Query 024972
Match_columns 259
No_of_seqs 136 out of 706
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 2.5E-37 8.6E-42 286.0 9.1 171 83-257 26-309 (323)
2 2xph_A Sentrin-specific protea 100.0 3.5E-35 1.2E-39 260.6 7.3 152 87-239 41-227 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 3E-35 1E-39 259.0 5.7 153 87-240 29-216 (226)
4 2bkr_A Sentrin-specific protea 100.0 2.7E-33 9.1E-38 244.0 9.4 162 88-257 9-205 (212)
5 1euv_A ULP1 protease; SUMO hyd 100.0 8.5E-34 2.9E-38 249.2 3.6 147 86-238 29-209 (221)
6 2oix_A Xanthomonas outer prote 100.0 4.4E-29 1.5E-33 214.3 5.6 147 102-257 1-177 (186)
7 1g6u_A Domain swapped dimer; d 20.0 52 0.0018 20.9 1.8 21 238-258 13-33 (48)
8 1cch_A Cytochrome C551; electr 19.5 1.9E+02 0.0065 19.0 4.9 36 219-258 47-82 (82)
9 2cxa_A Leucyl/phenylalanyl-tRN 14.5 84 0.0029 27.7 2.4 20 101-120 124-143 (256)
10 4ekf_A Adenain; alpha and beta 13.7 3.5E+02 0.012 22.8 5.9 27 198-224 111-137 (204)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=286.04 Aligned_cols=171 Identities=23% Similarity=0.398 Sum_probs=131.8
Q ss_pred ccCCCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCc----------------c
Q 024972 83 LIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPS----------------S 146 (259)
Q Consensus 83 ~~~~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~----------------~ 146 (259)
|..++.+++|+.+|+.+|.+++||||+||||||+||..+.........+|++|+||++.|... +
T Consensus 26 ~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~ 105 (323)
T 3eay_A 26 PPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRR 105 (323)
T ss_dssp CTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHH
T ss_pred CCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHH
Confidence 345789999999999999999999999999999999654433222345778888888877532 4
Q ss_pred hHHHHHHhhhcCCcccceEEEee---eccch-------------------------------------------------
Q 024972 147 KAKVLTWIKRKHIFSKKYVLVPI---VCWFV------------------------------------------------- 174 (259)
Q Consensus 147 ~~~V~rw~k~~~Lf~kd~IfIPI---~HW~v------------------------------------------------- 174 (259)
|.+|++|+++++||++|+||||| .||++
T Consensus 106 y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 185 (323)
T 3eay_A 106 HKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLS 185 (323)
T ss_dssp HTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------------
T ss_pred HHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999 89932
Q ss_pred ----------------------hhccccCCch---------------HHHhhh--------cCCCCCCCCCCCCcCCCch
Q 024972 175 ----------------------MDIYKAEDRP---------------ETKELI--------SRIPLLVPKVPQQRNGEEC 209 (259)
Q Consensus 175 ----------------------lDsl~s~~~~---------------e~k~~i--------~~i~~~~~~~PqQ~Ng~DC 209 (259)
|-+|||++.. |++.+- ..++...+++|||.||+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DC 265 (323)
T 3eay_A 186 AEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDC 265 (323)
T ss_dssp --------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCH
T ss_pred cccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcH
Confidence 1122343321 111110 0122235789999999999
Q ss_pred hHHHHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972 210 GNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS 257 (259)
Q Consensus 210 GvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~ 257 (259)
|||||+||++|+.++|.+|++ |.. ..+||+|++|.++|++|++|
T Consensus 266 Gvfvl~~~e~~~~~~~~~f~~---~~~-~~~wf~~~~i~~kR~ei~~L 309 (323)
T 3eay_A 266 GVYLLQYVESFFKDPIVNFEL---PIH-LEKWFPRHVIKTKREDIREL 309 (323)
T ss_dssp HHHHHHHHHHHHHSCCCCCCS---SCB-CTTSSCHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccc---ccc-cccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999985 333 36899999999999999875
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=3.5e-35 Score=260.61 Aligned_cols=152 Identities=25% Similarity=0.395 Sum_probs=120.2
Q ss_pred CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972 87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL 166 (259)
Q Consensus 87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If 166 (259)
+..++|+.+|+.+|.+++||||+|||||+++|.+.... ...+.++++++||++.+...+|+.|++|+++++||++++||
T Consensus 41 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~-~~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~ 119 (238)
T 2xph_A 41 AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE-KGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILL 119 (238)
T ss_dssp ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTS-TTSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEE
T ss_pred CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhh-cCCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCEEE
Confidence 44678999999999999999999999999999764432 22345777888888777777899999999999999999999
Q ss_pred Eee---eccchh---------hccccCCchHH---Hhh---h-------cCCC----------CCCCCCCCCcCCCchhH
Q 024972 167 VPI---VCWFVM---------DIYKAEDRPET---KEL---I-------SRIP----------LLVPKVPQQRNGEECGN 211 (259)
Q Consensus 167 IPI---~HW~vl---------Dsl~s~~~~e~---k~~---i-------~~i~----------~~~~~~PqQ~Ng~DCGv 211 (259)
||| +||+++ -+|||++.... +.+ + .+.+ ....++|||.||+||||
T Consensus 120 iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGv 199 (238)
T 2xph_A 120 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGM 199 (238)
T ss_dssp EEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHH
T ss_pred EcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHH
Confidence 999 899421 13444433211 110 0 1111 13578999999999999
Q ss_pred HHHHHHHHHhcCCCCccCCCCCcchhhc
Q 024972 212 FVLYFINLFVEGAPENFNLEDYPYFMEK 239 (259)
Q Consensus 212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~ 239 (259)
|||+||++++.+.|.+|+|+|||+||++
T Consensus 200 fvl~~~e~~~~~~~~~f~q~dm~~~R~~ 227 (238)
T 2xph_A 200 FACKYADCITKDRPINFTQQHMPYFRKR 227 (238)
T ss_dssp HHHHHHHHHHTTCCCCCCGGGHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcChhhHHHHHHH
Confidence 9999999999999999999999999976
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3e-35 Score=258.99 Aligned_cols=153 Identities=21% Similarity=0.306 Sum_probs=119.3
Q ss_pred CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972 87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL 166 (259)
Q Consensus 87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If 166 (259)
+..++|+.+|+.+|.+++||||+|||||+++|.+....+ ..+.++++++||+..+...++++|++|+++++||++++||
T Consensus 29 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~-~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~ 107 (226)
T 1th0_A 29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIIL 107 (226)
T ss_dssp ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH-TCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEE
T ss_pred cCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc-cCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEE
Confidence 346789999999999999999999999999997643322 2334667778888777667889999999999999999999
Q ss_pred Eee---eccc------------hhhccccCCchH-----------HHhhh------cCCC---CCCCCCCCCcCCCchhH
Q 024972 167 VPI---VCWF------------VMDIYKAEDRPE-----------TKELI------SRIP---LLVPKVPQQRNGEECGN 211 (259)
Q Consensus 167 IPI---~HW~------------vlDsl~s~~~~e-----------~k~~i------~~i~---~~~~~~PqQ~Ng~DCGv 211 (259)
||| +||+ ++||+.+..... ++.+. ..+. +...++|||.||+||||
T Consensus 108 iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGv 187 (226)
T 1th0_A 108 VPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGM 187 (226)
T ss_dssp EEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHH
T ss_pred EeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHH
Confidence 999 8994 334443322111 11110 0111 13579999999999999
Q ss_pred HHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972 212 FVLYFINLFVEGAPENFNLEDYPYFMEKN 240 (259)
Q Consensus 212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~~ 240 (259)
|||+||++++.+.|.+|+|+|||+||+++
T Consensus 188 fvl~~~~~~~~~~~~~f~q~dm~~~R~~~ 216 (226)
T 1th0_A 188 FTCKYADYISRDKPITFTQHQMPLFRKKM 216 (226)
T ss_dssp HHHHHHHHHTTTCCCCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccChhhHHHHHHHH
Confidence 99999999999999999999999999763
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=2.7e-33 Score=244.03 Aligned_cols=162 Identities=14% Similarity=0.209 Sum_probs=120.1
Q ss_pred CccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeec--cccccccCCcchHHHHHHhhhcCCcccceE
Q 024972 88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDS--LWFDLYRKPSSKAKVLTWIKRKHIFSKKYV 165 (259)
Q Consensus 88 ~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s--~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~I 165 (259)
..++|+.+|+.+|.+++||||+|||||++||.+....+....++++++ +||+..+. +++.|++|+++++++++++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~--~~~~v~~~~~~~~l~~~~~i 86 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS--NPAEIAMFLEPLDLPNKRVV 86 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC--CHHHHHHHHGGGTGGGCSEE
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC--CHHHHHHHhcccccccCCEE
Confidence 357899999999999999999999999999987654333333444442 66666543 47889999999999999999
Q ss_pred EEee----------eccchh---------hccccCCchHH---Hhhh-----------cCCCCCCCCCCCCcCCCchhHH
Q 024972 166 LVPI----------VCWFVM---------DIYKAEDRPET---KELI-----------SRIPLLVPKVPQQRNGEECGNF 212 (259)
Q Consensus 166 fIPI----------~HW~vl---------Dsl~s~~~~e~---k~~i-----------~~i~~~~~~~PqQ~Ng~DCGvf 212 (259)
|||| +||+++ -.|||++.... +.+. .+..+...++|||.||+|||||
T Consensus 87 ~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~~~~~~~~~~PqQ~N~~DCGvf 166 (212)
T 2bkr_A 87 FLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMY 166 (212)
T ss_dssp EEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHH
T ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccccceEeECCCCCCCCCCcHHHH
Confidence 9999 599421 13455543322 1111 1122456899999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972 213 VLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS 257 (259)
Q Consensus 213 VL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~ 257 (259)
||+||++++.+.... +. +....||+++++.++|++|.++
T Consensus 167 vl~~~~~l~~~~~~~---~~---~~~~~~~~~~~i~~~R~~i~~l 205 (212)
T 2bkr_A 167 VICNTEALCQNFFRQ---QT---ESLLQLLTPAYITKKRGEWKDL 205 (212)
T ss_dssp HHHHHHHHHHHHHSC---CC---CCHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhc---Cc---ccccccCCHHHHHHHHHHHHHH
Confidence 999999999986221 11 1135899999999999998764
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.98 E-value=8.5e-34 Score=249.17 Aligned_cols=147 Identities=19% Similarity=0.281 Sum_probs=112.8
Q ss_pred CCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhh--hcCCcccc
Q 024972 86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK--RKHIFSKK 163 (259)
Q Consensus 86 ~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k--~~~Lf~kd 163 (259)
++..++|+.+|+.+|.+++||||+|||||++||.+.. +.++++++||+..+...+|+.|++|++ ++++|+++
T Consensus 29 ~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~------~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~ 102 (221)
T 1euv_A 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST------PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLD 102 (221)
T ss_dssp EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS------TTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCS
T ss_pred cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC------CCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCC
Confidence 4567899999999999999999999999999997543 124566777777776678999999998 67999999
Q ss_pred eEEEee----eccc------------hhhccccCCchHH-------Hhhh-----c----CCCCCCCCCCCCcCCCchhH
Q 024972 164 YVLVPI----VCWF------------VMDIYKAEDRPET-------KELI-----S----RIPLLVPKVPQQRNGEECGN 211 (259)
Q Consensus 164 ~IfIPI----~HW~------------vlDsl~s~~~~e~-------k~~i-----~----~i~~~~~~~PqQ~Ng~DCGv 211 (259)
+||||| +||+ ++||+........ +..+ . .+++...++|||.||+||||
T Consensus 103 ~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGv 182 (221)
T 1euv_A 103 KIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGI 182 (221)
T ss_dssp EEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHH
T ss_pred EEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHH
Confidence 999999 6994 3344432222211 0101 1 12234578999999999999
Q ss_pred HHHHHHHHHhcCCCCccCCCCCcchhh
Q 024972 212 FVLYFINLFVEGAPENFNLEDYPYFME 238 (259)
Q Consensus 212 fVL~~a~~l~~~~p~~f~~~dmp~fr~ 238 (259)
|||+||++++.+.|.+|+++|||.+|+
T Consensus 183 fv~~~~~~~~~~~~l~f~~~d~~~~R~ 209 (221)
T 1euv_A 183 YVCMNTLYGSADAPLDFDYKDAIRMRR 209 (221)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence 999999999999988877777776664
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.95 E-value=4.4e-29 Score=214.33 Aligned_cols=147 Identities=15% Similarity=0.173 Sum_probs=94.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcccccCCeeeeecc---ccccccCCcchHHHHHHhhhcCCcccceEEEee----eccch
Q 024972 102 KKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSL---WFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI----VCWFV 174 (259)
Q Consensus 102 ~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~---FF~~~l~~~~~~~V~rw~k~~~Lf~kd~IfIPI----~HW~v 174 (259)
+++||||+|||||++||.+..........++|.++ ||.......++.++.+|++..++ +++||||| +||++
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsL 78 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAHWSL 78 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCccEE
Confidence 47899999999999999876543322232455553 33333322345677788776665 99999999 69942
Q ss_pred ---------h---hccccCCchH--HHhhh---------cCCCCCCCCCCCCcCCCchhHHHHHHHHHHhcCCCCccCCC
Q 024972 175 ---------M---DIYKAEDRPE--TKELI---------SRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLE 231 (259)
Q Consensus 175 ---------l---Dsl~s~~~~e--~k~~i---------~~i~~~~~~~PqQ~Ng~DCGvfVL~~a~~l~~~~p~~f~~~ 231 (259)
+ -.|||++... .+.+. ...++...++|||.||||||||||+||++++++....
T Consensus 79 lvi~~~~~~~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~---- 154 (186)
T 2oix_A 79 LVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDG---- 154 (186)
T ss_dssp EEEECSSTTSCEEEEECCCSSCCHHHHHHHHHHHHHTTCCGGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHT----
T ss_pred EEEECCCCeeeeeEEEcCCCCCCHHHHHHHHHHHHHhCCCccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc----
Confidence 2 2355554422 11111 1123456789999999999999999999999753110
Q ss_pred CCcchhhcCCcChHhHHHHHHHhhhc
Q 024972 232 DYPYFMEKNWFTAEDLDCFCERLNSS 257 (259)
Q Consensus 232 dmp~fr~~~wF~~e~~~~~r~~l~~~ 257 (259)
.. ....||+++++.++|++|.++
T Consensus 155 ~~---~~~~~~~~~~i~~~R~~i~~l 177 (186)
T 2oix_A 155 TF---DYAGGRDLTDIEPDRGLIRDR 177 (186)
T ss_dssp CT---TSTTTTCBTTCCCCHHHHHHH
T ss_pred Cc---cCCCcCCHHHHHHHHHHHHHH
Confidence 00 113688999999999988764
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.03 E-value=52 Score=20.93 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.5
Q ss_pred hcCCcChHhHHHHHHHhhhcc
Q 024972 238 EKNWFTAEDLDCFCERLNSSE 258 (259)
Q Consensus 238 ~~~wF~~e~~~~~r~~l~~~~ 258 (259)
++.=|+||++.++-.+|+.||
T Consensus 13 kkegfspeelaaleselqale 33 (48)
T 1g6u_A 13 KKEGFSPEELAALESELQALE 33 (48)
T ss_dssp HHTTCSHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 356799999999999988875
No 8
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=19.50 E-value=1.9e+02 Score=18.96 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhcc
Q 024972 219 LFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSE 258 (259)
Q Consensus 219 ~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~~ 258 (259)
.+..+.........||.| -++++|+.++-.-|.+|.
T Consensus 47 ~i~~g~~~~~~~~~Mp~~----~ls~~ei~~l~~yl~~l~ 82 (82)
T 1cch_A 47 HIKNGSQGVWGPIPMPPN----PVTEEEAKILAEWVLSLK 82 (82)
T ss_dssp HHHTCCCSSSSSCCCCCC----SCCHHHHHHHHHHHHHCC
T ss_pred HhhcCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHhcC
Confidence 333333333333458887 479999999999998874
No 9
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=14.50 E-value=84 Score=27.66 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=16.5
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 024972 101 RKKNKLDSGKFEHLLDNLWR 120 (259)
Q Consensus 101 ~~~~WLND~IInfYle~L~~ 120 (259)
+++.||+++||+.|.++-..
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~ 143 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHEL 143 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999754
No 10
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=13.72 E-value=3.5e+02 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCCCCCcCCCchhHHHHHHHHHHhcCC
Q 024972 198 PKVPQQRNGEECGNFVLYFINLFVEGA 224 (259)
Q Consensus 198 ~~~PqQ~Ng~DCGvfVL~~a~~l~~~~ 224 (259)
...-|=.++--||+|.|.|..+|...+
T Consensus 111 tqsVQcp~SaACGLFC~lFL~aF~~~p 137 (204)
T 4ekf_A 111 TQSVQGPNSAAAGLFCCMFLHAFANWP 137 (204)
T ss_dssp CSBCSCTTCCCHHHHHHHHHHHHHHCT
T ss_pred cccccCcCchhHHHHHHHHHHHHHhCC
Confidence 445566789999999999999999765
Done!