332100000 000000 00011 11111111122222222211 1111111 111
Q ss_pred CCCC-cccHHHHHHHhccCCccchHHHHHHHH--------------------hhhCCCCCCccCCCCCCCEEEEecCCCC
Q 024971 139 NDTS-QVTEELVEKILQPGLETGAADVFLEFI--------------------CYSGGPLPEELLPQVKCPVLIAWGDKDP 197 (260)
Q Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~P~l~i~g~~D~ 197 (260)
+... .........+........+......+. .+.....+...+.++++|+.+.+|++|.
T Consensus 265 G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~ 344 (403)
T KOG2624|consen 265 GWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDW 344 (403)
T ss_pred CcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcc
Confidence 1110 011111111111111122222222222 2222333455677889999999999999
Q ss_pred CCChHHHHHhhccCCCccEEE---eCCCCCCcc---hhchhHHHHHHHHhhhhcc
Q 024971 198 WEPIELGRAYGNFDSVEDFIV---LPNVGHCPQ---VSLYLSLSSACLHTLSYLH 246 (260)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~---~~~~gH~~~---~~~p~~~~~~i~~~l~~~~ 246 (260)
++.++..+.+....+++.... +++-.|+-+ .+.++++.+.|.+.++...
T Consensus 345 l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 345 LADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 999999987666655544322 788899644 3568999999988887654
No 99
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.31 E-value=1.5e-10 Score=75.18 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=95.5
Q ss_pred CCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhh
Q 024971 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLL 111 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (260)
.....++|++.+.+.+... .++++||+||+|+..+++++.+....|.|+++++|+-... +..
T Consensus 39 ~~P~~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~----------~~~------- 100 (181)
T COG3545 39 EAPVLDDWIARLEKEVNAA-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSR----------PEI------- 100 (181)
T ss_pred CCCCHHHHHHHHHHHHhcc-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccc----------ccc-------
Confidence 3457888888888888877 4679999999999999999988777899999999963110 000
Q ss_pred hhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEE
Q 024971 112 RNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIA 191 (260)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 191 (260)
...... ... .....++.-|.+++
T Consensus 101 ---------------------------------~~~~~~-----------------------tf~-~~p~~~lpfps~vv 123 (181)
T COG3545 101 ---------------------------------RPKHLM-----------------------TFD-PIPREPLPFPSVVV 123 (181)
T ss_pred ---------------------------------chhhcc-----------------------ccC-CCccccCCCceeEE
Confidence 000000 000 12233456899999
Q ss_pred ecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchh---chhHHHHHHHHhhhh
Q 024971 192 WGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVS---LYLSLSSACLHTLSY 244 (260)
Q Consensus 192 ~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~p~~~~~~i~~~l~~ 244 (260)
..++|++++.+.++.+++..+ +.++.+..+||+--.+ .-.+....+.+++..
T Consensus 124 aSrnDp~~~~~~a~~~a~~wg-s~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 124 ASRNDPYVSYEHAEDLANAWG-SALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred EecCCCCCCHHHHHHHHHhcc-HhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 999999999999999999877 5677788889975433 334445555555543
No 100
>COG0400 Predicted esterase [General function prediction only]
Probab=99.30 E-value=7.2e-11 Score=81.03 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhh
Q 024971 36 FETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRN 113 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (260)
.+.+++.+..+.++.+. ++++++|+|-||.+++.+..++|+.+++++++++.......
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~-------------------- 139 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE-------------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc--------------------
Confidence 33444445555556666 68999999999999999999999999999999987432100
Q ss_pred hhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEec
Q 024971 114 TAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWG 193 (260)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g 193 (260)
....+ -..|+++++|
T Consensus 140 ---------------------------------------------------------------~~~~~--~~~pill~hG 154 (207)
T COG0400 140 ---------------------------------------------------------------LLPDL--AGTPILLSHG 154 (207)
T ss_pred ---------------------------------------------------------------ccccc--CCCeEEEecc
Confidence 01112 2489999999
Q ss_pred CCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcchhchhHHHH
Q 024971 194 DKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQVSLYLSLSS 236 (260)
Q Consensus 194 ~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~~~p~~~~~ 236 (260)
+.|+++|.....++.+. .-+++...++ .||.+..+.-+++.+
T Consensus 155 ~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~~~~~~~ 200 (207)
T COG0400 155 TEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPPEELEAARS 200 (207)
T ss_pred CcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCHHHHHHHHH
Confidence 99999998877665543 4567888888 799887655444444
No 101
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=84.37 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
|.||++.+||+|.|+.+. ...++....|..+..++=.+|.+++++-|..||+.|+..+|..+|++|.|+-+-.+
T Consensus 189 FEVI~PSlPGygwSd~~s------k~GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~ 262 (469)
T KOG2565|consen 189 FEVIAPSLPGYGWSDAPS------KTGFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMC 262 (469)
T ss_pred EEEeccCCCCcccCcCCc------cCCccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhccc
Confidence 899999999999999988 46788899999999999999999999999999999999999999999998876555
Q ss_pred C
Q 024971 87 S 87 (260)
Q Consensus 87 ~ 87 (260)
.
T Consensus 263 ~ 263 (469)
T KOG2565|consen 263 F 263 (469)
T ss_pred c
Confidence 4
No 102
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.26 E-value=2.9e-10 Score=77.11 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.5
Q ss_pred CccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
..+.++..+.+.++++....+.+.|||.||||..|..+|.+++ +++ |+++|+..+
T Consensus 39 ~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p 93 (187)
T PF05728_consen 39 PPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRP 93 (187)
T ss_pred CcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCH
Confidence 3456667778888888887777999999999999999999886 444 999998643
No 103
>PRK10162 acetyl esterase; Provisional
Probab=99.26 E-value=2.1e-09 Score=80.27 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhC------cc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVME------PE 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~------p~ 76 (260)
.|+.|+++|+|.......+. ...+..+..+.+.+..+.++. ++++++|+|+||.+++.++.+. +.
T Consensus 111 ~g~~Vv~vdYrlape~~~p~-------~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~ 183 (318)
T PRK10162 111 SGCTVIGIDYTLSPEARFPQ-------AIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCG 183 (318)
T ss_pred cCCEEEEecCCCCCCCCCCC-------cHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCcc
Confidence 38999999999754432221 112222333334444445554 5899999999999999988653 35
Q ss_pred chhhceEeccCc
Q 024971 77 ICRGMILLNISL 88 (260)
Q Consensus 77 ~v~~lvl~~~~~ 88 (260)
++.+++++.|..
T Consensus 184 ~~~~~vl~~p~~ 195 (318)
T PRK10162 184 KVAGVLLWYGLY 195 (318)
T ss_pred ChhheEEECCcc
Confidence 689999998864
No 104
>PRK10115 protease 2; Provisional
Probab=99.24 E-value=9.5e-10 Score=89.84 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=112.5
Q ss_pred CCCccEEEEEcCCCCCCCCCCCC-CCCCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNP-RDFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+++||.|+.++.||-|.-...-. .........+++|+++.+..+++.- ..+++.+.|.|.||.++..++.++|++++
T Consensus 471 ~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~ 550 (686)
T PRK10115 471 LDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFH 550 (686)
T ss_pred HHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhhee
Confidence 46899999999999765432110 0000013357777777766666552 23589999999999999999999999999
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
++|...|.......... ........ .+ ..+++.. .++..+.+
T Consensus 551 A~v~~vp~~D~~~~~~~---------------~~~p~~~~---------~~-----~e~G~p~--~~~~~~~l------- 592 (686)
T PRK10115 551 GVIAQVPFVDVVTTMLD---------------ESIPLTTG---------EF-----EEWGNPQ--DPQYYEYM------- 592 (686)
T ss_pred EEEecCCchhHhhhccc---------------CCCCCChh---------HH-----HHhCCCC--CHHHHHHH-------
Confidence 99999887543211000 00000000 00 0011110 01111110
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCC-EEEEecCCCCCCChHHHHHhhc----cCCCccEEEe---CCCCCCcch---
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCP-VLIAWGDKDPWEPIELGRAYGN----FDSVEDFIVL---PNVGHCPQV--- 228 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~----~~~~~~~~~~---~~~gH~~~~--- 228 (260)
....+...+.+++.| +|+++|.+|..+|+.....+.. .....+++++ +++||....
T Consensus 593 -------------~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~ 659 (686)
T PRK10115 593 -------------KSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRF 659 (686)
T ss_pred -------------HHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHH
Confidence 011223456677899 5677999999998876665443 3344677777 899998432
Q ss_pred hchhHHHHHHHHhhhhccccc
Q 024971 229 SLYLSLSSACLHTLSYLHTCR 249 (260)
Q Consensus 229 ~~p~~~~~~i~~~l~~~~~~~ 249 (260)
+.-++.+..+.-.+..++.|.
T Consensus 660 ~~~~~~A~~~aFl~~~~~~~~ 680 (686)
T PRK10115 660 KSYEGVAMEYAFLIALAQGTL 680 (686)
T ss_pred HHHHHHHHHHHHHHHHhCCcC
Confidence 233344444443445555553
No 105
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=3.4e-10 Score=78.68 Aligned_cols=190 Identities=21% Similarity=0.191 Sum_probs=108.8
Q ss_pred CCccEEEEEcCCCCCCCCCC---CCCC---CC-------C-CCCccHHHHHHHHHHHHHhh------cCCceEEEEeChh
Q 024971 4 AKSHRVYSIDLIGYGYSDKP---NPRD---FF-------D-KPFYTFETWASQLNDFCKDV------VKDQAFFICNSIG 63 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~---~~~~---~~-------~-~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~G 63 (260)
..||.|+..|-||.|.|... .+.. .+ + .+.+-+.....|+..+++.+ ..+++.+.|.|.|
T Consensus 107 ~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqG 186 (321)
T COG3458 107 VAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQG 186 (321)
T ss_pred ccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccC
Confidence 46999999999999988431 1111 00 1 23333444455555555444 3468999999999
Q ss_pred hHHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCc
Q 024971 64 GLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQ 143 (260)
Q Consensus 64 g~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (260)
|.+++.+++..| ++++++.+-|...-. .+ .+ .+.... .-..+..+++.. ..
T Consensus 187 Gglalaaaal~~-rik~~~~~~Pfl~df--------~r----~i-~~~~~~-----------~ydei~~y~k~h----~~ 237 (321)
T COG3458 187 GGLALAAAALDP-RIKAVVADYPFLSDF--------PR----AI-ELATEG-----------PYDEIQTYFKRH----DP 237 (321)
T ss_pred chhhhhhhhcCh-hhhcccccccccccc--------hh----he-eecccC-----------cHHHHHHHHHhc----Cc
Confidence 999999998876 799999888764221 00 00 000000 000111111110 00
Q ss_pred ccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCC-ccEEEeCCC
Q 024971 144 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNV 222 (260)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~ 222 (260)
...+..+.+ .+. +......++++|+|+..|-.|.++|+...-...+.++. .++.+++.-
T Consensus 238 ~e~~v~~TL-----------------~yf---D~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~ 297 (321)
T COG3458 238 KEAEVFETL-----------------SYF---DIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYF 297 (321)
T ss_pred hHHHHHHHH-----------------hhh---hhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccCCceEEEeecc
Confidence 001111110 110 11234467899999999999999999988887777554 567778876
Q ss_pred CCCcchhchhHHHHHHHHhhhhc
Q 024971 223 GHCPQVSLYLSLSSACLHTLSYL 245 (260)
Q Consensus 223 gH~~~~~~p~~~~~~i~~~l~~~ 245 (260)
+|.-. |.-..+.+..|++.+
T Consensus 298 aHe~~---p~~~~~~~~~~l~~l 317 (321)
T COG3458 298 AHEGG---PGFQSRQQVHFLKIL 317 (321)
T ss_pred ccccC---cchhHHHHHHHHHhh
Confidence 67543 344445555666544
No 106
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.23 E-value=3.4e-10 Score=100.06 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=65.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC-CceEEEEeChhhHHHHHHHhh---Cccc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-DQAFFICNSIGGLVGLQAAVM---EPEI 77 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvGhS~Gg~~a~~~a~~---~p~~ 77 (260)
.|+.+++|+++|+||+|.+.. ..++++++++++.+.++.+.. .+++++||||||.+|..+|.+ .+++
T Consensus 1090 ~l~~~~~v~~~~~~g~~~~~~---------~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~ 1160 (1296)
T PRK10252 1090 YLDPQWSIYGIQSPRPDGPMQ---------TATSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQGIAARLRARGEE 1160 (1296)
T ss_pred hcCCCCcEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHHHHHHHHHcCCc
Confidence 467889999999999986632 357999999999999988754 489999999999999999985 4678
Q ss_pred hhhceEeccCc
Q 024971 78 CRGMILLNISL 88 (260)
Q Consensus 78 v~~lvl~~~~~ 88 (260)
+..++++++..
T Consensus 1161 v~~l~l~~~~~ 1171 (1296)
T PRK10252 1161 VAFLGLLDTWP 1171 (1296)
T ss_pred eeEEEEecCCC
Confidence 99999998743
No 107
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.21 E-value=3.5e-09 Score=82.49 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=60.1
Q ss_pred CCccEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------cCCceEEEEeChhhHHHHHHHhhC-
Q 024971 4 AKSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVME- 74 (260)
Q Consensus 4 ~~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvGhS~Gg~~a~~~a~~~- 74 (260)
.+...++.+|.| |+|.|..... ....+.++.++|+.++++.+ +..+++|+|||+||..+..+|.+.
T Consensus 119 ~~~~~~l~iDqP~G~G~S~~~~~-----~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~ 193 (462)
T PTZ00472 119 NNEAYVIYVDQPAGVGFSYADKA-----DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRIN 193 (462)
T ss_pred ccccCeEEEeCCCCcCcccCCCC-----CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHH
Confidence 355789999986 9998876432 12345678888888888754 347899999999999998887652
Q ss_pred ---------ccchhhceEeccCccc
Q 024971 75 ---------PEICRGMILLNISLRM 90 (260)
Q Consensus 75 ---------p~~v~~lvl~~~~~~~ 90 (260)
+-.++|+++-++...+
T Consensus 194 ~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 194 MGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred hhccccCCceeeeEEEEEeccccCh
Confidence 1137888888887644
No 108
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.20 E-value=4.5e-11 Score=87.34 Aligned_cols=80 Identities=16% Similarity=0.045 Sum_probs=58.0
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
++||.|+..|.||.|.|++... .. ...-++|..++|+-+.. .+|-++|.|++|..++.+|...|..+
T Consensus 55 ~~GY~vV~~D~RG~g~S~G~~~-------~~-~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~L 126 (272)
T PF02129_consen 55 ERGYAVVVQDVRGTGGSEGEFD-------PM-SPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHL 126 (272)
T ss_dssp HTT-EEEEEE-TTSTTS-S-B--------TT-SHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTE
T ss_pred hCCCEEEEECCcccccCCCccc-------cC-ChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCc
Confidence 5799999999999999998652 11 45566666666666522 37999999999999999999888889
Q ss_pred hhceEeccCcccc
Q 024971 79 RGMILLNISLRML 91 (260)
Q Consensus 79 ~~lvl~~~~~~~~ 91 (260)
++++...+.....
T Consensus 127 kAi~p~~~~~d~~ 139 (272)
T PF02129_consen 127 KAIVPQSGWSDLY 139 (272)
T ss_dssp EEEEEESE-SBTC
T ss_pred eEEEecccCCccc
Confidence 9999888765443
No 109
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.19 E-value=8.2e-10 Score=78.30 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCccEEEEEcCCCC-CCCCCCCCC--CCCC--CCCccHHHHHHHHHHHHHhhc------CCceEEEEeChhhHHHHHHHh
Q 024971 4 AKSHRVYSIDLIGY-GYSDKPNPR--DFFD--KPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
..||.|+++|+-+. |.+...... .... ....+..+...|+.+.++.+. .+++.++|.||||.+++.++.
T Consensus 52 ~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~ 131 (236)
T COG0412 52 KAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAAT 131 (236)
T ss_pred hCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhc
Confidence 36999999998874 333222200 0000 011233677778887777773 356999999999999999999
Q ss_pred hCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHH
Q 024971 73 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKI 152 (260)
Q Consensus 73 ~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (260)
+.| .|++.+..-+.....
T Consensus 132 ~~~-~v~a~v~fyg~~~~~------------------------------------------------------------- 149 (236)
T COG0412 132 RAP-EVKAAVAFYGGLIAD------------------------------------------------------------- 149 (236)
T ss_pred ccC-CccEEEEecCCCCCC-------------------------------------------------------------
Confidence 887 688887776642110
Q ss_pred hccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcch
Q 024971 153 LQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQV 228 (260)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~ 228 (260)
......++++|+++..|+.|..+|......+.+. ....++.+++++.|-++.
T Consensus 150 ------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~ 205 (236)
T COG0412 150 ------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFAN 205 (236)
T ss_pred ------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccccc
Confidence 0112457889999999999999998766655443 235778999998896653
No 110
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.19 E-value=5.2e-11 Score=83.24 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 39 WASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 39 ~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
+.+...++++.. ..+++.|+|.|.||-+|+.+|..+| .|+++|.++|....
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 444555555554 2358999999999999999999999 69999999987543
No 111
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=99.19 E-value=1e-08 Score=78.07 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=49.0
Q ss_pred CCccHHHHHHHHHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCcccc
Q 024971 32 PFYTFETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~ 91 (260)
...++++.......+++.. +..+.+++|.|.||..++.+|+.+|+.+.-+|+-+.+....
T Consensus 114 pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 114 PGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 4568888888777777665 23478999999999999999999999988888888776554
No 112
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.17 E-value=1.3e-09 Score=79.43 Aligned_cols=214 Identities=12% Similarity=0.061 Sum_probs=111.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHH-------H---HHHHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA-------S---QLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
|.+|+..+.+..|-||.-.+...... ...+..|+. . .+...++..|..++.+.|.||||.+|...|.
T Consensus 118 l~~gi~s~~le~Pyyg~RkP~~Q~~s---~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~ 194 (348)
T PF09752_consen 118 LKEGIASLILENPYYGQRKPKDQRRS---SLRNVSDLFVMGRATILESRALLHWLEREGYGPLGLTGISMGGHMAALAAS 194 (348)
T ss_pred HHcCcceEEEecccccccChhHhhcc---cccchhHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEechhHhhHHhhhh
Confidence 45688999999999987765442111 112222222 1 2233344447789999999999999999999
Q ss_pred hCccchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHH
Q 024971 73 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKI 152 (260)
Q Consensus 73 ~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (260)
..|..+..+-.+++..... .+. ... +........+..... ...+.............. .....
T Consensus 195 ~~p~pv~~vp~ls~~sAs~------vFt----~Gv---ls~~i~W~~L~~q~~-~~~~~~~~~~~~~~~~~~---~~~~~ 257 (348)
T PF09752_consen 195 NWPRPVALVPCLSWSSASV------VFT----EGV---LSNSINWDALEKQFE-DTVYEEEISDIPAQNKSL---PLDSM 257 (348)
T ss_pred cCCCceeEEEeecccCCCc------chh----hhh---hhcCCCHHHHHHHhc-ccchhhhhcccccCcccc---cchhh
Confidence 9998766555555542210 000 000 000000000000000 000000000000000000 00000
Q ss_pred hccCCccchHHHHHHHHhhhCCCCCCccCCCC-----CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCC-c
Q 024971 153 LQPGLETGAADVFLEFICYSGGPLPEELLPQV-----KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-P 226 (260)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~ 226 (260)
................+.. ...+.+. .-.+.++.+++|.++|......+.+..|++++..+++ ||. .
T Consensus 258 ~~~~~~~Ea~~~m~~~md~------~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GHVsA 330 (348)
T PF09752_consen 258 EERRRDREALRFMRGVMDS------FTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GHVSA 330 (348)
T ss_pred ccccchHHHHHHHHHHHHh------hccccccCCCCCCCcEEEEEecCceEechhhcchHHHhCCCCeEEEecC-CcEEE
Confidence 0000001111111111111 1122222 2448889999999999988889999999999999996 995 5
Q ss_pred chhchhHHHHHHHHhhh
Q 024971 227 QVSLYLSLSSACLHTLS 243 (260)
Q Consensus 227 ~~~~p~~~~~~i~~~l~ 243 (260)
++-+.+.+.+.|.+-++
T Consensus 331 ~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 331 YLLHQEAFRQAIYDAFE 347 (348)
T ss_pred eeechHHHHHHHHHHhh
Confidence 56677888888887654
No 113
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.16 E-value=1.8e-10 Score=77.69 Aligned_cols=135 Identities=14% Similarity=0.059 Sum_probs=86.7
Q ss_pred CccEEEEEcCC-CCCCCCCCCCCCCC-CCCCccHHHHHHHHHHHHHhh---c-CCceEEEEeChhhHHHHHHHhhCccch
Q 024971 5 KSHRVYSIDLI-GYGYSDKPNPRDFF-DKPFYTFETWASQLNDFCKDV---V-KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~-G~G~S~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.||.|+.+|+- |--.|......... -....+....-.++..+++.+ + .+++-++|.+|||.++..+....| .+
T Consensus 66 ~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~-~f 144 (242)
T KOG3043|consen 66 NGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP-EF 144 (242)
T ss_pred CCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccch-hh
Confidence 59999999964 41111110000000 001223333334444444444 4 568999999999999999888887 57
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCc
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLE 158 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
.+.+..-|....
T Consensus 145 ~a~v~~hps~~d-------------------------------------------------------------------- 156 (242)
T KOG3043|consen 145 DAGVSFHPSFVD-------------------------------------------------------------------- 156 (242)
T ss_pred eeeeEecCCcCC--------------------------------------------------------------------
Confidence 777766653200
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccC---CC--ccEEEeCCCCCCcc
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD---SV--EDFIVLPNVGHCPQ 227 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~--~~~~~~~~~gH~~~ 227 (260)
.+....+++|++++.|+.|.++|++....+.+.+ +. .++++++|.+|-.+
T Consensus 157 -------------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~ 211 (242)
T KOG3043|consen 157 -------------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFV 211 (242)
T ss_pred -------------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhh
Confidence 2334567799999999999999998877766553 22 46899999999554
No 114
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.15 E-value=6.9e-09 Score=66.36 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCccEEEEEcCCCCCCC-----CCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 4 AKSHRVYSIDLIGYGYS-----DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+|+.|..+++|-.-.. .+++ ....-...+...+.++...+...+.++-|+||||-++...+..-...|
T Consensus 41 ~~G~~vaRfefpYma~Rrtg~rkPp~------~~~t~~~~~~~~~aql~~~l~~gpLi~GGkSmGGR~aSmvade~~A~i 114 (213)
T COG3571 41 RRGWLVARFEFPYMAARRTGRRKPPP------GSGTLNPEYIVAIAQLRAGLAEGPLIIGGKSMGGRVASMVADELQAPI 114 (213)
T ss_pred hCceeEEEeecchhhhccccCCCCcC------ccccCCHHHHHHHHHHHhcccCCceeeccccccchHHHHHHHhhcCCc
Confidence 36889999987754322 2222 233344567777778888877779999999999999999987755558
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCc
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLE 158 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
+++++++-+..++.. ++..
T Consensus 115 ~~L~clgYPfhppGK---------------------------------Pe~~---------------------------- 133 (213)
T COG3571 115 DGLVCLGYPFHPPGK---------------------------------PEQL---------------------------- 133 (213)
T ss_pred ceEEEecCccCCCCC---------------------------------cccc----------------------------
Confidence 999988755322100 0000
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcc----------h
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ----------V 228 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~----------~ 228 (260)
..+.+..+++|+++.+|+.|.+-..+....+. ..+..++++++++.|.+- .
T Consensus 134 ------------------Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y~-ls~~iev~wl~~adHDLkp~k~vsgls~~ 194 (213)
T COG3571 134 ------------------RTEHLTGLKTPTLITQGTRDEFGTRDEVAGYA-LSDPIEVVWLEDADHDLKPRKLVSGLSTA 194 (213)
T ss_pred ------------------hhhhccCCCCCeEEeecccccccCHHHHHhhh-cCCceEEEEeccCccccccccccccccHH
Confidence 03467788999999999999988766553322 245578999999999542 2
Q ss_pred hchhHHHHHHHHhhhhc
Q 024971 229 SLYLSLSSACLHTLSYL 245 (260)
Q Consensus 229 ~~p~~~~~~i~~~l~~~ 245 (260)
++-...++.|..|.+.+
T Consensus 195 ~hL~~~A~~va~~~~~l 211 (213)
T COG3571 195 DHLKTLAEQVAGWARRL 211 (213)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 23445667777777654
No 115
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.8e-09 Score=74.06 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=126.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCC--CCCCccHHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCc--cch
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFF--DKPFYTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEP--EIC 78 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p--~~v 78 (260)
+.+.++.+-..||-.-......+.. ....++++++++.=.++++..- ..+++++|||-|+++.+.+..... -.|
T Consensus 58 ~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~v 137 (301)
T KOG3975|consen 58 DRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSV 137 (301)
T ss_pred cccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhcccccce
Confidence 4466888888888654311110000 1357899999999899998873 458999999999999999886422 247
Q ss_pred hhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhcc---
Q 024971 79 RGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQP--- 155 (260)
Q Consensus 79 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (260)
.+++++-|.......+...+........+.......... -....+...+.++.+..........++.......
T Consensus 138 qKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt~yi----~~~~lp~~ir~~Li~~~l~~~n~p~e~l~tal~l~h~ 213 (301)
T KOG3975|consen 138 QKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLTSYI----YWILLPGFIRFILIKFMLCGSNGPQEFLSTALFLTHP 213 (301)
T ss_pred EEEEEecchHHHHhcCCCceEeeeeeeeehhhhheeeee----eeecChHHHHHHHHHHhcccCCCcHHHHhhHHHhhcH
Confidence 888888877543332222222222211111111000000 0011223333333333322222233332111100
Q ss_pred CCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEe-CCCCCCcchhchhHH
Q 024971 156 GLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVL-PNVGHCPQVSLYLSL 234 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~gH~~~~~~p~~~ 234 (260)
...........+-+..... ...+..++-.+-+.+.+|..|.++|.+....+.+..|..++.+- ++.-|.+...+.+.+
T Consensus 214 ~v~rn~v~la~qEm~eV~~-~d~e~~een~d~l~Fyygt~DgW~p~~~~d~~kdd~~eed~~Ldedki~HAFV~~~~q~m 292 (301)
T KOG3975|consen 214 QVVRNSVGLAAQEMEEVTT-RDIEYCEENLDSLWFYYGTNDGWVPSHYYDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYM 292 (301)
T ss_pred HHHHHHhhhchHHHHHHHH-hHHHHHHhcCcEEEEEccCCCCCcchHHHHHHhhhcchhceeeccccCCcceeecccHHH
Confidence 0000000000000000000 00223344457789999999999999999999998886554432 678998888888999
Q ss_pred HHHHHHhh
Q 024971 235 SSACLHTL 242 (260)
Q Consensus 235 ~~~i~~~l 242 (260)
++.+.+.+
T Consensus 293 a~~v~d~~ 300 (301)
T KOG3975|consen 293 ANAVFDMI 300 (301)
T ss_pred HHHHHHhh
Confidence 88887765
No 116
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=99.06 E-value=1.2e-08 Score=71.75 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh-hcCCceEEEEeChhhHHHHHHHhh---Cccc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-VVKDQAFFICNSIGGLVGLQAAVM---EPEI 77 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~~a~~~a~~---~p~~ 77 (260)
.|...+.|+++|.+|+|.+.... .+++.+++.+...+.. ....+++++|||+||.++..++.+ .++.
T Consensus 21 ~l~~~~~v~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~ 91 (212)
T smart00824 21 ALRGRRDVSALPLPGFGPGEPLP---------ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARLEARGIP 91 (212)
T ss_pred hcCCCccEEEecCCCCCCCCCCC---------CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHHHhCCCC
Confidence 35667899999999998765533 3677777766554443 345689999999999999988876 3456
Q ss_pred hhhceEeccCc
Q 024971 78 CRGMILLNISL 88 (260)
Q Consensus 78 v~~lvl~~~~~ 88 (260)
+.+++++++..
T Consensus 92 ~~~l~~~~~~~ 102 (212)
T smart00824 92 PAAVVLLDTYP 102 (212)
T ss_pred CcEEEEEccCC
Confidence 88898887653
No 117
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.05 E-value=1.9e-09 Score=71.88 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc---
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE--- 76 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~--- 76 (260)
++|+.|+.+|-+-+=.+.+ +.++.+.|+..+++++ +.++++|+|+|+|+-+.-....+.|.
T Consensus 27 ~~G~~VvGvdsl~Yfw~~r------------tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r 94 (192)
T PF06057_consen 27 KQGVPVVGVDSLRYFWSER------------TPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALR 94 (192)
T ss_pred HCCCeEEEechHHHHhhhC------------CHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHH
Confidence 4689999999776665544 4566777777777665 66799999999999888777776663
Q ss_pred -chhhceEeccCc
Q 024971 77 -ICRGMILLNISL 88 (260)
Q Consensus 77 -~v~~lvl~~~~~ 88 (260)
+|..+++++|..
T Consensus 95 ~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 95 ARVAQVVLLSPST 107 (192)
T ss_pred hheeEEEEeccCC
Confidence 688999999864
No 118
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.8e-09 Score=71.91 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=93.4
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHH----HHHHHhhc-CCceEEEEeChhhHHHHHHHhh-Cc
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQL----NDFCKDVV-KDQAFFICNSIGGLVGLQAAVM-EP 75 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~-~p 75 (260)
++..||+|.+++ ++.+... .++++...++ .-+++... .+.+.+-|||.|+.+|+.+..+ +.
T Consensus 93 a~~~gY~vasvg---Y~l~~q~----------htL~qt~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r~ 159 (270)
T KOG4627|consen 93 AVRRGYRVASVG---YNLCPQV----------HTLEQTMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQRS 159 (270)
T ss_pred hhhcCeEEEEec---cCcCccc----------ccHHHHHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhcC
Confidence 356789998874 5555432 2444444444 44444443 3456666899999999987765 44
Q ss_pred cchhhceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhcc
Q 024971 76 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQP 155 (260)
Q Consensus 76 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (260)
.+|.+++++++..... .+. +.+ +...-....+..+..
T Consensus 160 prI~gl~l~~GvY~l~--------------EL~-----------------~te---------~g~dlgLt~~~ae~~--- 196 (270)
T KOG4627|consen 160 PRIWGLILLCGVYDLR--------------ELS-----------------NTE---------SGNDLGLTERNAESV--- 196 (270)
T ss_pred chHHHHHHHhhHhhHH--------------HHh-----------------CCc---------cccccCcccchhhhc---
Confidence 5799999998864211 000 000 000000111110000
Q ss_pred CCccchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhc
Q 024971 156 GLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSL 230 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 230 (260)
..+ ...+..+++|+|++.|++|.-.-.+..+.+......+++..+++.+|+-..++
T Consensus 197 ------------------Scd-l~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I~~~ 252 (270)
T KOG4627|consen 197 ------------------SCD-LWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDIIEE 252 (270)
T ss_pred ------------------Ccc-HHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhHHHH
Confidence 000 23466788999999999997555566777888777799999999999876654
No 119
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.00 E-value=5e-09 Score=73.83 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh-----hcCCceEEEEeChhhHHHHHHHhhCcc---
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-----VVKDQAFFICNSIGGLVGLQAAVMEPE--- 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lvGhS~Gg~~a~~~a~~~p~--- 76 (260)
.|+.|+.+|+|=..... ....+++..+.+.-++++ .+.++++++|+|.||.+++.++.+..+
T Consensus 28 ~g~~v~~~~Yrl~p~~~----------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~ 97 (211)
T PF07859_consen 28 RGFVVVSIDYRLAPEAP----------FPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGL 97 (211)
T ss_dssp HTSEEEEEE---TTTSS----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTT
T ss_pred ccEEEEEeecccccccc----------ccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcc
Confidence 58999999999432111 122444444444455555 345689999999999999999976443
Q ss_pred -chhhceEeccCc
Q 024971 77 -ICRGMILLNISL 88 (260)
Q Consensus 77 -~v~~lvl~~~~~ 88 (260)
.++++++++|..
T Consensus 98 ~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 98 PKPKGIILISPWT 110 (211)
T ss_dssp CHESEEEEESCHS
T ss_pred cchhhhhcccccc
Confidence 388999999853
No 120
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.00 E-value=4.1e-08 Score=72.08 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC---CceEEEEeChhhHHHHHHHhhC----
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK---DQAFFICNSIGGLVGLQAAVME---- 74 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lvGhS~Gg~~a~~~a~~~---- 74 (260)
.|++||.|+++|+.|.|..-.... ...++.-|.++...++....+. .++.++|||-||.-++..+...
T Consensus 22 ~L~~GyaVv~pDY~Glg~~y~~~~-----~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~~YA 96 (290)
T PF03583_consen 22 WLARGYAVVAPDYEGLGTPYLNGR-----SEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAPSYA 96 (290)
T ss_pred HHHCCCEEEecCCCCCCCcccCcH-----hHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhHHhC
Confidence 478999999999999998211110 1223333333333333333332 4799999999999887766432
Q ss_pred ccc---hhhceEeccCcc
Q 024971 75 PEI---CRGMILLNISLR 89 (260)
Q Consensus 75 p~~---v~~lvl~~~~~~ 89 (260)
||. +.+.+..+++..
T Consensus 97 peL~~~l~Gaa~gg~~~d 114 (290)
T PF03583_consen 97 PELNRDLVGAAAGGPPAD 114 (290)
T ss_pred cccccceeEEeccCCccC
Confidence 443 566666666543
No 121
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.00 E-value=4.3e-10 Score=86.23 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccc----hhh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI----CRG 80 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~----v~~ 80 (260)
.|| +...|++|+|.+.+... .....++++.+.+.++.+..+.++++|+||||||.++..++..+|+. |++
T Consensus 120 ~GY-~~~~dL~g~gYDwR~~~-----~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~ 193 (440)
T PLN02733 120 WGY-KEGKTLFGFGYDFRQSN-----RLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNS 193 (440)
T ss_pred cCC-ccCCCcccCCCCccccc-----cHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhcc
Confidence 355 44889999999876541 01223455555555566666778999999999999999999988864 788
Q ss_pred ceEeccCccc
Q 024971 81 MILLNISLRM 90 (260)
Q Consensus 81 lvl~~~~~~~ 90 (260)
+|.++++...
T Consensus 194 ~I~la~P~~G 203 (440)
T PLN02733 194 WIAIAAPFQG 203 (440)
T ss_pred EEEECCCCCC
Confidence 8899887543
No 122
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.96 E-value=7.3e-09 Score=73.77 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc-----chhhceEeccCccccccCCCCCCCcchh
Q 024971 34 YTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE-----ICRGMILLNISLRMLHIKKQPWYGRPLI 104 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~-----~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 104 (260)
.+....+..+..++..| +++++.+|||||||..++.++..+.. ++.++|.++++...........
T Consensus 80 ~~~~~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~------ 153 (255)
T PF06028_consen 80 ANYKKQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQ------ 153 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-T------
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccc------
Confidence 46778888888777776 67899999999999999999877532 4899999998764421111000
Q ss_pred HHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCC
Q 024971 105 RSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQV 184 (260)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 184 (260)
....+.. .. .......+..+.... ...++ -
T Consensus 154 -~~~~~~~------------------------------------------~g-p~~~~~~y~~l~~~~-----~~~~p-~ 183 (255)
T PF06028_consen 154 -NQNDLNK------------------------------------------NG-PKSMTPMYQDLLKNR-----RKNFP-K 183 (255)
T ss_dssp -TTT-CST------------------------------------------T--BSS--HHHHHHHHTH-----GGGST-T
T ss_pred -hhhhhcc------------------------------------------cC-CcccCHHHHHHHHHH-----HhhCC-C
Confidence 0000000 00 000011111111110 01122 2
Q ss_pred CCCEEEEecC------CCCCCChHHHHHhhccCCC----ccEEEeC--CCCCCcchhchhHHHHHHHHhh
Q 024971 185 KCPVLIAWGD------KDPWEPIELGRAYGNFDSV----EDFIVLP--NVGHCPQVSLYLSLSSACLHTL 242 (260)
Q Consensus 185 ~~P~l~i~g~------~D~~~~~~~~~~~~~~~~~----~~~~~~~--~~gH~~~~~~p~~~~~~i~~~l 242 (260)
++.+|-|.|. .|..+|...++.+...+.+ -+..++. ++.|.-..|++ +|.+.|.+||
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 5789999998 7889998877665544332 3444554 46899888875 6778888887
No 123
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.96 E-value=3.1e-09 Score=72.94 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=80.7
Q ss_pred CCccEEEEEcCCCC-CCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 4 AKSHRVYSIDLIGY-GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+.||+|+.+|.-.| |.|++.. ..+++....+++..+++.+ |..++-|+.-|..|-+|+..|.+. .+.
T Consensus 55 ~NGFhViRyDsl~HvGlSsG~I-------~eftms~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i--~ls 125 (294)
T PF02273_consen 55 ANGFHVIRYDSLNHVGLSSGDI-------NEFTMSIGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI--NLS 125 (294)
T ss_dssp TTT--EEEE---B--------------------HHHHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----S
T ss_pred hCCeEEEeccccccccCCCCCh-------hhcchHHhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc--Ccc
Confidence 57999999999988 9998876 6789999999988877776 667899999999999999999854 255
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCccc-HHHHHHHhccCCc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVT-EELVEKILQPGLE 158 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (260)
-+|..-+.... ..-+...+....+... ...+..- -.+. ..... +.+..........
T Consensus 126 fLitaVGVVnl-------------r~TLe~al~~Dyl~~~-------i~~lp~d--ldfe-Gh~l~~~vFv~dc~e~~w~ 182 (294)
T PF02273_consen 126 FLITAVGVVNL-------------RDTLEKALGYDYLQLP-------IEQLPED--LDFE-GHNLGAEVFVTDCFEHGWD 182 (294)
T ss_dssp EEEEES--S-H-------------HHHHHHHHSS-GGGS--------GGG--SE--EEET-TEEEEHHHHHHHHHHTT-S
T ss_pred eEEEEeeeeeH-------------HHHHHHHhccchhhcc-------hhhCCCc--cccc-ccccchHHHHHHHHHcCCc
Confidence 55555443211 1111111111000000 0000000 0000 00011 1111111111000
Q ss_pred cchHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHHhhcc--CCCccEEEeCCCCCCcc
Q 024971 159 TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~ 227 (260)
.........+.+.+|++.+.+++|.++......++... .+.+++..++|++|-+.
T Consensus 183 --------------~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 183 --------------DLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG 239 (294)
T ss_dssp --------------SHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT
T ss_pred --------------cchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhh
Confidence 00001345677899999999999999998888887664 45578889999999865
No 124
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.90 E-value=6.6e-09 Score=84.52 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCC-----CCCC-----------CccHHHHHHHHHHHHHhhc----------------C
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDF-----FDKP-----------FYTFETWASQLNDFCKDVV----------------K 52 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~ 52 (260)
+||+|+++|+||||.|........ .... ..++++.+.|+..+...++ .
T Consensus 475 ~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~ 554 (792)
T TIGR03502 475 AGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDG 554 (792)
T ss_pred CCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 689999999999999955311000 0001 1278999999998888876 2
Q ss_pred CceEEEEeChhhHHHHHHHhh
Q 024971 53 DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
.+++++||||||.++..++..
T Consensus 555 ~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 555 SKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CcEEEEecCHHHHHHHHHHHh
Confidence 489999999999999999875
No 125
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.8e-08 Score=79.32 Aligned_cols=181 Identities=13% Similarity=0.023 Sum_probs=110.4
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCC-CCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccch-h
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRD-FFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEIC-R 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v-~ 79 (260)
..|+.|+.+|.||.|......... ...-+....+|+...+..+++.. +.+++.++|+|.||.+++.++...|+.+ +
T Consensus 556 ~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fk 635 (755)
T KOG2100|consen 556 SRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFK 635 (755)
T ss_pred cCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEE
Confidence 468999999999998765432100 00023456777777777777665 3458999999999999999999998554 5
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
..+.++|......... ...... ++........ +
T Consensus 636 cgvavaPVtd~~~yds------~~tery------------------------------mg~p~~~~~~----y------- 668 (755)
T KOG2100|consen 636 CGVAVAPVTDWLYYDS------TYTERY------------------------------MGLPSENDKG----Y------- 668 (755)
T ss_pred EEEEecceeeeeeecc------cccHhh------------------------------cCCCccccch----h-------
Confidence 5599999754320000 000000 0000000000 0
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCCE-EEEecCCCCCCChHHHHHhh----cc-CCCccEEEeCCCCCCcchhc-hh
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCPV-LIAWGDKDPWEPIELGRAYG----NF-DSVEDFIVLPNVGHCPQVSL-YL 232 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~-l~i~g~~D~~~~~~~~~~~~----~~-~~~~~~~~~~~~gH~~~~~~-p~ 232 (260)
.. ......+..++.|. |++||+.|..++.+....+. .. .+ .++.++|+.+|.+..-. -.
T Consensus 669 ------~e-------~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~-~~~~vypde~H~is~~~~~~ 734 (755)
T KOG2100|consen 669 ------EE-------SSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVP-FRLLVYPDENHGISYVEVIS 734 (755)
T ss_pred ------hh-------ccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCc-eEEEEeCCCCcccccccchH
Confidence 00 00123344555555 99999999999877655544 33 33 78999999999877543 35
Q ss_pred HHHHHHHHhhhhc
Q 024971 233 SLSSACLHTLSYL 245 (260)
Q Consensus 233 ~~~~~i~~~l~~~ 245 (260)
.+...+..|+..+
T Consensus 735 ~~~~~~~~~~~~~ 747 (755)
T KOG2100|consen 735 HLYEKLDRFLRDC 747 (755)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777643
No 126
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.79 E-value=9.3e-08 Score=67.62 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh-h------cCCceEEEEeChhhHHHHHHHhhC--
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-V------VKDQAFFICNSIGGLVGLQAAVME-- 74 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~lvGhS~Gg~~a~~~a~~~-- 74 (260)
+.||-|+++|+...+...... +...+.+.++.+.+=++. + +..++.|.|||-||-+|..++..+
T Consensus 42 ShGyIVV~~d~~~~~~~~~~~-------~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~ 114 (259)
T PF12740_consen 42 SHGYIVVAPDLYSIGGPDDTD-------EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNAS 114 (259)
T ss_pred hCceEEEEecccccCCCCcch-------hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcc
Confidence 358999999977654422211 222334444433332221 1 345899999999999999999887
Q ss_pred ---ccchhhceEeccCc
Q 024971 75 ---PEICRGMILLNISL 88 (260)
Q Consensus 75 ---p~~v~~lvl~~~~~ 88 (260)
+.+++++++++|.-
T Consensus 115 ~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 115 SSLDLRFSALILLDPVD 131 (259)
T ss_pred cccccceeEEEEecccc
Confidence 55899999999973
No 127
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=3.5e-07 Score=65.17 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=63.2
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc-CCceEEEEeChhhHHHHHHHhhC---ccch
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME---PEIC 78 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~~---p~~v 78 (260)
|.....|+.++.||.|.-.. ...+++++++...+.|.... ..+++|+|||+||.+|+.+|.+- .+.|
T Consensus 23 l~~~~~v~~l~a~g~~~~~~---------~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~G~~V 93 (257)
T COG3319 23 LGPLLPVYGLQAPGYGAGEQ---------PFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQGEEV 93 (257)
T ss_pred hccCceeeccccCccccccc---------ccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhCCCeE
Confidence 45668899999999986433 34589999998888887774 45999999999999999999763 3468
Q ss_pred hhceEeccCcc
Q 024971 79 RGMILLNISLR 89 (260)
Q Consensus 79 ~~lvl~~~~~~ 89 (260)
..++++++...
T Consensus 94 a~L~llD~~~~ 104 (257)
T COG3319 94 AFLGLLDAVPP 104 (257)
T ss_pred EEEEEeccCCC
Confidence 99999999764
No 128
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=72.30 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
++.||.|+.+++||++.|.+.+- ...+....-..+.-.++.++. +.+++.|+|.||.-+..+|..||+ |++
T Consensus 265 ~~lgYsvLGwNhPGFagSTG~P~------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-Vka 337 (517)
T KOG1553|consen 265 AQLGYSVLGWNHPGFAGSTGLPY------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKA 337 (517)
T ss_pred HHhCceeeccCCCCccccCCCCC------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceE
Confidence 35689999999999999988662 223333332333345666765 579999999999999999999997 999
Q ss_pred ceEeccC
Q 024971 81 MILLNIS 87 (260)
Q Consensus 81 lvl~~~~ 87 (260)
+|+-++.
T Consensus 338 vvLDAtF 344 (517)
T KOG1553|consen 338 VVLDATF 344 (517)
T ss_pred EEeecch
Confidence 9987765
No 129
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.75 E-value=1.5e-07 Score=63.90 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred CCCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhhccc
Q 024971 181 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 181 ~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
.+.+++|.|.|.|+.|.+++...+..+++..++..+..-+ +||++...+ ...+.|.+|++.+..
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP~~~--~~~~~i~~fi~~~~~ 222 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVPNKA--KYKEKIADFIQSFLQ 222 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCCCch--HHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999988666667 699988654 666777777765533
No 130
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.6e-07 Score=63.20 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=52.3
Q ss_pred EEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCC-cchhchhHHHHHHHHhhhhcccc
Q 024971 188 VLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-PQVSLYLSLSSACLHTLSYLHTC 248 (260)
Q Consensus 188 ~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~~~~~p~~~~~~i~~~l~~~~~~ 248 (260)
+.++.+++|..+|......+++..|++++..++ +||. .++-+-+.+.+.|.+-|+.++++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ke 369 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLDKE 369 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhhhc
Confidence 677789999999998889999999999999999 6994 56677899999999999988754
No 131
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.69 E-value=9.1e-07 Score=66.27 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh---hc--CCceEEEEeChhhHHHHHHHhhCcc--
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD---VV--KDQAFFICNSIGGLVGLQAAVMEPE-- 76 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~lvGhS~Gg~~a~~~a~~~p~-- 76 (260)
..|+.|+++|+|=--+-.. ...+++..+.+..+.++ ++ .+++.++|+|.||.+++.++..-.+
T Consensus 108 ~~g~~vv~vdYrlaPe~~~----------p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~ 177 (312)
T COG0657 108 AAGAVVVSVDYRLAPEHPF----------PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRG 177 (312)
T ss_pred HcCCEEEecCCCCCCCCCC----------CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcC
Confidence 4689999999995544322 23455544444444433 33 4679999999999999999876443
Q ss_pred --chhhceEeccCccc
Q 024971 77 --ICRGMILLNISLRM 90 (260)
Q Consensus 77 --~v~~lvl~~~~~~~ 90 (260)
...+.+++.|....
T Consensus 178 ~~~p~~~~li~P~~d~ 193 (312)
T COG0657 178 LPLPAAQVLISPLLDL 193 (312)
T ss_pred CCCceEEEEEecccCC
Confidence 36788888887544
No 132
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.69 E-value=2.6e-06 Score=66.54 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCccEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------cCCceEEEEeChhhHHHHHHHhh--
Q 024971 4 AKSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVM-- 73 (260)
Q Consensus 4 ~~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvGhS~Gg~~a~~~a~~-- 73 (260)
.+..+++-+|.| |.|.|...... ....+.++.++++..+|+.+ ...+++|.|.|+||..+-.+|..
T Consensus 83 ~~~an~l~iD~PvGtGfS~~~~~~----~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~ 158 (415)
T PF00450_consen 83 NKFANLLFIDQPVGTGFSYGNDPS----DYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYIL 158 (415)
T ss_dssp GGTSEEEEE--STTSTT-EESSGG----GGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHH
T ss_pred ccccceEEEeecCceEEeeccccc----cccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhh
Confidence 345789999976 99999776531 12347788888888888765 33589999999999987766643
Q ss_pred --C------ccchhhceEeccCccc
Q 024971 74 --E------PEICRGMILLNISLRM 90 (260)
Q Consensus 74 --~------p~~v~~lvl~~~~~~~ 90 (260)
. +-.++|+++.++...+
T Consensus 159 ~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 159 QQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHTCC--STTSEEEEEEEESE-SBH
T ss_pred hccccccccccccccceecCccccc
Confidence 2 2347899999987654
No 133
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.67 E-value=1.4e-07 Score=66.27 Aligned_cols=49 Identities=24% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEecCCCCCCChHHHHHhhccCCC-ccEEEeCCCCCCcchhc
Q 024971 181 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQVSL 230 (260)
Q Consensus 181 ~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~ 230 (260)
-.+|++|+|.++|++|.+++++..+.+.+...+ .+++..+ +||.+....
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~~ 206 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRKK 206 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----H
T ss_pred cccCCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCCh
Confidence 346789999999999999999888888887666 6777777 589877653
No 134
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.62 E-value=8.5e-08 Score=55.41 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK 48 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (260)
++||.|+++|+||||.|+... ....+++++++|+..+++
T Consensus 41 ~~G~~V~~~D~rGhG~S~g~r------g~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 41 EQGYAVFAYDHRGHGRSEGKR------GHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred hCCCEEEEECCCcCCCCCCcc------cccCCHHHHHHHHHHHhC
Confidence 469999999999999999755 356789999999998864
No 135
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.60 E-value=2.4e-07 Score=65.36 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHH----HHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ----LNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
..++++++|+......-. ...+.+.++. +..+++.+ +.+++++|||||||.+|..++...+
T Consensus 38 ~~~d~ft~df~~~~s~~~----------g~~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~ 107 (225)
T PF07819_consen 38 SHFDFFTVDFNEELSAFH----------GRTLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPN 107 (225)
T ss_pred cceeEEEeccCccccccc----------cccHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccc
Confidence 357888888776532211 1233333333 33344444 4568999999999999998876543
Q ss_pred ---cchhhceEeccCcc
Q 024971 76 ---EICRGMILLNISLR 89 (260)
Q Consensus 76 ---~~v~~lvl~~~~~~ 89 (260)
+.|+.+|.++++..
T Consensus 108 ~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 108 YDPDSVKTIITLGTPHR 124 (225)
T ss_pred cccccEEEEEEEcCCCC
Confidence 46999999998753
No 136
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.2e-06 Score=68.60 Aligned_cols=184 Identities=16% Similarity=0.059 Sum_probs=109.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCC-CCCCccHHHHHHHHHHHHHhhc---CCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFF-DKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+.||.|+.+|-||............. ......++|.++-+.-+.++.| .+++.+-|+|+||.+++....++|+-++
T Consensus 674 slGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~Ifr 753 (867)
T KOG2281|consen 674 SLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFR 753 (867)
T ss_pred hcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceee
Confidence 46999999999997554332111000 0245678999999998888885 4689999999999999999999999777
Q ss_pred hceEeccCccccccCCCCCCCcchhHHHhhhhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCcc
Q 024971 80 GMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLET 159 (260)
Q Consensus 80 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (260)
..|.=+|..... .........+ ++ .++.....|. .
T Consensus 754 vAIAGapVT~W~------~YDTgYTERY------------------------------Mg----~P~~nE~gY~-----a 788 (867)
T KOG2281|consen 754 VAIAGAPVTDWR------LYDTGYTERY------------------------------MG----YPDNNEHGYG-----A 788 (867)
T ss_pred EEeccCcceeee------eecccchhhh------------------------------cC----CCccchhccc-----c
Confidence 666555543210 0000000000 00 0000000000 0
Q ss_pred chHHHHHHHHhhhCCCCCCccCCCCCCCEEEEecCCCCCCChHHHHH----hhccCCCccEEEeCCCCCCcch-hchhHH
Q 024971 160 GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQV-SLYLSL 234 (260)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~----~~~~~~~~~~~~~~~~gH~~~~-~~p~~~ 234 (260)
+.. ... .+.+..=....|++||--|..+....... +.+..+.-++.++|+-.|.+-. |..+-.
T Consensus 789 gSV---~~~---------VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~y 856 (867)
T KOG2281|consen 789 GSV---AGH---------VEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYY 856 (867)
T ss_pred hhH---HHH---------HhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhH
Confidence 000 000 23344334568999999998776554433 4444555789999999997654 344455
Q ss_pred HHHHHHhhhh
Q 024971 235 SSACLHTLSY 244 (260)
Q Consensus 235 ~~~i~~~l~~ 244 (260)
...+..|++.
T Consensus 857 E~rll~FlQ~ 866 (867)
T KOG2281|consen 857 EARLLHFLQE 866 (867)
T ss_pred HHHHHHHHhh
Confidence 6667777754
No 137
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.55 E-value=1.3e-06 Score=68.50 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=59.9
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcc-HHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
.++||.|+..|.||.|.|++... ...+ -.+-.-|+.+.+.+.. ..++..+|.|++|...+.+|+..|..++
T Consensus 77 aa~GYavV~qDvRG~~~SeG~~~------~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLk 150 (563)
T COG2936 77 AAQGYAVVNQDVRGRGGSEGVFD------PESSREAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALK 150 (563)
T ss_pred ecCceEEEEecccccccCCcccc------eeccccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchhe
Confidence 36899999999999999998763 2223 1112224444444442 3589999999999999999999888888
Q ss_pred hceEeccCccc
Q 024971 80 GMILLNISLRM 90 (260)
Q Consensus 80 ~lvl~~~~~~~ 90 (260)
+++...+....
T Consensus 151 ai~p~~~~~D~ 161 (563)
T COG2936 151 AIAPTEGLVDR 161 (563)
T ss_pred eeccccccccc
Confidence 88877776543
No 138
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.51 E-value=4.7e-06 Score=58.26 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 41 SQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 41 ~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
..+..+.++.++ +++++.|+|.||..+..++..+|+.+.++..+++.+
T Consensus 83 ~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 83 ALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred HHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 334444455544 489999999999999999999999999988888764
No 139
>PRK04940 hypothetical protein; Provisional
Probab=98.50 E-value=2.6e-05 Score=52.28 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=29.9
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
+++.|||+|+||..|..+|.++. + ..|+++|...+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P 94 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFP 94 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCCh
Confidence 57999999999999999999985 3 77889998643
No 140
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.49 E-value=5.3e-07 Score=55.22 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhh
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
+.|+|++.++.|+.+|.+.++.+++.+++++++.+++.||..+...-.-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 599999999999999999999999999999999999999988765556778888888864
No 141
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.48 E-value=6.7e-07 Score=65.09 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=49.3
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc-------CCceEEEEeChhhHHHHHHHhhCc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
.+-+|+.+++||.|.|.+.. +.++++.|-.+.++.+. .+++++.|||+||.++..++.++.
T Consensus 170 ~~aNvl~fNYpGVg~S~G~~----------s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 170 LGANVLVFNYPGVGSSTGPP----------SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred cCCcEEEECCCccccCCCCC----------CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 46789999999999998765 56888888877777762 257999999999999988666543
No 142
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.45 E-value=2.5e-07 Score=68.16 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=42.8
Q ss_pred CccCCCCCCCEEEEecCCCCCCChHHH-HHhhccCCCc--cEEEeCCCCCCcchhchhHH
Q 024971 178 EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVE--DFIVLPNVGHCPQVSLYLSL 234 (260)
Q Consensus 178 ~~~~~~i~~P~l~i~g~~D~~~~~~~~-~~~~~~~~~~--~~~~~~~~gH~~~~~~p~~~ 234 (260)
...+.+++.|++++.|..|.+.|.... ......+++. .+..++++.|+-+.+-.++.
T Consensus 244 ~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 244 TTGLVKVTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred cccceeeecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 456788999999999999997765532 3344445555 57888999999988876664
No 143
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.43 E-value=6e-06 Score=61.41 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh------hcCCceEEEEeChhhHHHHHHHhhC-----
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD------VVKDQAFFICNSIGGLVGLQAAVME----- 74 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~lvGhS~Gg~~a~~~a~~~----- 74 (260)
+.-|+++|+|=--+.. .+..++|-.+.+.-+.++ .+.++++|+|-|.||.+|..+|.+.
T Consensus 123 ~~vvvSVdYRLAPEh~----------~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~ 192 (336)
T KOG1515|consen 123 NCVVVSVDYRLAPEHP----------FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKL 192 (336)
T ss_pred CeEEEecCcccCCCCC----------CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccC
Confidence 5678888888332222 234566666666666554 2456899999999999999888652
Q ss_pred -ccchhhceEeccCccc
Q 024971 75 -PEICRGMILLNISLRM 90 (260)
Q Consensus 75 -p~~v~~lvl~~~~~~~ 90 (260)
+-++++.|++-|....
T Consensus 193 ~~~ki~g~ili~P~~~~ 209 (336)
T KOG1515|consen 193 SKPKIKGQILIYPFFQG 209 (336)
T ss_pred CCcceEEEEEEecccCC
Confidence 3569999999997644
No 144
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.38 E-value=5.5e-06 Score=58.06 Aligned_cols=78 Identities=13% Similarity=-0.002 Sum_probs=51.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------cCCceEEEEeChhhHHHHHHHhhCc-
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVMEP- 75 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvGhS~Gg~~a~~~a~~~p- 75 (260)
+.||-|+++++-..-.-+.. .+..+....++.+.+-++++ +..++.++|||.||-.|..+|..+.
T Consensus 71 SHGfIVVAPQl~~~~~p~~~-------~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~ 143 (307)
T PF07224_consen 71 SHGFIVVAPQLYTLFPPDGQ-------DEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYAT 143 (307)
T ss_pred hcCeEEEechhhcccCCCch-------HHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccc
Confidence 46899999998753221111 12223344444444444443 2458999999999999999998773
Q ss_pred -cchhhceEeccCc
Q 024971 76 -EICRGMILLNISL 88 (260)
Q Consensus 76 -~~v~~lvl~~~~~ 88 (260)
-.+.++|.++|..
T Consensus 144 ~lkfsaLIGiDPV~ 157 (307)
T PF07224_consen 144 SLKFSALIGIDPVA 157 (307)
T ss_pred cCchhheecccccC
Confidence 2488999999874
No 145
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.37 E-value=4e-06 Score=62.93 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred CCCCCCEEEEecCCCCCCChHHHHHhhccCCC-ccEEEeCCCCCCcchhchhHHHHHHHHhhhhccc
Q 024971 182 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 182 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
.++++|.++|.|..|.+..+.....+...+|+ ..+..+|+++|.... ..+.+.+..|+..+..
T Consensus 259 ~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~~ 322 (367)
T PF10142_consen 259 DRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNRIQN 322 (367)
T ss_pred HhcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHHHHc
Confidence 56689999999999999988888887777665 567788999998776 6677778888876543
No 146
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.35 E-value=1.1e-06 Score=66.97 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=25.9
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
+++.++|||+||..++..+.+. .++++.|++++.
T Consensus 228 ~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W 261 (379)
T PF03403_consen 228 SRIGLAGHSFGGATALQALRQD-TRFKAGILLDPW 261 (379)
T ss_dssp EEEEEEEETHHHHHHHHHHHH--TT--EEEEES--
T ss_pred hheeeeecCchHHHHHHHHhhc-cCcceEEEeCCc
Confidence 4689999999999999888776 579999999986
No 147
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.32 E-value=3.4e-06 Score=65.77 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=41.4
Q ss_pred ccCCCCCCCEEEEecCCCCCCChHHHHHhhcc-CCCccEEEeCCCCCCcch
Q 024971 179 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVGHCPQV 228 (260)
Q Consensus 179 ~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~ 228 (260)
+.+-.++.|+|++.|.+|..+++...+.++++ -...+++++.+++|.+-.
T Consensus 298 E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 298 EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAI 348 (784)
T ss_pred hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccC
Confidence 44556789999999999999999999988877 345789999999997553
No 148
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.32 E-value=8.4e-06 Score=58.64 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCCCCEEEEecCCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcch-hchhHHHHHHHHhh
Q 024971 183 QVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQV-SLYLSLSSACLHTL 242 (260)
Q Consensus 183 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~~l 242 (260)
...+|-++++++.|.+++.+..++..+. .-+++.+.++++.|..+. ++|++..+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 4459999999999999999877665433 223677788999998765 57999999998874
No 149
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.30 E-value=3.6e-06 Score=66.07 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc-------CCceEEEEeChhhHHHHHHHhhCccch
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
|--|+++++|-+|.|.+............+.++..+|+..+++++. ..|++++|-|+||.+|..+-.+||+.|
T Consensus 59 ~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~ 138 (434)
T PF05577_consen 59 GALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLF 138 (434)
T ss_dssp TEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-
T ss_pred CCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCee
Confidence 4578999999999998754333223456789999999999888774 137999999999999999999999999
Q ss_pred hhceEeccCcc
Q 024971 79 RGMILLNISLR 89 (260)
Q Consensus 79 ~~lvl~~~~~~ 89 (260)
.+.+..+++..
T Consensus 139 ~ga~ASSapv~ 149 (434)
T PF05577_consen 139 DGAWASSAPVQ 149 (434)
T ss_dssp SEEEEET--CC
T ss_pred EEEEeccceee
Confidence 99998888763
No 150
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.30 E-value=1.7e-05 Score=54.75 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=29.8
Q ss_pred cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 51 VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
+.+.++|||+|||-.+|..+....| ++..|.+++.+.+
T Consensus 55 ~y~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAINGT~~P 92 (213)
T PF04301_consen 55 GYREIYLVAWSMGVWAANRVLQGIP--FKRAIAINGTPYP 92 (213)
T ss_pred cCceEEEEEEeHHHHHHHHHhccCC--cceeEEEECCCCC
Confidence 4678999999999999988876554 6777777776544
No 151
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.24 E-value=2.5e-05 Score=52.94 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHhh---c--CCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccccccCCCCCCCcchhHHHhh
Q 024971 35 TFETWASQLNDFCKDV---V--KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~~---~--~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (260)
++...++.+..++++. + ..++.+-|.|+||.+++..+..+|..+.+++...+......
T Consensus 70 ~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----------------- 132 (206)
T KOG2112|consen 70 GLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----------------- 132 (206)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------------
Confidence 4455555566666554 3 24688889999999999999999877777776665421100
Q ss_pred hhhhhhhHHHHHHHhcChHHHHHHHHhccCCCCcccHHHHHHHhccCCccchHHHHHHHHhhhCCCCCCccCCCCCCCEE
Q 024971 110 LLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVL 189 (260)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l 189 (260)
. .+ + ......+ ..|++
T Consensus 133 -------------------------------------~---~~--~--------------------~~~~~~~--~~~i~ 148 (206)
T KOG2112|consen 133 -------------------------------------I---GL--P--------------------GWLPGVN--YTPIL 148 (206)
T ss_pred -------------------------------------h---hc--c--------------------CCccccC--cchhh
Confidence 0 00 0 0000011 68999
Q ss_pred EEecCCCCCCChHHHHH----hhccCCCccEEEeCCCCCCcchhchhHHHH
Q 024971 190 IAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQVSLYLSLSS 236 (260)
Q Consensus 190 ~i~g~~D~~~~~~~~~~----~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~ 236 (260)
..||+.|+++|....+. +......++++.++|.+|...-+.-+++..
T Consensus 149 ~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~~e~~~~~~ 199 (206)
T KOG2112|consen 149 LCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSPQELDDLKS 199 (206)
T ss_pred eecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccHHHHHHHHH
Confidence 99999999999875544 333334488999999999877544444433
No 152
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.15 E-value=1.1e-05 Score=60.20 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=47.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHH---------------HHHHHHHhh------cCCceEEEEeCh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS---------------QLNDFCKDV------VKDQAFFICNSI 62 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------~~~~~~lvGhS~ 62 (260)
.+||-|+++|.+|+|+......... ...++...++. |....++.+ +.++|.++|+||
T Consensus 158 k~GYVvla~D~~g~GER~~~e~~~~--~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 158 KRGYVVLAPDALGFGERGDMEGAAQ--GSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTTSEEEEE--TTSGGG-SSCCCTT--TTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred hCCCEEEEEcccccccccccccccc--ccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 5799999999999998765442211 11222223322 122233333 235899999999
Q ss_pred hhHHHHHHHhhCccchhhceEeccC
Q 024971 63 GGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 63 Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
||..++.+|+.. ++|++.|..+-.
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l 259 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYL 259 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhh
Confidence 999999999987 578887776654
No 153
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.14 E-value=1.7e-06 Score=64.62 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=48.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh------cCCceEEEEeChhhHHHHHHHhhCcc--
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPE-- 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~-- 76 (260)
.++.||++||...-...-.. .........+.+..++..| ..++++|||||+||.+|-.++.....
T Consensus 103 ~d~NVI~VDWs~~a~~~Y~~-------a~~n~~~vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ 175 (331)
T PF00151_consen 103 GDYNVIVVDWSRGASNNYPQ-------AVANTRLVGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGG 175 (331)
T ss_dssp S-EEEEEEE-HHHHSS-HHH-------HHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT--
T ss_pred CCceEEEEcchhhccccccc-------hhhhHHHHHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcc
Confidence 47999999996432211100 1112333444444444443 34689999999999999999988776
Q ss_pred chhhceEeccCccc
Q 024971 77 ICRGMILLNISLRM 90 (260)
Q Consensus 77 ~v~~lvl~~~~~~~ 90 (260)
+|..++.++|+.+.
T Consensus 176 ki~rItgLDPAgP~ 189 (331)
T PF00151_consen 176 KIGRITGLDPAGPL 189 (331)
T ss_dssp -SSEEEEES-B-TT
T ss_pred eeeEEEecCccccc
Confidence 89999999998654
No 154
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.09 E-value=8.5e-06 Score=58.16 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHhhcC--CceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 47 CKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 47 ~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
.++.++ .+++++|.|+||.-++.++.++|+.+.+.+++++.
T Consensus 261 as~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~ 303 (387)
T COG4099 261 ASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGG 303 (387)
T ss_pred hhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCC
Confidence 344444 47999999999999999999999999999999985
No 155
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=98.07 E-value=0.00082 Score=50.51 Aligned_cols=59 Identities=20% Similarity=0.025 Sum_probs=44.7
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccC------------------------CC-ccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFD------------------------SV-EDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
.++||+..|..|.+++.-..+.+.+.+ .+ .+++.+.++||+.. .+|++..+.+.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 489999999999998865544432221 12 45677789999996 59999999999
Q ss_pred Hhhhh
Q 024971 240 HTLSY 244 (260)
Q Consensus 240 ~~l~~ 244 (260)
+|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 99954
No 156
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.04 E-value=2.7e-05 Score=55.47 Aligned_cols=75 Identities=16% Similarity=0.033 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhh----Cc----
Q 024971 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVM----EP---- 75 (260)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~----~p---- 75 (260)
.++.+.||+.|.-..-.. ...+...-...+..+++.+ +.+++++++||||+.+.+.+... .+
T Consensus 50 ~~i~FsWPS~g~~~~Y~~------d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~ 123 (233)
T PF05990_consen 50 VVILFSWPSDGSLLGYFY------DRESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDV 123 (233)
T ss_pred eEEEEEcCCCCChhhhhh------hhhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhh
Confidence 799999999886322110 1123333344455555544 56799999999999999987643 11
Q ss_pred -cchhhceEeccCc
Q 024971 76 -EICRGMILLNISL 88 (260)
Q Consensus 76 -~~v~~lvl~~~~~ 88 (260)
.++..+++.+|-.
T Consensus 124 ~~~~~~viL~ApDi 137 (233)
T PF05990_consen 124 KARFDNVILAAPDI 137 (233)
T ss_pred HhhhheEEEECCCC
Confidence 3578889998864
No 157
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.02 E-value=0.00066 Score=53.02 Aligned_cols=59 Identities=20% Similarity=0.025 Sum_probs=45.3
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccC------------------------CC-ccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFD------------------------SV-EDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
..+||+..|..|.+++.-..+.+.+.+ .+ .+++.+.+|||+.. .+|++..+.+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 489999999999999876555433221 11 45677889999996 58999999999
Q ss_pred Hhhhh
Q 024971 240 HTLSY 244 (260)
Q Consensus 240 ~~l~~ 244 (260)
+|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 99954
No 158
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.01 E-value=0.00023 Score=48.84 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=46.6
Q ss_pred CccHHHHHHHHHHHHHhhcC----CceEEEEeChhhHHHHHHHh--hCccchhhceEeccCccc
Q 024971 33 FYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAV--MEPEICRGMILLNISLRM 90 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~----~~~~lvGhS~Gg~~a~~~a~--~~p~~v~~lvl~~~~~~~ 90 (260)
..++.+-++|+..++++++. +.++|+|||.|+.=.+.|.. ..|..+.+.|+.+|....
T Consensus 83 t~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDr 146 (299)
T KOG4840|consen 83 TFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDR 146 (299)
T ss_pred cccccccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchh
Confidence 45777889999999998853 37999999999998888873 356678999999987543
No 159
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.89 E-value=3.4e-05 Score=51.34 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc----chhhceEeccCc
Q 024971 36 FETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE----ICRGMILLNISL 88 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~----~v~~lvl~~~~~ 88 (260)
...+.+.+...++.. ...+++++|||+||.+|..++..... .+..++.++++.
T Consensus 7 ~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 7 ARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 344455555555444 45689999999999999999887654 456677777653
No 160
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.86 E-value=8e-05 Score=57.68 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 37 ETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 37 ~~~~~~~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
+.+++++.-.+++. +.++.+|+|+||||..|+.++.++|+++.+++.+++..
T Consensus 267 ~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 267 LAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 34456666666654 23468899999999999999999999999999999863
No 161
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.84 E-value=4.3e-05 Score=58.88 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhCcc------chhhceEeccCcc
Q 024971 38 TWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPE------ICRGMILLNISLR 89 (260)
Q Consensus 38 ~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~p~------~v~~lvl~~~~~~ 89 (260)
++...+.+.++.. ..++++||||||||.++..+....+. .|+++|.++++..
T Consensus 101 ~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 4455555555444 35799999999999999999887642 4999999998754
No 162
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.82 E-value=3.7e-05 Score=55.80 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhh-cCC--ceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 38 TWASQLNDFCKDV-VKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 38 ~~~~~~~~~~~~~-~~~--~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
-+.++|...+++- ... +..++|+||||..|+.++.++|+.+.+++.++|..
T Consensus 97 ~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 97 FLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp HHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred ehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 3445666666554 222 27899999999999999999999999999999864
No 163
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.78 E-value=7.9e-06 Score=60.72 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred cCCCCC-CCEEEEecCCCCCCChHHHHHhhccCC--CccEEEeCCCCCCcchhchh---HHHHHHHHhhh
Q 024971 180 LLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQVSLYL---SLSSACLHTLS 243 (260)
Q Consensus 180 ~~~~i~-~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~~~p~---~~~~~i~~~l~ 243 (260)
.+.++. +|+++++|.+|..+|......+.+... ..+...+++++|......+. +..+.+.+|+.
T Consensus 226 ~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 226 DAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hHhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 344454 899999999999999888887665533 35777888899987754434 55566666664
No 164
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.78 E-value=7.1e-05 Score=54.02 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.5
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
++.++|||+||+.+....+.+. .++..|+++..
T Consensus 242 ~~aViGHSFGgAT~i~~ss~~t-~FrcaI~lD~W 274 (399)
T KOG3847|consen 242 QAAVIGHSFGGATSIASSSSHT-DFRCAIALDAW 274 (399)
T ss_pred hhhheeccccchhhhhhhcccc-ceeeeeeeeee
Confidence 5789999999999988877664 58888888875
No 165
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.77 E-value=4.6e-05 Score=53.31 Aligned_cols=78 Identities=10% Similarity=-0.018 Sum_probs=40.2
Q ss_pred CCccE---EEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhh
Q 024971 4 AKSHR---VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (260)
Q Consensus 4 ~~~~~---v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~ 80 (260)
++||. |+++++-....+....... ....+..++.+.|.++++..+. ++.||||||||.++..+.... ..+++
T Consensus 27 ~~GY~~~~vya~tyg~~~~~~~~~~~~---~~~~~~~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~~~-~~~d~ 101 (219)
T PF01674_consen 27 AAGYCDSEVYALTYGSGNGSPSVQNAH---MSCESAKQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIKGG-GGADK 101 (219)
T ss_dssp HTT--CCCEEEE--S-CCHHTHHHHHH---B-HHHHHHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHHHC-TGGGT
T ss_pred HcCCCcceeEeccCCCCCCCCcccccc---cchhhHHHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHHHc-CCCCc
Confidence 46888 7999885444322211000 0111234556666667777788 999999999999998887544 33344
Q ss_pred ceEecc
Q 024971 81 MILLNI 86 (260)
Q Consensus 81 lvl~~~ 86 (260)
.+-+.+
T Consensus 102 ~~~lg~ 107 (219)
T PF01674_consen 102 VVNLGP 107 (219)
T ss_dssp EEE---
T ss_pred ccCccc
Confidence 444433
No 166
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.76 E-value=0.0017 Score=52.01 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 32 PFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
...++.|+++....+++.- ..+.++++|-|.||+++-..+...|+.++++|+-.|....
T Consensus 504 K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDv 564 (682)
T COG1770 504 KKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDV 564 (682)
T ss_pred ccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccch
Confidence 4568888888777776653 2347999999999999999999999999999999887654
No 167
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.72 E-value=9.9e-05 Score=48.28 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
...+.+.++++.....++++.|||+||.+|..++...
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 4445555655555556899999999999999988753
No 168
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.69 E-value=0.0001 Score=55.59 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCc--cchhhceEeccCcc
Q 024971 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP--EICRGMILLNISLR 89 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p--~~v~~lvl~~~~~~ 89 (260)
..-+.+..-+.+++...+.+++.++||||||..+..++...+ .+|+.++.++++-.
T Consensus 108 ~~~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 108 VRGEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 455666677777788888899999999999999999998887 78999999998743
No 169
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=97.62 E-value=0.00056 Score=50.73 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=55.4
Q ss_pred CCCCCCEEEEecCCCCCCChHHHHHhhccCCCcc-EEEeCCCCCCcchhchhHHHHHHHHhhhhcccccccccee
Q 024971 182 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLPNVGHCPQVSLYLSLSSACLHTLSYLHTCRCYDQVA 255 (260)
Q Consensus 182 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~~~~~~~~~ 255 (260)
.++..|..++.|+.|.+.+++.+..+...+|+.+ +..+|+..|... +..+.+.+..|+.+++..+.-.++.
T Consensus 326 ~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~flnrfq~~~~LP~l~ 397 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLNRFQMYPKLPKLE 397 (507)
T ss_pred hhccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4678999999999999998898888888888754 677899988765 4567777888888887766544443
No 170
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.58 E-value=0.00015 Score=51.49 Aligned_cols=48 Identities=29% Similarity=0.351 Sum_probs=38.9
Q ss_pred HHHHHHHHh-h--cCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 41 SQLNDFCKD-V--VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 41 ~~~~~~~~~-~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
+.+.-+++. + +.++..++|||+||.+++.....+|+.+...++++|..
T Consensus 122 ~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 122 EQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 344445554 2 33568999999999999999999999999999999974
No 171
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.54 E-value=0.00031 Score=52.84 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCC---CCCCccHHHHHHHHHHHHHhhcC------CceEEEEeChhhHHHHHHHhhCcc
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFF---DKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEPE 76 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~lvGhS~Gg~~a~~~a~~~p~ 76 (260)
+--++-+++|-+|+|.+-...... .....+.++-..|...++..+.- .+++.+|.|+||++|..+=.+||.
T Consensus 111 ~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPH 190 (492)
T KOG2183|consen 111 KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPH 190 (492)
T ss_pred CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChh
Confidence 446788999999999765432111 12344566666677777776632 489999999999999999999999
Q ss_pred chhhceEeccCc
Q 024971 77 ICRGMILLNISL 88 (260)
Q Consensus 77 ~v~~lvl~~~~~ 88 (260)
.|.|...-+.+.
T Consensus 191 iv~GAlAaSAPv 202 (492)
T KOG2183|consen 191 IVLGALAASAPV 202 (492)
T ss_pred hhhhhhhccCce
Confidence 888877666554
No 172
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.48 E-value=0.0066 Score=46.06 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=55.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCc-----cchhh
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP-----EICRG 80 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p-----~~v~~ 80 (260)
...++++|+.-...-.... .-+..+.+.++-...+++..|.++++|+|-|.||.+++.+..... ..-++
T Consensus 154 ~~SILvLDYsLt~~~~~~~------~yPtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~ 227 (374)
T PF10340_consen 154 EVSILVLDYSLTSSDEHGH------KYPTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKS 227 (374)
T ss_pred CCeEEEEeccccccccCCC------cCchHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCce
Confidence 3467777766443001111 134567777777778887778899999999999999998875321 12579
Q ss_pred ceEeccCcccc
Q 024971 81 MILLNISLRML 91 (260)
Q Consensus 81 lvl~~~~~~~~ 91 (260)
+|+++|.....
T Consensus 228 ~iLISPWv~l~ 238 (374)
T PF10340_consen 228 AILISPWVNLV 238 (374)
T ss_pred eEEECCCcCCc
Confidence 99999987664
No 173
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.46 E-value=0.00043 Score=53.41 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=67.4
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcC-------CceEEEEeChhhHHHHHHHhhCccch
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-------DQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
|-.|+.+++|-+|.|.+......+.....+.++...|+.++|++++. .+.+.+|-|+-|.++..+=.++|+.+
T Consensus 118 gA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~ 197 (514)
T KOG2182|consen 118 GATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELT 197 (514)
T ss_pred CCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhh
Confidence 56899999999999976554333333456788888999999988743 27999999999999999999999999
Q ss_pred hhceEeccCc
Q 024971 79 RGMILLNISL 88 (260)
Q Consensus 79 ~~lvl~~~~~ 88 (260)
.|.|..+++.
T Consensus 198 ~GsvASSapv 207 (514)
T KOG2182|consen 198 VGSVASSAPV 207 (514)
T ss_pred eeecccccce
Confidence 9988887765
No 174
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.43 E-value=0.0035 Score=46.83 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=33.6
Q ss_pred HHhhcCCceEEEEeChhhHHHHHHHhhCcc-chhhceEeccC
Q 024971 47 CKDVVKDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNIS 87 (260)
Q Consensus 47 ~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~-~v~~lvl~~~~ 87 (260)
.+..+..+++||||+.|+..++.+....+. .++++|++++.
T Consensus 187 ~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 187 AQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAY 228 (310)
T ss_pred HHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCC
Confidence 333455669999999999999999988764 48999999985
No 175
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.41 E-value=0.0005 Score=48.29 Aligned_cols=56 Identities=11% Similarity=-0.075 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc-----chhhceEeccCcc
Q 024971 34 YTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE-----ICRGMILLNISLR 89 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~-----~v~~lvl~~~~~~ 89 (260)
.+..++...+..++..| +++++.+|||||||.-...|+..+.. .++++|.++.+..
T Consensus 113 ~s~~~~s~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 113 ASGLDQSKWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred CchhhHHHHHHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 35556666666666555 67899999999999999999876532 3899999998754
No 176
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.38 E-value=0.00059 Score=46.55 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
.++.+.||||||.=|+..+.+.|.+.+++-..+|..++
T Consensus 141 ~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP 178 (283)
T KOG3101|consen 141 LKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNP 178 (283)
T ss_pred hhcceeccccCCCceEEEEEcCcccccceeccccccCc
Confidence 47899999999999999999999999988888876543
No 177
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.37 E-value=0.0005 Score=48.55 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=29.6
Q ss_pred CceEEEEeChhhHHHHHHHhhCc----cchhhceEeccCc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEP----EICRGMILLNISL 88 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p----~~v~~lvl~~~~~ 88 (260)
+++++.|||.||.+|..++...+ ++|.+++..+++.
T Consensus 84 ~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPG 123 (224)
T PF11187_consen 84 GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPG 123 (224)
T ss_pred CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCC
Confidence 36999999999999999988743 4688888888764
No 178
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.29 E-value=0.00043 Score=48.92 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcC--CceEEEEeChhhHHHHHHHh
Q 024971 39 WASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 39 ~~~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~ 72 (260)
+++.+.+.++.... .++.+|||||||.++-.+..
T Consensus 62 L~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 62 LAEEILEHIKDYESKIRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred HHHHHHHhccccccccccceEEEecccHHHHHHHHH
Confidence 34444444444443 48999999999999876554
No 179
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.29 E-value=0.00045 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.6
Q ss_pred CCceEEEEeChhhHHHHHHHhhC
Q 024971 52 KDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
..++++.|||+||.+|..++...
T Consensus 127 ~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 127 DYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred CceEEEEccCHHHHHHHHHHHHH
Confidence 45799999999999999888753
No 180
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=97.27 E-value=0.028 Score=40.81 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhH-----HHHHHHhhCccchh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGL-----VGLQAAVMEPEICR 79 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~-----~a~~~a~~~p~~v~ 79 (260)
....|+..||-.--.-... .+.++++++++.+.+.++.+|.+ +++++.+.-+. +++..+...|..-.
T Consensus 129 p~~~vyitDW~dAr~Vp~~-------~G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQP~vPvLAAisLM~~~~~p~~Ps 200 (415)
T COG4553 129 PYHDVYITDWVDARMVPLE-------AGHFDLDDYIDYVIEMINFLGPD-AHVMAVCQPTVPVLAAISLMEEDGDPNVPS 200 (415)
T ss_pred cccceeEeeccccceeecc-------cCCccHHHHHHHHHHHHHHhCCC-CcEEEEecCCchHHHHHHHHHhcCCCCCCc
Confidence 3455666666543222222 25789999999999999999965 78888887654 34444445676778
Q ss_pred hceEeccCccc
Q 024971 80 GMILLNISLRM 90 (260)
Q Consensus 80 ~lvl~~~~~~~ 90 (260)
.++++++++..
T Consensus 201 sMtlmGgPIDa 211 (415)
T COG4553 201 SMTLMGGPIDA 211 (415)
T ss_pred eeeeecCcccc
Confidence 89999887643
No 181
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0017 Score=48.34 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhh--------Cccc
Q 024971 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM--------EPEI 77 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~--------~p~~ 77 (260)
....+.+.||..|.--.-.-.. ....++-..+..-+..+.+....++++|++||||..+++....+ -+.+
T Consensus 146 ~~~pVvFSWPS~g~l~~Yn~Dr--eS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~k 223 (377)
T COG4782 146 DGVPVVFSWPSRGSLLGYNYDR--ESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAK 223 (377)
T ss_pred CcceEEEEcCCCCeeeecccch--hhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhh
Confidence 3566778888777532211000 01334444444444455555567789999999999999887643 2346
Q ss_pred hhhceEeccCc
Q 024971 78 CRGMILLNISL 88 (260)
Q Consensus 78 v~~lvl~~~~~ 88 (260)
++-+|+-+|-.
T Consensus 224 i~nViLAaPDi 234 (377)
T COG4782 224 IKNVILAAPDI 234 (377)
T ss_pred hhheEeeCCCC
Confidence 88888888754
No 182
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.00064 Score=55.42 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=38.4
Q ss_pred CCccHHHHHHHHHHHHHhh-----c--------CCceEEEEeChhhHHHHHHHhh---CccchhhceEeccCc
Q 024971 32 PFYTFETWASQLNDFCKDV-----V--------KDQAFFICNSIGGLVGLQAAVM---EPEICRGMILLNISL 88 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-----~--------~~~~~lvGhS~Gg~~a~~~a~~---~p~~v~~lvl~~~~~ 88 (260)
...++.+.++-+.+.++.+ + ...++++||||||.+|...+.. .++.|.-++..+++.
T Consensus 148 ~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 148 HGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 3457777777766666543 2 1249999999999999877642 244566677666654
No 183
>COG0627 Predicted esterase [General function prediction only]
Probab=97.17 E-value=0.00054 Score=50.90 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=42.9
Q ss_pred ccHHHHH-HHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhhCccchhhceEeccCccc
Q 024971 34 YTFETWA-SQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (260)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 90 (260)
+.++++. +++-..+++... +...++||||||.=|+.+|.++|++++.+..+++...+
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~ 189 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSP 189 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccc
Confidence 5555554 345534443322 26789999999999999999999999999999987654
No 184
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.014 Score=46.89 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=61.4
Q ss_pred CCCccEEEEEcCCCCCCCCCCCC-CCCCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNP-RDFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
|..|+-....|.||=|.-...-. .........+++++...+.-+++.- ...+..+.|.|.||.++..++..+|+.+.
T Consensus 496 ld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~ 575 (712)
T KOG2237|consen 496 LDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFG 575 (712)
T ss_pred EecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhh
Confidence 34677777788998775432111 0001124557777777666666542 33578999999999999999999999999
Q ss_pred hceEeccCccc
Q 024971 80 GMILLNISLRM 90 (260)
Q Consensus 80 ~lvl~~~~~~~ 90 (260)
++|+--|....
T Consensus 576 avia~VpfmDv 586 (712)
T KOG2237|consen 576 AVIAKVPFMDV 586 (712)
T ss_pred hhhhcCcceeh
Confidence 99988876543
No 185
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.01 Score=43.19 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
.-+|.|.|+||.+++..+..+|+++-.++..+|..
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~ 212 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSF 212 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhceeeccCCcc
Confidence 46899999999999999999999999999998864
No 186
>PLN02162 triacylglycerol lipase
Probab=97.14 E-value=0.0012 Score=50.98 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
++.+.+.+++.+....++++.|||+||.+|..+|.
T Consensus 263 ~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 263 TIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 33445555555555568999999999999998765
No 187
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.13 E-value=0.0018 Score=43.71 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 35 TFETWASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
-.+.-+.++..+++.+.. .++.++|||+|+.++-..+...+..+..+|+++++.
T Consensus 86 ~A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG 144 (177)
T PF06259_consen 86 YARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPG 144 (177)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCC
Confidence 355666777777777632 368999999999999988877667799999998764
No 188
>PLN00413 triacylglycerol lipase
Probab=97.04 E-value=0.0018 Score=50.18 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
++.+.+.++++.....++++.|||+||.+|..+|.
T Consensus 269 ~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 269 TILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 45556667777666668999999999999998875
No 189
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.02 E-value=0.0013 Score=50.55 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=33.0
Q ss_pred HhhcCCceEEEEeChhhHHHHHHHhhCcc--------chhhceEeccCc
Q 024971 48 KDVVKDQAFFICNSIGGLVGLQAAVMEPE--------ICRGMILLNISL 88 (260)
Q Consensus 48 ~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~--------~v~~lvl~~~~~ 88 (260)
+.-|.+|++||+||||+.+.+.+...+++ .+++++-++++.
T Consensus 177 ~~~G~kkVvlisHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p~ 225 (473)
T KOG2369|consen 177 KLNGGKKVVLISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAPW 225 (473)
T ss_pred HHcCCCceEEEecCCccHHHHHHHhcccccchhHHHHHHHHHHccCchh
Confidence 33356899999999999999999988776 377888777654
No 190
>PLN02571 triacylglycerol lipase
Probab=97.00 E-value=0.0013 Score=50.38 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhh
Q 024971 37 ETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+++.+++..+++..... ++++.|||+||.+|+..|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 34556666667665433 68999999999999998864
No 191
>PLN02454 triacylglycerol lipase
Probab=97.00 E-value=0.0014 Score=50.10 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhh
Q 024971 42 QLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 42 ~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~ 73 (260)
.+..+++..... ++++.|||+||.+|+.+|..
T Consensus 215 ~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 215 KIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 344444444333 38999999999999998854
No 192
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.95 E-value=0.004 Score=45.09 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 35 TFETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
+...+.+.+..++.+.+++ ++++.|.|-||.++..++..+|+.+.++..++...
T Consensus 124 dVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 124 DVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred HHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 4445555566666677776 79999999999999999999999999999888764
No 193
>PLN02633 palmitoyl protein thioesterase family protein
Probab=96.94 E-value=0.0097 Score=43.72 Aligned_cols=58 Identities=14% Similarity=-0.021 Sum_probs=44.2
Q ss_pred CccHHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCcc--chhhceEeccCccc
Q 024971 33 FYTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNISLRM 90 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p~--~v~~lvl~~~~~~~ 90 (260)
...+.+.++.+.+-+.... .+-+++||+|.||.++-.++.+.|+ .|+.+|.++++...
T Consensus 72 ~~~~~~Qve~vce~l~~~~~l~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggph~G 133 (314)
T PLN02633 72 LMPLTQQAEIACEKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHAG 133 (314)
T ss_pred eeCHHHHHHHHHHHHhhchhhhCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCCCCC
Confidence 4466677766665555421 1359999999999999999999987 49999999987544
No 194
>COG3150 Predicted esterase [General function prediction only]
Probab=96.92 E-value=0.0032 Score=41.38 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=44.7
Q ss_pred CccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccCcc
Q 024971 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 89 (260)
..+....++.+..++...+.+...|+|-|+||..|.+++.++. +++ |+++|...
T Consensus 39 ~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G--ira-v~~NPav~ 92 (191)
T COG3150 39 PHDPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG--IRA-VVFNPAVR 92 (191)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC--Chh-hhcCCCcC
Confidence 3577888899999999998888999999999999999999885 444 45777653
No 195
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.84 E-value=0.0029 Score=43.15 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHh----hcCCceEEEEeChhhHHHHHHHhh------CccchhhceEeccCc
Q 024971 35 TFETWASQLNDFCKD----VVKDQAFFICNSIGGLVGLQAAVM------EPEICRGMILLNISL 88 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~----~~~~~~~lvGhS~Gg~~a~~~a~~------~p~~v~~lvl~~~~~ 88 (260)
+...-+.++...++. ....+++|+|+|.|+.++..++.. ..++|.++++++-+.
T Consensus 59 S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~ 122 (179)
T PF01083_consen 59 SVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPR 122 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCc
Confidence 333444444444443 345689999999999999999877 235688888887654
No 196
>PLN02408 phospholipase A1
Probab=96.80 E-value=0.0025 Score=48.11 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhhC
Q 024971 40 ASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+.+..+++..... ++++.|||+||.+|..+|...
T Consensus 185 l~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 185 REEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 34555666655433 589999999999999988653
No 197
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.76 E-value=0.004 Score=43.08 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHhhc-CCceEEEEeChhhHHHHHHHhhC
Q 024971 34 YTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
....|..+....++++.+ .++++|+|||.|+.+..++..++
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 345555666666777774 45999999999999999998764
No 198
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=96.75 E-value=0.0065 Score=48.95 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=50.5
Q ss_pred ccEEEEEcCC-C---CCCCCCCCCCCCCCCCCccHHHHHH---HHHHHHHhhcC--CceEEEEeChhhHHHHHHHhh--C
Q 024971 6 SHRVYSIDLI-G---YGYSDKPNPRDFFDKPFYTFETWAS---QLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVM--E 74 (260)
Q Consensus 6 ~~~v~~~D~~-G---~G~S~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~--~ 74 (260)
++-|+++++| | +..+..... .....+.|... .+.+-++.+|. +++.|+|+|.||..+..++.. .
T Consensus 125 ~~~vv~~~yRlg~~g~~~~~~~~~-----~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~ 199 (493)
T cd00312 125 NVIVVSINYRLGVLGFLSTGDIEL-----PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDS 199 (493)
T ss_pred CEEEEEecccccccccccCCCCCC-----CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcch
Confidence 3889999999 3 332221110 12333444443 44455555554 479999999999999888765 3
Q ss_pred ccchhhceEeccCcc
Q 024971 75 PEICRGMILLNISLR 89 (260)
Q Consensus 75 p~~v~~lvl~~~~~~ 89 (260)
+..++++|+.++...
T Consensus 200 ~~lf~~~i~~sg~~~ 214 (493)
T cd00312 200 KGLFHRAISQSGSAL 214 (493)
T ss_pred hHHHHHHhhhcCCcc
Confidence 456899999887653
No 199
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=96.72 E-value=0.0036 Score=50.05 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhC-----------c----cchhhceEeccCcc
Q 024971 37 ETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVME-----------P----EICRGMILLNISLR 89 (260)
Q Consensus 37 ~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~-----------p----~~v~~lvl~~~~~~ 89 (260)
+++-..+.++++.. +.++++|+||||||.+++.+...- + ..|++.|.++++..
T Consensus 193 d~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~l 264 (642)
T PLN02517 193 DQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPFL 264 (642)
T ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheecccccC
Confidence 34444455555543 357999999999999999987532 1 24899999998753
No 200
>PLN02934 triacylglycerol lipase
Probab=96.61 E-value=0.0041 Score=48.77 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
.....+.++++.....++++.|||+||.+|..+|.
T Consensus 306 ~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 35555666676666668999999999999998874
No 201
>PLN02324 triacylglycerol lipase
Probab=96.51 E-value=0.005 Score=47.22 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+.+.|..+++..... ++++.|||+||.+|+..|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 334555666655432 58999999999999988854
No 202
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0087 Score=41.11 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCCCccEEEEEcCCC---CCCCCCCCCCCCCCCCCccHHHHHHHH-HHHHHhhcCCceEEEEeChhhHHHHHHHhhCcc-
Q 024971 2 VLAKSHRVYSIDLIG---YGYSDKPNPRDFFDKPFYTFETWASQL-NDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE- 76 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G---~G~S~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~- 76 (260)
+.+.||.|++.+--- +-.+...+. ....+..+.+..+ ..++.....+.++++.||.||...+.+..++|+
T Consensus 140 Av~~Gygviv~N~N~~~kfye~k~np~-----kyirt~veh~~yvw~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 140 AVAEGYGVIVLNPNRERKFYEKKRNPQ-----KYIRTPVEHAKYVWKNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred HHHcCCcEEEeCCchhhhhhhcccCcc-----hhccchHHHHHHHHHHHhcccCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 456788888876431 222222111 1222333334333 344445566789999999999999999999874
Q ss_pred -chhhceEeccCc
Q 024971 77 -ICRGMILLNISL 88 (260)
Q Consensus 77 -~v~~lvl~~~~~ 88 (260)
+|.++.+.+.+.
T Consensus 215 ~~v~aialTDs~~ 227 (297)
T KOG3967|consen 215 ESVFAIALTDSAM 227 (297)
T ss_pred cceEEEEeecccc
Confidence 577777777663
No 203
>PLN02310 triacylglycerol lipase
Probab=96.39 E-value=0.0062 Score=46.65 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhc----CCceEEEEeChhhHHHHHHHhh
Q 024971 38 TWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 38 ~~~~~~~~~~~~~~----~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
++.+.+..+++.+. ..++++.|||+||.+|+..|..
T Consensus 190 qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 190 QVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 34445566665552 1368999999999999988753
No 204
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.37 E-value=0.0064 Score=45.73 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=30.8
Q ss_pred cCCceEEEEeChhhHHHHHHHhhCccc-----hhhceEeccCc
Q 024971 51 VKDQAFFICNSIGGLVGLQAAVMEPEI-----CRGMILLNISL 88 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~~~p~~-----v~~lvl~~~~~ 88 (260)
+.+|+.|||||+|+.+...+...-.++ |+.+++++.+.
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv 260 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPV 260 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCC
Confidence 667999999999999998877654433 78889998764
No 205
>PLN02802 triacylglycerol lipase
Probab=96.37 E-value=0.0066 Score=47.65 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+.+.+..+++....+ ++++.|||+||.+|..+|..
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 334555556555332 68999999999999988764
No 206
>PLN02753 triacylglycerol lipase
Probab=96.28 E-value=0.0076 Score=47.52 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+.+.+..+++.... .++++.|||+||.+|+..|..
T Consensus 293 Vl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 293 ILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 34445556655532 379999999999999998853
No 207
>PLN02209 serine carboxypeptidase
Probab=96.21 E-value=0.016 Score=45.51 Aligned_cols=59 Identities=24% Similarity=0.111 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccC------------------------CC-ccEEEeCCCCCCcchhchhHHHHHHH
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFD------------------------SV-EDFIVLPNVGHCPQVSLYLSLSSACL 239 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 239 (260)
.++||+..|..|.+++.-..+.+.+.+ .+ .+++.+.+|||+.. .+|++..+.+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 479999999999999876555433221 22 45677889999996 59999999999
Q ss_pred Hhhhh
Q 024971 240 HTLSY 244 (260)
Q Consensus 240 ~~l~~ 244 (260)
+|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 99853
No 208
>PLN03037 lipase class 3 family protein; Provisional
Probab=96.20 E-value=0.0086 Score=47.15 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhc----CCceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~----~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
..+++..+++.+. ..++++.|||+||.+|+..|..
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 4456666666553 1268999999999999988854
No 209
>PLN02761 lipase class 3 family protein
Probab=96.15 E-value=0.0096 Score=46.93 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhc-----C-CceEEEEeChhhHHHHHHHh
Q 024971 38 TWASQLNDFCKDVV-----K-DQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 38 ~~~~~~~~~~~~~~-----~-~~~~lvGhS~Gg~~a~~~a~ 72 (260)
++.+.|..+++... . -++++.|||+||.+|...|.
T Consensus 273 qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 273 QVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 34445556666552 1 26999999999999998875
No 210
>PLN02719 triacylglycerol lipase
Probab=96.12 E-value=0.011 Score=46.61 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcC-----CceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~~-----~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+...+..+++.... .++++.|||+||.+|..+|..
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 33445555555432 268999999999999998853
No 211
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.90 E-value=0.023 Score=43.19 Aligned_cols=60 Identities=23% Similarity=0.196 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCcc
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE 76 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~ 76 (260)
+|+.|+.+|-.-|=.|.+ +.++.++|+..+++.+ +..++.|+|+|+|+=+.-..-.+.|.
T Consensus 286 ~gvpVvGvdsLRYfW~~r------------tPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~L~~ 349 (456)
T COG3946 286 QGVPVVGVDSLRYFWSER------------TPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNRLPP 349 (456)
T ss_pred CCCceeeeehhhhhhccC------------CHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhHHHHHhCCH
Confidence 578888888554544444 5678888888888876 55789999999999877665555553
No 212
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.82 E-value=0.019 Score=43.85 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.8
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
|++++|+|.||.+|..+|.-.|..+++++=-++..
T Consensus 185 p~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~ 219 (403)
T PF11144_consen 185 PKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYA 219 (403)
T ss_pred cEEEEecCcHHHHHHHHHhhCccceeEEEecCccc
Confidence 89999999999999999999999998888666543
No 213
>PLN02606 palmitoyl-protein thioesterase
Probab=95.79 E-value=0.032 Score=41.07 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCcc--chhhceEeccCccc
Q 024971 34 YTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNISLRM 90 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p~--~v~~lvl~~~~~~~ 90 (260)
..+.+.++.+.+-+.... .+-+++||+|.||.++-.++.+.|+ .|+.+|.++++...
T Consensus 74 ~~~~~Qv~~vce~l~~~~~L~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggph~G 134 (306)
T PLN02606 74 MPLRQQASIACEKIKQMKELSEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHAG 134 (306)
T ss_pred cCHHHHHHHHHHHHhcchhhcCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCCcCC
Confidence 355666666655554421 1359999999999999999999987 49999999987543
No 214
>PLN02847 triacylglycerol lipase
Probab=95.49 E-value=0.03 Score=45.00 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.2
Q ss_pred CceEEEEeChhhHHHHHHHhh
Q 024971 53 DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
-+++++|||+||.+|..++..
T Consensus 251 YkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CeEEEeccChHHHHHHHHHHH
Confidence 378999999999999988754
No 215
>PLN02209 serine carboxypeptidase
Probab=95.46 E-value=0.051 Score=42.84 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=50.4
Q ss_pred CccEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------cCCceEEEEeChhhHHHHHHHhh---
Q 024971 5 KSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVM--- 73 (260)
Q Consensus 5 ~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvGhS~Gg~~a~~~a~~--- 73 (260)
+..+++-+|.| |.|.|-...+. ...+-++.++++..+++.. ...+++|.|.|+||..+-.+|..
T Consensus 116 ~~anllfiDqPvGtGfSy~~~~~-----~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~ 190 (437)
T PLN02209 116 KTANIIFLDQPVGSGFSYSKTPI-----ERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISK 190 (437)
T ss_pred hcCcEEEecCCCCCCccCCCCCC-----CccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHh
Confidence 44689999955 89998654321 1122223445555555543 23589999999999876666543
Q ss_pred -C------ccchhhceEeccCcc
Q 024971 74 -E------PEICRGMILLNISLR 89 (260)
Q Consensus 74 -~------p~~v~~lvl~~~~~~ 89 (260)
. +-.++|+++.++...
T Consensus 191 ~~~~~~~~~inl~Gi~igng~td 213 (437)
T PLN02209 191 GNYICCNPPINLQGYVLGNPITH 213 (437)
T ss_pred hcccccCCceeeeeEEecCcccC
Confidence 1 113678888887654
No 216
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=95.40 E-value=0.03 Score=42.55 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhh
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
..+.+++..+++....-++.+-|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 4566777777777776689999999999999988864
No 217
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=95.33 E-value=0.051 Score=39.61 Aligned_cols=54 Identities=15% Similarity=-0.040 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCcc-chhhceEeccCcc
Q 024971 36 FETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNISLR 89 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p~-~v~~lvl~~~~~~ 89 (260)
+.+.++.+.+.++... .+-++++|+|.||.++-.++.++|+ .|+.+|.++++..
T Consensus 61 v~~Qv~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~ 117 (279)
T PF02089_consen 61 VNDQVEQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHM 117 (279)
T ss_dssp HHHHHHHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT
T ss_pred HHHHHHHHHHHHhhChhhhcceeeeeeccccHHHHHHHHHCCCCCceeEEEecCccc
Confidence 3444444444444321 1459999999999999999999865 5999999998753
No 218
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.25 E-value=0.13 Score=36.68 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=41.4
Q ss_pred ccEEEEEcCCCC-CCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhC
Q 024971 6 SHRVYSIDLIGY-GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 6 ~~~v~~~D~~G~-G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
|+.+..+++|.. +--...... ....+..+-++.+.+.++.. ..++++++|+|+|+.++...+.+.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~----t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSP----TYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CcceEEecCCchhcCcCCCCCC----ccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHH
Confidence 677888888862 211000000 13446666667777666652 336899999999999999877653
No 219
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.17 E-value=0.045 Score=43.02 Aligned_cols=59 Identities=22% Similarity=0.057 Sum_probs=46.0
Q ss_pred CCEEEEecCCCCCCChHHHHHhhcc-------------------------CCCccEEEeCCCCCCcchhchhHHHHHHHH
Q 024971 186 CPVLIAWGDKDPWEPIELGRAYGNF-------------------------DSVEDFIVLPNVGHCPQVSLYLSLSSACLH 240 (260)
Q Consensus 186 ~P~l~i~g~~D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~ 240 (260)
.++++..|+.|.++|.-..+.+.+. ..+..+..+.|+||++..++|+.....+..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999999987655543211 011245778899999999999999999999
Q ss_pred hhhh
Q 024971 241 TLSY 244 (260)
Q Consensus 241 ~l~~ 244 (260)
|+..
T Consensus 444 fl~g 447 (454)
T KOG1282|consen 444 FLNG 447 (454)
T ss_pred HHcC
Confidence 9964
No 220
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=95.17 E-value=0.15 Score=41.17 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCccEEEEEcCCCCCCCCCCCC-CCCCCCCCccHHHHHHHHHHHHHhh--cCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNP-RDFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
|.+|..-+..++||=|+=.+.-. ..........++|++..+..++++- ..+++-+.|-|-||.+.-.+..++||.+.
T Consensus 447 LerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfg 526 (648)
T COG1505 447 LERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFG 526 (648)
T ss_pred HhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhC
Confidence 56777788889998776432100 0000012334555555444444432 12468899999999999999999999888
Q ss_pred hceEeccCc
Q 024971 80 GMILLNISL 88 (260)
Q Consensus 80 ~lvl~~~~~ 88 (260)
++|.--|..
T Consensus 527 A~v~evPll 535 (648)
T COG1505 527 AAVCEVPLL 535 (648)
T ss_pred ceeeccchh
Confidence 877666653
No 221
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.043 Score=43.92 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHhhc---CCceEEEEeChhhHHHHHHHhh-----Ccc------chhhceEeccCc
Q 024971 34 YTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVM-----EPE------ICRGMILLNISL 88 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~---~~~~~lvGhS~Gg~~a~~~a~~-----~p~------~v~~lvl~~~~~ 88 (260)
.++..-...+.+.+.+.+ .++++.+||||||.++=.+... .|+ ..+|+++++.+.
T Consensus 504 ~sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PH 572 (697)
T KOG2029|consen 504 RSLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPH 572 (697)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCC
Confidence 345555555555555553 3589999999999888766532 333 256788877764
No 222
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=0.17 Score=33.29 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=28.0
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceEeccCcc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 89 (260)
+.+.+|++|||-.+|-++....+ +++.+.+++...
T Consensus 57 ~hirlvAwSMGVwvAeR~lqg~~--lksatAiNGTgL 91 (214)
T COG2830 57 RHIRLVAWSMGVWVAERVLQGIR--LKSATAINGTGL 91 (214)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcc--ccceeeecCCCC
Confidence 46789999999999999987765 677777776543
No 223
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=94.47 E-value=0.1 Score=41.10 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=51.3
Q ss_pred ccEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------c--CCceEEEEeChhhHHHHHHHhhCc
Q 024971 6 SHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------V--KDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 6 ~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
.-.++-+|+| |.|.|....+ ...-+.....+|+..+.+.+ . ..+.+|+|-|+||.-+-.+|..--
T Consensus 146 ~adLvFiDqPvGTGfS~a~~~-----e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~ 220 (498)
T COG2939 146 FADLVFIDQPVGTGFSRALGD-----EKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELL 220 (498)
T ss_pred CCceEEEecCcccCccccccc-----ccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHH
Confidence 3468889955 9999975222 13334555555555444433 2 248999999999999888886544
Q ss_pred c---chhhceEeccCcc
Q 024971 76 E---ICRGMILLNISLR 89 (260)
Q Consensus 76 ~---~v~~lvl~~~~~~ 89 (260)
+ ..++++++++...
T Consensus 221 ~~~~~~~~~~nlssvli 237 (498)
T COG2939 221 EDNIALNGNVNLSSVLI 237 (498)
T ss_pred HhccccCCceEeeeeee
Confidence 3 3667777766543
No 224
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=94.32 E-value=0.085 Score=36.04 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=43.1
Q ss_pred CCCEEEEecCCCCCCChHHHHH---hhccCCC--ccEEEeCCCCCCcchhc---hhHHHHHHHHhhhh
Q 024971 185 KCPVLIAWGDKDPWEPIELGRA---YGNFDSV--EDFIVLPNVGHCPQVSL---YLSLSSACLHTLSY 244 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~---~~~~~~~--~~~~~~~~~gH~~~~~~---p~~~~~~i~~~l~~ 244 (260)
+++.+-|-|+.|.++.+..... +...+|. ...++.+|+||+....- .+++...|.+|+..
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 3778889999999988765544 4444553 35667899999866542 56788888888753
No 225
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.27 E-value=0.1 Score=41.74 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHH--------HHHHHHHHHhh-c--CCceEEEEeChhhHHHHHH
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW--------ASQLNDFCKDV-V--KDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~--~~~~~lvGhS~Gg~~a~~~ 70 (260)
.|++||.+++-|- ||..+.......+. .....+.++ +.--+++++.+ + .+.-+..|.|-||.-++..
T Consensus 55 ~~~~G~A~~~TD~-Gh~~~~~~~~~~~~-~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 55 ALARGYATASTDS-GHQGSAGSDDASFG-NNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhcCeEEEEecC-CCCCCccccccccc-CCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 3678999999884 56544331000000 111122222 22233444444 2 3467899999999999999
Q ss_pred HhhCccchhhceEeccCcccc
Q 024971 71 AVMEPEICRGMILLNISLRML 91 (260)
Q Consensus 71 a~~~p~~v~~lvl~~~~~~~~ 91 (260)
|.+||+.++|++.-+|.....
T Consensus 133 AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 133 AQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHhChhhcCeEEeCCchHHHH
Confidence 999999999999999987543
No 226
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.78 Score=34.97 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhcc----CCCccEEEeCCCCCCcchh-chhHHHHHHHHhhhhcccc
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQVS-LYLSLSSACLHTLSYLHTC 248 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~~-~p~~~~~~i~~~l~~~~~~ 248 (260)
..+.+.+++..|.++|....+.+.+. .-+++-+-+.++-|..+.. .|....+...+|++...+.
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~ 293 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISS 293 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccc
Confidence 46778888999999998887776332 3345555667788976654 6999999999999877554
No 227
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=93.75 E-value=0.21 Score=35.73 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=27.0
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
|++-+|||+|+.+-+.+...++..-++-++++-.
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred CeeeeecccchHHHHHHhhhccCcccceEEEecC
Confidence 6788999999999998887776555677777753
No 228
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.07 E-value=0.17 Score=33.77 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=32.2
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceEeccCc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
....+-|-||||..|..+.-++|+.+.++|.+++..
T Consensus 101 gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvY 136 (227)
T COG4947 101 GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVY 136 (227)
T ss_pred CCccccccchhhhhhhhhheeChhHhhhheeeccee
Confidence 356677999999999999999999999999999864
No 229
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=92.99 E-value=0.23 Score=36.11 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
..++.+-|||+||.+|..+..++. +-.+.+-+|
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesP 307 (425)
T KOG4540|consen 275 DARIWLTGHSLGGAIASLLGIRFG--LPVVAFESP 307 (425)
T ss_pred CceEEEeccccchHHHHHhccccC--CceEEecCc
Confidence 347889999999999998887764 334444444
No 230
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=92.99 E-value=0.23 Score=36.11 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
..++.+-|||+||.+|..+..++. +-.+.+-+|
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesP 307 (425)
T COG5153 275 DARIWLTGHSLGGAIASLLGIRFG--LPVVAFESP 307 (425)
T ss_pred CceEEEeccccchHHHHHhccccC--CceEEecCc
Confidence 347889999999999998887764 334444444
No 231
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=92.84 E-value=0.2 Score=39.48 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=40.3
Q ss_pred ccHHHHH---HHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhh--CccchhhceEeccCc
Q 024971 34 YTFETWA---SQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM--EPEICRGMILLNISL 88 (260)
Q Consensus 34 ~~~~~~~---~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~--~p~~v~~lvl~~~~~ 88 (260)
..+.|++ +.+.+-|+++|.+ +|.|+|+|.||+.++.+.+. ....++++|+.++..
T Consensus 156 ~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 4455555 4556778888754 69999999999988877654 224588888888875
No 232
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.15 E-value=4.7 Score=32.27 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCC--ceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 38 TWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
.+.+-|.+.++.||.+ .++|-|.|||..-|+.+++... ..++|+--|.
T Consensus 340 ~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL 389 (511)
T TIGR03712 340 GIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPL 389 (511)
T ss_pred HHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcc
Confidence 3445566777888775 6899999999999999998753 2455554443
No 233
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=91.93 E-value=0.54 Score=37.25 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=50.1
Q ss_pred ccEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhh----Cc--
Q 024971 6 SHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVM----EP-- 75 (260)
Q Consensus 6 ~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~----~p-- 75 (260)
--.++-+|.| |.|.|-...+.+....+..+.++.-+.+..++++. ..++++|.|-|++|...-.+|.+ ..
T Consensus 117 ~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~ 196 (454)
T KOG1282|consen 117 EANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKC 196 (454)
T ss_pred cccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccc
Confidence 3578889988 88888654432111112223333333344444433 34689999999999776666643 21
Q ss_pred ----cchhhceEeccCccc
Q 024971 76 ----EICRGMILLNISLRM 90 (260)
Q Consensus 76 ----~~v~~lvl~~~~~~~ 90 (260)
-.++|+++-+|....
T Consensus 197 ~~~~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 197 CKPNINLKGYAIGNGLTDP 215 (454)
T ss_pred cCCcccceEEEecCcccCc
Confidence 236788877776543
No 234
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.64 Score=33.70 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHHhhc--CCceEEEEeChhhHHHHHHHhhCcc-chhhceEeccCcc
Q 024971 34 YTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNISLR 89 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~lvGhS~Gg~~a~~~a~~~p~-~v~~lvl~~~~~~ 89 (260)
..+.+.++.+.+.++... .+-++++|.|.||.++-.++...++ .|+.+|.++++-.
T Consensus 71 ~pl~~Qv~~~ce~v~~m~~lsqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gPha 129 (296)
T KOG2541|consen 71 MPLWEQVDVACEKVKQMPELSQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGPHA 129 (296)
T ss_pred ccHHHHHHHHHHHHhcchhccCceEEEEEccccHHHHHHHHhCCCCCcceeEeccCCcC
Confidence 345566665555555332 1358999999999999999887654 4889998887643
No 235
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=91.66 E-value=0.52 Score=41.77 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHHHhhcC-CceEEEEeChhhHHHHHHHhhCc--cchhhceEeccCcc
Q 024971 33 FYTFETWASQLNDFCKDVVK-DQAFFICNSIGGLVGLQAAVMEP--EICRGMILLNISLR 89 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~lvGhS~Gg~~a~~~a~~~p--~~v~~lvl~~~~~~ 89 (260)
..++++.+.....-++++.. .|+.++|+|+|+.++..+|.... +....+|++++.+.
T Consensus 2161 ~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2161 LDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCchH
Confidence 35788888877777777754 58999999999999999986543 23566999988754
No 236
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=91.36 E-value=0.34 Score=39.60 Aligned_cols=56 Identities=14% Similarity=-0.010 Sum_probs=38.5
Q ss_pred CccHHHHHH---HHHHHHHhhcC--CceEEEEeChhhHHHHHHHhhC--ccchhhceEeccCc
Q 024971 33 FYTFETWAS---QLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVME--PEICRGMILLNISL 88 (260)
Q Consensus 33 ~~~~~~~~~---~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~~--p~~v~~lvl~~~~~ 88 (260)
.+.+.|+.. .|.+-|..+|. ++|.|+|||.||..+...+..- ...++++|+.++..
T Consensus 183 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 183 NYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred hhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 455555554 45566666765 4799999999999887766542 24699999999854
No 237
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=90.92 E-value=0.14 Score=39.32 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc---CCceEEEEeChhhHHHHHHHhhCccchhhceEe
Q 024971 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (260)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~ 84 (260)
+-+.+++|-+|.|.+.+.. -...++++-+.|...+++.+. .++.+--|-|=||+.++.+=.-||+-|++.|..
T Consensus 90 NQl~vEhRfF~~SrP~p~D----W~~Lti~QAA~D~Hri~~A~K~iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaY 165 (448)
T PF05576_consen 90 NQLSVEHRFFGPSRPEPAD----WSYLTIWQAASDQHRIVQAFKPIYPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAY 165 (448)
T ss_pred ceEEEEEeeccCCCCCCCC----cccccHhHhhHHHHHHHHHHHhhccCCceecCcCCCceeEEEEeeeCCCCCCeeeee
Confidence 4577899999999776532 256789999999998888874 257788899999999998888899999998876
Q ss_pred ccCc
Q 024971 85 NISL 88 (260)
Q Consensus 85 ~~~~ 88 (260)
..+.
T Consensus 166 VAP~ 169 (448)
T PF05576_consen 166 VAPN 169 (448)
T ss_pred eccc
Confidence 6554
No 238
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=1.2 Score=33.37 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred cEEEEEcCC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh-------cCCceEEEEeChhhHHHHHHHhhCcc--
Q 024971 7 HRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVMEPE-- 76 (260)
Q Consensus 7 ~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvGhS~Gg~~a~~~a~~~p~-- 76 (260)
..++-+|-| |.|.|-..... .-..+.++.+.|+.++++.+ ...|++++..|+||-+|..++...-+
T Consensus 72 adllfvDnPVGaGfSyVdg~~----~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aI 147 (414)
T KOG1283|consen 72 ADLLFVDNPVGAGFSYVDGSS----AYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAI 147 (414)
T ss_pred ccEEEecCCCcCceeeecCcc----cccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHH
Confidence 456777776 78887544321 12346788899999999886 23489999999999999888764322
Q ss_pred -------chhhceEeccCcc
Q 024971 77 -------ICRGMILLNISLR 89 (260)
Q Consensus 77 -------~v~~lvl~~~~~~ 89 (260)
.+.+++|=++.+.
T Consensus 148 k~G~i~~nf~~VaLGDSWIS 167 (414)
T KOG1283|consen 148 KRGEIKLNFIGVALGDSWIS 167 (414)
T ss_pred hcCceeecceeEEccCcccC
Confidence 2456666666553
No 239
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=87.86 E-value=0.5 Score=35.84 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHhhcCCceEEEEeChhhHHHHHHHhh
Q 024971 44 NDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
.++++..|+++-.++|||+|=+.|+.++..
T Consensus 75 ~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 75 ARLLRSWGIKPDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp HHHHHHTTHCESEEEESTTHHHHHHHHTTS
T ss_pred hhhhcccccccceeeccchhhHHHHHHCCc
Confidence 455677788899999999999888877654
No 240
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.14 E-value=0.69 Score=36.81 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=30.9
Q ss_pred hcCCceEEEEeChhhHHHHHHHhhC-----ccchhhceEeccCcc
Q 024971 50 VVKDQAFFICNSIGGLVGLQAAVME-----PEICRGMILLNISLR 89 (260)
Q Consensus 50 ~~~~~~~lvGhS~Gg~~a~~~a~~~-----p~~v~~lvl~~~~~~ 89 (260)
.|.+|+.|||+|.|+-+...+...- -..|..+++++.+..
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~ 488 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVP 488 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCcc
Confidence 4778999999999999988665432 234888999988753
No 241
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=86.58 E-value=0.97 Score=33.85 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 44 NDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
.++++..|+++-.++|||+|-..|+.++...
T Consensus 73 ~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag~~ 103 (298)
T smart00827 73 ARLWRSWGVRPDAVVGHSLGEIAAAYVAGVL 103 (298)
T ss_pred HHHHHHcCCcccEEEecCHHHHHHHHHhCCC
Confidence 3556777889999999999999988777543
No 242
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=85.95 E-value=1.1 Score=33.53 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=24.7
Q ss_pred HHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 44 NDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
.++++..+.++..++|||+|-..|+.++...
T Consensus 67 ~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~~ 97 (295)
T TIGR03131 67 WRALLALLPRPSAVAGYSVGEYAAAVVAGVL 97 (295)
T ss_pred HHHHHhcCCCCcEEeecCHHHHHHHHHhCCC
Confidence 4556667888999999999999888877543
No 243
>PRK10279 hypothetical protein; Provisional
Probab=85.75 E-value=1.2 Score=33.47 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchh
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~ 79 (260)
+.+.++..++..-.++|.|+|+.++..||....+.+.
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~~~l~ 59 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALE 59 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCChHHHH
Confidence 4455666788888899999999999999976544333
No 244
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=83.51 E-value=1.5 Score=32.62 Aligned_cols=30 Identities=23% Similarity=0.048 Sum_probs=23.6
Q ss_pred HHHHhhc-CCceEEEEeChhhHHHHHHHhhC
Q 024971 45 DFCKDVV-KDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 45 ~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
..++..+ +++..++|||+|=+.|+.++...
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~l 104 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAAGAL 104 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHhCCC
Confidence 3445556 88999999999999888887654
No 245
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=83.26 E-value=2.1 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+.+.++..++..-.++|.|+|+.++..+|..+
T Consensus 33 vL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 33 VIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 44555666777778899999999999999864
No 246
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=82.72 E-value=0.59 Score=36.00 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a 71 (260)
.++++.+.+....++++..+|||.||.++..+.
T Consensus 136 la~~~~e~~~~~si~kISfvghSLGGLvar~AI 168 (405)
T KOG4372|consen 136 LAEEVKETLYDYSIEKISFVGHSLGGLVARYAI 168 (405)
T ss_pred cHHHHhhhhhccccceeeeeeeecCCeeeeEEE
Confidence 344455555555578999999999999876543
No 247
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=82.40 E-value=2.5 Score=28.70 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhCc
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+.+.++..+...-.+.|-|.|+.++..++...+
T Consensus 16 vl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 16 VAKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 344445557777789999999999999998654
No 248
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=81.97 E-value=7.3 Score=27.39 Aligned_cols=52 Identities=13% Similarity=-0.076 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHHHHhhcCCceEEEEeCh----hhHHHHHHHhhCc-cchhhceEe
Q 024971 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI----GGLVGLQAAVMEP-EICRGMILL 84 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~----Gg~~a~~~a~~~p-~~v~~lvl~ 84 (260)
..++.+.+++.+.++++..+ -.++++|+|. |.-++-++|++.. ..+..++-+
T Consensus 89 ~~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l 145 (202)
T cd01714 89 AGADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKI 145 (202)
T ss_pred cCCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEE
Confidence 35678899999999998877 5789999998 8888888887642 234444443
No 249
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=81.97 E-value=3.1 Score=32.48 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcch-----hchhHHHHHHHHhh
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQV-----SLYLSLSSACLHTL 242 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-----~~p~~~~~~i~~~l 242 (260)
.-.+++|+|++|++..... .+.+-..++.+.+.||++|..-+ +..++....|.+|.
T Consensus 351 ~~rmlFVYG~nDPW~A~~f--~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~Wa 411 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEPF--RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWA 411 (448)
T ss_pred CCeEEEEeCCCCCcccCcc--ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHc
Confidence 3569999999999764221 12222345677788999996543 33445556666665
No 250
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=80.71 E-value=3.1 Score=28.87 Aligned_cols=31 Identities=10% Similarity=-0.107 Sum_probs=23.8
Q ss_pred HHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 44 NDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+.++..+...-.++|-|.||.+|..++...
T Consensus 18 l~~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 18 LKALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 3344455666678999999999999999754
No 251
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=79.98 E-value=3.4 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+.+.++..++..=.+.|.|+|+.++..+|...
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 44555666777667889999999999999764
No 252
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=79.77 E-value=3.1 Score=31.46 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhCc
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+.+.++..++..-.+.|-|+|+.++..+|....
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCCC
Confidence 456667778888899999999999999998643
No 253
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=79.73 E-value=3.8 Score=29.27 Aligned_cols=30 Identities=20% Similarity=0.015 Sum_probs=23.4
Q ss_pred HHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 45 ~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+.++..+.+.-.++|-|.|+.++..+|...
T Consensus 20 ~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 20 AALLEMGLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHHHcCCCceEEEEeCHHHHHHHHHHcCC
Confidence 344445667778999999999999999754
No 254
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=79.40 E-value=2.4 Score=34.28 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCCEEEEecCCCCCCChHHHHH----hhccCC--------CccEEEeCCCCCCcchh--chhHHHHHHHHhhhh
Q 024971 183 QVKCPVLIAWGDKDPWEPIELGRA----YGNFDS--------VEDFIVLPNVGHCPQVS--LYLSLSSACLHTLSY 244 (260)
Q Consensus 183 ~i~~P~l~i~g~~D~~~~~~~~~~----~~~~~~--------~~~~~~~~~~gH~~~~~--~p~~~~~~i~~~l~~ 244 (260)
+---.+++.||..|.++++..... +.+..+ -.++..+||.+|+.--. .+-.....|.+|++.
T Consensus 351 ~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 351 ARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred hcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 335789999999999998765543 223222 13688899999985533 344566677777764
No 255
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=78.85 E-value=2.8 Score=33.24 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=27.1
Q ss_pred HHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 45 ~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
..+...++.+=++.|-|.|+.+|..++...++.+..+
T Consensus 93 kaL~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~ 129 (421)
T cd07230 93 KALFEANLLPRIISGSSAGSIVAAILCTHTDEEIPEL 129 (421)
T ss_pred HHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 3333345666689999999999999998776665443
No 256
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=78.47 E-value=2.9 Score=34.29 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=25.6
Q ss_pred HHHH-HhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 44 NDFC-KDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 44 ~~~~-~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+++ +..|++|-.++|||+|=+.|+..|.-.
T Consensus 255 a~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 255 TQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 3445 577899999999999999999888765
No 257
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=77.50 E-value=8.9 Score=23.41 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCceEEEEeChhh--HHHHHHHhhCccchhhceE
Q 024971 40 ASQLNDFCKDVVKDQAFFICNSIGG--LVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lvGhS~Gg--~~a~~~a~~~p~~v~~lvl 83 (260)
...+..+++.+...++++||-|--. -+-..+|.++|++|.++.+
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 4456778888888899999977433 3444577889999888754
No 258
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=76.37 E-value=3.9 Score=32.00 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=28.1
Q ss_pred HHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhce
Q 024971 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 45 ~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
..+...+..+=++.|-|.|+.+|..+|...++.+..+.
T Consensus 103 kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l 140 (391)
T cd07229 103 KALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFL 140 (391)
T ss_pred HHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHH
Confidence 33344466677899999999999999997666555554
No 259
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=76.25 E-value=4.1 Score=30.79 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=25.8
Q ss_pred HHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 46 FCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 46 ~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
.+...+..+-++.|-|.|+.+|..++...++.+..+
T Consensus 89 aL~e~gl~p~~i~GsSaGAivaa~~~~~t~~El~~~ 124 (323)
T cd07231 89 TLVEHQLLPRVIAGSSVGSIVCAIIATRTDEELQSF 124 (323)
T ss_pred HHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 334446667789999999999999988655444433
No 260
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=76.17 E-value=12 Score=24.85 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
++.+|-.|++.|.+|= .++-+++++.+..+-+ .|.+=.++||-|.|=--++..
T Consensus 63 ~i~~~~~vi~Ld~~Gk---------------~~sSe~fA~~l~~~~~-~G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 63 AIPKGSYVVLLDIRGK---------------ALSSEEFADFLERLRD-DGRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred hcCCCCeEEEEecCCC---------------cCChHHHHHHHHHHHh-cCCeEEEEEeCcccCCHHHHH
Confidence 3567778899998864 3455677766655433 343345788999885554443
No 261
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=75.33 E-value=4.2 Score=32.16 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=27.9
Q ss_pred HHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhce
Q 024971 46 FCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 46 ~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
.+...+..+=++.|.|.|+.+|..++...++.+..++
T Consensus 88 aL~e~gllp~iI~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 88 ALLDADLLPNVISGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred HHHhCCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHH
Confidence 3333466677899999999999999987776665553
No 262
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=75.12 E-value=5.7 Score=28.21 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhhCc
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+.+.+...+...-.+.|.|.|+.+|..++...+
T Consensus 16 vl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 344455556666688999999999999998775
No 263
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=75.10 E-value=6.1 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=23.3
Q ss_pred HHHHhhcCCceEEEEeChhhHHHHHHHhhCc
Q 024971 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 45 ~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+.++..+...=.+.|-|.|+.++..++...+
T Consensus 20 ~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 20 RALEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 3344456666678899999999999987654
No 264
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=74.87 E-value=12 Score=30.96 Aligned_cols=57 Identities=7% Similarity=-0.083 Sum_probs=37.8
Q ss_pred CCccHHHHHHH---HHHHHHhhcC--CceEEEEeChhhHHHHHHHhh--CccchhhceEeccCc
Q 024971 32 PFYTFETWASQ---LNDFCKDVVK--DQAFFICNSIGGLVGLQAAVM--EPEICRGMILLNISL 88 (260)
Q Consensus 32 ~~~~~~~~~~~---~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~~--~p~~v~~lvl~~~~~ 88 (260)
..+.+.|+... +..-|...|. +++.++|||.||..+..+... ....+.++|.+++..
T Consensus 169 gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 169 GNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 34555555554 4455555654 579999999999998776642 124577777777754
No 265
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=71.69 E-value=8.7 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=22.5
Q ss_pred HHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 45 ~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
..++..+...-.++|-|.|+.+|..++...
T Consensus 20 ~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 20 KALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 334444655668899999999999998654
No 266
>COG0218 Predicted GTPase [General function prediction only]
Probab=69.16 E-value=6.2 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.5
Q ss_pred CCCCCCEEEEecCCCCCCChHHH
Q 024971 182 PQVKCPVLIAWGDKDPWEPIELG 204 (260)
Q Consensus 182 ~~i~~P~l~i~g~~D~~~~~~~~ 204 (260)
....+|++++.-.-|.+-..+..
T Consensus 132 ~~~~i~~~vv~tK~DKi~~~~~~ 154 (200)
T COG0218 132 LELGIPVIVVLTKADKLKKSERN 154 (200)
T ss_pred HHcCCCeEEEEEccccCChhHHH
Confidence 34568999999999998765543
No 267
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=66.98 E-value=4.8 Score=26.98 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=29.0
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCccHHHHHHHH----HHHHHhhc----CCceEEEEeChhhH
Q 024971 12 IDLIGYGYSDKPNPRDFFDKPFYTFETWASQL----NDFCKDVV----KDQAFFICNSIGGL 65 (260)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~lvGhS~Gg~ 65 (260)
+-+-|||........ -..++.++++.-+ ..+.+..+ .+++.|+|-|++..
T Consensus 59 w~lVGHG~~~~~~~~----l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 59 WQLVGHGRDEFNNQT----LAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEE--EESSTSSSE----ETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEEEeCCCcCCCce----eCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 345689987222211 2467888999888 34444442 35799999999887
No 268
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=65.57 E-value=12 Score=27.63 Aligned_cols=33 Identities=15% Similarity=-0.047 Sum_probs=23.5
Q ss_pred HHHHhhcCC-ceEEEEeChhhHHHHHHHhhCccc
Q 024971 45 DFCKDVVKD-QAFFICNSIGGLVGLQAAVMEPEI 77 (260)
Q Consensus 45 ~~~~~~~~~-~~~lvGhS~Gg~~a~~~a~~~p~~ 77 (260)
..+...+.. .=.++|.|.|+.++..++...+.+
T Consensus 18 ~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 18 DAFLEAGIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 334444555 447889999999999998876543
No 269
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=65.06 E-value=18 Score=24.23 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhH
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGL 65 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~ 65 (260)
+.++-.+++.|-.|- .++-+++++.+......-..+=+++||-+.|=.
T Consensus 64 i~~~~~~i~Ld~~Gk---------------~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~ 111 (155)
T PF02590_consen 64 IPPNDYVILLDERGK---------------QLSSEEFAKKLERWMNQGKSDIVFIIGGADGLS 111 (155)
T ss_dssp SHTTSEEEEE-TTSE---------------E--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--
T ss_pred ccCCCEEEEEcCCCc---------------cCChHHHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 345667788887654 456678888877776653334578899999843
No 270
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=63.82 E-value=17 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.3
Q ss_pred EEEEeChhhHHHHHHHhhC
Q 024971 56 FFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+.|.|+||.+|..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 4679999999999999754
No 271
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=63.68 E-value=36 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHH-Hhh-cCCceEEEEeChhhHHHHHHHhh
Q 024971 34 YTFETWASQLNDFC-KDV-VKDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~-~~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
..+++-+.+....+ +.. ..++++++|.|-|+..|-.+|..
T Consensus 71 ~g~~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 71 WGIEARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred cchHHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 34555554443333 444 23578999999999999988854
No 272
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=63.53 E-value=14 Score=26.67 Aligned_cols=33 Identities=12% Similarity=-0.064 Sum_probs=23.6
Q ss_pred HHHHHHhhcCC--ceEEEEeChhhHHHHHHHhhCc
Q 024971 43 LNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 43 ~~~~~~~~~~~--~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
+.+.+...++. .-.+.|-|.|+.++..++...+
T Consensus 17 Vl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 33444444554 3479999999999999998654
No 273
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.11 E-value=14 Score=27.44 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=25.9
Q ss_pred ceEEEEeChhhHHHHHHHhh---CccchhhceEeccCc
Q 024971 54 QAFFICNSIGGLVGLQAAVM---EPEICRGMILLNISL 88 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~---~p~~v~~lvl~~~~~ 88 (260)
++++.|.|+|+.-+...-.. .-+++.+.++.+|+.
T Consensus 110 kL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~ 147 (289)
T PF10081_consen 110 KLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPF 147 (289)
T ss_pred eEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCC
Confidence 69999999998766654322 235689999999864
No 274
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=60.98 E-value=11 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.8
Q ss_pred CCceEEEEeChhhH
Q 024971 52 KDQAFFICNSIGGL 65 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~ 65 (260)
.+.++++|||+|..
T Consensus 234 i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 234 IDEIIIYGHSLGEV 247 (270)
T ss_pred CCEEEEEeCCCchh
Confidence 46799999999975
No 275
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=60.09 E-value=16 Score=26.64 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEEeChhhHHHHHHHhhCccch
Q 024971 56 FFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+.|-|.|+.++..++. .|+++
T Consensus 34 ~i~GtSaGAl~aa~~a~-~~~~~ 55 (246)
T cd07222 34 RFAGASAGSLVAAVLLT-APEKI 55 (246)
T ss_pred EEEEECHHHHHHHHHhc-ChHHH
Confidence 78999999999999984 34443
No 276
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=59.70 E-value=17 Score=27.36 Aligned_cols=29 Identities=14% Similarity=-0.044 Sum_probs=22.0
Q ss_pred hcCCceEEEEeChhhHHHHHHHhhCccch
Q 024971 50 VVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (260)
Q Consensus 50 ~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v 78 (260)
.+..+-++.|.|.|+.+|..++....+.+
T Consensus 94 ~~l~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 94 QDLLPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred cCCCCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 35556689999999999999987644333
No 277
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=58.77 E-value=24 Score=20.31 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=17.8
Q ss_pred cCCceEEEEeChhhHHHHHHHhhC
Q 024971 51 VKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+.+++.++|-|.|=.+|.++++.+
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCceEEEEecCCcccHHHHHHHHh
Confidence 446889999999988888777654
No 278
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=58.42 E-value=17 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.4
Q ss_pred eEEEEeChhhHHHHHHHhhCc-cchhhceEeccCcccc
Q 024971 55 AFFICNSIGGLVGLQAAVMEP-EICRGMILLNISLRML 91 (260)
Q Consensus 55 ~~lvGhS~Gg~~a~~~a~~~p-~~v~~lvl~~~~~~~~ 91 (260)
++--+.|-||..++..|.+.- ..|++++...|.....
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~ 324 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLP 324 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCC
Confidence 344478999999999998754 3589999998876543
No 279
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=57.56 E-value=21 Score=26.06 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=17.8
Q ss_pred EEEEeChhhHHHHHHHhhCc
Q 024971 56 FFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~p 75 (260)
.++|-|.|+.++..++...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 78999999999999998654
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.69 E-value=27 Score=24.43 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=39.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCcc--chhhce
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGMI 82 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~--~v~~lv 82 (260)
++++++.+|-+|.... -.+..+.+.++++......++++=-+..+.-.+..+..+-+ .+.++|
T Consensus 82 ~~~D~vlIDT~Gr~~~---------------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR---------------DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLI 146 (196)
T ss_dssp TTSSEEEEEE-SSSST---------------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEE
T ss_pred cCCCEEEEecCCcchh---------------hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEE
Confidence 4689999999887522 23556667777777766667776555555555554443322 256666
Q ss_pred Ee
Q 024971 83 LL 84 (260)
Q Consensus 83 l~ 84 (260)
+-
T Consensus 147 lT 148 (196)
T PF00448_consen 147 LT 148 (196)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 281
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=55.90 E-value=49 Score=22.29 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCceEEEEeChhh
Q 024971 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGG 64 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg 64 (260)
.+-+++++.+......-..+-+++||-+.|=
T Consensus 80 ~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 80 LSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 4556667666655332222346677777664
No 282
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=55.17 E-value=20 Score=18.41 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHHHHhhcCCceEEEE-eChh
Q 024971 32 PFYTFETWASQLNDFCKDVVKDQAFFIC-NSIG 63 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~lvG-hS~G 63 (260)
..++.+.|..|+...|..+.+..+.++| |..|
T Consensus 4 ~~w~PqSWM~DLrS~I~~~~I~ql~ipGsHns~ 36 (51)
T PF03490_consen 4 TAWHPQSWMSDLRSSIGEMAITQLFIPGSHNSG 36 (51)
T ss_pred cccCcHHHHHHHHHHHhcceeeeEEeccccccc
Confidence 3567788999999999999998999887 4433
No 283
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=54.88 E-value=16 Score=27.75 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.8
Q ss_pred cCCceEEEEeChhhHHHHHHHh
Q 024971 51 VKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
+.++.++.|||+|=+.|+.++.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4678899999999999888776
No 284
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=54.75 E-value=34 Score=25.77 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=13.5
Q ss_pred ccEEEEEcCCCCCCCCCCC
Q 024971 6 SHRVYSIDLIGYGYSDKPN 24 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~ 24 (260)
+-.+|++| ||||..++..
T Consensus 55 ~~~~IvID-pGHGG~DpGA 72 (287)
T PRK10319 55 GKRVVMLD-PGHGGIDTGA 72 (287)
T ss_pred CCeEEEEE-CCCCCCCCCC
Confidence 45688999 7999876544
No 285
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=53.19 E-value=27 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.039 Sum_probs=17.3
Q ss_pred EEEEeChhhHHHHHHHhhCc
Q 024971 56 FFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~p 75 (260)
.+.|-|.|+.+|..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 48999999999999987654
No 286
>PF15566 Imm18: Immunity protein 18
Probab=53.03 E-value=24 Score=18.48 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeChhhHH
Q 024971 36 FETWASQLNDFCKDVVKDQAFFICNSIGGLV 66 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~ 66 (260)
++-++.++..+......+.++++--||||.-
T Consensus 4 L~~L~~~l~~L~~~~~~~H~Hlmtp~WgG~E 34 (52)
T PF15566_consen 4 LELLQDQLENLQEKEPFDHEHLMTPDWGGEE 34 (52)
T ss_pred HHHHHHHHHHHHhccCCCCceeccccccccc
Confidence 4566777777777766678999999999953
No 287
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=52.70 E-value=29 Score=23.12 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=19.6
Q ss_pred HHHHhhcC--CceEEEEeChhhHHHHHHH
Q 024971 45 DFCKDVVK--DQAFFICNSIGGLVGLQAA 71 (260)
Q Consensus 45 ~~~~~~~~--~~~~lvGhS~Gg~~a~~~a 71 (260)
..+...+. ..-++.|.|.|+.++..++
T Consensus 18 ~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 18 SALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 33344444 4457889999999999998
No 288
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=52.15 E-value=43 Score=28.01 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhh--cCCceEEEEe------ChhhHHHHHHHhhCccchhhceEeccC
Q 024971 39 WASQLNDFCKDV--VKDQAFFICN------SIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 39 ~~~~~~~~~~~~--~~~~~~lvGh------S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
-++++...++.+ ..++++++|| +.|+.+++..-+..-.+ .+.++++|.
T Consensus 322 RaRvis~al~d~i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~ 377 (655)
T COG3887 322 RARVISTALSDIIKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPE 377 (655)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECcc
Confidence 344444333333 2579999999 68999998765544333 567777764
No 289
>PRK14974 cell division protein FtsY; Provisional
Probab=51.95 E-value=55 Score=25.35 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCcc--chhhc
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGM 81 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~--~v~~l 81 (260)
+.++.++.+|-+|....+ ..+.+.+..+.+......+++|.-+.-|.-+...+..+.+ .+.++
T Consensus 220 ~~~~DvVLIDTaGr~~~~---------------~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~gi 284 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTD---------------ANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGV 284 (336)
T ss_pred hCCCCEEEEECCCccCCc---------------HHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEE
Confidence 357889999988765432 2344455555555555667777766666666655554432 35555
Q ss_pred eEe
Q 024971 82 ILL 84 (260)
Q Consensus 82 vl~ 84 (260)
|+.
T Consensus 285 IlT 287 (336)
T PRK14974 285 ILT 287 (336)
T ss_pred EEe
Confidence 544
No 290
>PRK04148 hypothetical protein; Provisional
Probab=51.10 E-value=37 Score=22.14 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
++++.+.+.+......++..||-.+|..+|..++... .-++.++-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G----~~ViaIDi 47 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG----FDVIVIDI 47 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC----CEEEEEEC
Confidence 3444444433333335699999998888888777532 24555554
No 291
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=50.32 E-value=32 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.4
Q ss_pred ceEEEEeChhhHHHHHHHhhCc
Q 024971 54 QAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
.-.++|-|.|+.++..++...+
T Consensus 33 ~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 33 ARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CCEEEEEcHHHHHHHHHHhCCC
Confidence 3468999999999999987654
No 292
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=49.80 E-value=31 Score=25.28 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=17.9
Q ss_pred eEEEEeChhhHHHHHHHhhCc
Q 024971 55 AFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 55 ~~lvGhS~Gg~~a~~~a~~~p 75 (260)
-.+.|-|.|+.++..++...+
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 38 RKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCCC
Confidence 468899999999999987654
No 293
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=49.00 E-value=29 Score=17.51 Aligned_cols=33 Identities=18% Similarity=-0.018 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK 48 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (260)
..+|.+..+|+||+-. ...|+++..+.+.+.+.
T Consensus 11 ~~~y~~~~pdlpg~~t------------~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 11 DGGYVAYFPDLPGCFT------------QGDTLEEALENAKEALE 43 (48)
T ss_dssp SSSEEEEETTCCTCEE------------EESSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccChhh------------cCCCHHHHHHHHHHHHH
Confidence 3579999999998751 23467777776666654
No 294
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=48.04 E-value=83 Score=21.28 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=19.3
Q ss_pred CCceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
.+++.++|-|..|..-+.++...++.+..++=.+|
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 35799999999999989888776666666654444
No 295
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=47.25 E-value=24 Score=28.68 Aligned_cols=28 Identities=11% Similarity=-0.091 Sum_probs=23.3
Q ss_pred EEEeCCCCCCcchhchhHHHHHHHHhhhh
Q 024971 216 FIVLPNVGHCPQVSLYLSLSSACLHTLSY 244 (260)
Q Consensus 216 ~~~~~~~gH~~~~~~p~~~~~~i~~~l~~ 244 (260)
+.+++ +||++..++|+...+.+..|+..
T Consensus 463 ~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 463 LRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred EEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 44555 89999999999999999988754
No 296
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=46.13 E-value=20 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.0
Q ss_pred EEEEeChhhHHHHHHHhhC
Q 024971 56 FFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+.|.|.||.+|..++..+
T Consensus 44 lIaGTStGgIIAa~la~g~ 62 (344)
T cd07217 44 FVGGTSTGSIIAACIALGM 62 (344)
T ss_pred EEEEecHHHHHHHHHHcCC
Confidence 4679999999999998643
No 297
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=44.85 E-value=96 Score=23.14 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=41.8
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhch-hHHHHHHHHhhhhcc
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLY-LSLSSACLHTLSYLH 246 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p-~~~~~~i~~~l~~~~ 246 (260)
+.|+.++- .-+--....+++.+.+|+.+++.+-+..++++-+++ +++.+...+.++++.
T Consensus 5 ~~~IgvFD---SGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~ 64 (269)
T COG0796 5 QPPIGVFD---SGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLL 64 (269)
T ss_pred CCeEEEEE---CCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677773 334456788899999999999999889999997764 445555555555543
No 298
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=44.64 E-value=24 Score=35.48 Aligned_cols=29 Identities=21% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 44 NDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
..+++..|+++-.++|||+|=+.|+.+|.
T Consensus 665 ~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAG 693 (2582)
T TIGR02813 665 YKLFTQAGFKADMTAGHSFGELSALCAAG 693 (2582)
T ss_pred HHHHHHcCCccceeecCCHHHHHHHHHhC
Confidence 34566778889999999999988887764
No 299
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=44.27 E-value=25 Score=28.20 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=23.0
Q ss_pred CCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcc
Q 024971 186 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 186 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 227 (260)
.-+++..|+.|++........ ........+|+|++|..-
T Consensus 377 tnviFtNG~~DPW~~lgv~~~---~~~~~~~~~I~g~~Hc~D 415 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGVTSD---SSDSVPAIVIPGGAHCSD 415 (434)
T ss_dssp -SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGG
T ss_pred CeEEeeCCCCCCcccccCCCC---CCCCcccEEECCCeeecc
Confidence 579999999999876553222 223345578899999743
No 300
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=44.11 E-value=38 Score=27.66 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcC--CceEEEEeChhhHHHHHHHh--hCccchhhceEeccCccc
Q 024971 41 SQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAV--MEPEICRGMILLNISLRM 90 (260)
Q Consensus 41 ~~~~~~~~~~~~--~~~~lvGhS~Gg~~a~~~a~--~~p~~v~~lvl~~~~~~~ 90 (260)
..+.+-+..+|. +++.|+|.|.|+.-...-.. .....++..|+-++....
T Consensus 204 ~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 204 QWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred HHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCCC
Confidence 455666667765 47999999999875432221 112347777777776543
No 301
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=43.59 E-value=27 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=15.6
Q ss_pred EEEEeChhhHHHHHHHhhC
Q 024971 56 FFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~ 74 (260)
.++|||+|=+.|+.++...
T Consensus 127 ~~~GHSlGE~aA~~~AG~l 145 (343)
T PLN02752 127 VCAGLSLGEYTALVFAGAL 145 (343)
T ss_pred eeeeccHHHHHHHHHhCCC
Confidence 5799999999988887543
No 302
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=43.34 E-value=21 Score=27.07 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.0
Q ss_pred EEEEeChhhHHHHHHHh
Q 024971 56 FFICNSIGGLVGLQAAV 72 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~ 72 (260)
.+.|.|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 47799999999999886
No 303
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=42.96 E-value=24 Score=26.48 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.5
Q ss_pred EEEEeChhhHHHHHHHhhC
Q 024971 56 FFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~~ 74 (260)
.+.|.|.||.+|+.++...
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 5779999999999998754
No 304
>PF03283 PAE: Pectinacetylesterase
Probab=41.48 E-value=53 Score=25.76 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCceEEEEeChhhHHHHHHHh----hCccchhhceEeccC
Q 024971 52 KDQAFFICNSIGGLVGLQAAV----MEPEICRGMILLNIS 87 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~----~~p~~v~~lvl~~~~ 87 (260)
.++++|-|.|.||.-++..+. ..|..++-..+.+..
T Consensus 155 a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG 194 (361)
T PF03283_consen 155 AKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSG 194 (361)
T ss_pred cceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccc
Confidence 367999999999998886553 345433333344443
No 305
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=41.31 E-value=41 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=16.8
Q ss_pred CceEEEEeChhhHHHHHHHhh
Q 024971 53 DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
..-.+.|-|.||.+|+.++..
T Consensus 27 ~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 27 RFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp T-SEEEEECCHHHHHHHHHTC
T ss_pred CccEEEEcChhhhhHHHHHhC
Confidence 345788999999999888765
No 306
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=41.23 E-value=52 Score=20.84 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHHHH
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~ 68 (260)
+....+.-.+..++.+.++++||+--|.+..
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a 74 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA 74 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH
Confidence 3455666677888999999999976665543
No 307
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=41.21 E-value=63 Score=23.76 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=36.5
Q ss_pred hHHHHHhhccCCCccEEEeCCCCCCcchhc-hhHHHHHHHHhhhhcc
Q 024971 201 IELGRAYGNFDSVEDFIVLPNVGHCPQVSL-YLSLSSACLHTLSYLH 246 (260)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-p~~~~~~i~~~l~~~~ 246 (260)
....+.+.+..|+.+++.+-+..|+++-++ ++++.+.+.+.++++.
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888899999999998999999775 5667777777777776
No 308
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.68 E-value=89 Score=25.25 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=39.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCcc--chhhce
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGMI 82 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~--~v~~lv 82 (260)
.+|.++.+|-+|.-.. -+.+.+.+..+.+......+++|--++-|.-+...+..+.+ .+.++|
T Consensus 181 ~~~DvViIDTaGr~~~---------------d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQ---------------EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred CCCCEEEEECCCCCcc---------------hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 4799999999985221 12344555555555555667777777777666666655432 245555
Q ss_pred E
Q 024971 83 L 83 (260)
Q Consensus 83 l 83 (260)
+
T Consensus 246 l 246 (429)
T TIGR01425 246 I 246 (429)
T ss_pred E
Confidence 4
No 309
>PRK00865 glutamate racemase; Provisional
Probab=40.56 E-value=59 Score=24.05 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=43.5
Q ss_pred CCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhc-hhHHHHHHHHhhhhcccc
Q 024971 186 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSL-YLSLSSACLHTLSYLHTC 248 (260)
Q Consensus 186 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-p~~~~~~i~~~l~~~~~~ 248 (260)
.|+.++-+ -+-.....+.+.+.+|+.+++.+-+..|+++-++ ++++.+.+.+-++++.+.
T Consensus 6 ~~IgvfDS---GiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~ 66 (261)
T PRK00865 6 APIGVFDS---GVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEY 66 (261)
T ss_pred CeEEEEEC---CccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 46666632 3445667888999999999999999999999765 556666666666666543
No 310
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.27 E-value=1.2e+02 Score=24.55 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=48.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccc--hhhce
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI--CRGMI 82 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~--v~~lv 82 (260)
.+|.|+.+|-.|.= .-=+++.+.+.++-+.+....+.+|--+|=|.-|...|..+.+. +.|+|
T Consensus 181 ~~~DvvIvDTAGRl---------------~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 181 EGYDVVIVDTAGRL---------------HIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred cCCCEEEEeCCCcc---------------cccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 46888888876642 12246677777887888888899999999999999999887664 56666
Q ss_pred Ee
Q 024971 83 LL 84 (260)
Q Consensus 83 l~ 84 (260)
+.
T Consensus 246 lT 247 (451)
T COG0541 246 LT 247 (451)
T ss_pred EE
Confidence 54
No 311
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=39.04 E-value=85 Score=25.50 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=12.1
Q ss_pred EEEEEcCCCCCCCCCCC
Q 024971 8 RVYSIDLIGYGYSDKPN 24 (260)
Q Consensus 8 ~v~~~D~~G~G~S~~~~ 24 (260)
-+|++| ||||..++..
T Consensus 192 ~vIvID-pGHGG~DpGA 207 (445)
T PRK10431 192 VIIAID-AGHGGQDPGA 207 (445)
T ss_pred eEEEEe-CCCCCCCCCC
Confidence 368888 8999887644
No 312
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.57 E-value=1.7e+02 Score=21.95 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=38.4
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEE-EeChhhHHHHHHHhhCc-cchhhce
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFI-CNSIGGLVGLQAAVMEP-EICRGMI 82 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv-GhS~Gg~~a~~~a~~~p-~~v~~lv 82 (260)
.++.++.+|-+|....+ ....+.+.++++......++|+ .-++++.-+...+.++. -.+.++|
T Consensus 153 ~~~D~ViIDt~Gr~~~~---------------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I 217 (270)
T PRK06731 153 ARVDYILIDTAGKNYRA---------------SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 217 (270)
T ss_pred CCCCEEEEECCCCCcCC---------------HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEE
Confidence 37899999999875322 1233344455555444455554 45677777777776653 2355555
Q ss_pred Ee
Q 024971 83 LL 84 (260)
Q Consensus 83 l~ 84 (260)
+-
T Consensus 218 ~T 219 (270)
T PRK06731 218 FT 219 (270)
T ss_pred EE
Confidence 43
No 313
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.08 E-value=71 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcC----CceEEEEeC--hhhHHHHHHHhh
Q 024971 40 ASQLNDFCKDVVK----DQAFFICNS--IGGLVGLQAAVM 73 (260)
Q Consensus 40 ~~~~~~~~~~~~~----~~~~lvGhS--~Gg~~a~~~a~~ 73 (260)
+..+.+++++.+. +++.++|.| ||..++..+..+
T Consensus 143 p~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 143 PSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 3456677777653 579999986 999999988764
No 314
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=37.82 E-value=1.3e+02 Score=22.12 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=31.2
Q ss_pred EEEecCCCCCCChHHHHHhhccC--CCccEEEeCCCCCCcchhchhHHHHHHHHhhhhcc
Q 024971 189 LIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLH 246 (260)
Q Consensus 189 l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~ 246 (260)
++|.|..|........+++.+.. ++.++.++|-++. .|++..+...+.++.+.
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~-----~~~~~~~~~~~~~~~lG 56 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRAGGEDAIIVIITSASE-----EPREVGERYITIFSRLG 56 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCC-----ChHHHHHHHHHHHHHcC
Confidence 56777777765555666655542 3457888887764 34444444444444443
No 315
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=37.29 E-value=75 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=14.2
Q ss_pred CccEEEEEcCCCCCCCC
Q 024971 5 KSHRVYSIDLIGYGYSD 21 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~ 21 (260)
.|..+..+|.||.+.+.
T Consensus 77 ~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 77 DGFKLNIIDTPGLLESV 93 (249)
T ss_pred CCeEEEEEECCCcCcch
Confidence 46788999999999774
No 316
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=37.07 E-value=59 Score=21.39 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChhhHH
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIGGLV 66 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~ 66 (260)
+....+.-.+..++.+.++++||+-=|.+
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~Cg~~ 69 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTDCGML 69 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecCCcce
Confidence 45556666778889999999999854443
No 317
>PRK12467 peptide synthase; Provisional
Probab=36.89 E-value=1.4e+02 Score=32.40 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=44.8
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhc-CCceEEEEeChhhHHHHHHHhh---Cccchh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVM---EPEICR 79 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvGhS~Gg~~a~~~a~~---~p~~v~ 79 (260)
..+..++.+..++.-.... ...+++.++....+.+.... ..+..+.|+|+||.++..++.. ..+.+.
T Consensus 3716 ~~~~~~~~l~~~~~~~d~~---------~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~ 3786 (3956)
T PRK12467 3716 EGDRHVLGLTCRHLLDDGW---------QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGGTLARLVAELLEREGESEA 3786 (3956)
T ss_pred CCCCcEEEEeccccccccC---------CccchHHHHHHHHHHHHHhccCCCeeeeeeecchHHHHHHHHHHHHcCCcee
Confidence 3455666666655432222 12366777766666665553 3578999999999999988764 233455
Q ss_pred hceEec
Q 024971 80 GMILLN 85 (260)
Q Consensus 80 ~lvl~~ 85 (260)
-+.+++
T Consensus 3787 ~~~~~~ 3792 (3956)
T PRK12467 3787 FLGLFD 3792 (3956)
T ss_pred EEEEEe
Confidence 444443
No 318
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.15 E-value=1.2e+02 Score=22.67 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.0
Q ss_pred CCccEEEEEcCCCCCCC
Q 024971 4 AKSHRVYSIDLIGYGYS 20 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S 20 (260)
.++|.++.+|-+|....
T Consensus 152 ~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HCCCCEEEEeCCCCCcc
Confidence 46899999999998654
No 319
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=35.90 E-value=1.3e+02 Score=22.56 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCCCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCC-CCCC-cchhchhHHHHHHHHhh
Q 024971 182 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHC-PQVSLYLSLSSACLHTL 242 (260)
Q Consensus 182 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~-~~~~~p~~~~~~i~~~l 242 (260)
....+|+.++.|++ ...++..+..|+.+.+.++. .|++ ...-.|++..+.|.+=.
T Consensus 144 g~~gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa 200 (270)
T cd08769 144 GEFGVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAV 200 (270)
T ss_pred hhcCCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHH
Confidence 34579999999965 23455555678888888764 4543 22334555555555444
No 320
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=35.73 E-value=1.2e+02 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=18.2
Q ss_pred CccHHHHHHHHHHHHHhhcCCceEEEEeChhhHH
Q 024971 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~ 66 (260)
..+-.++++.+....+. +.+-+++||-+.|=.-
T Consensus 77 ~~sS~~fA~~l~~~~~~-g~~i~FvIGGa~G~~~ 109 (153)
T TIGR00246 77 PWTTPQLADTLEKWKTD-GRDVTLLIGGPEGLSP 109 (153)
T ss_pred cCCHHHHHHHHHHHhcc-CCeEEEEEcCCCcCCH
Confidence 34555666666665333 2234567777766433
No 321
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.48 E-value=1.5e+02 Score=25.03 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCEEEEecCCCCCCC----h-HHHHHhhccCCCccEEEeCCCCCC----cchhchhHHHHHHHHhhhhccccccc
Q 024971 186 CPVLIAWGDKDPWEP----I-ELGRAYGNFDSVEDFIVLPNVGHC----PQVSLYLSLSSACLHTLSYLHTCRCY 251 (260)
Q Consensus 186 ~P~l~i~g~~D~~~~----~-~~~~~~~~~~~~~~~~~~~~~gH~----~~~~~p~~~~~~i~~~l~~~~~~~~~ 251 (260)
.|+++..+.+|..+. . +..++-.++...+++..++.+|-- +-...-+-+.+.|..-++.+++|.|.
T Consensus 899 ~P~FI~~~~~dI~TECKApEKEfaErqt~R~RPaRLIFYD~~G~~~GaGLC~KAfEH~Dd~Ie~~lrRIE~CpC~ 973 (1034)
T KOG4150|consen 899 VPTFITCNYSDIATECKAPEKEFAERQTQRYRPARLIFYDPGGTGIGAGLCPKAFEHLDDAIEDLLRRIEKCPCE 973 (1034)
T ss_pred cceEEecCchhhcccCCCchHHHHHhhhhccCcceEEEEcCCCCcccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 799999998886532 2 223333333445789988765542 33444556677888888999988875
No 322
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=35.10 E-value=72 Score=22.47 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHhhcCCceEEEE-eChhhHHHHHHHhhCccchhhceEeccC
Q 024971 45 DFCKDVVKDQAFFIC-NSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 45 ~~~~~~~~~~~~lvG-hS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
+..+.+...++.++| -.+|+.++..++.. -|..+++++.-
T Consensus 14 ~~q~~L~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D 54 (200)
T TIGR02354 14 KIVQKLEQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD 54 (200)
T ss_pred HHHHHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence 445666667899998 55888898888764 37788888875
No 323
>PF08197 TT_ORF2a: pORF2a truncated protein; InterPro: IPR013267 Most isolated ORF2 of TT virus (TTV) encode a 49 amino acid protein (pORF2a) because of an in-frame stop codon. ORF2s isolated from G1 TTV encode a 202 amino acid protein (pORF2ab) [].
Probab=34.72 E-value=34 Score=16.94 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.0
Q ss_pred EEEEEcCCCCCCC
Q 024971 8 RVYSIDLIGYGYS 20 (260)
Q Consensus 8 ~v~~~D~~G~G~S 20 (260)
.+-+-|+||+|..
T Consensus 36 airardwpg~gq~ 48 (49)
T PF08197_consen 36 AIRARDWPGYGQG 48 (49)
T ss_pred ceEeccCCCcCCC
Confidence 4667899999864
No 324
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=34.49 E-value=90 Score=23.50 Aligned_cols=47 Identities=19% Similarity=0.042 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCC---ceEEEEeChhhHHHHHHHhhCccchhhceEecc
Q 024971 39 WASQLNDFCKDVVKD---QAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~---~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 86 (260)
...-+..++++++.+ .+-=+|-+||++.. .+|.++..+|.|+.+...
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~-~aA~~y~v~V~GvTlS~~ 106 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAI-YAAEEYGVTVVGVTLSEE 106 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHH-HHHHHcCCEEEEeeCCHH
Confidence 334456677777654 45568999998654 566666666766665543
No 325
>PRK15219 carbonic anhydrase; Provisional
Probab=34.10 E-value=65 Score=23.64 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....+.-.+..++.+.++++|||-=|.+...+
T Consensus 129 ~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~ 160 (245)
T PRK15219 129 LLGSMEFACAVAGAKVVLVMGHTACGAVKGAI 160 (245)
T ss_pred hhhHHHHHHHHcCCCEEEEecCCcchHHHHHH
Confidence 44556667788899999999999766555443
No 326
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.65 E-value=1.3e+02 Score=19.21 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=38.2
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhhccc
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
++-..++.+..+.+.|.+..+.+....+.+ ++...---...+.|+.....+.+-++.++.
T Consensus 4 ~vtk~ivlapsa~vsp~elv~~l~~~~~Pv---tiKeTCfGaii~G~Ed~v~klveriR~~d~ 63 (142)
T COG4029 4 NVTKYIVLAPSAGVSPKELVQKLLELSPPV---TIKETCFGAIIDGPEDEVRKLVERIRELDG 63 (142)
T ss_pred cceEEEEEcCccCcChHHHHHHHHhcCCCe---EeeeeeeeeeecCcHHHHHHHHHHHHHhcc
Confidence 345577888888888888888887775543 333333334556677666666665655544
No 327
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=33.61 E-value=57 Score=26.68 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=25.8
Q ss_pred cCCceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 51 VKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
+.-|=++-|-|+||.+|..++.+.-+.++.+.-
T Consensus 200 dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~ 232 (543)
T KOG2214|consen 200 DLLPNIISGSSAGAIVASLVGVRSNEELKQLLT 232 (543)
T ss_pred cccchhhcCCchhHHHHHHHhhcchHHHHHHhc
Confidence 344667899999999999999887776776553
No 328
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=33.50 E-value=69 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHhhcCCce-----EEEEeChhhHHHHHHHhh
Q 024971 46 FCKDVVKDQA-----FFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 46 ~~~~~~~~~~-----~lvGhS~Gg~~a~~~a~~ 73 (260)
-++.+..+++ .+.|.|.||.+|..+...
T Consensus 438 kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k 470 (763)
T KOG4231|consen 438 KIEKLSGKPIHELFDLICGVSTGGILAIALGVK 470 (763)
T ss_pred HHHHhcCCcHHHHHHHHhccCchHHHHHHHHhc
Confidence 3444444554 377999999999988754
No 329
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=33.47 E-value=73 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.015 Sum_probs=22.3
Q ss_pred ceE-EEEeChhhHHHHHHHhhCccchhhce
Q 024971 54 QAF-FICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 54 ~~~-lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
++. ++|.|+|+.-+..+..+-+.+-++++
T Consensus 40 ~f~~~~GvSAGA~n~~aYls~Q~gra~~~~ 69 (292)
T COG4667 40 PFDLVVGVSAGALNLVAYLSKQRGRARRVI 69 (292)
T ss_pred CcCeeeeecHhHHhHHHHhhcCCchHHHHH
Confidence 444 66999999999999888777655544
No 330
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=1.2e+02 Score=21.60 Aligned_cols=59 Identities=14% Similarity=-0.050 Sum_probs=34.7
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeC
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS 61 (260)
.+.+.|-|+.+|-+|+-.-...-....+ .+..-.+.+++....++...+.+.+...|.|
T Consensus 17 ~~P~t~iVlRiDGr~Fhk~tk~l~FeKP-yD~~f~~lM~~tA~~lv~~~~~~i~LaYtfS 75 (249)
T COG4021 17 ILPQTYIVLRIDGRGFHKFTKFLDFEKP-YDERFLKLMNATAKNLVLKYGLDIILAYTFS 75 (249)
T ss_pred CCCCceEEEEecChhhhHHHhhcCcCCc-chHHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4567899999999887544322111000 1222344555566667888777666666666
No 331
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=33.30 E-value=30 Score=26.28 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.6
Q ss_pred EEEEeChhhHHHHHHHh
Q 024971 56 FFICNSIGGLVGLQAAV 72 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~ 72 (260)
.+.|.|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 56799999999998874
No 332
>PRK05665 amidotransferase; Provisional
Probab=33.20 E-value=89 Score=22.84 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHH
Q 024971 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a 71 (260)
+.-..|...+.++++..-....-++|.|+|..+...+.
T Consensus 71 ~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 71 FGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLL 108 (240)
T ss_pred cccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHh
Confidence 44456777777777766434456899999998876655
No 333
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=32.57 E-value=1.6e+02 Score=19.94 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=44.1
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhh
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLS 243 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~ 243 (260)
+.-++++..--|.-.+.+..+.+.+.+.+.++.++--+|..+.-++...+.+.+..++.
T Consensus 39 ~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~ 97 (160)
T PF12641_consen 39 DYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLP 97 (160)
T ss_pred CCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhc
Confidence 35678888878887777777777777777888888777777777777777777777664
No 334
>PRK02399 hypothetical protein; Provisional
Probab=32.57 E-value=1.5e+02 Score=23.77 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHHHhhCccchhhceEe
Q 024971 36 FETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~ 84 (260)
++.+++-+..+++.+ .+.-++-+|-|.|..++.......|--+-++++.
T Consensus 76 i~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVS 128 (406)
T PRK02399 76 MAAMAEGAAAFVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMVS 128 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEEE
Confidence 345555555565543 3456888999999999999998888666666544
No 335
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.50 E-value=37 Score=24.94 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.9
Q ss_pred EEEEeChhhHHHHHHHhh
Q 024971 56 FFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~ 73 (260)
.+.|.|.||.+|+.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 467999999999999876
No 336
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=32.24 E-value=92 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCh
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSI 62 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~ 62 (260)
+-.++...++++.+.+=+.++.+||
T Consensus 410 edhq~t~sLlrqVgYdv~~lFaysm 434 (552)
T KOG2492|consen 410 EDHQYTVSLLRQVGYDVVFLFAYSM 434 (552)
T ss_pred HHHHHHHHHHHHhccCeeeeEEeee
Confidence 3344455666666666666667776
No 337
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.71 E-value=1.9e+02 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=12.9
Q ss_pred CCccEEEEEcCCCCCC
Q 024971 4 AKSHRVYSIDLIGYGY 19 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~ 19 (260)
.++|.++.+|-+|...
T Consensus 180 ~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQ 195 (428)
T ss_pred hcCCCEEEEeCCCccc
Confidence 4678999999998754
No 338
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=31.67 E-value=87 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=17.7
Q ss_pred cCCceEEEEeChhhHHHHHHHh
Q 024971 51 VKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
+..--++.|.|+||.++..+|.
T Consensus 64 ~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 64 RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CCCCceEEeeCHHHHHHHHHHc
Confidence 3444578899999999998886
No 339
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=31.16 E-value=1e+02 Score=23.51 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEE
Q 024971 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFI 58 (260)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 58 (260)
-++++++|+..-+....... +.....+++++++.+.+.+++++..++++|
T Consensus 64 vlVvY~lP~RDC~a~~S~Ge-g~~~~~~Yk~wId~ia~~i~~~g~~~~vvI 113 (298)
T PF01341_consen 64 VLVVYNLPNRDCAAGASAGE-GADSLASYKEWIDPIAAGIKKYGDRRAVVI 113 (298)
T ss_dssp EEEE---TTCSTTSSSTSSS-GGTHHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEEeccCCCCccccccCCC-CCCchhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 56788888765432222100 001334556666666666666676666554
No 340
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=31.11 E-value=37 Score=26.41 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred EEEEeChhhHHHHHHHhh
Q 024971 56 FFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~~ 73 (260)
.+.|.|.||.+|+.++..
T Consensus 46 liaGTStGgiiA~~la~~ 63 (349)
T cd07214 46 VIAGTSTGGLITAMLTAP 63 (349)
T ss_pred EEeeCCHHHHHHHHHhcC
Confidence 467999999999999874
No 341
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.90 E-value=85 Score=21.75 Aligned_cols=32 Identities=13% Similarity=-0.125 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....+.-.+..++.+.++++|||-=|.+...+
T Consensus 67 ~~asleyAv~~L~v~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 67 CLSVLQYAVDVLKVKHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred hhhhHHHHHHhcCCCEEEEecCCCchHHHHHH
Confidence 34555666778899999999999766655544
No 342
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=30.66 E-value=2e+02 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=30.7
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCC
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNV 222 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
..|++++.|..+...+.+..+.+.+.+.+.=+..++..
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 58999999999998888888888887666667777754
No 343
>PRK15322 invasion protein OrgB; Provisional
Probab=30.23 E-value=57 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=15.8
Q ss_pred hhchhHHHHHHHHhhhhccccccccceecccc
Q 024971 228 VSLYLSLSSACLHTLSYLHTCRCYDQVAIFFP 259 (260)
Q Consensus 228 ~~~p~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 259 (260)
+++|+.+...+.+|+..+.+.. ..+.+++|
T Consensus 89 Ld~pd~LL~~le~Wl~~l~~~~--~pL~l~lP 118 (210)
T PRK15322 89 VDHPETLLTVLDEWLRDFDKPE--GQLFLTLP 118 (210)
T ss_pred ccCHHHHHHHHHHHHHhCcccc--CceeEecC
Confidence 4456666666666666554432 44444444
No 344
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=30.09 E-value=1.7e+02 Score=19.38 Aligned_cols=34 Identities=6% Similarity=-0.030 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
.+....+.-.+..++.+.++++||+-=|.+...+
T Consensus 39 ~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~ 72 (153)
T PF00484_consen 39 DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAAL 72 (153)
T ss_dssp HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHH
T ss_pred cchhhheeeeeecCCCCEEEEEcCCCchHHHHHH
Confidence 4455566667788899999999999777666443
No 345
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=29.94 E-value=1.6e+02 Score=23.53 Aligned_cols=81 Identities=20% Similarity=0.069 Sum_probs=49.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCC-------C---------CCCCccHHHHHHHHHHHHHhhc----CCceEEEEeChh
Q 024971 4 AKSHRVYSIDLIGYGYSDKPNPRDF-------F---------DKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIG 63 (260)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~----~~~~~lvGhS~G 63 (260)
+.|..|+.+|.-=.|....+..-.. + ......++.+++-+..++..+. +.-++-+|-|.|
T Consensus 26 ~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~l~~~g~i~Gvi~~GGs~G 105 (403)
T PF06792_consen 26 AQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFVSDLYDEGKIDGVIGIGGSGG 105 (403)
T ss_pred HCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCcc
Confidence 4678888888654444332210000 0 0122334445555555665552 345788999999
Q ss_pred hHHHHHHHhhCccchhhceEe
Q 024971 64 GLVGLQAAVMEPEICRGMILL 84 (260)
Q Consensus 64 g~~a~~~a~~~p~~v~~lvl~ 84 (260)
..++.......|--+-++++.
T Consensus 106 T~lat~aMr~LPiG~PKlmVS 126 (403)
T PF06792_consen 106 TALATAAMRALPIGFPKLMVS 126 (403)
T ss_pred HHHHHHHHHhCCCCCCeEEEE
Confidence 999999998888666676644
No 346
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=29.91 E-value=94 Score=21.62 Aligned_cols=41 Identities=34% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCCEEEEecCCCC-CCChHHHHHhhcc-CCCccEEEeCCCCCCc
Q 024971 185 KCPVLIAWGDKDP-WEPIELGRAYGNF-DSVEDFIVLPNVGHCP 226 (260)
Q Consensus 185 ~~P~l~i~g~~D~-~~~~~~~~~~~~~-~~~~~~~~~~~~gH~~ 226 (260)
+.-+|+.+|..|. .+..+..++.+++ ..+.-+.++- +||+.
T Consensus 63 ~tDVLiWWGH~~Hg~V~D~iVeRV~kRV~EGMGLiVLH-SGHfS 105 (261)
T COG4813 63 KTDVLIWWGHKDHGAVEDEIVERVQKRVWEGMGLIVLH-SGHFS 105 (261)
T ss_pred ccceEEEeccccccccchHHHHHHHHHHhcccceEEEe-ccchh
Confidence 4789999998876 3445555665554 4455566665 68873
No 347
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=29.90 E-value=40 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.3
Q ss_pred EEEEeChhhHHHHHHHh
Q 024971 56 FFICNSIGGLVGLQAAV 72 (260)
Q Consensus 56 ~lvGhS~Gg~~a~~~a~ 72 (260)
.+.|.|.||.+|+.++.
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 46799999999998764
No 348
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=29.71 E-value=64 Score=22.45 Aligned_cols=26 Identities=8% Similarity=-0.162 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCh
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSI 62 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~ 62 (260)
+.++.-+..++++.++.+-.++|||-
T Consensus 133 ~aL~~L~~~L~~~y~i~~~~IvGH~d 158 (185)
T PRK11789 133 QALAALTRALRAAYPIIAERITGHSD 158 (185)
T ss_pred HHHHHHHHHHHHHcCCCHHhEEehhh
Confidence 34444445555666665568999974
No 349
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=29.57 E-value=1.1e+02 Score=25.43 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHH-HHhhcCCceEEEE-eChhhHHHHHHHhh
Q 024971 35 TFETWASQLNDF-CKDVVKDQAFFIC-NSIGGLVGLQAAVM 73 (260)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~lvG-hS~Gg~~a~~~a~~ 73 (260)
-++++++|+... .+.++..|-.++| +|=||.+|..++.+
T Consensus 382 yLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~ 422 (550)
T PF00862_consen 382 YLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK 422 (550)
T ss_dssp GHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh
Confidence 578889888654 5667777778888 58888888888765
No 350
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=29.50 E-value=43 Score=25.74 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=39.9
Q ss_pred EcCCCCCCCCCCCCCCCC-------CCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhc
Q 024971 12 IDLIGYGYSDKPNPRDFF-------DKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (260)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~l 81 (260)
+.+||++..++..+..+. ..+.|+..++.+-+..+++..++.+.. |.|-.|--|..+....|.+++++
T Consensus 231 f~MPg~~m~dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~--gL~~eg~~Ard~l~~l~~r~~r~ 305 (330)
T PF03405_consen 231 FRMPGHLMPDGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRT--GLSGEGEKARDYLCALPARLRRF 305 (330)
T ss_dssp ---TTTT---SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG----S--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhcccCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCccc--CCChHHHHHHHHHHhhHHHHHHH
Confidence 567888765533221110 125688888888667788888887765 88888998988888888777765
No 351
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=29.50 E-value=91 Score=24.53 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=49.4
Q ss_pred EcCCCCCCCCCCCCCCCC-------CCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhce
Q 024971 12 IDLIGYGYSDKPNPRDFF-------DKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (260)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lv 82 (260)
+.+||++..++..+..+. ..+.|+..++++-+..+++.-++.+. -|.|-=|--|..+....|.+++++-
T Consensus 288 i~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l--~gLs~eg~kArd~l~~l~~rirr~~ 363 (390)
T PLN00179 288 ITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEEL--TGLSGEGRRAQDYVCGLPPRIRRLE 363 (390)
T ss_pred CCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcc--cCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 678888877654322221 13578888888666677777777655 5888889999999988888877654
No 352
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=1.6e+02 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.3
Q ss_pred CceEEEEeChhhHHHHHHHhh
Q 024971 53 DQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+.++++|.|-|+.+|--+|..
T Consensus 122 D~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 122 DEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred CeEEEeeccchhHHHHHHHHH
Confidence 689999999999999887754
No 353
>PLN03019 carbonic anhydrase
Probab=28.83 E-value=1.2e+02 Score=23.47 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....|.-.+.+++.+.++++|||-=|.+...+
T Consensus 201 v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 201 VGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred cchhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 34566677888999999999999655554433
No 354
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=28.66 E-value=92 Score=24.64 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.5
Q ss_pred eEEEEeChhhHHHHHHHhh
Q 024971 55 AFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 55 ~~lvGhS~Gg~~a~~~a~~ 73 (260)
-.++|-|.|+.++..++..
T Consensus 46 d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 46 HRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred CeEEEEcHHHHHHHHHHhC
Confidence 3589999999999999875
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=28.48 E-value=2.5e+02 Score=22.90 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.5
Q ss_pred CccEEEEEcCCCCCC
Q 024971 5 KSHRVYSIDLIGYGY 19 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~ 19 (260)
.+|.++.+|-+|...
T Consensus 182 ~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 182 NGYDVVIVDTAGRLH 196 (433)
T ss_pred cCCCEEEEeCCCCcc
Confidence 579999999999754
No 356
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=27.73 E-value=3e+02 Score=22.83 Aligned_cols=39 Identities=28% Similarity=0.530 Sum_probs=27.1
Q ss_pred CCCEEEEecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCc
Q 024971 185 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCP 226 (260)
Q Consensus 185 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 226 (260)
...|++.+|..|++....... ....++....|.|++|+.
T Consensus 433 atnVvf~NG~~DPWh~LG~~~---st~~~~~~~li~gtsHCa 471 (514)
T KOG2182|consen 433 ATNVVFPNGSLDPWHALGLQN---STDSSVVSILINGTSHCA 471 (514)
T ss_pred cceEEecCCCCCchhhhcccc---CCCCCceEEEecCCcccc
Confidence 478999999999875433222 223345677889999974
No 357
>PRK15450 signal transduction protein PmrD; Provisional
Probab=27.63 E-value=79 Score=18.30 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.1
Q ss_pred CCCCCCChHHHHHhhccCCCccEEEeCCCCCCcc
Q 024971 194 DKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 227 (260)
Q Consensus 194 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 227 (260)
.-|.+.|...++...+..+...+.++. +.|+..
T Consensus 42 ~gDlLsPL~dA~YciNr~~~~t~Kii~-As~Ys~ 74 (85)
T PRK15450 42 VGDLLSPLQNALYCINREKLQTLKILS-ASCYSP 74 (85)
T ss_pred cccccccchhhhhhhcCCCCceEEEEe-ccccCH
Confidence 467788888888888887877788877 788765
No 358
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=27.56 E-value=1e+02 Score=16.97 Aligned_cols=38 Identities=0% Similarity=-0.142 Sum_probs=29.1
Q ss_pred ccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhhccc
Q 024971 209 NFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLHT 247 (260)
Q Consensus 209 ~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~ 247 (260)
+..|+.++..+.| --+...|.-+++.+.|.+|-+.+..
T Consensus 23 e~~PDttItLinG-kkyvVkEsveEVi~kI~~y~rkI~~ 60 (67)
T COG1582 23 EAFPDTTITLING-KKYVVKESVEEVINKIIEYRRKIGS 60 (67)
T ss_pred hccCCcEEEEEcC-cEEEEcccHHHHHHHHHHHHHHhhe
Confidence 4578887777763 5677788899999999998876643
No 359
>PRK06193 hypothetical protein; Provisional
Probab=26.53 E-value=1.2e+02 Score=21.62 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHHhhc--CCceEEEEeCh
Q 024971 34 YTFETWASQLNDFCKDVV--KDQAFFICNSI 62 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~lvGhS~ 62 (260)
.+.+.+.+++..+++.+. .+++.+|||..
T Consensus 135 ~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 135 ERNALLKAGLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEeCch
Confidence 456666788888888874 35799999995
No 360
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=26.39 E-value=1.4e+02 Score=20.24 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHHHHhhcCCceEEEEeC-hhhHHHHHHHhhC
Q 024971 33 FYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVME 74 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~lvGhS-~Gg~~a~~~a~~~ 74 (260)
.++.+.+++.+.+++++.+ ..++|+|+| .|.-++-++|.+.
T Consensus 65 ~~~~~~~a~al~~~i~~~~-p~~Vl~~~t~~g~~la~rlAa~L 106 (168)
T cd01715 65 HYLAEPYAPALVALAKKEK-PSHILAGATSFGKDLAPRVAAKL 106 (168)
T ss_pred ccChHHHHHHHHHHHHhcC-CCEEEECCCccccchHHHHHHHh
Confidence 4567888888889888876 467777754 6667777777764
No 361
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.25 E-value=2.5e+02 Score=20.12 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=30.3
Q ss_pred CEEEEecCCCCCCChHHHHHhhccC--CCccEEEeCCCCCCcchhchhHHHHHHHHhhhhc
Q 024971 187 PVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYL 245 (260)
Q Consensus 187 P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~ 245 (260)
+++++.|..|+..+.+..+.+.+.. ++.++.++|-++-. +++..+.+.+.++.+
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~-----~~~~~~~~~~~~~~l 56 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEE-----PAEVGEEYRDVFERL 56 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcC-----hhHHHHHHHHHHHHc
Confidence 4667777766555556666655553 35677777765533 344444444444443
No 362
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=26.23 E-value=83 Score=21.67 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=9.5
Q ss_pred CceEEEEeChhh
Q 024971 53 DQAFFICNSIGG 64 (260)
Q Consensus 53 ~~~~lvGhS~Gg 64 (260)
+..+|||||.--
T Consensus 101 ~~tILVGHsL~n 112 (174)
T cd06143 101 LGCIFVGHGLAK 112 (174)
T ss_pred CCCEEEeccchh
Confidence 456999999865
No 363
>PRK07877 hypothetical protein; Provisional
Probab=26.12 E-value=1.1e+02 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=28.3
Q ss_pred HhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 48 KDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 48 ~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
+.+...++.++|-+.|+.++..+|..- -|..+++++.-
T Consensus 103 ~~L~~~~V~IvG~GlGs~~a~~LaraG--vvG~l~lvD~D 140 (722)
T PRK07877 103 ERLGRLRIGVVGLSVGHAIAHTLAAEG--LCGELRLADFD 140 (722)
T ss_pred HHHhcCCEEEEEecHHHHHHHHHHHcc--CCCeEEEEcCC
Confidence 445556899999999999998887643 13778888874
No 364
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=26.11 E-value=84 Score=23.92 Aligned_cols=36 Identities=19% Similarity=-0.070 Sum_probs=25.5
Q ss_pred CceEEEEeChhhHHHHHHHhhCc----------------cchhhceEeccCc
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEP----------------EICRGMILLNISL 88 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p----------------~~v~~lvl~~~~~ 88 (260)
.+++|+|.|=|+.+.-.+..... .+|+.+-.++++.
T Consensus 193 ~~~~LiGFSKGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh 244 (303)
T PF10561_consen 193 PPLTLIGFSKGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGH 244 (303)
T ss_pred CceEEEEecCcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCC
Confidence 37899999999998877665432 1366666677654
No 365
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=26.10 E-value=1.6e+02 Score=21.67 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCceEEEEeChhhH---HHHHHHhhCccchhhceEecc
Q 024971 40 ASQLNDFCKDVVKDQAFFICNSIGGL---VGLQAAVMEPEICRGMILLNI 86 (260)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lvGhS~Gg~---~a~~~a~~~p~~v~~lvl~~~ 86 (260)
.+++.+.++..|+++.+++.-|..+. ..+..+. .++++.+++.++|
T Consensus 30 ~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~-~~~r~~g~~~~~p 78 (263)
T cd01311 30 IDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALA-SNGKARGGATVDP 78 (263)
T ss_pred HHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHh-hCCCeEEEEEECC
Confidence 55556667778999988887554222 1222222 4578888888765
No 366
>PRK08671 methionine aminopeptidase; Provisional
Probab=25.91 E-value=61 Score=24.44 Aligned_cols=31 Identities=0% Similarity=-0.066 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCce-EEEEeChhh
Q 024971 34 YTFETWASQLNDFCKDVVKDQA-FFICNSIGG 64 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~lvGhS~Gg 64 (260)
.+..++.+.+.++++..+..++ .+.||++|=
T Consensus 125 ~~~~dv~~~i~~vi~~~G~~~~~~~~GHgiG~ 156 (291)
T PRK08671 125 VSVGEIGRVIEETIRSYGFKPIRNLTGHGLER 156 (291)
T ss_pred CCHHHHHHHHHHHHHHcCCcccCCCcccCcCC
Confidence 4555666666677777776653 689999984
No 367
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=25.90 E-value=1.1e+02 Score=20.29 Aligned_cols=47 Identities=6% Similarity=-0.030 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
.++.++++..+.+.++++|-+....+...+.......++-.|+.+..
T Consensus 88 t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~ 134 (155)
T cd01014 88 TDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADAC 134 (155)
T ss_pred CCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccc
Confidence 36778888889999999999987666554433332234445544444
No 368
>COG3621 Patatin [General function prediction only]
Probab=25.89 E-value=1.4e+02 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcCC----ceEEE-EeChhhHHHHHHHhhCc
Q 024971 39 WASQLNDFCKDVVKD----QAFFI-CNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~----~~~lv-GhS~Gg~~a~~~a~~~p 75 (260)
+...+...+++.... .+.++ |.|.||.+++.+|.-.+
T Consensus 23 i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks 64 (394)
T COG3621 23 ILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKS 64 (394)
T ss_pred HHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCC
Confidence 344455555554322 34555 89999999999987544
No 369
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=25.87 E-value=1.2e+02 Score=21.84 Aligned_cols=37 Identities=5% Similarity=-0.120 Sum_probs=26.1
Q ss_pred CCceEEEEeChhhHHHHHHH----hhCccchhhceEeccCccc
Q 024971 52 KDQAFFICNSIGGLVGLQAA----VMEPEICRGMILLNISLRM 90 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a----~~~p~~v~~lvl~~~~~~~ 90 (260)
.+++.++||.||-.-...|+ ..| .|+.+|-+++....
T Consensus 55 Gk~iSvmg~GmGipS~sIY~~ELi~~y--~Vk~iIRvGt~Gal 95 (236)
T COG0813 55 GKKISVMGHGMGIPSISIYSRELITDY--GVKKIIRVGTCGAL 95 (236)
T ss_pred CcEEEEEEecCCCccHHHHHHHHHHHh--CcceEEEEEccccc
Confidence 35899999999965544444 344 38899988887543
No 370
>PLN03006 carbonate dehydratase
Probab=25.81 E-value=1e+02 Score=23.44 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~ 68 (260)
....|.-.+.+++.+.++++|||-=|.+..
T Consensus 158 ~~aSLEYAV~~L~V~~IVV~GHs~CGaV~A 187 (301)
T PLN03006 158 TKAALEFSVNTLNVENILVIGHSRCGGIQA 187 (301)
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 345566778889999999999997665553
No 371
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=25.72 E-value=1.9e+02 Score=19.65 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhc----CCceEEEEeC--hhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVV----KDQAFFICNS--IGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~----~~~~~lvGhS--~Gg~~a~~~a~~ 73 (260)
-+..+.+++++.+ .+++.++|.| .|-.++..+..+
T Consensus 19 Tp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~ 59 (160)
T PF02882_consen 19 TPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK 59 (160)
T ss_dssp HHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC
Confidence 3455666777754 3589999999 577777777665
No 372
>PRK10437 carbonic anhydrase; Provisional
Probab=25.69 E-value=1.1e+02 Score=22.02 Aligned_cols=31 Identities=10% Similarity=-0.096 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
...+.-.+..++.+.++++||+-=|.+...+
T Consensus 78 ~~~leyAV~~L~v~~IvV~GHt~CG~V~Aal 108 (220)
T PRK10437 78 LSVVQYAVDVLEVEHIIICGHYGCGGVQAAV 108 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 4445556777899999999999766555544
No 373
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=25.65 E-value=89 Score=17.06 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=25.7
Q ss_pred ccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhhc
Q 024971 209 NFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYL 245 (260)
Q Consensus 209 ~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~ 245 (260)
+..|+. ...+-++.++...|.++++.+.+.+|-+.+
T Consensus 23 e~~PDT-vItL~~G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 23 EETPDT-VITLTNGKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EEcCCe-EEEEeCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 346764 444454566888899999999999887653
No 374
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.62 E-value=1.6e+02 Score=22.35 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcC----CceEEEEeC--hhhHHHHHHHhh
Q 024971 41 SQLNDFCKDVVK----DQAFFICNS--IGGLVGLQAAVM 73 (260)
Q Consensus 41 ~~~~~~~~~~~~----~~~~lvGhS--~Gg~~a~~~a~~ 73 (260)
..+.+++++.+. +++.++|.| +|..++..+..+
T Consensus 143 ~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ 181 (284)
T PRK14179 143 AGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK 181 (284)
T ss_pred HHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC
Confidence 345667777653 589999986 899999988765
No 375
>PF02972 Phycoerythr_ab: Phycoerythrin, alpha/beta chain; InterPro: IPR004228 Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels []. Phycoerythrin (PE) 545 is a heterodimeric of alpha(1)alpha(2)betabeta subunits. Each alpha subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that probably acts as the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction centre [].; GO: 0030089 phycobilisome; PDB: 1XG0_B 1QGW_B 1XF6_B.
Probab=25.54 E-value=56 Score=17.33 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.8
Q ss_pred EEEEcCCCCCCCC
Q 024971 9 VYSIDLIGYGYSD 21 (260)
Q Consensus 9 v~~~D~~G~G~S~ 21 (260)
|-.+|.||+.+..
T Consensus 5 ItiFDhRGC~r~~ 17 (57)
T PF02972_consen 5 ITIFDHRGCDRAP 17 (57)
T ss_dssp EEEEE-TT-SS--
T ss_pred EEEecccccCCCc
Confidence 5678999995543
No 376
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=25.34 E-value=2.1e+02 Score=22.93 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeCh
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~ 62 (260)
+.|.||.+|.|.+++|.... ..-..++.+-+...++-+..+-+.++-.+.
T Consensus 289 ~~fDlIilDPPsF~r~k~~~--------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQE--------FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CcccEEEECCcccccCcccc--------hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 36999999999999997633 112334444444444444444444444333
No 377
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=25.14 E-value=49 Score=18.45 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=12.0
Q ss_pred CCCCCCcchhchhHHHHHHHHhhhhcccccc
Q 024971 220 PNVGHCPQVSLYLSLSSACLHTLSYLHTCRC 250 (260)
Q Consensus 220 ~~~gH~~~~~~p~~~~~~i~~~l~~~~~~~~ 250 (260)
.|.||+.+.+.-+.-...+...-+.-.+.-|
T Consensus 35 ~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC 65 (78)
T PF13341_consen 35 RGGGHWVHAQCMDLSETMLIQLSQENTKYFC 65 (78)
T ss_dssp STT-EEEETGGGT--HHHHHHHHHSSS-B--
T ss_pred CCCceEeEeecccchHHHHHHHccCCceEEE
Confidence 4567877765443333333333333333333
No 378
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=24.92 E-value=65 Score=24.30 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCce-EEEEeChhh
Q 024971 34 YTFETWASQLNDFCKDVVKDQA-FFICNSIGG 64 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~lvGhS~Gg 64 (260)
.+..++.+.+.++++..|..++ .+.|||+|-
T Consensus 124 ~~~~dV~~ai~~~i~~~G~~~~~~~~GHgig~ 155 (291)
T cd01088 124 VRLGEIGEAIEEVIESYGFKPIRNLTGHSIER 155 (291)
T ss_pred CcHHHHHHHHHHHHHHcCCEEeecCCccCccC
Confidence 3555666666677777777654 578999994
No 379
>PRK06490 glutamine amidotransferase; Provisional
Probab=24.67 E-value=1.5e+02 Score=21.70 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHH
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a 71 (260)
..+...+.++++..-....-++|.++|..+...+.
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQMLARHL 103 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHc
Confidence 34556666666654334456899999998877664
No 380
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=24.55 E-value=1.9e+02 Score=18.05 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhC
Q 024971 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+++.++++.-..+++.++=||.-+.++..+-.++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~ 41 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREF 41 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHH
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHH
Confidence 4566677766667999999999999988776544
No 381
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.41 E-value=1.2e+02 Score=20.47 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeChh
Q 024971 38 TWASQLNDFCKDVVKDQAFFICNSIG 63 (260)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~lvGhS~G 63 (260)
..+....++.-.+|.++++++|..++
T Consensus 141 sV~~~a~~lA~~lG~~~I~L~G~D~~ 166 (170)
T PF01973_consen 141 SVANTALQLAYYLGFKPIYLIGQDLA 166 (170)
T ss_pred cHHHHHHHHHHHHCCCcEEEEeecCC
Confidence 34445566667788888888887764
No 382
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.30 E-value=2.2e+02 Score=20.04 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=20.8
Q ss_pred CCceEEEEeChhhHHHHHHHhhCc
Q 024971 52 KDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
.++++++|.+-.|.+|..++.+..
T Consensus 45 g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 45 GARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcC
Confidence 468999999999999999997753
No 383
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.99 E-value=1.7e+02 Score=20.09 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=30.8
Q ss_pred CCccHHHHHHHHHHHHHhhcCCceEEEEe-ChhhHHHHHHHhhC
Q 024971 32 PFYTFETWASQLNDFCKDVVKDQAFFICN-SIGGLVGLQAAVME 74 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~lvGh-S~Gg~~a~~~a~~~ 74 (260)
..++.+.+++.+.++++..+ -.++++|+ +.|+.++-++|.+.
T Consensus 72 ~~~~~~~~a~~l~~~i~~~~-p~~Vl~g~t~~g~~la~rlA~~L 114 (181)
T cd01985 72 AGYDPEATAKALAALIKKEK-PDLILAGATSIGKQLAPRVAALL 114 (181)
T ss_pred cCCChHHHHHHHHHHHHHhC-CCEEEECCcccccCHHHHHHHHh
Confidence 34677888888889888876 46777775 46777888877664
No 384
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=23.89 E-value=99 Score=22.02 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
......+.-.+..++.+.++++||+-=|++...+
T Consensus 76 ~~~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~ 109 (207)
T COG0288 76 GSVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAAL 109 (207)
T ss_pred cchhHHHHHHHHHcCCCEEEEecCCCcHHHHhcc
Confidence 4556667777888999999999998666655544
No 385
>PLN03014 carbonic anhydrase
Probab=23.87 E-value=1.7e+02 Score=22.78 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQ 69 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~ 69 (260)
....+.-.+..++.+.++++|||-=|.+...
T Consensus 206 v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa 236 (347)
T PLN03014 206 VGAAIEYAVLHLKVENIVVIGHSACGGIKGL 236 (347)
T ss_pred chhHHHHHHHHhCCCEEEEeCCCCchHHHHH
Confidence 4456666788899999999999965544443
No 386
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=23.84 E-value=68 Score=25.98 Aligned_cols=53 Identities=19% Similarity=0.059 Sum_probs=29.0
Q ss_pred ecCCCCCCChHHHHHhhccCCCccEEEeCCCCCCcchhchhHHHHHHHHhhhhcccc
Q 024971 192 WGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLSSACLHTLSYLHTC 248 (260)
Q Consensus 192 ~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~l~~~~~~ 248 (260)
+|..|..++.+..+... ...+....++ +.|..++.+ +++.+.|.+||..-...
T Consensus 373 y~dGDGTV~~~S~~~~~--~~~~~~~~l~-~~H~~il~n-~~v~~~I~~fL~~g~f~ 425 (440)
T PLN02733 373 YVDGDGTVPVESAKADG--LNAVARVGVP-GDHRGILRD-EHVFRILKHWLKVGEPD 425 (440)
T ss_pred EeCCCCEEecchhhccC--ccccccccCC-chHHHHhcC-HHHHHHHHHHHhcCCCc
Confidence 34444445544443221 1223334455 788877754 67788888998544333
No 387
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.83 E-value=74 Score=18.07 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=17.3
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
+++++| ||.+++.+|....+.=..+.++...
T Consensus 1 ~vvViG---gG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIG---GGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEES---SSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEC---cCHHHHHHHHHHHHhCcEEEEEecc
Confidence 356777 5556666655443333456666654
No 388
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]
Probab=23.61 E-value=98 Score=24.51 Aligned_cols=43 Identities=12% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCceEEEEeChhh-HHHHHHHhhCccchhhceEec
Q 024971 41 SQLNDFCKDVVKDQAFFICNSIGG-LVGLQAAVMEPEICRGMILLN 85 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~lvGhS~Gg-~~a~~~a~~~p~~v~~lvl~~ 85 (260)
+|+...+..+-....++||||.=. .-|+.+ .||.-++..+++.
T Consensus 281 ~dvq~~l~~~~~~~TILVGHSLenDL~aLKl--~H~~ViDTa~lf~ 324 (380)
T KOG2248|consen 281 EDVQKELLELISKNTILVGHSLENDLKALKL--DHPSVIDTAVLFK 324 (380)
T ss_pred HHHHHHHHhhcCcCcEEEeechhhHHHHHhh--hCCceeeeeEEEe
Confidence 345444444544678999999874 334444 3554454444443
No 389
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=23.55 E-value=1e+02 Score=23.53 Aligned_cols=31 Identities=6% Similarity=-0.121 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCceEEEEeChhhHHHHHHHhh
Q 024971 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+.++++.+.....-++|-|||+.+++.+..-
T Consensus 124 l~~i~~w~~~~~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 124 LKEILDWAKTHVTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHcCCCEEEEcHHHHHHHHHcCC
Confidence 4444444332346788999999999877643
No 390
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=23.52 E-value=1.4e+02 Score=20.89 Aligned_cols=32 Identities=6% Similarity=-0.098 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....+.-.+..++.+.++++|||-=|.+...+
T Consensus 73 ~~asleyav~~l~v~~ivV~GH~~Cgav~Aa~ 104 (190)
T cd00884 73 TSAAIEYAVAVLKVEHIVVCGHSDCGGIRALL 104 (190)
T ss_pred hhhhHHHHHHHhCCCEEEEeCCCcchHHHHHh
Confidence 34556666888899999999999766555544
No 391
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=23.39 E-value=2.6e+02 Score=21.40 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHHHHHhh-----cCCceEEEEeChhhHHHHHHHhhCc
Q 024971 33 FYTFETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEP 75 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~-----~~~~~~lvGhS~Gg~~a~~~a~~~p 75 (260)
++..+.-+..-.+..++. +.+++.++|-|.|=.+|.++++.+.
T Consensus 17 P~GCe~nV~~QI~y~k~~gp~~ngPKkVLviGaSsGyGLa~RIsaaFG 64 (398)
T COG3007 17 PYGCEANVLQQIDYVKAAGPIKNGPKKVLVIGASSGYGLAARISAAFG 64 (398)
T ss_pred CccHHHHHHHHHHHHHhcCCccCCCceEEEEecCCcccHHHHHHHHhC
Confidence 344444443333344443 3468999999999999998887764
No 392
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.37 E-value=87 Score=24.37 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=23.3
Q ss_pred ceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 54 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
++++||-++||..+..-+.+....=..++++++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence 4789999999987776664432223467888764
No 393
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=23.32 E-value=1.3e+02 Score=17.85 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHhhcCCce-EEEEeChhhHH
Q 024971 35 TFETWASQLNDFCKDVVKDQA-FFICNSIGGLV 66 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-~lvGhS~Gg~~ 66 (260)
+..+.++-|.+.++..-.... ++||.|+|+.+
T Consensus 34 ~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~ 66 (89)
T PF01221_consen 34 DEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSV 66 (89)
T ss_dssp SHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEE
T ss_pred cHHHHHHHHHHHHhcccCCceEEEECCcEEEEE
Confidence 445667777766666532332 36799999744
No 394
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=23.30 E-value=57 Score=21.69 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.1
Q ss_pred eEEEEeChhhHHH
Q 024971 55 AFFICNSIGGLVG 67 (260)
Q Consensus 55 ~~lvGhS~Gg~~a 67 (260)
.+++|.|.|+++.
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 7899999999773
No 395
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.24 E-value=1.3e+02 Score=21.89 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeChhh
Q 024971 14 LIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGG 64 (260)
Q Consensus 14 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg 64 (260)
.|..|.|..-. .+.++..+.+-...+++-++|.++++++|..|-+
T Consensus 153 ~r~IGFSkDI~------~G~fDagTVaY~ALQIaY~LGF~~I~iaGLDMnN 197 (269)
T PRK09822 153 GRLAGFCKDIS------IGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTG 197 (269)
T ss_pred CCceeeeeccc------cCeeeccchHHHHHHHHHHcCCCEEEEEeeccCC
Confidence 34445554433 2455666777777788888899999999988765
No 396
>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of
Probab=22.99 E-value=1.7e+02 Score=18.31 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHhhcCC-ceEEEEeChhh
Q 024971 34 YTFETWASQLNDFCKDVVKD-QAFFICNSIGG 64 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~-~~~lvGhS~Gg 64 (260)
..++..+.-+..+++..++. .-.++||....
T Consensus 86 ~q~~~~~~L~~~l~~~~~i~~~~~i~~H~~~~ 117 (126)
T cd06583 86 AQLEALAELLAYLVKRYGIPPDYRIVGHRDVS 117 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEecccCC
Confidence 45666666777777777876 67899998754
No 397
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=22.79 E-value=2.9e+02 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHH-----HHHhhcCCceEEEEe-ChhhHHHHHHHhhCccchhhceEeccC
Q 024971 34 YTFETWASQLND-----FCKDVVKDQAFFICN-SIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 34 ~~~~~~~~~~~~-----~~~~~~~~~~~lvGh-S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
++.+++-+.+.. ..+.+...++.++|- ++|+.++..++.. -+..+++++.-
T Consensus 5 ~~~~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D 61 (212)
T PRK08644 5 PSMEEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFD 61 (212)
T ss_pred CcHHHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 445555544443 344556678999984 4888888888764 37788888875
No 398
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=22.66 E-value=33 Score=23.57 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHhh
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
+-+.+.++++.....-...+|-|||+..|+.++.-
T Consensus 83 Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 83 YWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcC
Confidence 33445555555543335678899999999988753
No 399
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=22.58 E-value=1.1e+02 Score=21.71 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=14.7
Q ss_pred HHHHHhhcCCceEEEEeChhh
Q 024971 44 NDFCKDVVKDQAFFICNSIGG 64 (260)
Q Consensus 44 ~~~~~~~~~~~~~lvGhS~Gg 64 (260)
..+++....+.+.+|||+=|=
T Consensus 143 ~~~i~~~~~~tVLIVGHnp~i 163 (201)
T PRK15416 143 KDLQRKSPDKNIVIFTHNHCL 163 (201)
T ss_pred HHHHHhCCCCEEEEEeCchhH
Confidence 455555555779999999653
No 400
>PLN00416 carbonate dehydratase
Probab=22.47 E-value=2.5e+02 Score=20.98 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....+.-.+..++.+.++++|||-=|.+...+
T Consensus 126 ~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 126 VGAAVEYAVVHLKVENILVIGHSCCGGIKGLM 157 (258)
T ss_pred chhHHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 34456667788899999999999655554443
No 401
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=22.31 E-value=1.5e+02 Score=17.99 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEe
Q 024971 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60 (260)
Q Consensus 9 v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGh 60 (260)
.++++++|...... ..++.++-.+.....+..+. ++.+++|.
T Consensus 31 Ffl~eYrGvsPd~w---------kgf~~~EDpE~aik~i~D~s-~~AVlI~t 72 (110)
T COG4075 31 FFLHEYRGVSPDKW---------KGFSKEEDPESAIKAIRDLS-DKAVLIGT 72 (110)
T ss_pred EEEEEecCcChhHh---------cCcccccCHHHHHHHHHHhh-hceEEEEE
Confidence 46778887654333 23455544444444444443 45666653
No 402
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.20 E-value=2.9e+02 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCceEEEEeChhhHHHHHHHhhCcc
Q 024971 52 KDQAFFICNSIGGLVGLQAAVMEPE 76 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~~p~ 76 (260)
..+++++|..-.|.++...|...+.
T Consensus 49 ggrl~~~GaGtSg~la~~da~e~~~ 73 (257)
T cd05007 49 GGRLIYVGAGTSGRLGVLDASELPP 73 (257)
T ss_pred CCEEEEEcCcHHHHHHHHHHHhccc
Confidence 4589999999999999776665543
No 403
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=21.98 E-value=1.5e+02 Score=21.08 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=12.1
Q ss_pred cCCceEEEEeChhhHHHH
Q 024971 51 VKDQAFFICNSIGGLVGL 68 (260)
Q Consensus 51 ~~~~~~lvGhS~Gg~~a~ 68 (260)
+.-..+++=||+||....
T Consensus 122 d~~~~~~i~~slgGGTGS 139 (216)
T PF00091_consen 122 DSLDGFFIVHSLGGGTGS 139 (216)
T ss_dssp TTESEEEEEEESSSSHHH
T ss_pred cccccceecccccceecc
Confidence 444678888888876433
No 404
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=21.87 E-value=2.2e+02 Score=18.72 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.4
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeC
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS 61 (260)
+...+-|+.+|=+|++.=.....-.. +.+..-...+.+...++++..+ +.+...|.|
T Consensus 17 ~p~~~ivvRiDG~~F~kft~~~~f~K-P~D~r~~~~M~~aa~~l~~~~~-~~~~aY~~S 73 (135)
T PF04446_consen 17 LPNTPIVVRIDGRGFHKFTKRHGFEK-PNDERFLKAMNEAAKALMEEFP-DIVLAYGQS 73 (135)
T ss_dssp -TTSEEEEEEEETTHHHHHHHTT--S-S--HHHHHHHHHHHHHHHHHSS-SEEEEEEET
T ss_pred CCCCeEEEEEeCcchhhhcccCCCCC-CCCHHHHHHHHHHHHHHHHhCC-CcEEEEEcC
Confidence 46678999999887764221100000 0133445566667777888777 556666776
No 405
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=21.72 E-value=2.8e+02 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCceEEEEeCh-hhHHHHHHHhhC
Q 024971 34 YTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVME 74 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~lvGhS~-Gg~~a~~~a~~~ 74 (260)
++.+.+++.+.++++..+...++|+|+|. |--++-++|.+.
T Consensus 62 ~~~e~~~~al~~~i~~~~p~~~vl~~~T~~Gr~laprlAa~l 103 (313)
T PRK03363 62 RMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRL 103 (313)
T ss_pred cChHHHHHHHHHHHHhhCCCcEEEEcCCccHHHHHHHHHHHh
Confidence 67788999999988886543588888774 555666666653
No 406
>PRK03482 phosphoglycerate mutase; Provisional
Probab=21.62 E-value=2.9e+02 Score=19.52 Aligned_cols=36 Identities=6% Similarity=0.143 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHHHHhh----cCCceEEEEeChhhHHHHHH
Q 024971 33 FYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~----~~~~~~lvGhS~Gg~~a~~~ 70 (260)
.-++.++.+-+..+++.+ ..+.+.+|+| |+.+...+
T Consensus 119 gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l~ 158 (215)
T PRK03482 119 GESMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCLV 158 (215)
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHHH
Confidence 457777777777666654 2246888888 45544433
No 407
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.60 E-value=2.1e+02 Score=21.88 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhc----CCceEEEEeC--hhhHHHHHHHhh
Q 024971 40 ASQLNDFCKDVV----KDQAFFICNS--IGGLVGLQAAVM 73 (260)
Q Consensus 40 ~~~~~~~~~~~~----~~~~~lvGhS--~Gg~~a~~~a~~ 73 (260)
+..+.+++++.+ .+++.++|.| ||..+|..+...
T Consensus 142 p~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~ 181 (296)
T PRK14188 142 PLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA 181 (296)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC
Confidence 445666777664 3579999965 899999888754
No 408
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=21.38 E-value=2.8e+02 Score=20.12 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHhhcCCceEEEEeChhhHHHHHHHh
Q 024971 35 TFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (260)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~ 72 (260)
++..+..|+..-+...|.++++++..--|-.-++..+.
T Consensus 83 t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~ 120 (237)
T PF02633_consen 83 TLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAA 120 (237)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHH
Confidence 45555556666666668999888865544333444443
No 409
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=21.21 E-value=2.7e+02 Score=20.44 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=13.3
Q ss_pred EeChhhHHHHHHHhhC
Q 024971 59 CNSIGGLVGLQAAVME 74 (260)
Q Consensus 59 GhS~Gg~~a~~~a~~~ 74 (260)
||.+||.+.+.++..+
T Consensus 98 G~a~GgG~~lal~cD~ 113 (248)
T PRK06072 98 GVTAGACIGIALSTDF 113 (248)
T ss_pred CeeehHHHHHHHhCCE
Confidence 9999999988887643
No 410
>PRK07281 methionine aminopeptidase; Reviewed
Probab=21.17 E-value=1.4e+02 Score=22.58 Aligned_cols=28 Identities=4% Similarity=0.175 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhcCCce-EEEEeChh
Q 024971 36 FETWASQLNDFCKDVVKDQA-FFICNSIG 63 (260)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~lvGhS~G 63 (260)
+.++.+.+.++++..+...+ ..+||+.|
T Consensus 174 ~~di~~a~~~~~~~~G~~~~~~~~GHGIG 202 (286)
T PRK07281 174 IGDIGAAIQEYAESRGYGVVRDLVGHGVG 202 (286)
T ss_pred HHHHHHHHHHHHHHcCCccCCCeeeeeCC
Confidence 33333334444444444332 46788887
No 411
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=21.17 E-value=1.5e+02 Score=17.80 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=22.7
Q ss_pred HHHHHhhccCCCccEEEeCCCCCCcchhchhHHH
Q 024971 202 ELGRAYGNFDSVEDFIVLPNVGHCPQVSLYLSLS 235 (260)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~ 235 (260)
...+.+++.+......+++-.||.+-...|+...
T Consensus 9 s~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~ 42 (100)
T PF01751_consen 9 SDAKAIAKALGGEEYIVIATSGHLLELAKPEDYD 42 (100)
T ss_dssp HHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHH
T ss_pred HHHHHHHHHcCCCCEEEEEeCCcccccccccccc
Confidence 4555666666555577777789998887765544
No 412
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=21.11 E-value=1.6e+02 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=14.4
Q ss_pred ccEEEEEcCCCCCCCCCCC
Q 024971 6 SHRVYSIDLIGYGYSDKPN 24 (260)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~ 24 (260)
|-+-+.+|+||+|......
T Consensus 182 ~~~~~~vDlPG~~~a~y~~ 200 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGF 200 (320)
T ss_pred cceEEEEecCCcccccCCc
Confidence 3456789999999877654
No 413
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=20.89 E-value=83 Score=23.82 Aligned_cols=31 Identities=3% Similarity=-0.020 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCce-EEEEeChhh
Q 024971 34 YTFETWASQLNDFCKDVVKDQA-FFICNSIGG 64 (260)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~lvGhS~Gg 64 (260)
.+..++.+.+.++++..|..++ .+.||++|-
T Consensus 128 v~~~dV~~ai~~vi~~~G~~~i~~~~GHgig~ 159 (295)
T TIGR00501 128 VRVGEIGKAIQEVIESYGVKPISNLTGHSMAP 159 (295)
T ss_pred CCHHHHHHHHHHHHHHcCCeeecCCCCcceec
Confidence 3555666666677777776654 688999983
No 414
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=20.88 E-value=4e+02 Score=21.09 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=31.7
Q ss_pred CCccHHHHHHHHHHHHHhhcCCceEEEEeC-hhhHHHHHHHhhC
Q 024971 32 PFYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVME 74 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS-~Gg~~a~~~a~~~ 74 (260)
..+..+.+++.+.+++++.+ ..++|+|+| .|--++-++|.+.
T Consensus 98 ~~y~~e~~a~al~~li~~~~-P~~vL~~~T~~GrdlApRlAarL 140 (356)
T PLN00022 98 THPLAEPWAKLVVLAQQKGG-YSHILAASTSFGKNVLPRAAALL 140 (356)
T ss_pred cccChHHHHHHHHHHHHhcC-CCEEEECCCCchhHHHHHHHHHh
Confidence 45778999999999999877 467777766 4556777777664
No 415
>COG5023 Tubulin [Cytoskeleton]
Probab=20.86 E-value=2.3e+02 Score=22.50 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhcC----CceEEEEeChhhH--------HHHHHHhhCccchhhceEeccCc
Q 024971 37 ETWASQLNDFCKDVVK----DQAFFICNSIGGL--------VGLQAAVMEPEICRGMILLNISL 88 (260)
Q Consensus 37 ~~~~~~~~~~~~~~~~----~~~~lvGhS~Gg~--------~a~~~a~~~p~~v~~lvl~~~~~ 88 (260)
.++.+|+.+.|+..-. -.=+++=||.||. +.-++..++|+++..-..+-|.+
T Consensus 110 ~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p 173 (443)
T COG5023 110 KEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAP 173 (443)
T ss_pred HHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCC
Confidence 4566677766665521 1335666776654 33455677898777666666653
No 416
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.82 E-value=63 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.0
Q ss_pred CceEEEEeChhhHHHHHHHhhCccchhhceE
Q 024971 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (260)
Q Consensus 53 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl 83 (260)
.+++++|.+.||.-.=..+.++|+.+.++.+
T Consensus 119 g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 119 ERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred CcEEEEEeCCCCCchHHHhhhChhheEEEEc
Confidence 3688999999999999999999998887765
No 417
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.76 E-value=2.4e+02 Score=18.90 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=28.5
Q ss_pred CccHHHHHHHHHHHHHhhcCCceEEEEeC-hhhHHHHHHHhh
Q 024971 33 FYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVM 73 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~lvGhS-~Gg~~a~~~a~~ 73 (260)
.++.+.+++.+.+++++.+. .++++|++ .|.-++-++|.+
T Consensus 72 ~~~~~~~a~~l~~~~~~~~~-~lVl~~~t~~g~~la~~lA~~ 112 (164)
T PF01012_consen 72 EYDPEAYADALAELIKEEGP-DLVLFGSTSFGRDLAPRLAAR 112 (164)
T ss_dssp TC-HHHHHHHHHHHHHHHT--SEEEEESSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCC-CEEEEcCcCCCCcHHHHHHHH
Confidence 45778899999999999765 47788876 566666677665
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.69 E-value=3.6e+02 Score=20.85 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhh---cCCceEEEEeChhhHHHHHHHhhC
Q 024971 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVME 74 (260)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvGhS~Gg~~a~~~a~~~ 74 (260)
+.++|.++.+|-+|....+. .-++++. .+..+++.. ....+++|-.+.-|.-++.-+..+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~-----------~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT-----------NLMEELK-KIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH-----------HHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 35789999999998864332 1122222 333333322 223466776666666666555443
No 419
>PLN02154 carbonic anhydrase
Probab=20.62 E-value=1.8e+02 Score=22.07 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEeChhhHHHHHH
Q 024971 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (260)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~ 70 (260)
....+.-.+..++.+.++++|||-=|.+...+
T Consensus 152 ~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal 183 (290)
T PLN02154 152 TNSALEFAVTTLQVENIIVMGHSNCGGIAALM 183 (290)
T ss_pred hhhHHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 34456667788899999999999655555444
No 420
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=20.53 E-value=2.3e+02 Score=18.88 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 42 ~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
++...++..+.+.+++.|.+.-..+...+...+....+-+++.+..
T Consensus 78 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~ 123 (157)
T cd01012 78 AFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADAC 123 (157)
T ss_pred HHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCC
Confidence 6777888889999999999987776665543332235555555554
No 421
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=20.45 E-value=1.4e+02 Score=20.09 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCceEEEEeChhhHHHHHHHhhCccchhhceEeccC
Q 024971 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 41 ~~~~~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
.++.++++..+.+.+++.|.+.-..+...+...+...++-+|+.+..
T Consensus 101 t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~ 147 (174)
T PF00857_consen 101 TDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDAC 147 (174)
T ss_dssp SSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ccccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhh
Confidence 46778888899999999998888777554443332235555555544
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.28 E-value=4.7e+02 Score=21.16 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhcCCceEEEEeC-hhhHHHHHHHhhCc-cchhhce
Q 024971 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVMEP-EICRGMI 82 (260)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGhS-~Gg~~a~~~a~~~p-~~v~~lv 82 (260)
+++.++.+|-+|....+ .++.+.+..+.+.....-++++.-+ +.+.-+..++..+. -.+.++|
T Consensus 284 ~~~D~VLIDTAGr~~~d---------------~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI 348 (407)
T PRK12726 284 NCVDHILIDTVGRNYLA---------------EESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFI 348 (407)
T ss_pred CCCCEEEEECCCCCccC---------------HHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEE
Confidence 57899999999885421 2444555555555544444555432 23333333333332 2255555
Q ss_pred E
Q 024971 83 L 83 (260)
Q Consensus 83 l 83 (260)
+
T Consensus 349 ~ 349 (407)
T PRK12726 349 I 349 (407)
T ss_pred E
Confidence 4
No 423
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=2.1e+02 Score=22.17 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCceEEEEeChhh---HHHHHHHhhCccchhhceEeccC
Q 024971 43 LNDFCKDVVKDQAFFICNSIGG---LVGLQAAVMEPEICRGMILLNIS 87 (260)
Q Consensus 43 ~~~~~~~~~~~~~~lvGhS~Gg---~~a~~~a~~~p~~v~~lvl~~~~ 87 (260)
+..++..+...+++|+|-| |= -+=..++..+|++|.++..=+..
T Consensus 268 l~nil~~~p~~kfvLVGDs-GE~DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 268 LRNILRRYPDRKFVLVGDS-GEHDPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred HHHHHHhCCCceEEEecCC-CCcCHHHHHHHHHhCccceeeEeeeecc
Confidence 3446666777789999976 32 23334566799999888766654
No 424
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.21 E-value=2.3e+02 Score=21.86 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCC--CCCCCCCccHHHHHHHHHHHHHhhcCCce------EEEEeCh-----------
Q 024971 2 VLAKSHRVYSIDLIGYGYSDKPNPR--DFFDKPFYTFETWASQLNDFCKDVVKDQA------FFICNSI----------- 62 (260)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~lvGhS~----------- 62 (260)
.|..||.|+++|---.|........ .+ ..-++.| .+-+.++++...++-+ ..||-|+
T Consensus 20 Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f---~~gDi~D-~~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv 95 (329)
T COG1087 20 LLKTGHEVVVLDNLSNGHKIALLKLQFKF---YEGDLLD-RALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNV 95 (329)
T ss_pred HHHCCCeEEEEecCCCCCHHHhhhccCce---EEecccc-HHHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhch
Confidence 3578999999998877765443310 00 0011111 1134455555554432 3567775
Q ss_pred hhHHHHH-HHhhCccchhhceEeccCcccc
Q 024971 63 GGLVGLQ-AAVMEPEICRGMILLNISLRML 91 (260)
Q Consensus 63 Gg~~a~~-~a~~~p~~v~~lvl~~~~~~~~ 91 (260)
+|.+.+. .+.++ .|+.+|+.+++....
T Consensus 96 ~gTl~Ll~am~~~--gv~~~vFSStAavYG 123 (329)
T COG1087 96 VGTLNLIEAMLQT--GVKKFIFSSTAAVYG 123 (329)
T ss_pred HhHHHHHHHHHHh--CCCEEEEecchhhcC
Confidence 3444443 33333 399999998876443
No 425
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.03 E-value=2.6e+02 Score=19.03 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=17.0
Q ss_pred CCceEEEEeChhhHHHHHHHhh
Q 024971 52 KDQAFFICNSIGGLVGLQAAVM 73 (260)
Q Consensus 52 ~~~~~lvGhS~Gg~~a~~~a~~ 73 (260)
.++++++|....+.+|..++.+
T Consensus 30 a~~I~i~G~G~S~~~A~~~~~~ 51 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKAFAMR 51 (179)
T ss_pred CCEEEEEecCHHHHHHHHHHHH
Confidence 4689999988777777777654
Done!