Query 024973
Match_columns 259
No_of_seqs 270 out of 1713
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 7.9E-25 1.7E-29 204.5 6.6 74 113-187 2-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.1E-23 2.5E-28 192.8 8.1 76 113-189 14-89 (336)
3 KOG0712 Molecular chaperone (D 99.8 7E-21 1.5E-25 175.9 7.6 71 114-188 3-73 (337)
4 PRK14288 chaperone protein Dna 99.8 1.6E-20 3.4E-25 177.3 7.0 71 114-185 2-72 (369)
5 PRK14296 chaperone protein Dna 99.8 3E-20 6.5E-25 175.6 6.9 70 114-185 3-72 (372)
6 PRK14279 chaperone protein Dna 99.8 1.1E-19 2.4E-24 172.7 7.4 69 114-183 8-76 (392)
7 PRK14286 chaperone protein Dna 99.8 2E-19 4.3E-24 170.0 7.4 72 114-186 3-74 (372)
8 PRK14282 chaperone protein Dna 99.8 3E-19 6.4E-24 168.6 7.0 72 114-185 3-74 (369)
9 PRK14287 chaperone protein Dna 99.8 4.8E-19 1.1E-23 167.3 7.0 70 114-185 3-72 (371)
10 KOG0716 Molecular chaperone (D 99.8 6.5E-19 1.4E-23 157.3 6.9 74 114-188 30-103 (279)
11 PF00226 DnaJ: DnaJ domain; I 99.8 9.3E-19 2E-23 125.0 6.4 64 116-179 1-64 (64)
12 PRK14283 chaperone protein Dna 99.8 6.7E-19 1.5E-23 166.7 7.0 70 114-185 4-73 (378)
13 PRK14285 chaperone protein Dna 99.8 7.3E-19 1.6E-23 165.8 7.0 70 115-185 3-72 (365)
14 PTZ00037 DnaJ_C chaperone prot 99.8 6E-19 1.3E-23 169.0 6.2 67 114-185 27-93 (421)
15 PRK14298 chaperone protein Dna 99.8 6.9E-19 1.5E-23 166.6 6.3 70 114-185 4-73 (377)
16 PRK14276 chaperone protein Dna 99.8 7.4E-19 1.6E-23 166.5 6.3 70 114-185 3-72 (380)
17 PRK14299 chaperone protein Dna 99.8 9.7E-19 2.1E-23 160.3 6.8 70 114-185 3-72 (291)
18 PRK14277 chaperone protein Dna 99.8 1.1E-18 2.3E-23 165.7 7.3 71 114-185 4-74 (386)
19 PRK14278 chaperone protein Dna 99.8 1.2E-18 2.6E-23 165.1 7.0 68 115-184 3-70 (378)
20 PRK14291 chaperone protein Dna 99.7 1.2E-18 2.6E-23 165.3 6.9 70 114-185 2-71 (382)
21 PRK14294 chaperone protein Dna 99.7 1.5E-18 3.2E-23 163.8 7.3 71 114-185 3-73 (366)
22 KOG0717 Molecular chaperone (D 99.7 1.7E-18 3.6E-23 163.8 7.2 77 113-189 6-82 (508)
23 PRK14280 chaperone protein Dna 99.7 1.5E-18 3.3E-23 164.2 6.7 70 114-185 3-72 (376)
24 PRK14301 chaperone protein Dna 99.7 1.6E-18 3.4E-23 163.9 6.7 71 114-185 3-73 (373)
25 PRK14295 chaperone protein Dna 99.7 1.7E-18 3.8E-23 164.5 7.0 66 114-180 8-73 (389)
26 PRK14297 chaperone protein Dna 99.7 1.5E-18 3.3E-23 164.4 5.9 71 114-185 3-73 (380)
27 PRK14284 chaperone protein Dna 99.7 2.1E-18 4.6E-23 164.0 7.0 70 115-185 1-70 (391)
28 PRK14281 chaperone protein Dna 99.7 3E-18 6.6E-23 163.2 7.0 71 115-186 3-73 (397)
29 KOG0691 Molecular chaperone (D 99.7 2.8E-18 6.2E-23 156.8 6.3 75 114-189 4-78 (296)
30 PRK10767 chaperone protein Dna 99.7 4.1E-18 8.9E-23 160.9 7.1 71 114-185 3-73 (371)
31 KOG0715 Molecular chaperone (D 99.7 6.6E-18 1.4E-22 154.6 7.0 69 115-185 43-111 (288)
32 PRK14290 chaperone protein Dna 99.7 6.5E-18 1.4E-22 159.3 6.8 71 115-185 3-73 (365)
33 KOG0718 Molecular chaperone (D 99.7 8.4E-18 1.8E-22 159.3 6.1 74 114-187 8-83 (546)
34 PRK14300 chaperone protein Dna 99.7 1.1E-17 2.5E-22 158.0 6.5 69 115-185 3-71 (372)
35 TIGR02349 DnaJ_bact chaperone 99.7 1.2E-17 2.7E-22 156.7 6.5 68 116-185 1-68 (354)
36 PRK14289 chaperone protein Dna 99.7 1.8E-17 3.8E-22 157.4 7.4 71 114-185 4-74 (386)
37 PRK10266 curved DNA-binding pr 99.7 2E-17 4.3E-22 152.6 7.1 67 115-183 4-70 (306)
38 PRK14293 chaperone protein Dna 99.7 2.4E-17 5.3E-22 155.9 6.9 70 114-185 2-71 (374)
39 KOG0719 Molecular chaperone (D 99.7 1.6E-17 3.4E-22 145.7 5.0 73 113-185 12-85 (264)
40 PRK14292 chaperone protein Dna 99.7 2.6E-17 5.6E-22 155.5 6.7 69 115-185 2-70 (371)
41 PTZ00341 Ring-infected erythro 99.7 4.1E-17 8.9E-22 165.9 7.1 71 114-186 572-642 (1136)
42 smart00271 DnaJ DnaJ molecular 99.7 1.2E-16 2.7E-21 112.2 6.5 59 115-173 1-59 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.6 5.1E-16 1.1E-20 107.1 6.5 55 116-171 1-55 (55)
44 COG2214 CbpA DnaJ-class molecu 99.6 1.2E-15 2.6E-20 129.9 6.9 69 114-182 5-73 (237)
45 PHA03102 Small T antigen; Revi 99.6 1.6E-15 3.5E-20 126.8 4.1 66 115-185 5-72 (153)
46 TIGR03835 termin_org_DnaJ term 99.6 4.1E-15 8.9E-20 148.6 7.1 69 115-185 2-70 (871)
47 KOG0721 Molecular chaperone (D 99.6 5.9E-15 1.3E-19 128.3 6.7 71 113-184 97-167 (230)
48 KOG0624 dsRNA-activated protei 99.5 8.9E-15 1.9E-19 135.4 6.3 85 97-181 376-462 (504)
49 KOG0550 Molecular chaperone (D 99.5 1.1E-14 2.5E-19 136.9 5.6 87 95-181 353-439 (486)
50 PRK05014 hscB co-chaperone Hsc 99.5 5.3E-14 1.2E-18 119.9 7.7 69 115-183 1-75 (171)
51 KOG0720 Molecular chaperone (D 99.5 3.5E-14 7.5E-19 134.7 6.8 73 114-188 234-306 (490)
52 PRK01356 hscB co-chaperone Hsc 99.5 7.7E-14 1.7E-18 118.4 7.5 69 115-183 2-74 (166)
53 PRK03578 hscB co-chaperone Hsc 99.4 4.8E-13 1E-17 114.5 8.1 70 114-183 5-80 (176)
54 PRK00294 hscB co-chaperone Hsc 99.4 6.9E-13 1.5E-17 113.3 8.3 70 114-183 3-78 (173)
55 PRK09430 djlA Dna-J like membr 99.4 3.9E-13 8.5E-18 122.0 6.6 95 77-171 141-262 (267)
56 KOG0722 Molecular chaperone (D 99.4 1.7E-13 3.7E-18 121.8 3.2 70 113-184 31-100 (329)
57 KOG0714 Molecular chaperone (D 99.4 3E-13 6.5E-18 120.5 3.9 71 114-184 2-72 (306)
58 PTZ00100 DnaJ chaperone protei 99.3 1.9E-12 4E-17 103.5 5.3 52 114-170 64-115 (116)
59 PHA02624 large T antigen; Prov 99.2 1.1E-11 2.4E-16 122.6 4.9 60 114-178 10-71 (647)
60 PRK01773 hscB co-chaperone Hsc 99.0 6.3E-10 1.4E-14 95.1 7.4 69 115-183 2-76 (173)
61 COG5407 SEC63 Preprotein trans 99.0 3.8E-10 8.2E-15 107.4 5.0 72 114-185 97-172 (610)
62 KOG1150 Predicted molecular ch 99.0 1.5E-09 3.2E-14 93.9 7.9 78 105-182 39-120 (250)
63 TIGR00714 hscB Fe-S protein as 99.0 1.4E-09 2.9E-14 91.6 7.5 57 127-183 3-63 (157)
64 COG5269 ZUO1 Ribosome-associat 98.8 8.7E-10 1.9E-14 99.2 1.6 75 108-182 36-114 (379)
65 KOG0568 Molecular chaperone (D 98.3 9.7E-07 2.1E-11 78.2 4.8 56 115-172 47-103 (342)
66 KOG1789 Endocytosis protein RM 98.2 1.2E-06 2.6E-11 90.7 5.4 53 114-170 1280-1336(2235)
67 KOG0723 Molecular chaperone (D 98.2 3.3E-06 7.2E-11 66.2 5.1 53 115-172 56-108 (112)
68 KOG3192 Mitochondrial J-type c 97.2 0.00038 8.2E-09 58.3 4.2 71 113-183 6-82 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.6 0.0025 5.4E-08 54.4 4.2 55 115-169 113-173 (174)
70 KOG0431 Auxilin-like protein a 96.1 0.0066 1.4E-07 59.3 4.6 45 126-170 399-449 (453)
71 COG1076 DjlA DnaJ-domain-conta 95.5 0.012 2.6E-07 50.2 3.0 70 117-186 3-78 (174)
72 PF03656 Pam16: Pam16; InterP 94.2 0.084 1.8E-06 43.1 4.7 53 116-173 59-111 (127)
73 PF13446 RPT: A repeated domai 87.2 1.3 2.9E-05 31.0 4.5 27 115-141 5-31 (62)
74 KOG0724 Zuotin and related mol 85.1 0.99 2.1E-05 42.0 3.7 56 127-182 4-62 (335)
75 PF14687 DUF4460: Domain of un 79.8 3.8 8.2E-05 32.6 4.7 49 125-173 4-55 (112)
76 PF11833 DUF3353: Protein of u 77.8 4.7 0.0001 35.2 5.1 38 124-170 1-38 (194)
77 COG5552 Uncharacterized conser 51.0 49 0.0011 24.7 5.1 37 114-150 2-38 (88)
78 PRK11875 psbT photosystem II r 45.9 28 0.0006 21.5 2.6 20 239-258 8-27 (31)
79 CHL00031 psbT photosystem II p 41.4 30 0.00064 21.6 2.3 20 239-258 8-27 (33)
80 PF07709 SRR: Seven Residue Re 40.4 17 0.00037 18.1 1.0 13 158-170 2-14 (14)
81 PF01405 PsbT: Photosystem II 36.9 53 0.0012 19.9 2.9 20 239-258 8-27 (29)
82 cd01388 SOX-TCF_HMG-box SOX-TC 33.1 1.6E+02 0.0034 20.7 5.6 42 133-180 13-54 (72)
83 KOG3442 Uncharacterized conser 32.5 63 0.0014 26.4 3.6 34 117-150 61-94 (132)
84 KOG0718 Molecular chaperone (D 32.0 54 0.0012 32.6 3.7 48 95-142 51-109 (546)
85 PF12434 Malate_DH: Malate deh 31.6 53 0.0012 19.7 2.2 18 128-145 9-26 (28)
86 PF10041 DUF2277: Uncharacteri 31.0 2.1E+02 0.0046 21.3 5.8 45 114-160 2-46 (78)
87 cd00084 HMG-box High Mobility 23.5 2.3E+02 0.0049 18.7 5.3 43 133-181 12-54 (66)
88 COG0278 Glutaredoxin-related p 23.2 39 0.00084 26.6 0.8 14 1-14 19-33 (105)
89 cd01390 HMGB-UBF_HMG-box HMGB- 21.5 2.6E+02 0.0056 18.6 5.6 42 134-181 13-54 (66)
90 PF01846 FF: FF domain; Inter 21.4 2.4E+02 0.0053 18.2 4.4 14 131-144 1-14 (51)
91 PF15431 TMEM190: Transmembran 20.0 1.2E+02 0.0025 24.4 2.9 26 231-256 63-88 (134)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.9e-25 Score=204.48 Aligned_cols=74 Identities=43% Similarity=0.633 Sum_probs=69.3
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA 187 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~ 187 (259)
..+|||+||||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|+|||+|||||++|+.||+++.....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 368999999999999999999999999999999999964 69999999999999999999999999999877765
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=192.79 Aligned_cols=76 Identities=36% Similarity=0.603 Sum_probs=71.4
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR 189 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~ 189 (259)
..+|||+||||+++|+..|||+||||||++||||||+++ +.|.+.|++|+.||+|||||++|+.||..|.++....
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 468999999999999999999999999999999999987 7999999999999999999999999999997776543
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7e-21 Score=175.95 Aligned_cols=71 Identities=42% Similarity=0.692 Sum_probs=66.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS 188 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~ 188 (259)
...+|+||||+++||.+|||+|||+|+++||||||+. +.++|++|++||+|||||++|++||+++.++...
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~ 73 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG 73 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence 4689999999999999999999999999999999974 8899999999999999999999999999877743
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=177.31 Aligned_cols=71 Identities=38% Similarity=0.590 Sum_probs=65.7
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+||++||||+|+.. +.++++|++|++||+||+||++|+.||+++..+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 36999999999999999999999999999999999754 468999999999999999999999999987653
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3e-20 Score=175.59 Aligned_cols=70 Identities=37% Similarity=0.649 Sum_probs=65.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++|+.+|||+|||+||++||||+|+.. .++++|++|++||+|||||++|+.||+++..+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~--~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 46999999999999999999999999999999999754 78999999999999999999999999988654
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.1e-19 Score=172.75 Aligned_cols=69 Identities=43% Similarity=0.624 Sum_probs=65.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
.+|||+||||+++|+.+|||+|||+|+++||||+++.. +.++++|++|++||+|||||++|+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 47999999999999999999999999999999999754 5789999999999999999999999999875
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2e-19 Score=170.03 Aligned_cols=72 Identities=42% Similarity=0.618 Sum_probs=66.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA 186 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~ 186 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 36999999999999999999999999999999999754 4789999999999999999999999999886543
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3e-19 Score=168.62 Aligned_cols=72 Identities=42% Similarity=0.639 Sum_probs=66.2
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++||.+|||+|||+|+++||||+|+.....++++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 479999999999999999999999999999999997644568999999999999999999999999987543
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.8e-19 Score=167.31 Aligned_cols=70 Identities=34% Similarity=0.679 Sum_probs=65.1
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+|+. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 3699999999999999999999999999999999975 378899999999999999999999999987654
No 10
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.5e-19 Score=157.31 Aligned_cols=74 Identities=32% Similarity=0.513 Sum_probs=69.2
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS 188 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~ 188 (259)
..++|+||||+++|+.++|||+||+|+++||||+++++ +++..+|++||+||+||+||.+|..||.+|..+...
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 46899999999999999999999999999999999986 689999999999999999999999999998777654
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=9.3e-19 Score=124.99 Aligned_cols=64 Identities=53% Similarity=0.860 Sum_probs=60.4
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhh
Q 024973 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179 (259)
Q Consensus 116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD 179 (259)
|||+||||+++++.++||++|+++++++|||++......+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999988763468999999999999999999999998
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.7e-19 Score=166.68 Aligned_cols=70 Identities=41% Similarity=0.687 Sum_probs=65.6
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++||.+|||+|||+|+++||||+|+. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 4799999999999999999999999999999999985 479999999999999999999999999987654
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.3e-19 Score=165.77 Aligned_cols=70 Identities=36% Similarity=0.571 Sum_probs=65.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
+|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 6999999999999999999999999999999999764 478899999999999999999999999987654
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.76 E-value=6e-19 Score=169.00 Aligned_cols=67 Identities=36% Similarity=0.585 Sum_probs=62.1
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+||++||||+++. .++|++|++||+||+||.+|+.||.++..+
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 4799999999999999999999999999999999853 489999999999999999999999987654
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.9e-19 Score=166.60 Aligned_cols=70 Identities=41% Similarity=0.658 Sum_probs=65.1
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 4699999999999999999999999999999999975 378899999999999999999999999987643
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=7.4e-19 Score=166.54 Aligned_cols=70 Identities=43% Similarity=0.677 Sum_probs=65.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++||.+|||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 36999999999999999999999999999999999854 78999999999999999999999999987654
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=9.7e-19 Score=160.30 Aligned_cols=70 Identities=39% Similarity=0.667 Sum_probs=65.1
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 4699999999999999999999999999999999975 378999999999999999999999999987653
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=165.74 Aligned_cols=71 Identities=41% Similarity=0.648 Sum_probs=65.7
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 36999999999999999999999999999999999854 478899999999999999999999999987654
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=165.05 Aligned_cols=68 Identities=41% Similarity=0.621 Sum_probs=64.1
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ 184 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~ 184 (259)
+|||+||||+++|+.+|||+|||+|+++||||+|++ +.++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999985 47899999999999999999999999998753
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=165.25 Aligned_cols=70 Identities=46% Similarity=0.742 Sum_probs=65.4
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++|+.+|||+|||+|+++||||+|+.+ .+.++|++|++||+||+||.+|+.||.++..+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 36999999999999999999999999999999999863 78899999999999999999999999987654
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.5e-18 Score=163.75 Aligned_cols=71 Identities=38% Similarity=0.600 Sum_probs=65.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.+|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 47999999999999999999999999999999999864 468899999999999999999999999988654
No 22
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-18 Score=163.79 Aligned_cols=77 Identities=32% Similarity=0.596 Sum_probs=71.8
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR 189 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~ 189 (259)
..+.||+||||.++|+..+||++||+|||+||||||+...++++++|+.|+.||+|||||+.|+.||....+.....
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 46799999999999999999999999999999999999889999999999999999999999999999887666543
No 23
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.5e-18 Score=164.20 Aligned_cols=70 Identities=44% Similarity=0.681 Sum_probs=65.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--GADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 36999999999999999999999999999999999764 78999999999999999999999999987654
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.6e-18 Score=163.94 Aligned_cols=71 Identities=38% Similarity=0.579 Sum_probs=65.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 47999999999999999999999999999999999764 468899999999999999999999999987654
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.7e-18 Score=164.46 Aligned_cols=66 Identities=44% Similarity=0.735 Sum_probs=62.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW 180 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~ 180 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 46999999999999999999999999999999999764 4689999999999999999999999998
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.5e-18 Score=164.41 Aligned_cols=71 Identities=38% Similarity=0.612 Sum_probs=65.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 36999999999999999999999999999999999764 478999999999999999999999999987654
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.1e-18 Score=163.99 Aligned_cols=70 Identities=39% Similarity=0.612 Sum_probs=65.0
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++||.+|||+|||+|+++||||++++. +.+.++|++|++||+||+||.+|+.||+++..+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 3899999999999999999999999999999999864 478999999999999999999999999987653
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3e-18 Score=163.21 Aligned_cols=71 Identities=45% Similarity=0.688 Sum_probs=65.8
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA 186 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~ 186 (259)
.|||+||||+++|+.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 6999999999999999999999999999999999764 4688999999999999999999999999876543
No 29
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.8e-18 Score=156.83 Aligned_cols=75 Identities=43% Similarity=0.616 Sum_probs=69.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR 189 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~ 189 (259)
..|||+||||+.+|+..||++|||+.+++||||||+++. .|.++|+.|.+||+||+|+.+|..||..+..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 579999999999999999999999999999999999984 599999999999999999999999999987765443
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.1e-18 Score=160.90 Aligned_cols=71 Identities=41% Similarity=0.645 Sum_probs=65.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 46999999999999999999999999999999999754 468899999999999999999999999987654
No 31
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.6e-18 Score=154.63 Aligned_cols=69 Identities=45% Similarity=0.730 Sum_probs=66.1
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++|+..|||+||++|+++||||.|... ++.++|++|.+|||||+|+++|+.||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 4999999999999999999999999999999999986 99999999999999999999999999988765
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.5e-18 Score=159.32 Aligned_cols=71 Identities=39% Similarity=0.637 Sum_probs=66.0
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++||.+|||+|||+|+++||||+++...+.+.++|++|++||+||+|+.+|+.||.++..+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 69999999999999999999999999999999998654478999999999999999999999999987643
No 33
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.4e-18 Score=159.27 Aligned_cols=74 Identities=42% Similarity=0.614 Sum_probs=69.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP--LKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA 187 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~--~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~ 187 (259)
..+||.+|+|+++||.+|||+|||++++.|||||..++ .+.|++.|+.|.+||||||||++|.+||.+|.++..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 45899999999999999999999999999999998765 457999999999999999999999999999988865
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.1e-17 Score=158.02 Aligned_cols=69 Identities=41% Similarity=0.666 Sum_probs=64.5
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++||.+|||+|||+|+++||||+++.. .++++|++|++||+||+|+.+|+.||.++..+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK--DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--CHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 6999999999999999999999999999999998743 68899999999999999999999999987654
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.70 E-value=1.2e-17 Score=156.68 Aligned_cols=68 Identities=47% Similarity=0.700 Sum_probs=63.6
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||+||+|+.+|+.||.++..+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 69999999999999999999999999999999974 378899999999999999999999999987654
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=157.41 Aligned_cols=71 Identities=41% Similarity=0.613 Sum_probs=65.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 47999999999999999999999999999999999865 478999999999999999999999999987654
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.70 E-value=2e-17 Score=152.58 Aligned_cols=67 Identities=40% Similarity=0.776 Sum_probs=63.3
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
+|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999998754 799999999999999999999999999763
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.4e-17 Score=155.87 Aligned_cols=70 Identities=40% Similarity=0.717 Sum_probs=65.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||+||+||.+|+.||.++..+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--GAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 36999999999999999999999999999999999764 78899999999999999999999999987653
No 39
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-17 Score=145.68 Aligned_cols=73 Identities=36% Similarity=0.576 Sum_probs=66.3
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP-LKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~-~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
...++|+||||.++|+..+|++||++|++++|||+++.. ..+++++|++|+.||+||+|.++|+.||+.|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 456999999999999999999999999999999998643 3579999999999999999999999999987554
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.6e-17 Score=155.47 Aligned_cols=69 Identities=45% Similarity=0.703 Sum_probs=64.5
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++||.++||+|||+|+++||||+++. ..+.++|++|++||+||+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 589999999999999999999999999999999975 378999999999999999999999999987643
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.68 E-value=4.1e-17 Score=165.91 Aligned_cols=71 Identities=27% Similarity=0.480 Sum_probs=66.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA 186 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~ 186 (259)
..+||+||||+++||..+||+|||+||++||||+++.+ .+.++|+.|++||+|||||.+|+.||.+|..+.
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 57999999999999999999999999999999999875 688899999999999999999999999886653
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.2e-16 Score=112.20 Aligned_cols=59 Identities=44% Similarity=0.755 Sum_probs=54.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCch
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~ 173 (259)
.+||+||||+++++.++||++|+++++++|||++....+.+.+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998533578999999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.64 E-value=5.1e-16 Score=107.10 Aligned_cols=55 Identities=47% Similarity=0.799 Sum_probs=51.8
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcC
Q 024973 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN 171 (259)
Q Consensus 116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsd 171 (259)
|||+||||+++++.++||++|++|++++|||++... +.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999864 4789999999999999986
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-15 Score=129.89 Aligned_cols=69 Identities=45% Similarity=0.689 Sum_probs=64.1
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~ 182 (259)
..+||+||||+++|+.+|||+|||+++++||||+++.+...+.++|+.|++||+||+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 579999999999999999999999999999999998762248999999999999999999999999864
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.57 E-value=1.6e-15 Score=126.76 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=60.3
Q ss_pred cCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
..+|+||||+++| |.++||+|||++++++|||+++. .++|++|++||++|+|+.+|..||..+...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4679999999999 99999999999999999999743 479999999999999999999999987544
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=4.1e-15 Score=148.57 Aligned_cols=69 Identities=42% Similarity=0.639 Sum_probs=64.3
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~--eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP--DAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 5899999999999999999999999999999998763 78889999999999999999999999987544
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.9e-15 Score=128.32 Aligned_cols=71 Identities=34% Similarity=0.551 Sum_probs=65.1
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ 184 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~ 184 (259)
..-|+|+||||++++|..|||+|||+|++++||||++.. .+.++.|..|.+||+.|+|+..|+.|..++..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 457999999999999999999999999999999999875 57889999999999999999999999888643
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=8.9e-15 Score=135.40 Aligned_cols=85 Identities=29% Similarity=0.450 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhcCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHhcCchH
Q 024973 97 EQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP--LKAASEKFLKLREVYDVLSNEES 174 (259)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~--~~~a~~~f~~I~eAy~vLsdp~~ 174 (259)
+.+.++..+-.-......+|||+||||.++|+..||-+|||+++.+||||...+. .+.++++|..|..|-+||+||++
T Consensus 376 ~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 3344443333333445679999999999999999999999999999999997664 34699999999999999999999
Q ss_pred HHHhhHH
Q 024973 175 RRFYDWT 181 (259)
Q Consensus 175 R~~YD~~ 181 (259)
|+.||..
T Consensus 456 RrqFDnG 462 (504)
T KOG0624|consen 456 RRQFDNG 462 (504)
T ss_pred HhhccCC
Confidence 9999985
No 49
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-14 Score=136.92 Aligned_cols=87 Identities=34% Similarity=0.464 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhcCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchH
Q 024973 95 EEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEES 174 (259)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~ 174 (259)
+.+.++.+.+....+..+..++||.||||.++++..|||+|||++++.+|||++..+..+++.+|++|.+||.+|+||.+
T Consensus 353 s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 353 DCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred ccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677788888888888899999999999999999999999999999999999998878999999999999999999999
Q ss_pred HHHhhHH
Q 024973 175 RRFYDWT 181 (259)
Q Consensus 175 R~~YD~~ 181 (259)
|..||..
T Consensus 433 r~r~dsg 439 (486)
T KOG0550|consen 433 RVRFDSG 439 (486)
T ss_pred Hhhcccc
Confidence 9999985
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.3e-14 Score=119.89 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=60.4
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
.|||+||||++. ++..+|+++||++++++|||+..... ..+.+.|..||+||+||+||.+|..|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999996 68899999999999999999976431 2367899999999999999999999997654
No 51
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.5e-14 Score=134.73 Aligned_cols=73 Identities=29% Similarity=0.504 Sum_probs=68.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS 188 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~ 188 (259)
.+|+|.+|||+.+++.++||+.||++|...|||||..+ .|++.|+.++-||++|+|+.+|+.||..+..+...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~ 306 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--RAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENEL 306 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--hHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999965 99999999999999999999999999988666543
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=7.7e-14 Score=118.37 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=60.1
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~--~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
.|||+||||++. ++..+|+++||++++++|||+..... ..+...+..|++||+||+||.+|..|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999996 78999999999999999999986531 2344578899999999999999999988764
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=4.8e-13 Score=114.53 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=60.1
Q ss_pred ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
..|||+||||++. ++..+|+++||+|++++|||++.... ..+.+.+..||+||++|+||.+|..|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 68999999999999999999976431 1245567999999999999999999998664
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=6.9e-13 Score=113.26 Aligned_cols=70 Identities=30% Similarity=0.540 Sum_probs=61.8
Q ss_pred ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
..+||++|||++. .+..+|+++||+|++++|||++... ...+.+.+..||+||+||+||.+|..|+..+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5799999999997 6789999999999999999997653 12367789999999999999999999998765
No 55
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.40 E-value=3.9e-13 Score=122.03 Aligned_cols=95 Identities=27% Similarity=0.416 Sum_probs=74.7
Q ss_pred CcCCCCCCc-----ccccccccchHHHHHHHHHHHHHhh----------------cCCccCccceeccCCCCCHHHHHHH
Q 024973 77 WIGGSSSSS-----HQTNQNFNAEEEQKNLLGEKFADLL----------------NNSSDSHYQFLGISPSADLEEIKSA 135 (259)
Q Consensus 77 ~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Y~iLgv~~~as~~eIK~A 135 (259)
|.||.++.. ..++..+..+..++..+...+.... .....++|+||||++++|.+|||+|
T Consensus 141 ~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~a 220 (267)
T PRK09430 141 FADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRA 220 (267)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHH
Confidence 567777666 4677777788777777766544310 1233699999999999999999999
Q ss_pred HHHHHHHhCCCCCCC---c---hhHHHHHHHHHHHHHHHhcC
Q 024973 136 YRRLSKEYHPDTTSL---P---LKAASEKFLKLREVYDVLSN 171 (259)
Q Consensus 136 Yrkl~~~~HPDk~~~---~---~~~a~~~f~~I~eAy~vLsd 171 (259)
||+|+++||||++.. + .+.++++|++|++||++|+.
T Consensus 221 Yr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 221 YRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999643 1 24689999999999999985
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-13 Score=121.80 Aligned_cols=70 Identities=33% Similarity=0.693 Sum_probs=64.9
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ 184 (259)
Q Consensus 113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~ 184 (259)
...|.|+||||.++++..||++|||+|+++||||+++++ ++.+.|+.|.+||++|.|...|..||-.+..
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~--e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP--ESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc--hhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 468999999999999999999999999999999999886 6779999999999999999999999987643
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3e-13 Score=120.53 Aligned_cols=71 Identities=41% Similarity=0.696 Sum_probs=64.6
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ 184 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~ 184 (259)
..++|+||||.++|+.++|++||+++++++|||+++.+...+..+|++|.+||+||+|+.+|..||..+.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~ 72 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE 72 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence 46899999999999999999999999999999998876335666899999999999999999999999873
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.32 E-value=1.9e-12 Score=103.47 Aligned_cols=52 Identities=33% Similarity=0.465 Sum_probs=47.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLs 170 (259)
..++|+||||++++|.+|||++||+|++++|||+.. +.+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999953 4478999999999995
No 59
>PHA02624 large T antigen; Provisional
Probab=99.20 E-value=1.1e-11 Score=122.65 Aligned_cols=60 Identities=32% Similarity=0.492 Sum_probs=56.1
Q ss_pred ccCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHh
Q 024973 114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFY 178 (259)
Q Consensus 114 ~~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~Y 178 (259)
..++|++|||+++| +.++||+|||+++++||||+++ +.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46889999999999 9999999999999999999963 358999999999999999999999
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.03 E-value=6.3e-10 Score=95.09 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=59.9
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
.|||++|||++. .+...+++.|++|.+++|||+.... ...+.+.-..||+||.+|+||.+|..|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999996 8999999999999999999996543 23466788999999999999999999976654
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.99 E-value=3.8e-10 Score=107.39 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=64.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCC----chhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSL----PLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE 185 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~----~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~ 185 (259)
--|+|+||||+.+++..+||++||+|+.++||||.+. ...+-++.+++|++||+.|+|...|..|-.+|...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 4699999999999999999999999999999999765 23568899999999999999999999998876543
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-09 Score=93.86 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=68.0
Q ss_pred HHHHhhcC----CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973 105 KFADLLNN----SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW 180 (259)
Q Consensus 105 ~~~~~~~~----~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~ 180 (259)
.+.+++.. -..|+|+||.|.++.+.++||+.||+|++..|||||+++.+.|...|.-|.+||..|-|+..|+.-+.
T Consensus 39 qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 39 QIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred HHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 34555543 24799999999999999999999999999999999999988999999999999999999998877655
Q ss_pred Hh
Q 024973 181 TL 182 (259)
Q Consensus 181 ~~ 182 (259)
-.
T Consensus 119 ~y 120 (250)
T KOG1150|consen 119 VY 120 (250)
T ss_pred HH
Confidence 43
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=1.4e-09 Score=91.63 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 127 ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 127 as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
.+..+|+++||++++++|||+.... ...+.+.+..||+||++|+||.+|..|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4778999999999999999995442 22477899999999999999999999999876
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.7e-10 Score=99.20 Aligned_cols=75 Identities=29% Similarity=0.356 Sum_probs=63.8
Q ss_pred HhhcCCccCccceeccCC---CCCHHHHHHHHHHHHHHhCCCCCCCc-hhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973 108 DLLNNSSDSHYQFLGISP---SADLEEIKSAYRRLSKEYHPDTTSLP-LKAASEKFLKLREVYDVLSNEESRRFYDWTL 182 (259)
Q Consensus 108 ~~~~~~~~~~Y~iLgv~~---~as~~eIK~AYrkl~~~~HPDk~~~~-~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~ 182 (259)
....+...|+|.+|||+. -++..+|.++.++.+.+||||+.... ..+..+.|+.|+.||+||+|+.+|..||.--
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 344566789999999987 58999999999999999999997221 1367789999999999999999999999854
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.7e-07 Score=78.20 Aligned_cols=56 Identities=30% Similarity=0.641 Sum_probs=50.6
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH-HhcCc
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYD-VLSNE 172 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~-vLsdp 172 (259)
..+|.||||..+|+.++++.||.+|++++|||..... ...++|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~--adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE--ADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc--ccHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998764 67789999999998 77753
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-06 Score=90.67 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=46.6
Q ss_pred ccCccceeccCCC----CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 024973 114 SDSHYQFLGISPS----ADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170 (259)
Q Consensus 114 ~~~~Y~iLgv~~~----as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLs 170 (259)
..+.|+||.|+-+ -..+.||++|+||+.+||||||+ +..++|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHHHH
Confidence 3578999999874 34589999999999999999997 66789999999999998
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=3.3e-06 Score=66.20 Aligned_cols=53 Identities=34% Similarity=0.467 Sum_probs=46.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCc
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp 172 (259)
+..-.||||++.++.+.||.|+|++.+..|||+..++ ..-.+||||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence 3445699999999999999999999999999999776 5667899999999764
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00038 Score=58.33 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=57.2
Q ss_pred CccCccceeccCC--CCCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973 113 SSDSHYQFLGISP--SADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183 (259)
Q Consensus 113 ~~~~~Y~iLgv~~--~as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~ 183 (259)
...+||.++|... -...+.++.-|.-..++.|||+.... ..-+.+...++++||.+|.||.+|+.|=..+.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3578999998655 45777777799999999999995432 23578889999999999999999999966543
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0025 Score=54.37 Aligned_cols=55 Identities=33% Similarity=0.607 Sum_probs=48.0
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHh
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP------LKAASEKFLKLREVYDVL 169 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~------~~~a~~~f~~I~eAy~vL 169 (259)
.+.|.+||+...+...+|+++|+++...+|||+.... .+.+.+++++|++||+-+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999984321 356889999999999753
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.13 E-value=0.0066 Score=59.33 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHhc
Q 024973 126 SADLEEIKSAYRRLSKEYHPDTTSLP------LKAASEKFLKLREVYDVLS 170 (259)
Q Consensus 126 ~as~~eIK~AYrkl~~~~HPDk~~~~------~~~a~~~f~~I~eAy~vLs 170 (259)
=.+.++||++|||.+|..||||.++- .-.+++.|-.+++||+.-.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 36999999999999999999997653 1246777777777776543
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.012 Score=50.17 Aligned_cols=70 Identities=26% Similarity=0.449 Sum_probs=53.0
Q ss_pred ccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973 117 HYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA 186 (259)
Q Consensus 117 ~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~ 186 (259)
+..+.|+.+. ...+.++..|+.+.+.+|||+..... ..+.+.+..++.||.+|.||-+|..|=..+..+.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~ 78 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL 78 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence 3344444443 25566899999999999999976542 2355789999999999999999999977766444
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.20 E-value=0.084 Score=43.08 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=39.2
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCch
Q 024973 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173 (259)
Q Consensus 116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~ 173 (259)
....||||++..+.++|.+.|.+|-...+|++.++ ...=.+|..|.+.|....
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-----HHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998854 355567888888887544
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=87.20 E-value=1.3 Score=30.97 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.5
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHH
Q 024973 115 DSHYQFLGISPSADLEEIKSAYRRLSK 141 (259)
Q Consensus 115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~ 141 (259)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999877
No 74
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=0.99 Score=42.02 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---chhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973 127 ADLEEIKSAYRRLSKEYHPDTTSL---PLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182 (259)
Q Consensus 127 as~~eIK~AYrkl~~~~HPDk~~~---~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~ 182 (259)
++..+|..+|+..++..||++... ......+.+++|.+||+||++..+|...|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 577889999999999999998741 11246678999999999999977666666544
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=79.76 E-value=3.8 Score=32.63 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc---hhHHHHHHHHHHHHHHHhcCch
Q 024973 125 PSADLEEIKSAYRRLSKEYHPDTTSLP---LKAASEKFLKLREVYDVLSNEE 173 (259)
Q Consensus 125 ~~as~~eIK~AYrkl~~~~HPDk~~~~---~~~a~~~f~~I~eAy~vLsdp~ 173 (259)
+..+..+++.|-|.+-++.|||..... .+..++.++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 345778899999999999999974432 3456777888888777777654
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=77.76 E-value=4.7 Score=35.16 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 024973 124 SPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170 (259)
Q Consensus 124 ~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLs 170 (259)
+++|+.|||++|+.++..+|--| .+.-.+|-.||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd---------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD---------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHH
Confidence 57899999999999999999333 245667888887654
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=50.99 E-value=49 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=29.7
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSL 150 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~ 150 (259)
+++--+++|+.+-||..||+.|-++.+++..--..++
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 4566678899999999999999999988875544443
No 78
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=45.91 E-value=28 Score=21.45 Aligned_cols=20 Identities=15% Similarity=0.667 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 024973 239 VVIIFTFCCIIYALYFKEPY 258 (259)
Q Consensus 239 ~i~v~~~~c~l~i~~~~~~~ 258 (259)
++++..++.+.|..+|.||+
T Consensus 8 fll~~tlgiiFFAIfFRepP 27 (31)
T PRK11875 8 LILTLALVTLFFAIAFRDPP 27 (31)
T ss_pred HHHHHHHHHHHHhhhccCCC
Confidence 56666777777778888875
No 79
>CHL00031 psbT photosystem II protein T
Probab=41.35 E-value=30 Score=21.63 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 024973 239 VVIIFTFCCIIYALYFKEPY 258 (259)
Q Consensus 239 ~i~v~~~~c~l~i~~~~~~~ 258 (259)
++++..++.+.|..+|.||+
T Consensus 8 fll~~tlgilFFAI~FRePP 27 (33)
T CHL00031 8 FLLVSTLGIIFFAIFFREPP 27 (33)
T ss_pred HHHHHHHHHHHHhheecCCC
Confidence 56666777777778888875
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=40.37 E-value=17 Score=18.09 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhc
Q 024973 158 KFLKLREVYDVLS 170 (259)
Q Consensus 158 ~f~~I~eAy~vLs 170 (259)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677788887764
No 81
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=36.94 E-value=53 Score=19.95 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 024973 239 VVIIFTFCCIIYALYFKEPY 258 (259)
Q Consensus 239 ~i~v~~~~c~l~i~~~~~~~ 258 (259)
++++..++.+.+..+|.||+
T Consensus 8 ~ll~~tlgilffAI~FRePP 27 (29)
T PF01405_consen 8 FLLIGTLGILFFAIFFREPP 27 (29)
T ss_dssp HHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHhhhhccCCC
Confidence 45566666677777888875
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=33.05 E-value=1.6e+02 Score=20.72 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973 133 KSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW 180 (259)
Q Consensus 133 K~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~ 180 (259)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++...+|.
T Consensus 13 ~~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 13 SKRHRRKVLQEYPLKE------NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455677777889853 44678999999999998776655544
No 83
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=63 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=30.0
Q ss_pred ccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024973 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSL 150 (259)
Q Consensus 117 ~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~ 150 (259)
.-.||+|+...+.++|.+.|..|-....+-|.++
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3579999999999999999999999988888754
No 84
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.03 E-value=54 Score=32.63 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhhcCCccCccceecc-----------CCCCCHHHHHHHHHHHHHH
Q 024973 95 EEEQKNLLGEKFADLLNNSSDSHYQFLGI-----------SPSADLEEIKSAYRRLSKE 142 (259)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~Y~iLgv-----------~~~as~~eIK~AYrkl~~~ 142 (259)
.++.++.+.++.+-+.....+--|+++|. .+..+.+|||+-|+++.+.
T Consensus 51 AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gwEl~~r~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 51 AEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGWELGFRGKTPEEIREEYERLQRE 109 (546)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCceeecCCCCHHHHHHHHHHHHHH
Confidence 34666677666666666677777777763 3568999999999988764
No 85
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=31.64 E-value=53 Score=19.66 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 024973 128 DLEEIKSAYRRLSKEYHP 145 (259)
Q Consensus 128 s~~eIK~AYrkl~~~~HP 145 (259)
..++.|.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347889999999999993
No 86
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.98 E-value=2.1e+02 Score=21.34 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=32.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 024973 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFL 160 (259)
Q Consensus 114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~ 160 (259)
++|--.+-|+.+-+|.+||..|=.+.+++..=-..++. ...+.|.
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~--an~eaF~ 46 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA--ANAEAFD 46 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch--hhHHHHH
Confidence 44555667889999999999999999999766555543 3344443
No 87
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.52 E-value=2.3e+02 Score=18.73 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHH
Q 024973 133 KSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWT 181 (259)
Q Consensus 133 K~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~ 181 (259)
...+++.++.-||+.+ ..+..+.|.+.|..|++.++....|..
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS------VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5567777888888843 456889999999999976555544443
No 88
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=39 Score=26.65 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=12.6
Q ss_pred CccccccC-CCCCch
Q 024973 1 MFMASTVS-PQSPYS 14 (259)
Q Consensus 1 ~~~~~~~~-~~~~~~ 14 (259)
.||++|.. |+|+||
T Consensus 19 LFMKGtp~~P~CGFS 33 (105)
T COG0278 19 LFMKGTPEFPQCGFS 33 (105)
T ss_pred EEecCCCCCCCCCcc
Confidence 38999988 999999
No 89
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.53 E-value=2.6e+02 Score=18.65 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHH
Q 024973 134 SAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWT 181 (259)
Q Consensus 134 ~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~ 181 (259)
+..|..++.-||+. ...+..+.|.+.|..|++.++....+..
T Consensus 13 ~~~r~~~~~~~p~~------~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 13 QEQRPKLKKENPDA------SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHCcCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33456666778884 3557889999999999976555444443
No 90
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=21.37 E-value=2.4e+02 Score=18.25 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhC
Q 024973 131 EIKSAYRRLSKEYH 144 (259)
Q Consensus 131 eIK~AYrkl~~~~H 144 (259)
+.+.+|++|...+.
T Consensus 1 ~a~~~F~~lL~e~~ 14 (51)
T PF01846_consen 1 KAREAFKELLKEHK 14 (51)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCC
Confidence 46788888877766
No 91
>PF15431 TMEM190: Transmembrane protein 190
Probab=20.03 E-value=1.2e+02 Score=24.41 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=20.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcC
Q 024973 231 MTALTFDVVVIIFTFCCIIYALYFKE 256 (259)
Q Consensus 231 ~~~~~~~~~i~v~~~~c~l~i~~~~~ 256 (259)
..+++...+++++|.+|++|.+-+.+
T Consensus 63 aL~wtC~gll~Li~~iclFWWAkRrd 88 (134)
T PF15431_consen 63 ALGWTCGGLLLLICSICLFWWAKRRD 88 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 34577778889999999999987654
Done!