BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024972
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG +CG F + + + P NF + PYF ++
Sbjct: 174 QIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 214
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG +CG F + + + P NF + PYF ++
Sbjct: 187 EIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 227
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG +CG F + + + P NF + PYF ++
Sbjct: 179 EIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 219
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG +CG F + + + P NF + PYF ++
Sbjct: 175 EIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 196 LVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWF 242
L PKVP+Q N +CG ++L ++ F + NF L P +EK WF
Sbjct: 252 LCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEK-WF 294
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG + G F + + + P NF + PYF ++
Sbjct: 154 EIPQQMNGSDSGMFACKYADCITKDRPINFTQQHMPYFRKR 194
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG + G F + + + P NF + PYF ++
Sbjct: 175 EIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG +CG F + + P F P F +K
Sbjct: 175 EIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK 215
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 171 CWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNL 230
W+ D +K +++P T+E +++ L G+E N LY ++LF GA EN L
Sbjct: 76 IWWTSDEFKNDNKPVTEEAWAQLKALA--------GKELSNKPLYVVDLFC-GANENTRL 126
Query: 231 EDYPYFMEKNW 241
+ + ME W
Sbjct: 127 K-IRFVMEVAW 136
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
++PQQ NG + G F + + P F P F +K
Sbjct: 181 EIPQQLNGSDSGMFTCKYADYISRDKPITFTQHQMPLFRKK 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,667
Number of Sequences: 62578
Number of extensions: 317308
Number of successful extensions: 532
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 22
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)