BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024974
         (259 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31525|Y1590_SYNP2 Uncharacterized protein SYNPCC7002_A1590 OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6)
           GN=SYNPCC7002_A1590 PE=4 SV=2
          Length = 192

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 98/197 (49%), Gaps = 28/197 (14%)

Query: 65  IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFL-TV 123
           +A  +P  E+P  +  +YL+D   +  A+   + +R++++  D+++++M PI F+ L   
Sbjct: 11  VALSVP--EAPRPI-QEYLQDIDCLVGAI--ADPERTEKIAPDQYQLKMRPIGFLDLYKF 65

Query: 124 KPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGAL-- 181
           +P++ +++ C    +            +  LD   ++LR LE  +K   F L V G L  
Sbjct: 66  QPIVTLKIWCDRHYQ----------VHIKSLD---YQLRGLEPFMK--GFKLDVTGRLQP 110

Query: 182 YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQ 241
            +D +  +  L+G+ ++ +   LPP L   P  + +   + +L  +++ +K ++   L++
Sbjct: 111 IADEQ-EQWLLEGEADLQVKLELPPPLWFTPKALVKKTGDRLLREILQRIKGQLLDQLVR 169

Query: 242 DYSKFKRESLNGVRHQT 258
           DY  +     NG R  +
Sbjct: 170 DYQVWA----NGTRENS 182


>sp|Q14FA9|CCSA_POPAL Cytochrome c biogenesis protein ccsA OS=Populus alba GN=ccsA PE=3
           SV=1
          Length = 321

 Score = 35.0 bits (79), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 81  QYLEDKPRVF-NAMFPD--NKQRSQRLNE-DEWRIQMLPIQFIFLTV 123
           QY+ +K  +F N  FP   N  R Q + + D W  ++L I F+FLT+
Sbjct: 189 QYMMEKKSIFKNTFFPSSRNYYRFQLIQQLDHWGFRILSIGFLFLTI 235


>sp|Q55200|SPHX_SYNY3 Protein SphX OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
           GN=sphX PE=3 SV=1
          Length = 336

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 44  SSQPLMVKNQMAVKPATYS-------SRIATDIPL-YESPGALFDQYLEDKPRVFNAMFP 95
           +SQ + +     V P T +        +   DI + +   G  F  + E K  + +A  P
Sbjct: 29  TSQSIAINGSSTVYPITEAIVADFSGGKKGVDIDVEFSGTGGGFKLFCEGKTDIADASRP 88

Query: 96  DNKQRSQRLNEDEWRIQMLPIQFIFLTV 123
            NKQ  +  N+++ R   LPI F  +TV
Sbjct: 89  INKQEMKLCNDNQVRYVELPIAFDAITV 116


>sp|B7KHY8|RL4_CYAP7 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424)
           GN=rplD PE=3 SV=1
          Length = 210

 Score = 32.7 bits (73), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 29/114 (25%)

Query: 70  PLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDM 129
           PL+   G +F      KPR +          SQ++N  E R          L ++  ++ 
Sbjct: 81  PLWRGGGVIFG----PKPRDY----------SQKMNRKERR----------LALRTALNS 116

Query: 130 RLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIK-----PSQFSLSVK 178
           +       +++ PE+PQ  TK L L +TRW + + + V+      P   SLS +
Sbjct: 117 KAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSAR 170


>sp|Q16LW2|WIBG_AEDAE Partner of Y14 and mago OS=Aedes aegypti GN=wibg PE=3 SV=1
          Length = 253

 Score = 32.0 bits (71), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 68  DIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQ 112
           ++PLYES G LF Q    KP +   M P+  Q+S+   E E RI+
Sbjct: 38  EVPLYESKGKLFAQ----KPLLPPGMSPEMAQKSREKREREQRIK 78


>sp|P75361|SMC_MYCPN Chromosome partition protein Smc OS=Mycoplasma pneumoniae (strain
           ATCC 29342 / M129) GN=smc PE=3 SV=1
          Length = 982

 Score = 31.2 bits (69), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 15/86 (17%)

Query: 81  QYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTV------KPVIDMRLRCK 134
           Q LED+  +FN  F D  ++S +L ++        +Q ++ T+      K VID++L+ +
Sbjct: 265 QLLEDQLNIFNQRFRDADEQSIKLQQE--------LQAVYQTINELEQRKAVIDVQLKNE 316

Query: 135 TGGKDYPPEVPQDITKVLELDITRWE 160
              KD   ++ Q + K++ +D  + E
Sbjct: 317 LSKKDEKHKI-QALKKLIRVDQAQLE 341


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,990,966
Number of Sequences: 539616
Number of extensions: 3591247
Number of successful extensions: 8294
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8289
Number of HSP's gapped (non-prelim): 15
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)