BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024973
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 111 NNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170
+ SS +YQ LG+ +A +EIK AY +L+K+YHPDT K A EKF +L E Y+VLS
Sbjct: 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLS 61
Query: 171 NEESRRFYD 179
+E R+ YD
Sbjct: 62 DEVKRKQYD 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y +G+ P+ DL+ IK+AYRRL+++YHPD + P A +F ++ E ++VLS+E+ R
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA 64
Query: 177 FYD 179
YD
Sbjct: 65 EYD 67
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 111 NNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170
+ SS +Y+ LG+S A E++K AYRRL+ ++HPD P A+E F + Y VLS
Sbjct: 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP--GATEAFKAIGTAYAVLS 60
Query: 171 NEESRRFYD 179
N E R+ YD
Sbjct: 61 NPEKRKQYD 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
Y+ LG+S +A +IK AY++L++E+HPD P A ++F+++ + Y++LSNEE R
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRTN 77
Query: 178 YD 179
YD
Sbjct: 78 YD 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y LG+ P+ DL+ IK+AYRRL+++YHPD + A KF L E ++VL +E+ R
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK--ENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 177 FYD 179
YD
Sbjct: 88 EYD 90
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+YQ LG++ A EEIK AYRR + YHPD P A EKF ++ E YDVLS+ R
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE 62
Query: 177 FYD 179
+D
Sbjct: 63 IFD 65
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
++Y LG+ P+A EE+K AYR+L+ +YHPD EKF ++ + Y+VLS+ + R
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNP----NEGEKFKQISQAYEVLSDAKKR 62
Query: 176 RFYD 179
YD
Sbjct: 63 ELYD 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y+ LG+S +A+ EI+ AY+RL+ +YHPD K A KF +++E Y+VL++ + R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
YD
Sbjct: 64 AYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y+ LG+S +A+ EI+ AY+RL+ +YHPD K A KF +++E Y+VL++ + R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
YD
Sbjct: 64 AYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y+ LG+S +A+ EI+ AY+RL+ +YHPD K A KF +++E Y+VL++ + R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
YD
Sbjct: 64 AYD 66
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
++Y+ LG+ SA E+IK AYR+L+ +HPD + A +KF + E Y+VLS+ + R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 176 RFYD 179
YD
Sbjct: 70 SLYD 73
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPD--TTSLP---LKAASEKFLKLREVYDVLSNE 172
Y LG PSA++ ++K Y++L YHPD +T +P ++ +KF+++ + + +L NE
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 173 ESRRFYD 179
E++R YD
Sbjct: 73 ETKREYD 79
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
+Y LG+ P A E+K AYR+++ ++HPD +E+F ++ + Y+VLS+E+ R
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP----DGAEQFKQISQAYEVLSDEKKR 64
Query: 176 RFYD 179
+ YD
Sbjct: 65 QIYD 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
Y LG+SPSA+ +E+K YR+ + +YHPD + +EKF ++ E +++L++ + R
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPT----GDTEKFKEISEAFEILNDPQKREI 66
Query: 178 YD 179
YD
Sbjct: 67 YD 68
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAAS-----EKFLKLREVYDVLSNE 172
Y LG PSA++ ++K Y++L YHPD S + A + +KF+++ + + +L NE
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 173 ESRRFYD 179
E+++ YD
Sbjct: 79 ETKKKYD 85
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
S+Y+ L + SA ++IK AYRR + ++HPD + A +KF ++ E Y+VLS++ R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 176 RFYD 179
YD
Sbjct: 63 EIYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y LG+ SA +IK A+ +L+ +YHPD P A KF ++ E Y+ LS+ R+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP--DAEAKFREIAEAYETLSDANRRK 66
Query: 177 FYDWTLAQEA 186
YD TL A
Sbjct: 67 EYD-TLGHSA 75
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
+Y+ L + A E IK AYR+L+ ++HPD + A +F ++ E Y+VLS+ + R
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 177 FYD 179
YD
Sbjct: 71 IYD 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 110 LNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVL 169
L+ S +S Y LG+ +A ++IK +YR+L+ +YHPD +AA +KF ++ + +L
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAA-DKFKEINNAHAIL 70
Query: 170 SNEESRRFYD 179
++ R YD
Sbjct: 71 TDATKRNIYD 80
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
Y LG+ +A +IK+AY R YHPD S +AA E+F ++ + Y VL + RR
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAA-ERFTRISQAYVVLGSATLRRK 78
Query: 178 YDWTL 182
YD L
Sbjct: 79 YDRGL 83
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
Y LG+S +A EI+ A+++L+ + HPD A + FLK+ Y+VL +E+ R+
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD-FLKINRAYEVLKDEDLRKK 82
Query: 178 YD 179
YD
Sbjct: 83 YD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
Y LG+S +A EI+ A+++L+ + HPD A + FLK+ Y+VL +E+ R+
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD-FLKINRAYEVLKDEDLRKK 63
Query: 178 YD 179
YD
Sbjct: 64 YD 65
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173
++ +Y LG + +E+I + ++ + E HPD KA E F KL++ ++L+NEE
Sbjct: 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV-ETFQKLQKAKEILTNEE 77
Query: 174 SRRFYD-WTLAQ 184
SR YD W +Q
Sbjct: 78 SRARYDHWRRSQ 89
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 86 HQTNQNFNAEEEQKNLLGEKFADLLNNSSD-SHYQFLGISPSADLEEIKSAYRRLSKEYH 144
++T Q N ++Q EK LL S +Y+ LG+ +A +EI AYR+L+ ++H
Sbjct: 352 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Query: 145 PDT--TSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
PD K A +KF+ + +VLS+ E R+ +D
Sbjct: 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 86 HQTNQNFNAEEEQKNLLGEKFADLLNNSSD-SHYQFLGISPSADLEEIKSAYRRLSKEYH 144
++T Q N ++Q EK LL S +Y+ LG+ +A +EI AYR+L+ ++H
Sbjct: 352 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Query: 145 PDT--TSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
PD K A +KF+ + +VLS+ E R+ +D
Sbjct: 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 110 LNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP 151
+ NS DS + LG+ P A +E+ AYR+L+ HPD P
Sbjct: 23 IRNSKDS-WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGIS-PSADLEEIKSAYRRLSKEYHPDTTSLPLKA--AS 156
N +G FA L ++ Y L ++ D +++ AYR L++++HPD + A
Sbjct: 2 NAVG--FAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAE 59
Query: 157 EKFLKLREVYDVLSNEESRRFYDWTL 182
E+F + Y+ L ++E++ YD+ L
Sbjct: 60 ERFRVIATAYETLKDDEAKTNYDYYL 85
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 72 NEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEE 131
+ E +G ++ S N + N + K L+G KFAD S H+ F +S +
Sbjct: 65 TDTERLVGDAAKSQAALNPH-NTVFDAKRLIGRKFADTTVQSDMKHWPFRVVSEGGK-PK 122
Query: 132 IKSAYRRLSKEYHPDTTS 149
++ YR K ++P+ S
Sbjct: 123 VRVCYRGEDKTFYPEEIS 140
>pdb|3GU1|A Chain A, Y97w Mutant In Organophosphorus Hydrolase From Deinococcus
Radiodurans
Length = 337
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 263 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 303
>pdb|2LL0|A Chain A, Nmr Structure Of The Putative Atpase Regulatory Protein
Yp_916642.1 From Paracoccus Denitrificans
Length = 104
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 85 SHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEE--IKSAYRRLSKE 142
+H NF AE + LLGE A LL + D + ++D +E + +R+L+ +
Sbjct: 16 AHDAELNFKAEARRNRLLGEWAAGLLGKTGDDARAYALTVVTSDFDEPGDEDVFRKLAAD 75
Query: 143 YHPDTTSLPLKAASEKFLKLR 163
++A K ++LR
Sbjct: 76 LEGKADEETIRA---KMVELR 93
>pdb|1M3S|A Chain A, Crystal Structure Of Yckf From Bacillus Subtilis
pdb|1M3S|B Chain B, Crystal Structure Of Yckf From Bacillus Subtilis
Length = 186
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 18 KTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQP 62
K+ HG + LT P ++ + I+R+ S K SN S + QP
Sbjct: 103 KSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQP 147
>pdb|1VIV|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VIV|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 197
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 18 KTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQP 62
K+ HG + LT P ++ + I+R+ S K SN S + QP
Sbjct: 104 KSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQP 148
>pdb|3HTW|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
With Cacodylate Bound
Length = 328
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 254 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 294
>pdb|3FDK|A Chain A, Crystal Structure Of Hydrolase Dr0930 With Promiscuous
Catalytic Activity
Length = 323
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 249 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 289
>pdb|3GU9|A Chain A, R228a Mutation In Organophosphorus Hydrolase From
Deinococcu Radiodurans
Length = 331
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 257 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 297
>pdb|2ZC1|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
Length = 333
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 259 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 299
>pdb|3GU2|A Chain A, Y97lG100-E101- Mutant In Organophosphorus Hydrolase
Length = 336
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 262 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 302
>pdb|3GTH|A Chain A, D71gE101GM234I MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 263 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 303
>pdb|3GTX|A Chain A, D71gE101G MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM
DEINOCO Radiodurans
Length = 339
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 265 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 305
>pdb|3GTI|A Chain A, D71gE101GM234L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 263 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 303
>pdb|3GTF|A Chain A, D71gE101GV235L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 100 NLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHP 145
LLGE +AD L S DS + +LG P+ I A K++HP
Sbjct: 263 TLLGEGYADRLLLSHDSIWHWLGRPPA-----IPEAALPAVKDWHP 303
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 65 NTVFDAKRLIGRKFGDPVVQSDXKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 120
>pdb|2VUG|A Chain A, The Structure Of An Archaeal Homodimeric Rna Ligase
pdb|2VUG|B Chain B, The Structure Of An Archaeal Homodimeric Rna Ligase
Length = 389
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 116 SHYQFLGISPS-ADLEEIKSAYRRLSKEYHPDTTS 149
+H++ LG+ D+EEIK +R K +PD T+
Sbjct: 342 THFEKLGLKIEIVDIEEIKDGWRITFKRLYPDATN 376
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 65 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 120
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 65 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 120
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 63 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 118
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 69 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 124
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 68 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 123
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 68 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 123
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 NAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTS 149
N + K L+G KF D + S H+ F I+ D +++ +Y+ +K ++P+ S
Sbjct: 87 NTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIN-DGDKPKVQVSYKGETKAFYPEEIS 142
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 7 VSPQSPYSLFLKTQHGSLQQLTKEPRAATA-------RTRSKILRVFASQKAGSNKSQRR 59
+ P S +S+FL + GS +++ + ++ R+KI++ S + + QRR
Sbjct: 247 LKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRR 306
Query: 60 AQPGVDTRIHWE 71
+D + W+
Sbjct: 307 LGANLDVDVSWQ 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,787,247
Number of Sequences: 62578
Number of extensions: 251789
Number of successful extensions: 717
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 60
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)