Query 024974
Match_columns 259
No_of_seqs 114 out of 149
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09366 DUF1997: Protein of u 100.0 1.7E-46 3.7E-51 317.8 19.1 157 77-249 2-158 (158)
2 PF06240 COXG: Carbon monoxide 98.6 1.5E-06 3.3E-11 71.6 12.4 136 69-235 3-139 (140)
3 cd07823 SRPBCC_5 Ligand-bindin 98.0 0.00022 4.8E-09 58.3 13.6 141 67-235 3-144 (146)
4 cd05018 CoxG Carbon monoxide d 97.5 0.0038 8.3E-08 49.5 12.6 140 66-235 4-143 (144)
5 COG3427 Carbon monoxide dehydr 96.6 0.033 7.2E-07 47.4 10.9 132 70-234 8-142 (146)
6 PF10604 Polyketide_cyc2: Poly 95.0 1.1 2.5E-05 34.7 13.0 132 64-235 3-138 (139)
7 cd08861 OtcD1_ARO-CYC_like N-t 92.2 2.8 6.2E-05 33.1 10.7 43 188-235 98-140 (142)
8 cd08866 SRPBCC_11 Ligand-bindi 91.6 5.7 0.00012 31.5 12.1 135 67-235 3-142 (144)
9 cd08869 START_RhoGAP C-termina 91.0 2 4.3E-05 37.5 9.2 143 67-237 48-196 (197)
10 cd08865 SRPBCC_10 Ligand-bindi 87.7 11 0.00024 28.9 12.4 37 68-107 4-40 (140)
11 cd07824 SRPBCC_6 Ligand-bindin 86.3 7.2 0.00016 31.5 9.0 41 195-235 102-146 (146)
12 cd07819 SRPBCC_2 Ligand-bindin 85.1 16 0.00034 28.4 12.0 37 65-104 4-40 (140)
13 cd08862 SRPBCC_Smu440-like Lig 82.1 21 0.00046 27.6 11.8 46 66-114 4-54 (138)
14 cd08908 START_STARD12-like C-t 78.5 16 0.00035 32.5 8.9 145 65-236 54-202 (204)
15 cd07817 SRPBCC_8 Ligand-bindin 78.1 30 0.00064 26.8 10.1 45 67-114 4-48 (139)
16 cd08905 START_STARD1-like Chol 71.4 71 0.0015 28.0 11.1 145 67-235 53-206 (209)
17 cd08874 START_STARD9-like C-te 70.5 62 0.0013 28.7 10.5 171 6-208 2-184 (205)
18 cd08904 START_STARD6-like Lipi 68.4 46 0.001 29.5 9.2 71 65-137 48-123 (204)
19 PHA02135 hypothetical protein 68.3 4.8 0.0001 32.7 2.6 24 230-253 68-91 (122)
20 cd07813 COQ10p_like Coenzyme Q 63.4 72 0.0016 25.1 11.6 60 67-130 3-64 (138)
21 cd08871 START_STARD10-like Lip 56.6 1.4E+02 0.003 26.1 13.0 146 78-252 62-212 (222)
22 cd08906 START_STARD3-like Chol 55.5 1.5E+02 0.0032 26.2 12.5 147 66-235 52-206 (209)
23 cd07812 SRPBCC START/RHO_alpha 51.4 93 0.002 22.6 10.9 40 67-109 3-42 (141)
24 PF11485 DUF3211: Protein of u 46.5 20 0.00043 30.4 2.9 47 74-124 12-58 (136)
25 cd07821 PYR_PYL_RCAR_like Pyra 37.4 1.8E+02 0.0039 22.0 10.9 38 66-106 4-41 (140)
26 cd08868 START_STARD1_3_like Ch 35.7 2.9E+02 0.0062 23.8 11.8 142 70-235 55-205 (208)
27 cd08903 START_STARD5-like Lipi 34.9 3.1E+02 0.0067 23.9 12.0 148 65-235 48-205 (208)
28 cd08876 START_1 Uncharacterize 34.7 2.7E+02 0.0059 23.3 11.0 27 209-235 168-194 (195)
29 cd08909 START_STARD13-like C-t 34.6 3.4E+02 0.0073 24.2 9.7 139 67-235 56-202 (205)
30 cd07818 SRPBCC_1 Ligand-bindin 27.8 1.3E+02 0.0029 23.7 4.9 23 66-89 5-27 (150)
31 smart00234 START in StAR and p 23.8 4.4E+02 0.0095 22.1 12.6 65 68-134 50-118 (206)
32 PF12723 DUF3809: Protein of u 21.7 4.6E+02 0.0099 22.2 6.9 32 171-206 75-106 (134)
33 PHA03376 BARF1; Provisional 21.1 4.8E+02 0.01 23.8 7.3 56 101-165 94-152 (221)
34 PF15144 DUF4576: Domain of un 20.5 51 0.0011 25.7 1.0 33 197-229 39-71 (88)
35 PF01852 START: START domain; 20.2 5.1E+02 0.011 21.6 12.8 145 71-237 54-202 (206)
No 1
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=1.7e-46 Score=317.83 Aligned_cols=157 Identities=32% Similarity=0.608 Sum_probs=151.9
Q ss_pred CcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCCcCcceeEEEEE
Q 024974 77 ALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDI 156 (259)
Q Consensus 77 ~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~~~~~~l~i~s 156 (259)
++|++||++|+||+++|| | ++++|+||||+|||+|+||+||+|+|+|+|+|+|+++++| |.|++
T Consensus 2 ~~l~~YL~~~~r~~~~~~-d-~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~--------------~~i~~ 65 (158)
T PF09366_consen 2 APLAEYLSDPQRWFSALF-D-PMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDG--------------LTIRS 65 (158)
T ss_pred CchHHHHhCchhHHHHhc-C-HHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCC--------------eEEEE
Confidence 479999999999999999 5 9999999999999999999999999999999999999997 47999
Q ss_pred eeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHHHHHH
Q 024974 157 TRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVN 236 (259)
Q Consensus 157 ~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~~rl~ 236 (259)
.+|+|+|++++++|++|+++++|.|+|.+.++.|.|+|+++|+|++++|++|+++|++++|+|||+||++|+++|++||+
T Consensus 66 ~~~~l~G~~~~~~~~~f~l~~~~~l~~~~~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~ 145 (158)
T PF09366_consen 66 LDCELRGSPLVEQNDGFSLDLQASLYPEEPPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFL 145 (158)
T ss_pred EEEEEeCCCccccCCcEEEEEEEEEEEecCCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999667999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024974 237 GSLLQDYSKFKRE 249 (259)
Q Consensus 237 ~qL~~DY~~W~~~ 249 (259)
++|++||++|+++
T Consensus 146 ~~l~~Dy~~w~~~ 158 (158)
T PF09366_consen 146 QQLQADYHRWARE 158 (158)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999985
No 2
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.55 E-value=1.5e-06 Score=71.59 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=96.8
Q ss_pred eeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCCCCcC
Q 024974 69 IPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQD 147 (259)
Q Consensus 69 ~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~~ 147 (259)
..++.+++ .+-++|.||+.+ .+|+|. -+.+|.++ ++|+.++. +++++..++.=.+.+.=...++. |
T Consensus 3 ~~v~a~~~-~vw~~l~D~~~l-~~ciPG-~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~--~------- 69 (140)
T PF06240_consen 3 FEVPAPPE-KVWAFLSDPENL-ARCIPG-VESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPES--Y------- 69 (140)
T ss_dssp EEECS-HH-HHHHHHT-HHHH-HHHSTT-EEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTE--E-------
T ss_pred EEecCCHH-HHHHHhcCHHHH-HhhCCC-cEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcc--e-------
Confidence 45666666 789999999995 679996 99999999 99999988 78888777755554443333331 1
Q ss_pred cceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHH
Q 024974 148 ITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRL 227 (259)
Q Consensus 148 ~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~I 227 (259)
+ +++.|.+.. ..+++...-.+...++++ |.|.|+++++++ .+++.+.+.+++++.+.+++++
T Consensus 70 -----~-----~~~~g~g~~---~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~~----G~la~~g~~~i~~~~~~l~~~f 131 (140)
T PF06240_consen 70 -----T-----LEFEGRGRG---GGSSASANITLSLEDDGG-TRVTWSADVEVG----GPLASLGQRLIESVARRLIEQF 131 (140)
T ss_dssp -----E-----EEEEEEECT---CCEEEEEEEEEEECCCTC-EEEEEEEEEEEE----CHHHHC-HHHHHHHHHHHHHHH
T ss_pred -----E-----eeeeccCCc---cceEEEEEEEEEcCCCCC-cEEEEEEEEEEc----cCHHHhhHHHHHHHHHHHHHHH
Confidence 1 344455554 355555555566656666 889999988765 6778888889999999999988
Q ss_pred HHHHHHHH
Q 024974 228 IEDMKQKV 235 (259)
Q Consensus 228 l~~i~~rl 235 (259)
...+..++
T Consensus 132 ~~~l~~~l 139 (140)
T PF06240_consen 132 FENLERKL 139 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888765
No 3
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.01 E-value=0.00022 Score=58.33 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=88.5
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcC-CCccCCCCCC
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKT-GGKDYPPEVP 145 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~-~G~~yp~~~~ 145 (259)
.++.+..+++ .+=++|.|+++|. +|.|. -+.++.+++++|+.++ +++..++...=...+++...+ .+.
T Consensus 3 ~~~~v~a~pe-~vw~~l~D~~~~~-~~~pg-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~------- 71 (146)
T cd07823 3 NEFTVPAPPD-RVWALLLDIERVA-PCLPG-ASLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAAR------- 71 (146)
T ss_pred ceEEecCCHH-HHHHHhcCHHHHH-hcCCC-ceeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCc-------
Confidence 3566777777 7899999999965 79985 7888889999998776 344443333223334554433 221
Q ss_pred cCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974 146 QDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT 225 (259)
Q Consensus 146 ~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~ 225 (259)
.+++. ..|.+.-.. ......+.-.|.+ .++.|.|.++++++++.-+ ..+...++++..+.+++
T Consensus 72 -----~~~~~-----~~g~~~~~~-g~~~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l----~~l~~~~v~~~~~~~~~ 134 (146)
T cd07823 72 -----RAVLE-----ATGKDARGQ-GTAEATVTLRLSP--AGGGTRVTVDTDLALTGKL----AQFGRGGIGDVAGRLLA 134 (146)
T ss_pred -----EEEEE-----EEEecCCCc-ceEEEEEEEEEEe--cCCcEEEEEEEEEEEeeEh----HHhChhHHHHHHHHHHH
Confidence 11222 223211110 1212233334444 4456889999988766555 44558889999999999
Q ss_pred HHHHHHHHHH
Q 024974 226 RLIEDMKQKV 235 (259)
Q Consensus 226 ~Il~~i~~rl 235 (259)
++++.++.|+
T Consensus 135 ~~~~~l~~~~ 144 (146)
T cd07823 135 QFAANLEARL 144 (146)
T ss_pred HHHHHHHHHh
Confidence 9999988875
No 4
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.47 E-value=0.0038 Score=49.46 Aligned_cols=140 Identities=11% Similarity=0.127 Sum_probs=84.6
Q ss_pred eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCC
Q 024974 66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVP 145 (259)
Q Consensus 66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~ 145 (259)
+.+..+..+++ .+-++|.|++++ ..++|. ...++.++++.|.+.+. +++..+...=....++...+.+.
T Consensus 4 ~~~~~i~a~~e-~v~~~l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------- 72 (144)
T cd05018 4 SGEFRIPAPPE-EVWAALNDPEVL-ARCIPG-CESLEKIGPNEYEATVK-LKVGPVKGTFKGKVELSDLDPPE------- 72 (144)
T ss_pred eeEEEecCCHH-HHHHHhcCHHHH-Hhhccc-hhhccccCCCeEEEEEE-EEEccEEEEEEEEEEEEecCCCc-------
Confidence 45566777776 789999999995 568875 88899999998887653 23221111111223333222211
Q ss_pred cCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974 146 QDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT 225 (259)
Q Consensus 146 ~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~ 225 (259)
.+.+. ..|.+.. .+ ..+.+.....+.++.|.|.+.++++ ++.++..+|..++......+++
T Consensus 73 -----~~~~~-----~~~~~~~----~~-~~~~~~~~l~~~~~gT~v~~~~~~~----~~g~l~~l~~~~~~~~~~~~~~ 133 (144)
T cd05018 73 -----SYTIT-----GEGKGGA----GF-VKGTARVTLEPDGGGTRLTYTADAQ----VGGKLAQLGSRLIDGAARKLIN 133 (144)
T ss_pred -----EEEEE-----EEEcCCC----ce-EEEEEEEEEEecCCcEEEEEEEEEE----EccChhhhCHHHHHHHHHHHHH
Confidence 11222 1221111 11 1233433333334457777777666 4467888899999999999999
Q ss_pred HHHHHHHHHH
Q 024974 226 RLIEDMKQKV 235 (259)
Q Consensus 226 ~Il~~i~~rl 235 (259)
+.++.|+.++
T Consensus 134 ~~~~~l~~~~ 143 (144)
T cd05018 134 QFFENLASKI 143 (144)
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 5
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=96.60 E-value=0.033 Score=47.45 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=72.6
Q ss_pred eecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcC--CCccCCCCCCc
Q 024974 70 PLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKT--GGKDYPPEVPQ 146 (259)
Q Consensus 70 ~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~--~G~~yp~~~~~ 146 (259)
.+..+++ .+=++|.||+. +.+|+|- =+.+|.-|| +|.+++. +++.+. =.+.-++.-.+ +-.
T Consensus 8 ~V~~p~e-~Vw~~L~dpe~-~a~ciPG-~qs~e~~g~-e~~~~v~l~ig~l~----~~~~g~~~~~~v~~~~-------- 71 (146)
T COG3427 8 RVAAPPE-AVWEFLNDPEQ-VAACIPG-VQSVETNGD-EYTAKVKLKIGPLK----GTFSGRVRFVNVDEPP-------- 71 (146)
T ss_pred EecCCHH-HHHHHhcCHHH-HHhhcCC-cceeeecCC-eEEEEEEEeeccee----EEEEEEEEEccccCCC--------
Confidence 3445555 68899999999 6789984 888999998 9988764 333333 22222222222 100
Q ss_pred CcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHH
Q 024974 147 DITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTR 226 (259)
Q Consensus 147 ~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~ 226 (259)
..++++|.+--.. .-+..+..-.+.++ +..|+|.|.++.++.. .++.+=..+++++.+.+.++
T Consensus 72 ----------~~~~i~g~G~~~~-g~~~~~~~v~l~~~--g~gt~v~w~~~~~~gg----~laqlGsr~i~~~~~kli~~ 134 (146)
T COG3427 72 ----------RSITINGSGGGAA-GFADGTVDVQLEPS--GEGTRVNWFADANVGG----KLAQLGSRLIDSVARKLINR 134 (146)
T ss_pred ----------cEEEEEeeccccc-ceeeeeeEEEEEEc--CCCcEEEEEEEccccH----HHHHHhHHHHHHHHHHHHHH
Confidence 1234455541111 22233344445444 4448999999998873 33333344444444444444
Q ss_pred HHHHHHHH
Q 024974 227 LIEDMKQK 234 (259)
Q Consensus 227 Il~~i~~r 234 (259)
+++.|+..
T Consensus 135 ~~~~l~~~ 142 (146)
T COG3427 135 FFDCLSSE 142 (146)
T ss_pred HHHHHHHH
Confidence 44444443
No 6
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=95.03 E-value=1.1 Score=34.72 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=70.8
Q ss_pred EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC-CCcEE-EEeecceeEe-EEEeEEEEEEEEEcCC-Ccc
Q 024974 64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN-EDEWR-IQMLPIQFIF-LTVKPVIDMRLRCKTG-GKD 139 (259)
Q Consensus 64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg-d~~yR-l~m~~l~ff~-~eV~PvV~lrV~~~~~-G~~ 139 (259)
+.+.++.+..+++ .+=+||.|+.++- ...|. -..++.++ ++.+. ..+. +.+ .+ +..++..-+. +..
T Consensus 3 ~~~~~~~v~a~~e-~V~~~l~d~~~~~-~w~~~-~~~~~~~~~~~~~~~~~~~---~~g~~~----~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 3 KVEVSIEVPAPPE-AVWDLLSDPENWP-RWWPG-VKSVELLSGGGPGTERTVR---VAGRGT----VREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEEESS-HH-HHHHHHTTTTGGG-GTSTT-EEEEEEEEECSTEEEEEEE---ECSCSE----EEEEEEEEETTTTE
T ss_pred EEEEEEEECCCHH-HHHHHHhChhhhh-hhhhc-eEEEEEccccccceeEEEE---eccccc----eeEEEEEecCCCcE
Confidence 3455666777777 7899999999964 45553 66777776 66643 2222 222 23 3333322222 322
Q ss_pred CCCCCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHH
Q 024974 140 YPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNV 219 (259)
Q Consensus 140 yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~t 219 (259)
+..++. +.+. .. +.+.....+.+..|.|.+..++.. ++...++..++...
T Consensus 73 ------------~~~~~~-----~~~~------~~--~~~~~~~~~~~~gt~v~~~~~~~~-----~~~~~~~~~~~~~~ 122 (139)
T PF10604_consen 73 ------------ITWRFV-----PSGF------TN--GTGRWRFEPVGDGTRVTWTVEFEP-----GLPGWLAGPLLRPA 122 (139)
T ss_dssp ------------EEEEEE-----SSSS------CE--EEEEEEEEEETTTEEEEEEEEEEE-----SCTTSCHHHHHHHH
T ss_pred ------------EEEEEE-----ecce------eE--EEEEEEEEEcCCCEEEEEEEEEEE-----eccchhhHHHHHHH
Confidence 122221 1111 11 233333333344477887777765 44455566667776
Q ss_pred HHHHHHHHHHHHHHHH
Q 024974 220 AESVLTRLIEDMKQKV 235 (259)
Q Consensus 220 G~~vL~~Il~~i~~rl 235 (259)
-...+++.++.|++.+
T Consensus 123 ~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 123 VKRIVREALENLKRAA 138 (139)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 6777777777777654
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=92.16 E-value=2.8 Score=33.15 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=29.6
Q ss_pred CcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHHHHH
Q 024974 188 TRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 188 ~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~~rl 235 (259)
+.|.|...++.... .++. ++..+++..-+..++..|+.|+.++
T Consensus 98 ~~t~Vt~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 98 GGTRVTLRHDFTLG----IDSP-EAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred CcEEEEEEEEEEEC----CCCc-hhHHHHHHHHccccHHHHHHHHHHh
Confidence 34666655555443 2222 7788888888888999999888875
No 8
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.61 E-value=5.7 Score=31.45 Aligned_cols=135 Identities=13% Similarity=0.199 Sum_probs=69.0
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC--CCcEEEEe-ecceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN--EDEWRIQM-LPIQFIFLTVKPVIDMRLRCKTGGKDYPPE 143 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg--d~~yRl~m-~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~ 143 (259)
..+.+.++++ .+=++|.|.+++ ....|. =.+++-|+ ++..+++. ....++.+.+.=.|.+++...++..
T Consensus 3 ~~~~i~a~~~-~Vw~~l~D~~~~-~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 74 (144)
T cd08866 3 ARVRVPAPPE-TVWAVLTDYDNL-AEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFP----- 74 (144)
T ss_pred EEEEECCCHH-HHHHHHhChhhH-HhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCC-----
Confidence 3566777776 788899998884 445543 44444443 23323222 3444544333223444444333200
Q ss_pred CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeE--eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHH
Q 024974 144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGAL--YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAE 221 (259)
Q Consensus 144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L--~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~ 221 (259)
+.+.+... .| + + .. ++|.. .+..+|+.|.++.++++.-.. .+|..++.....
T Consensus 75 ------~~i~~~~~----~g-~-~---~~----~~g~w~~~~~~~~~~t~v~~~~~~~~~~-------~~p~~l~~~~~~ 128 (144)
T cd08866 75 ------RELDFEMV----EG-D-F---KR----FEGSWRLEPLADGGGTLLTYEVEVKPDF-------FAPVFLVEFVLR 128 (144)
T ss_pred ------ceEEEEEc----CC-c-h---hc----eEEEEEEEECCCCCeEEEEEEEEEEeCC-------CCCHHHHHHHHH
Confidence 11122222 23 1 1 12 33433 333333467777766655332 455667777777
Q ss_pred HHHHHHHHHHHHHH
Q 024974 222 SVLTRLIEDMKQKV 235 (259)
Q Consensus 222 ~vL~~Il~~i~~rl 235 (259)
..+..+++.|+.++
T Consensus 129 ~~~~~~l~~lr~~a 142 (144)
T cd08866 129 QDLPTNLLAIRAEA 142 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777765
No 9
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=90.95 E-value=2 Score=37.50 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=80.9
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEc--CCCccCCCC
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCK--TGGKDYPPE 143 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~--~~G~~yp~~ 143 (259)
..+.|.+.++.-++.-++....|...|. +.+.+++++++++.++.. ...+ .+.-.=.|.++.+-. ++|.+
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r~~Wd~~~~--~~~vie~id~~~~i~y~~~~~p~-pv~~RDfV~~r~~~~~~~~g~~---- 120 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRERHLWDDDLL--QWKVVETLDEDTEVYQYVTNSMA-PHPTRDYVVLRTWRTDLPKGAC---- 120 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHHhccchhhh--eEEEEEEecCCcEEEEEEeeCCC-CCCCceEEEEEEEEecCCCCcE----
Confidence 3555666665344555666677888888 578899999988755432 1111 223444566766553 34432
Q ss_pred CCcCcceeEEEEEeeeeecCc--ccccCCCceeEEeeeeE-eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHH
Q 024974 144 VPQDITKVLELDITRWELRDL--ENVIKPSQFSLSVKGAL-YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVA 220 (259)
Q Consensus 144 ~~~~~~~~l~i~s~~~~l~Gl--~~v~~~~~F~l~l~g~L-~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG 220 (259)
++...++..+ ... +++ +......|.+ .|. ..+.|.|+..+.+.....+|.++ .-.+|
T Consensus 121 -------~i~~~Sv~~~-~~~p~g~V----R~~~~~~g~~i~p~-~~~~t~vty~~~~Dp~G~iP~wl-------~N~~~ 180 (197)
T cd08869 121 -------VLVETSVEHT-EPVPLGGV----RAVVLASRYLIEPC-GSGKSRVTHICRVDLRGRSPEWY-------NKVYG 180 (197)
T ss_pred -------EEEEECCcCC-CCCCCCCE----EEEEEeeeEEEEEC-CCCCeEEEEEEEECCCCCCCcee-------ecchH
Confidence 3445555321 111 323 1111122222 222 23467888888888887777665 33344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024974 221 ESVLTRLIEDMKQKVNG 237 (259)
Q Consensus 221 ~~vL~~Il~~i~~rl~~ 237 (259)
.+|-.+|+.|+..|..
T Consensus 181 -~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 181 -HLCARELLRIRDSFRQ 196 (197)
T ss_pred -hHHHHHHHHHHhhccC
Confidence 7888888888887753
No 10
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.66 E-value=11 Score=28.95 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=25.3
Q ss_pred eeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC
Q 024974 68 DIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED 107 (259)
Q Consensus 68 ~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~ 107 (259)
.+.+.++++ .+=++|.|++++ ..+.|. -..++.++++
T Consensus 4 ~~~i~ap~~-~Vw~~l~d~~~~-~~w~~~-~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVE-EVFAYLADFENA-PEWDPG-VVEVEKITDG 40 (140)
T ss_pred EEEEcCCHH-HHHHHHHCccch-hhhccC-ceEEEEcCCC
Confidence 345666666 789999999995 556654 5567766544
No 11
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.29 E-value=7.2 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=32.3
Q ss_pred EEEEEEEEEcCc----ceeccchHHHHHHHHHHHHHHHHHHHHHH
Q 024974 195 QLEMNISFVLPP----VLALIPDDVRRNVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 195 ~~dL~V~v~lP~----~l~llP~~lle~tG~~vL~~Il~~i~~rl 235 (259)
.+.+...++.+. +++.+...++....+.+|+.+++.+++++
T Consensus 102 ~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~~ 146 (146)
T cd07824 102 VVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARRL 146 (146)
T ss_pred EEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhhC
Confidence 345556666665 58888899999999999999999998873
No 12
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.13 E-value=16 Score=28.35 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=26.6
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeec
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRL 104 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~L 104 (259)
.+.++.+.++++ .|=++|.|++++ ....|. -..++.+
T Consensus 4 v~~s~~i~ap~e-~V~~~l~D~~~~-~~w~p~-~~~~~~~ 40 (140)
T cd07819 4 VSREFEIEAPPA-AVMDVLADVEAY-PEWSPK-VKSVEVL 40 (140)
T ss_pred EEEEEEEeCCHH-HHHHHHhChhhh-hhhCcc-eEEEEEe
Confidence 455677777777 799999999996 457764 5556553
No 13
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=82.09 E-value=21 Score=27.58 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=32.3
Q ss_pred eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC-----cEEEEee
Q 024974 66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED-----EWRIQML 114 (259)
Q Consensus 66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~-----~yRl~m~ 114 (259)
+..+.+.++++ .+=+|+.|++.+ ....|. -..++.++++ .|++.+.
T Consensus 4 ~~~~~i~Ap~~-~Vw~~~~d~~~~-~~w~~~-~~~~~~~~~~~~~G~~~~~~~~ 54 (138)
T cd08862 4 EATIVIDAPPE-RVWAVLTDVENW-PAWTPS-VETVRLEGPPPAVGSSFKMKPP 54 (138)
T ss_pred EEEEEEcCCHH-HHHHHHHhhhhc-ccccCc-ceEEEEecCCCCCCcEEEEecC
Confidence 45667777777 789999999996 445543 5677777765 6666554
No 14
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=78.51 E-value=16 Score=32.51 Aligned_cols=145 Identities=10% Similarity=0.093 Sum_probs=79.4
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEc--CCCccCC
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCK--TGGKDYP 141 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~--~~G~~yp 141 (259)
.+..+++.+.+...+...+++...|..-|. +...+++|+++++-++.. ..-+ -+.-.=.|.+|.+.. ++|.+
T Consensus 54 ~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~--e~~vIe~ld~~~~I~Yy~~~~Pw-P~~~RD~V~~Rs~~~~~~~g~~-- 128 (204)
T cd08908 54 WRTTIEVPAAPEEILKRLLKEQHLWDVDLL--DSKVIEILDSQTEIYQYVQNSMA-PHPARDYVVLRTWRTNLPKGAC-- 128 (204)
T ss_pred EEEEEEeCCCHHHHHHHHHhhHHHHHHHhh--heEeeEecCCCceEEEEEccCCC-CCCCcEEEEEEEEEEeCCCCeE--
Confidence 345566777666567788888888998898 578899999999844432 2221 134444667766644 34432
Q ss_pred CCCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCC-CcceEEEEEEEEEEEEcCcceeccchHHHHHHH
Q 024974 142 PEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRG-TRSRLKGQLEMNISFVLPPVLALIPDDVRRNVA 220 (259)
Q Consensus 142 ~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g-~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG 220 (259)
.+.+.|+....--...+ +... +.|.-.-++.| +.|.|.=.+.+.-+..+| .- +-+..
T Consensus 129 ---------~I~~~Sv~h~~~P~~~V----R~~~-~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP-------~W-~~N~~ 186 (204)
T cd08908 129 ---------ALLATSVDHDRAPVAGV----RVNV-LLSRYLIEPCGSGKSKLTYMCRIDLRGHMP-------EW-YTKSF 186 (204)
T ss_pred ---------EEEEeecCcccCCcCce----EEEE-EeeEEEEEECCCCcEEEEEEEEeCCCCCCc-------HH-HHhhH
Confidence 33444343221101111 1111 22222223222 345566555555554554 43 34455
Q ss_pred HHHHHHHHHHHHHHHH
Q 024974 221 ESVLTRLIEDMKQKVN 236 (259)
Q Consensus 221 ~~vL~~Il~~i~~rl~ 236 (259)
-.++..-|.+|+..|.
T Consensus 187 g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 187 GHLCAAEVVKIRDSFS 202 (204)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5677777778877774
No 15
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=78.06 E-value=30 Score=26.79 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=32.5
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML 114 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~ 114 (259)
..+.+.++++ .|-+|+.|++++ ..-.|. -..++.++++.+++++.
T Consensus 4 ~~i~I~ap~e-~V~~~~~D~~~~-~~w~~~-~~~~~~~~~~~~~~~~~ 48 (139)
T cd07817 4 KSITVNVPVE-EVYDFWRDFENL-PRFMSH-VESVEQLDDTRSHWKAK 48 (139)
T ss_pred EEEEeCCCHH-HHHHHHhChhhh-HHHhhh-hcEEEEcCCCceEEEEe
Confidence 4566777776 899999999995 445553 56677777766777763
No 16
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=71.39 E-value=71 Score=28.02 Aligned_cols=145 Identities=10% Similarity=0.105 Sum_probs=73.6
Q ss_pred eeeeecCCCCCcHHHHhccCC---ceeeeccCCCccceeecCCCcEEEEeecceeEe--EEEeEEEEEEEEEcCCCccCC
Q 024974 67 TDIPLYESPGALFDQYLEDKP---RVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIF--LTVKPVIDMRLRCKTGGKDYP 141 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~---rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~--~eV~PvV~lrV~~~~~G~~yp 141 (259)
....++.+.+..++.++.+.+ .|...|. .-+.+++++++++-++......-+ +.=.=+|.++.+...++..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~--~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~-- 128 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVK--EVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC-- 128 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceecccch--HHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE--
Confidence 445555556533457775543 4666677 466789999999866653333222 2333356667766655432
Q ss_pred CCCCcCcceeEEEEEeeeeecCcccccCCCceeEE-eee--eEeecCC-CCcceEEEEEEEEEEEEcCcceeccchHHHH
Q 024974 142 PEVPQDITKVLELDITRWELRDLENVIKPSQFSLS-VKG--ALYSDRR-GTRSRLKGQLEMNISFVLPPVLALIPDDVRR 217 (259)
Q Consensus 142 ~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~-l~g--~L~~~~~-g~~t~L~g~~dL~V~v~lP~~l~llP~~lle 217 (259)
+ +-......+.++... .-..+. ..| .+.+..+ .+.|.+++.+.+..+..+|. .++-
T Consensus 129 ---------~--~~~~s~~~~~~P~~~--~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~-------~lvN 188 (209)
T cd08905 129 ---------V--LAGMATHFGLMPEQK--GFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPK-------SIIN 188 (209)
T ss_pred ---------E--EEEEeecCCCCCCCC--CeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCH-------HHHH
Confidence 1 222223333333221 111111 112 2444332 24677888777776666664 4444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024974 218 NVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 218 ~tG~~vL~~Il~~i~~rl 235 (259)
.+.-...-..+..|++.+
T Consensus 189 ~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 189 QVLSQTQVDFANHLRQRM 206 (209)
T ss_pred HHhHHhHHHHHHHHHHHH
Confidence 443344444445555544
No 17
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=70.52 E-value=62 Score=28.71 Aligned_cols=171 Identities=12% Similarity=0.065 Sum_probs=88.8
Q ss_pred ceeeeecccChHHHHHHHhhcCCCcceeeecccCcccCCCCccee-eccCCcCceeEEEEeeeeeeecCCCCCcHHHHhc
Q 024974 6 STSLAPCHHGDRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLMV-KNQMAVKPATYSSRIATDIPLYESPGALFDQYLE 84 (259)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~a~~s~~~~v~e~~~~~i~~YL~ 84 (259)
|.-||-|.+... -|.+--.+..|++.+..+.-+ | +.+.+.+...|.+ .+.+..++. .+-+.|.
T Consensus 2 ~~~~~~~~~n~~---~l~~~~~~~gW~l~~~~~gI~--------Vy~k~~~~~~~~~~g----e~~v~as~~-~v~~ll~ 65 (205)
T cd08874 2 SIVMAACSVNLS---NLDQCQATAGWSYQCLEKDVV--------IYYKVFNGTYHGFLG----AGVIKAPLA-TVWKAVK 65 (205)
T ss_pred chhhhhhhhhHH---HHHhhhccCCcEEEecCCCEE--------EEEecCCCCcceEEE----EEEEcCCHH-HHHHHHh
Confidence 345677877652 333333456677766655433 2 2222233455553 556766665 7888887
Q ss_pred cCCc---eeeeccCCCccceeecCCCcEEEEee-cceeEe-EEEeEEEEEEEEEcCCCccCCCCCCcCcceeEEEEEeee
Q 024974 85 DKPR---VFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIF-LTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRW 159 (259)
Q Consensus 85 ~p~r---v~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~-~eV~PvV~lrV~~~~~G~~yp~~~~~~~~~~l~i~s~~~ 159 (259)
|.+. |..-+. .-+-++.++++++-++.. +..... ..=.=+|+++.+..+++.+ ++.++++..
T Consensus 66 D~~~r~~Wd~~~~--~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~-----------vi~~~SV~~ 132 (205)
T cd08874 66 DPRTRFLYDTMIK--TARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS-----------VVACQSVYD 132 (205)
T ss_pred CcchhhhhHHhhh--heeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE-----------EEEEEeccc
Confidence 7766 555444 344679999999866553 211111 1333356666666666543 445555544
Q ss_pred -eec--CcccccCCCceeEEeeeeEeec-CCC-CcceEEEEEEEEEE-EEcCcce
Q 024974 160 -ELR--DLENVIKPSQFSLSVKGALYSD-RRG-TRSRLKGQLEMNIS-FVLPPVL 208 (259)
Q Consensus 160 -~l~--Gl~~v~~~~~F~l~l~g~L~~~-~~g-~~t~L~g~~dL~V~-v~lP~~l 208 (259)
.++ +-+++ ..+.+.-.=.+.|. .+| +.|.|.-.+.+.-+ -++|.+|
T Consensus 133 ~~~P~~~~~~V---R~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l 184 (205)
T cd08874 133 KSMPEPGRSLV---RGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQL 184 (205)
T ss_pred ccCCCCCCCeE---EeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHH
Confidence 222 11233 12222111123332 113 35777777777766 5777654
No 18
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=68.42 E-value=46 Score=29.54 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=43.2
Q ss_pred eeeeeeecCCCCCcHHHHhccCCcee--eeccCCCccceeecCCCcEEEEeecceeE-e-EEEeEEEEEEEEEc-CCC
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVF--NAMFPDNKQRSQRLNEDEWRIQMLPIQFI-F-LTVKPVIDMRLRCK-TGG 137 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~--~a~~pD~~~rie~Lgd~~yRl~m~~l~ff-~-~eV~PvV~lrV~~~-~~G 137 (259)
++...-+++.++ .+-+||.+++.-. ..++- ..+-+|++++++.-+.-..-++. + +.=.=+|++|-+.. ++|
T Consensus 48 ~k~egvi~~~~e-~v~~~l~~~e~r~~Wd~~~~-~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~ 123 (204)
T cd08904 48 YRVEGIIPESPA-KLIQFMYQPEHRIKWDKSLQ-VYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGN 123 (204)
T ss_pred EEEEEEecCCHH-HHHHHHhccchhhhhccccc-ceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCC
Confidence 345556666676 5667777766522 22231 35679999999987774443332 2 34444788888766 444
No 19
>PHA02135 hypothetical protein
Probab=68.29 E-value=4.8 Score=32.66 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 024974 230 DMKQKVNGSLLQDYSKFKRESLNG 253 (259)
Q Consensus 230 ~i~~rl~~qL~~DY~~W~~~~~~~ 253 (259)
.+.+|..+.+..||++||++.+..
T Consensus 68 f~~~ry~~e~~~d~r~wc~~npg~ 91 (122)
T PHA02135 68 FFIQRYNKENNKDWRKWCRENPGK 91 (122)
T ss_pred HHHHHhhhhhhhHHHHHHhcCCCc
Confidence 467899999999999999998643
No 20
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=63.35 E-value=72 Score=25.09 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=31.1
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC--CCcEEEEeecceeEeEEEeEEEEEE
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN--EDEWRIQMLPIQFIFLTVKPVIDMR 130 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg--d~~yRl~m~~l~ff~~eV~PvV~lr 130 (259)
.++.+..+++ .+=+++.|.+++ ...+|. =..++-|+ ++.++.++ .+++.++...-+..++
T Consensus 3 ~s~~i~ap~~-~v~~~i~D~~~~-~~~~p~-~~~~~vl~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 64 (138)
T cd07813 3 KSRLVPYSAE-QMFDLVADVERY-PEFLPW-CTASRVLERDEDELEAEL-TVGFGGIRESFTSRVT 64 (138)
T ss_pred EEEEcCCCHH-HHHHHHHHHHhh-hhhcCC-ccccEEEEcCCCEEEEEE-EEeeccccEEEEEEEE
Confidence 3456666666 778888888874 334442 44444443 34444443 3444444333333333
No 21
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=56.61 E-value=1.4e+02 Score=26.15 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=71.1
Q ss_pred cHHHHhccC---CceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCCCCcCcceeEE
Q 024974 78 LFDQYLEDK---PRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLE 153 (259)
Q Consensus 78 ~i~~YL~~p---~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~~~~~~l~ 153 (259)
.+-++|.|. ..|..-|. ....++.++++..-++.. ...+. +.-.=.|.++-+...+|.+ .
T Consensus 62 ~~~~~l~D~~~r~~Wd~~~~--e~~~ie~~d~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~~~~-------------v 125 (222)
T cd08871 62 TLYDVLHDPEYRKTWDSNMI--ESFDICQLNPNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFGGEY-------------I 125 (222)
T ss_pred HHHHHHHChhhhhhhhhhhc--eeEEEEEcCCCCEEEEEEeECCCC-CCCCeEEEEEEEEeCCCEE-------------E
Confidence 566777775 33544455 356789998876543331 11111 3333345566655555532 2
Q ss_pred EEEeeeeecCcccccCCCceeEEeeeeE-eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHH
Q 024974 154 LDITRWELRDLENVIKPSQFSLSVKGAL-YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMK 232 (259)
Q Consensus 154 i~s~~~~l~Gl~~v~~~~~F~l~l~g~L-~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~ 232 (259)
|-..++..+..+.....=+-.....|.+ .+.. .+.|.+..-+.+..+ -.||..++-.++....-..+..|+
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp~-------G~IP~~lvN~~~~~~~~~~l~~l~ 197 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDPK-------GSLPKWVVNKATTKLAPKVMKKLH 197 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCCC-------CCcCHHHHHHHHHHHhHHHHHHHH
Confidence 3333333332221110001111122222 2221 223333333222222 247777777777666666666654
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 024974 233 QKVNGSLLQDYSKFKRESLN 252 (259)
Q Consensus 233 ~rl~~qL~~DY~~W~~~~~~ 252 (259)
+..+.|..|+..+.-
T Consensus 198 -----k~~~~y~~~~~~~~~ 212 (222)
T cd08871 198 -----KAALKYPEWKAKNNP 212 (222)
T ss_pred -----HHHHHHHHHHHhcCC
Confidence 567889999988743
No 22
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=55.50 E-value=1.5e+02 Score=26.16 Aligned_cols=147 Identities=8% Similarity=-0.007 Sum_probs=77.0
Q ss_pred eeeeeecCCCCCcH-HHHhccCCc---eeeeccCCCccceeecCCCcEEEEeecceeEeE--EEeEEEEEEEEEcCCCcc
Q 024974 66 ATDIPLYESPGALF-DQYLEDKPR---VFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFL--TVKPVIDMRLRCKTGGKD 139 (259)
Q Consensus 66 s~~~~v~e~~~~~i-~~YL~~p~r---v~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~--eV~PvV~lrV~~~~~G~~ 139 (259)
+..+.|..+++ .| .+-|.|.+. |...|. .-+.+++++++++-++.....+.++ .=.=+|.++-+...+..
T Consensus 52 k~~~~v~~~~~-~l~~~ll~D~~~~~~W~~~~~--~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~- 127 (209)
T cd08906 52 ILKAFMQCPAE-LVYQEVILQPEKMVLWNKTVS--ACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR- 127 (209)
T ss_pred EEEEEEcCCHH-HHHHHHHhChhhccccCccch--hhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc-
Confidence 34445555555 45 555666654 777777 4678999999998765333333322 22334666666554432
Q ss_pred CCCCCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecC-C-CCcceEEEEEEEEEEEEcCcceeccchHHHH
Q 024974 140 YPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDR-R-GTRSRLKGQLEMNISFVLPPVLALIPDDVRR 217 (259)
Q Consensus 140 yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~-~-g~~t~L~g~~dL~V~v~lP~~l~llP~~lle 217 (259)
| .+-..+....+.+....-=+....+.|...-.. . .+.|.+.+.+.+.-...| |..++.
T Consensus 128 ~------------i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l-------P~~lvN 188 (209)
T cd08906 128 Y------------VSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL-------PRYLIH 188 (209)
T ss_pred E------------EEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC-------CHHHHH
Confidence 2 112222333343333110122234556555443 2 235777777666655554 455566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024974 218 NVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 218 ~tG~~vL~~Il~~i~~rl 235 (259)
.+.-..+-..+..|++++
T Consensus 189 ~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 189 QSLAATMFEFASHLRQRI 206 (209)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655555556666666655
No 23
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=51.38 E-value=93 Score=22.64 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=27.1
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcE
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEW 109 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~y 109 (259)
..+.+.++++ .+=++|.|++++.. .+|. -+..+.++++..
T Consensus 3 ~~~~i~a~~~-~v~~~l~d~~~~~~-~~~~-~~~~~~~~~~~~ 42 (141)
T cd07812 3 ASIEIPAPPE-AVWDLLSDPERWPE-WSPG-LERVEVLGGGEG 42 (141)
T ss_pred EEEEeCCCHH-HHHHHHhChhhhhh-hCcc-cceEEEcCCCCc
Confidence 3455666666 78999999999654 5543 566777776443
No 24
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=46.48 E-value=20 Score=30.36 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEe
Q 024974 74 SPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVK 124 (259)
Q Consensus 74 ~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~ 124 (259)
+.+ .+..+|+||.=++-.+||. -+.+. .+++.|++... |..|.+++.
T Consensus 12 ~~e-~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~sF~~~g~-~~~~~~~~~ 58 (136)
T PF11485_consen 12 DIE-VVLTILSDPEFVLPRLFPP-IKSVK-VEENSFRAEGK-FGGFPFEMK 58 (136)
T ss_dssp -HH-HHHHHHT-HHHHHHHHSTT-EEEEE--STTEEEEEEE-ETTEEEEEE
T ss_pred ChH-heEEEecCCccEecccCCc-eEEEE-ecCCEEEEEEE-EeeEEEEEE
Confidence 344 7899999999999999953 36666 99999999987 444444443
No 25
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=37.36 E-value=1.8e+02 Score=22.00 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=25.2
Q ss_pred eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCC
Q 024974 66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNE 106 (259)
Q Consensus 66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd 106 (259)
...+.+..+++ .+=++|.|++.+- ...|. -..++-+++
T Consensus 4 ~~~~~i~a~~~-~V~~~l~d~~~~~-~w~~~-~~~~~~~~~ 41 (140)
T cd07821 4 TVSVTIDAPAD-KVWALLSDFGGLH-KWHPA-VASCELEGG 41 (140)
T ss_pred EEEEEECCCHH-HHHHHHhCcCchh-hhccC-cceEEeecC
Confidence 44567777776 7888999999863 45543 455665553
No 26
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=35.70 E-value=2.9e+02 Score=23.81 Aligned_cols=142 Identities=10% Similarity=0.032 Sum_probs=69.7
Q ss_pred eecCCCCCcHHHHhcc---CCceeeeccCCCccceeecCCCcEEEEeecceeEe--EEEeEEEEEEEEEcCCCccCCCCC
Q 024974 70 PLYESPGALFDQYLED---KPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIF--LTVKPVIDMRLRCKTGGKDYPPEV 144 (259)
Q Consensus 70 ~v~e~~~~~i~~YL~~---p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~--~eV~PvV~lrV~~~~~G~~yp~~~ 144 (259)
.+..++..-+..++.+ ...|...|. +...++.++++++-++...-.+++ +.-.=+|.++-+-..+|.+
T Consensus 55 ~i~~~~~~v~~~l~~d~~~~~~Wd~~~~--~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~----- 127 (208)
T cd08868 55 VLDCPAEFLYNELVLNVESLPSWNPTVL--ECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY----- 127 (208)
T ss_pred EEcCCHHHHHHHHHcCccccceecCccc--ceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE-----
Confidence 3344444223666654 344666677 467899999988755432211222 3444467777777777643
Q ss_pred CcCcceeEEEEEeeeeecCcccccCCCceeEE--eee-eEeecCCC-CcceEEEEEEEEEEEEcCcceeccchHHHHHHH
Q 024974 145 PQDITKVLELDITRWELRDLENVIKPSQFSLS--VKG-ALYSDRRG-TRSRLKGQLEMNISFVLPPVLALIPDDVRRNVA 220 (259)
Q Consensus 145 ~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~--l~g-~L~~~~~g-~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG 220 (259)
.|-..+...+..+... ...... ..| .+.+..++ +.|.+..-+.+.....+|.++ +..+.
T Consensus 128 --------~i~~~sv~h~~~P~~~--g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~l-------vN~~~ 190 (208)
T cd08868 128 --------LSSGVSVEHPAMPPTK--NYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYL-------VDQAL 190 (208)
T ss_pred --------EEEEEeccCCCCCCCC--CeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCccee-------eehhh
Confidence 2333332322222111 111111 112 23343332 357777777777666666655 44433
Q ss_pred HHHHHHHHHHHHHHH
Q 024974 221 ESVLTRLIEDMKQKV 235 (259)
Q Consensus 221 ~~vL~~Il~~i~~rl 235 (259)
-..+-..+..|+..+
T Consensus 191 ~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 191 ASVLLDFMKHLRKRI 205 (208)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444554443
No 27
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=34.94 E-value=3.1e+02 Score=23.94 Aligned_cols=148 Identities=10% Similarity=0.027 Sum_probs=74.9
Q ss_pred eeeeeeecCCCCCcHHHHhccC-----CceeeeccCCCccceeecCCCcEEEEee-cceeEe-EEEeEEEEEEEEEcCC-
Q 024974 65 IATDIPLYESPGALFDQYLEDK-----PRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIF-LTVKPVIDMRLRCKTG- 136 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p-----~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~-~eV~PvV~lrV~~~~~- 136 (259)
++....++.+.+ .|-++|.+- ..|...|. .-.-+|.++++++-+... |....+ +.=.=.|+++-+...+
T Consensus 48 ~k~e~~i~~s~~-~~~~~l~d~~~~~r~~W~~~~~--~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLE-QVWDCLKPAAGGLRVKWDQNVK--DFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHH-HHHHHHHhccchhhhhhhhccc--cEEEEEEecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCC
Confidence 445556666666 566666422 47777777 577899999999876651 111111 3333456666654443
Q ss_pred CccCCCCCCcCcceeEEEEEeeeeecCcccccCCCceeEE-eeeeEeecCCC-CcceEEEEEEEEEEEEcCcceeccchH
Q 024974 137 GKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLS-VKGALYSDRRG-TRSRLKGQLEMNISFVLPPVLALIPDD 214 (259)
Q Consensus 137 G~~yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~-l~g~L~~~~~g-~~t~L~g~~dL~V~v~lP~~l~llP~~ 214 (259)
|.+ .+.+.+.+.+..+....-=+.... ..+.+.+.+.+ ..|.+++-+.+.-...+| ..
T Consensus 125 ~~i-------------~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP-------~~ 184 (208)
T cd08903 125 GTI-------------SSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP-------QT 184 (208)
T ss_pred ceE-------------EEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC-------HH
Confidence 432 233322232222222100011122 23444444333 357777776666555555 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024974 215 VRRNVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 215 lle~tG~~vL~~Il~~i~~rl 235 (259)
++-.+.-..+-..+..+++.+
T Consensus 185 lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 185 VVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555444555555555444
No 28
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=34.73 E-value=2.7e+02 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=22.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHHH
Q 024974 209 ALIPDDVRRNVAESVLTRLIEDMKQKV 235 (259)
Q Consensus 209 ~llP~~lle~tG~~vL~~Il~~i~~rl 235 (259)
..+|..++......++..+++.+++|.
T Consensus 168 g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 168 GSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468888899888888888888888774
No 29
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=34.55 E-value=3.4e+02 Score=24.24 Aligned_cols=139 Identities=10% Similarity=0.040 Sum_probs=76.2
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEE--eecceeEeEEEeEEEEEEEEEcC--CCccCCC
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQ--MLPIQFIFLTVKPVIDMRLRCKT--GGKDYPP 142 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~--m~~l~ff~~eV~PvV~lrV~~~~--~G~~yp~ 142 (259)
..+++.+.+..-+..-|.+..-|-..+. +...+|+|++++-.++ +.... -+.-.=+|.+|-|..+ +|.+
T Consensus 56 ~~~ei~~~p~~VL~~vl~~R~~WD~~~~--~~~~ie~ld~~tdi~~y~~~~~~--P~~~RD~v~~R~w~~~~~~G~~--- 128 (205)
T cd08909 56 VSVEVEAPPSVVLNRVLRERHLWDEDFL--QWKVVETLDKQTEVYQYVLNCMA--PHPSRDFVVLRSWRTDLPKGAC--- 128 (205)
T ss_pred EEEEeCCCHHHHHHHHHhhHhhHHhhcc--eeEEEEEeCCCcEEEEEEeecCC--CCCCCEEEEEEEEEEeCCCCcE---
Confidence 4778888776455666776666777777 5889999998643332 22111 1244456888887533 4543
Q ss_pred CCCcCcceeEEEEEeee---eecCcccccCCCceeEEeeeeE-eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHH
Q 024974 143 EVPQDITKVLELDITRW---ELRDLENVIKPSQFSLSVKGAL-YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRN 218 (259)
Q Consensus 143 ~~~~~~~~~l~i~s~~~---~l~Gl~~v~~~~~F~l~l~g~L-~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~ 218 (259)
++...|+.. +..| .+ +..+-..|.+ .|..+ +.|+|.--+.+.....+|.++ .+
T Consensus 129 --------vi~~~Sv~H~~~p~~g--~V----Ra~~~~~gylI~P~~~-g~trvt~i~~vDpkG~~P~W~--------~n 185 (205)
T cd08909 129 --------SLVSVSVEHEEAPLLG--GV----RAVVLDSQYLIEPCGS-GKSRLTHICRVDLKGHSPEWY--------NK 185 (205)
T ss_pred --------EEEEecCCCCcCCCCC--cE----EEEEEcCcEEEEECCC-CCEEEEEEEEecCCCCChHHH--------HH
Confidence 334444432 2222 22 2222223332 33323 357777776666666666543 33
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024974 219 VAESVLTRLIEDMKQKV 235 (259)
Q Consensus 219 tG~~vL~~Il~~i~~rl 235 (259)
.=-.++..-|.+|+..|
T Consensus 186 ~~g~~~~~~~~~~r~sf 202 (205)
T cd08909 186 GFGHLCAAEAARIRNSF 202 (205)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 33456666666666655
No 30
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.82 E-value=1.3e+02 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=17.8
Q ss_pred eeeeeecCCCCCcHHHHhccCCce
Q 024974 66 ATDIPLYESPGALFDQYLEDKPRV 89 (259)
Q Consensus 66 s~~~~v~e~~~~~i~~YL~~p~rv 89 (259)
+.++.+..+++ .|=+|+.|++++
T Consensus 5 ~~s~~I~ap~e-~V~~~i~D~~~~ 27 (150)
T cd07818 5 ERSIVINAPPE-EVFPYVNDLKNW 27 (150)
T ss_pred EEEEEEeCCHH-HHHHHHhCcccC
Confidence 44556777777 789999999996
No 31
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=23.83 E-value=4.4e+02 Score=22.12 Aligned_cols=65 Identities=5% Similarity=-0.073 Sum_probs=35.8
Q ss_pred eeeecCCCCCcHHHHhccCC---ceeeeccCCCccceeecCCCcEEEEe-ecceeEeEEEeEEEEEEEEEc
Q 024974 68 DIPLYESPGALFDQYLEDKP---RVFNAMFPDNKQRSQRLNEDEWRIQM-LPIQFIFLTVKPVIDMRLRCK 134 (259)
Q Consensus 68 ~~~v~e~~~~~i~~YL~~p~---rv~~a~~pD~~~rie~Lgd~~yRl~m-~~l~ff~~eV~PvV~lrV~~~ 134 (259)
...+.+.+...+.++|.|.+ .|..-|. +.+.+|.+++++.-+.. ..+.+--+.-.=+|.++-+..
T Consensus 50 ~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~--~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~ 118 (206)
T smart00234 50 VGVVPMVCADLVEELMDDLRYRPEWDKNVA--KAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRE 118 (206)
T ss_pred EEEEecChHHHHHHHHhcccchhhCchhcc--cEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEE
Confidence 34444444424888998874 4666566 46778999887654332 222220122233566666555
No 32
>PF12723 DUF3809: Protein of unknown function (DUF3809); InterPro: IPR024219 This family of proteins has no known function. ; PDB: 3NQN_B.
Probab=21.74 E-value=4.6e+02 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=20.5
Q ss_pred CceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCc
Q 024974 171 SQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPP 206 (259)
Q Consensus 171 ~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~ 206 (259)
..-++.+.|.-.+..+| |.=+.++.+.+.+|.
T Consensus 75 ~~~w~ev~G~a~~~~~g----l~y~~~~r~hl~lPe 106 (134)
T PF12723_consen 75 PRPWAEVSGRARAVGDG----LAYDFEFRAHLRLPE 106 (134)
T ss_dssp TB-EEEEEEEEEE-CCC----EEEEEEEEEE-----
T ss_pred CCCeeEEeeeEEecCCc----eEEEEEEEEEEeCCC
Confidence 35588899999887666 888889999988885
No 33
>PHA03376 BARF1; Provisional
Probab=21.08 E-value=4.8e+02 Score=23.83 Aligned_cols=56 Identities=5% Similarity=0.086 Sum_probs=29.4
Q ss_pred eeecCCCcEEEEeecceeEeEEEeEEEEEE---EEEcCCCccCCCCCCcCcceeEEEEEeeeeecCcc
Q 024974 101 SQRLNEDEWRIQMLPIQFIFLTVKPVIDMR---LRCKTGGKDYPPEVPQDITKVLELDITRWELRDLE 165 (259)
Q Consensus 101 ie~Lgd~~yRl~m~~l~ff~~eV~PvV~lr---V~~~~~G~~yp~~~~~~~~~~l~i~s~~~~l~Gl~ 165 (259)
+..=++|+|+|.+..-.-=.+.++=.-.++ +....+..++|- ..|.-+.|...|.+
T Consensus 94 l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~sggfP 152 (221)
T PHA03376 94 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCTVNAFP 152 (221)
T ss_pred eeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEecCCcC
Confidence 444579999999987554444444333333 444443334542 23444556655554
No 34
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=20.51 E-value=51 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.4
Q ss_pred EEEEEEEcCcceeccchHHHHHHHHHHHHHHHH
Q 024974 197 EMNISFVLPPVLALIPDDVRRNVAESVLTRLIE 229 (259)
Q Consensus 197 dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~ 229 (259)
+-+..-++|+++.++=..++|++-+.||+.+-+
T Consensus 39 ~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR 71 (88)
T PF15144_consen 39 GKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR 71 (88)
T ss_pred CCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 345566899999999999999999999987654
No 35
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=20.21 E-value=5.1e+02 Score=21.57 Aligned_cols=145 Identities=11% Similarity=0.123 Sum_probs=78.6
Q ss_pred ecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeE-eEEEeEEEEEEEEEc-CCCccCCCCCCcC
Q 024974 71 LYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFI-FLTVKPVIDMRLRCK-TGGKDYPPEVPQD 147 (259)
Q Consensus 71 v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff-~~eV~PvV~lrV~~~-~~G~~yp~~~~~~ 147 (259)
+.+.....+..++++...|-.-+- +-..+|.+++++.-+.+- ...+- .+.-.=+|.++.+-. .+|.+
T Consensus 54 v~~~~~~~~~~~~~~~~~Wd~~~~--~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~-------- 123 (206)
T PF01852_consen 54 VPASPEQVVEDLLDDREQWDKMCV--EAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTY-------- 123 (206)
T ss_dssp ESSCHHHHHHHHHCGGGHHSTTEE--EEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEE--------
T ss_pred EcCChHHHHHHHHhhHhhcccchh--hheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceE--------
Confidence 333333368999998887766666 477899999995554442 22220 133356677887776 55543
Q ss_pred cceeEEEEEeeeeecCcccccC-CCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHH
Q 024974 148 ITKVLELDITRWELRDLENVIK-PSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTR 226 (259)
Q Consensus 148 ~~~~l~i~s~~~~l~Gl~~v~~-~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~ 226 (259)
.|-..+.+.+..+.... .=+-.+...|.+.-...++.| .+++-..+++= ..+|..++...+...+-.
T Consensus 124 -----~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~----~vt~~~~~D~~---G~iP~~~~n~~~~~~~~~ 191 (206)
T PF01852_consen 124 -----VIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT----RVTYVSQVDPK---GWIPSWLVNMVVKSQPPN 191 (206)
T ss_dssp -----EEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE----EEEEEEEEESS---SSSHHHHHHHHHHHHHHH
T ss_pred -----EEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCc----eEEEEEEECCC---CCChHHHHHHHHHHhHHH
Confidence 34444444444433110 013333344443322222222 23333333332 266777788877777777
Q ss_pred HHHHHHHHHHH
Q 024974 227 LIEDMKQKVNG 237 (259)
Q Consensus 227 Il~~i~~rl~~ 237 (259)
.+..+..++..
T Consensus 192 ~~~~~~~~~~~ 202 (206)
T PF01852_consen 192 FLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666654
Done!