Query 024974
Match_columns 259
No_of_seqs 114 out of 149
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcs_A Conserved protein; stru 96.9 0.024 8E-07 45.2 13.1 142 65-237 5-148 (162)
2 2ns9_A Hypothetical protein AP 96.7 0.023 7.7E-07 44.6 11.6 140 64-235 14-154 (157)
3 3p9v_A Uncharacterized protein 95.5 0.091 3.1E-06 42.6 9.6 142 67-243 11-153 (161)
4 1t17_A Conserved hypothetical 88.9 6.7 0.00023 30.3 11.7 38 65-105 4-41 (148)
5 3ggn_A Uncharacterized protein 86.6 10 0.00035 29.8 11.3 138 66-240 7-149 (155)
6 2d4r_A Hypothetical protein TT 66.0 35 0.0012 24.7 11.0 38 65-105 4-41 (147)
7 3nqn_A Uncharacterized protein 62.6 66 0.0023 26.7 10.2 114 60-206 3-119 (158)
8 3p0l_A Steroidogenic acute reg 54.2 91 0.0031 25.7 9.9 70 67-139 59-134 (221)
9 2pso_A STAR-related lipid tran 36.9 1.7E+02 0.0059 24.6 8.9 70 67-139 79-151 (237)
10 3p9v_A Uncharacterized protein 34.5 43 0.0015 26.4 4.3 28 221-248 123-150 (161)
11 3tvq_A Multifunctional cyclase 29.5 1.7E+02 0.0058 23.4 7.3 56 177-237 91-146 (169)
12 2yjl_A EXSB, exoenzyme S synth 27.3 2.3E+02 0.0079 22.4 8.1 67 125-203 27-105 (125)
13 2ejx_A ST0812; arcaea, unknown 26.3 45 0.0015 27.2 3.0 55 67-124 9-63 (139)
14 1xn5_A BH1534 unknown conserve 20.5 2.3E+02 0.0078 21.3 6.1 45 65-113 7-51 (146)
No 1
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=96.89 E-value=0.024 Score=45.16 Aligned_cols=142 Identities=10% Similarity=0.076 Sum_probs=81.9
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPE 143 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~ 143 (259)
.+..+.+.++++ .+=++|.||+++ ..++|. -..++.++++.|+..+. +++.+...+.-. +++...+.+.
T Consensus 5 i~~~~~i~ap~e-~Vw~~l~D~e~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~----- 74 (162)
T 2pcs_A 5 GNGSIELKGTVE-EVWSKLMDPSIL-SKCIMG-CKSLELIGEDKYKADLQIGIAAVKGKYDAI--IEVTDIKPPY----- 74 (162)
T ss_dssp EEEEEEEESCHH-HHHHHHTCHHHH-HHHSTT-EEEEEEEETTEEEEEEEECCGGGCEEEEEE--EEEEEEETTT-----
T ss_pred EeeEEEecCCHH-HHHHHhcCHHHH-HhhCCC-ceEeEEeCCCeEEEEEEEEeeeEEEEEEEE--EEEEecCCCc-----
Confidence 344566777777 789999999985 567765 66788888888987763 222233333322 2222212211
Q ss_pred CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecC-CCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHH
Q 024974 144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDR-RGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAES 222 (259)
Q Consensus 144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~-~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~ 222 (259)
.+.+... |.+.. ..+. ..+.....+ .++.|.|...+++.+ ..++..++..++..+.+.
T Consensus 75 -------~~~~~~~-----~~~~~---~~~~--~~~~~~l~~~~~~gT~v~~~~~~~~----~g~l~~~~~~l~~~~~~~ 133 (162)
T 2pcs_A 75 -------HYKLLVN-----GEGGP---GFVN--AEGVIDLTPINDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKL 133 (162)
T ss_dssp -------EEEEEEE-----EEETT---EEEE--EEEEEEEEESSSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHH
T ss_pred -------EEEEEEE-----ecCCC---ccEE--EEEEEEEEecCCCcEEEEEEEEEEE----CCCHHHhhHHHHHHHHHH
Confidence 1122221 11100 1122 233333333 344677777766654 455666777888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 024974 223 VLTRLIEDMKQKVNG 237 (259)
Q Consensus 223 vL~~Il~~i~~rl~~ 237 (259)
++++.+++++.++..
T Consensus 134 ~~~~~~~~lk~~~e~ 148 (162)
T 2pcs_A 134 LISDFFKKIQKEIAK 148 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888887764
No 2
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=96.72 E-value=0.023 Score=44.61 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=80.4
Q ss_pred EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCC
Q 024974 64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPP 142 (259)
Q Consensus 64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~ 142 (259)
+.+....+.++++ .+=+++.|++++ ..++|. -..++ ++++.|+..+. +++.+..... ..+++...+.+.
T Consensus 14 ~i~~~~~i~ap~e-~Vw~~l~D~~~~-~~w~p~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~---- 83 (157)
T 2ns9_A 14 RYEGSFEVSKTPE-EVFEFLTDPKRF-SRAFPG-FKSVE-VEDGSFTIELRLSLGPLRGDAR--VRASFEDLEKPS---- 83 (157)
T ss_dssp EEEEEEEESSCHH-HHHHHHTCHHHH-GGGSTT-EEEEE-EETTEEEEEEEEESSSSEEEEE--EEEEEEEEETTT----
T ss_pred EEeeEEEEcCCHH-HHHHHHcCHHHH-HhhCCC-ceEEE-ECCCEEEEEEEEEEcceeEEEE--EEEEEEecCCCc----
Confidence 4566667777777 789999999985 567765 56677 78888888753 2333333332 223332211211
Q ss_pred CCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHH
Q 024974 143 EVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAES 222 (259)
Q Consensus 143 ~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~ 222 (259)
+|... ....|. . ..|.....=.|.+. ++.|.|....++.++ .++..+...++....+.
T Consensus 84 ----------~i~~~-~~~~~~--~---~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~----g~l~~~~~~~~~~~~~~ 141 (157)
T 2ns9_A 84 ----------KATVK-GSGRGA--G---STLDFTLRFAVEPS--GGGSRVSWVFEGNVG----GLAASMGGRVLDSLARR 141 (157)
T ss_dssp ----------EEEEE-EEEECS--S---EEEEEEEEEEEEEE--TTEEEEEEEEEEEEE----EGGGGSCHHHHHHHHHH
T ss_pred ----------EEEEE-EEecCC--C---ccEEEEEEEEEEeC--CCcEEEEEEEEEEEC----cCHHHhhHHHHHHHHHH
Confidence 12211 111221 1 13333333344443 356778777777654 44455556778888888
Q ss_pred HHHHHHHHHHHHH
Q 024974 223 VLTRLIEDMKQKV 235 (259)
Q Consensus 223 vL~~Il~~i~~rl 235 (259)
++++.+++++.++
T Consensus 142 ~~~~~~~~lk~~~ 154 (157)
T 2ns9_A 142 MINDVISGVKREL 154 (157)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777765
No 3
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=95.49 E-value=0.091 Score=42.58 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=77.9
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCCc
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQ 146 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~ 146 (259)
-++.|..+++ .+=+++.|.++|- +++|+ -.-.+..++|.|+..+..++.-+..+.=....++....++.
T Consensus 11 ~s~~I~ap~e-~v~~lv~Dve~w~-~~yp~-~~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~-------- 79 (161)
T 3p9v_A 11 RDLEIPASYD-EVFDLLADVPKSA-SHFPK-VDKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAG-------- 79 (161)
T ss_dssp EEEEESSCHH-HHHHHHTCHHHHH-TTSTT-EEEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTT--------
T ss_pred EEEEEcCCHH-HHHHHHhChhhhH-hhCCC-eEEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCC--------
Confidence 3445566666 7889999999964 67865 66778888887777663333322222222334444444221
Q ss_pred CcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCC-cceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974 147 DITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGT-RSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT 225 (259)
Q Consensus 147 ~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~-~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~ 225 (259)
.+..+++ .| .|.-.+.|.-.-.+.+. .|.|.+.++....+.+++++ +.+...+++
T Consensus 80 ----~I~~~~~----~g--------~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll--------~~~~~~~~~ 135 (161)
T 3p9v_A 80 ----KITWSPI----KG--------EGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLL--------KLAISPVIK 135 (161)
T ss_dssp ----EEEEEEC----TT--------STTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGG--------HHHHHHHHH
T ss_pred ----EEEEEEe----cC--------ccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHH--------HHHHHHHHH
Confidence 1122222 12 22223445444333333 46787777777765555543 445555666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024974 226 RLIEDMKQKVNGSLLQDY 243 (259)
Q Consensus 226 ~Il~~i~~rl~~qL~~DY 243 (259)
.+.++|...|..++.+=|
T Consensus 136 ~~~~~~v~af~~ra~~~~ 153 (161)
T 3p9v_A 136 HEFNSLVDTYMANLKKAF 153 (161)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666554433
No 4
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=88.89 E-value=6.7 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=28.1
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN 105 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg 105 (259)
.+..+.+..+++ .+=+++.|.+++ ..++|. -..++.++
T Consensus 4 ~~~s~~i~ap~~-~v~~~v~D~~~~-p~~~p~-~~~~~v~~ 41 (148)
T 1t17_A 4 HVVTKVLPYTPD-QLFELVGDVDAY-PKFVPW-ITGMRTWN 41 (148)
T ss_dssp EEEEEEESSCTH-HHHHHHTTTTCC-SSCCSS-CCCCCEEE
T ss_pred EEEEEEecCCHH-HHHHHHHHHhhH-HhhCCC-cCeeEEEE
Confidence 445666777777 789999999994 667874 66677665
No 5
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=86.56 E-value=10 Score=29.78 Aligned_cols=138 Identities=9% Similarity=0.121 Sum_probs=67.3
Q ss_pred eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecc-eeEeEEEeEEEEEEEEEcCCCccCCCCC
Q 024974 66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPI-QFIFLTVKPVIDMRLRCKTGGKDYPPEV 144 (259)
Q Consensus 66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l-~ff~~eV~PvV~lrV~~~~~G~~yp~~~ 144 (259)
+.++.+..+++ .+=+|+.|++++ -..+|. -..++.++++.++.++.-- +...++.. .++.....+.
T Consensus 7 ~~s~~I~ap~e-~V~~~~~D~e~~-p~w~p~-~~~v~~~~~~~~~~~~~~~~G~~~~~~~----~~v~e~~p~~------ 73 (155)
T 3ggn_A 7 RDAVTIGKPAE-QLYAVWRDLPGL-PLLMTH-LRSVEVLDDKRSRWTVEAPAPLGTVSWE----AELTADEPGK------ 73 (155)
T ss_dssp EEEEEESSCHH-HHHHHHHCGGGH-HHHSTT-CCEEEECSSSEEEEEEECCTTTCEEEEE----EEEEEEETTT------
T ss_pred EEEEEEcCCHH-HHHHHHhCHHHh-HHHhhh-ceEEEEecCCeeEEEEEecCCcceEEEE----EEEEEecCCC------
Confidence 44556666676 789999999995 446654 6788899998888877542 21233332 2333222221
Q ss_pred CcCcceeEEEEEeeeee-cCcccccCCCceeEEeeee--EeecCCCCcceEEEEEEEEEEEEcCc-ceeccchHHHHHHH
Q 024974 145 PQDITKVLELDITRWEL-RDLENVIKPSQFSLSVKGA--LYSDRRGTRSRLKGQLEMNISFVLPP-VLALIPDDVRRNVA 220 (259)
Q Consensus 145 ~~~~~~~l~i~s~~~~l-~Gl~~v~~~~~F~l~l~g~--L~~~~~g~~t~L~g~~dL~V~v~lP~-~l~llP~~lle~tG 220 (259)
.| .+++ .|.... ..|. +.+.+.++.|+ +.+.+..++|. ++..+=..++....
T Consensus 74 --------~i---~~~~~~g~~~~---------~~g~~~F~~~~~~~gT~----V~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (155)
T 3ggn_A 74 --------RI---AWRSLPGARIE---------NSGEVLFRPAPGARGTE----VVVRLTYRPPGGSAGAVIARMFNQEP 129 (155)
T ss_dssp --------EE---EEEECTTCSSC---------EEEEEEEEECSSSSCEE----EEEEEEEC----------------CH
T ss_pred --------EE---EEEECCCCCcc---------eEEEEEEEECCCCCceE----EEEEEEEECCCcHHHHHHHHHhhhhH
Confidence 12 2222 232111 2332 23332233443 44455556665 34433344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024974 221 ESVLTRLIEDMKQKVNGSLL 240 (259)
Q Consensus 221 ~~vL~~Il~~i~~rl~~qL~ 240 (259)
+..++.-|+++|+.+..+|.
T Consensus 130 ~~~v~~~l~r~k~~~e~~~~ 149 (155)
T 3ggn_A 130 SQQLRDDLMRFKREQELGLE 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777766653
No 6
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=65.95 E-value=35 Score=24.73 Aligned_cols=38 Identities=5% Similarity=0.095 Sum_probs=25.5
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN 105 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg 105 (259)
.+..+.+.++++ .+=+++.|++++ ....|. -..++.++
T Consensus 4 ~~~~~~i~ap~~-~V~~~l~d~~~~-~~w~p~-~~~~~~~~ 41 (147)
T 2d4r_A 4 VRAERYIPAPPE-RVYRLAKDLEGL-KPYLKE-VESLEVVA 41 (147)
T ss_dssp EEEEEEESSCHH-HHHHHHHCHHHH-GGGCTT-EEEEEEEE
T ss_pred EEEEEEeCCCHH-HHHHHHhChhhh-hhhccc-ccEEEEEE
Confidence 445667777776 788999999985 456653 45555553
No 7
>3nqn_A Uncharacterized protein; protein with unknown function, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.88A {Deinococcus radiodurans}
Probab=62.65 E-value=66 Score=26.71 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=63.2
Q ss_pred eEEEEeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC---cEEEEeecceeEeEEEeEEEEEEEEEcCC
Q 024974 60 TYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED---EWRIQMLPIQFIFLTVKPVIDMRLRCKTG 136 (259)
Q Consensus 60 ~F~a~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~---~yRl~m~~l~ff~~eV~PvV~lrV~~~~~ 136 (259)
.|.+.++-+++.+.+.. .-..|+++|++.+...-+ =..++.=++. +.|..++=|+=..|-++ =|+.+..+
T Consensus 3 ~le~~~~F~l~~pg~~a-~A~A~l~~p~~al~~v~f--l~dL~~eg~~l~G~Lr~~~PllGEv~lPF~----Srl~~~~e 75 (158)
T 3nqn_A 3 ILSAEQSFTLRHPHGQA-AALAFVREPAAALAGVRF--LRGLDSDGEQVWGELLVTVPLLGEVDLPFR----SEIVRTPQ 75 (158)
T ss_dssp -CEEEEEEEEECTTCHH-HHHHHHHCHHHHTTTCCS--CEEEEECSSEEEEEEEEEETTTEEEEEEEE----EEEEEETT
T ss_pred eeeeeeEEEecCCCchH-HHHHHHhCHHHHhcCCcc--hhhhhhccceeEEEEEecccccceeecchh----eeeeccCC
Confidence 46777788888887654 347899999997654431 1333333433 34444443333333222 23344444
Q ss_pred CccCCCCCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCc
Q 024974 137 GKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPP 206 (259)
Q Consensus 137 G~~yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~ 206 (259)
|. .|.-++... .+|++.+.|.-.+ +....|.=+.++.+.+.+|.
T Consensus 76 Ga---------------------~L~plpl~~--~r~w~EvsG~a~~---~~g~~l~y~~~~r~hl~LPe 119 (158)
T 3nqn_A 76 GA---------------------ELRPLTLTG--ERAWVAVSGQATA---AEGGEMAFAFQFQAHLATPE 119 (158)
T ss_dssp EE---------------------EEEECCCCT--TBCEEEEEEEEEE---CGGGEEEEEEEEEEECC---
T ss_pred Cc---------------------EeeccCCCC--CcceEEeeceeec---CcCCcEEEEEEEEEEEeCCC
Confidence 42 122222222 4799999999998 22223888888888888885
No 8
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=54.22 E-value=91 Score=25.67 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=39.4
Q ss_pred eeeeecCCCCCcHHHHh-ccC---CceeeeccCCCccceeecCCCcEEEEeecceeEe--EEEeEEEEEEEEEcCCCcc
Q 024974 67 TDIPLYESPGALFDQYL-EDK---PRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIF--LTVKPVIDMRLRCKTGGKD 139 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL-~~p---~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~--~eV~PvV~lrV~~~~~G~~ 139 (259)
....+..+++ .+-++| .+. ..|-..|. +-+.++.+++++.-+....-.+.. ..=.=.|.++-+...+|.+
T Consensus 59 ~~~~v~~~~~-~v~~~l~~d~~~r~~Wd~~~~--~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~ 134 (221)
T 3p0l_A 59 LEVVVDQPME-RLYEELVERMEAMGEWNPNVK--EIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGSTC 134 (221)
T ss_dssp EEEEESSCHH-HHHHHHTTTGGGTTTSCTTCS--EEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECSSCE
T ss_pred EEEEEcCCHH-HHHHHHHhccchhhhcCcchh--eEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcCCeE
Confidence 3344555555 677766 453 33655555 356789999998765543211111 2222367788887777644
No 9
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=36.87 E-value=1.7e+02 Score=24.62 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=42.0
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEc--CCCcc
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCK--TGGKD 139 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~--~~G~~ 139 (259)
....|.+.+...+.+-|.+...|...|. +-+.+|.+++++.-++.. ...+ .+.-.=.|.+|-+-. ++|.+
T Consensus 79 ~~~~v~~~~~~v~~~ll~dr~~Wd~~~~--~~~vle~id~~~~I~y~~~~~p~-p~~~RDfv~~r~~r~~~~~g~~ 151 (237)
T 2pso_A 79 ASVEVEAPPSVVLNRVLRERHLWDEDFV--QWKVVETLDRQTEIYQYVLNSMA-PHPSRDFVVLRTWKTDLPKGMC 151 (237)
T ss_dssp EEEEESSCHHHHHHHHHHCGGGTCTTBC--CCEEEEEEETTEEEEEEEECCSS-SCCCEEEEEEEEEESCCGGGCE
T ss_pred EEEEEcCChHHHHHHHHhhhhhHHhhhc--eEEEEEEcCCCcEEEEEEecCCC-CcCCeEEEEEEEEEEECCCCEE
Confidence 3445555554356677888777877777 577899999988654432 1111 123333677887764 45543
No 10
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=34.52 E-value=43 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024974 221 ESVLTRLIEDMKQKVNGSLLQDYSKFKR 248 (259)
Q Consensus 221 ~~vL~~Il~~i~~rl~~qL~~DY~~W~~ 248 (259)
+.+++.++..+-.+...++.+.|.+=+.
T Consensus 123 ~~ll~~~~~~~~~~~~~~~v~af~~ra~ 150 (161)
T 3p9v_A 123 PSLLKLAISPVIKHEFNSLVDTYMANLK 150 (161)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777777777765443
No 11
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=29.54 E-value=1.7e+02 Score=23.43 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=36.2
Q ss_pred eeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024974 177 VKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNG 237 (259)
Q Consensus 177 l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~~rl~~ 237 (259)
+.|...-.+.+..|+|++..+..+. |+ .-.+...+...-+..+...+..||.++-.
T Consensus 91 ~~g~W~f~p~~~gt~V~~~~df~~~---~~--~p~~~~~~~~av~~~~~~~L~~LK~~aE~ 146 (169)
T 3tvq_A 91 MNLHWTYRAVAGGTEMRWVQEFDMK---PG--APFDNAHMTAHLNTTTRANMERIKKIIED 146 (169)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEC---TT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEECCCCEEEEEEEEEEec---CC--CcccHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4554444433333888888777653 21 22566667777778888888888888754
No 12
>2yjl_A EXSB, exoenzyme S synthesis protein B; lipid-binding protein, pilotin; 1.81A {Pseudomonas aeruginosa}
Probab=27.32 E-value=2.3e+02 Score=22.41 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=45.5
Q ss_pred EEEEEEEEEcCCCccCCCCCCcCcceeEEEEEeeeeecCcccccC----C---CceeEEeeeeEeecCCCCc-----ceE
Q 024974 125 PVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIK----P---SQFSLSVKGALYSDRRGTR-----SRL 192 (259)
Q Consensus 125 PvV~lrV~~~~~G~~yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~----~---~~F~l~l~g~L~~~~~g~~-----t~L 192 (259)
-.|++++..--+| |.++|.-..|++.++++.+. + ..=.|.+++.|.|.+.... .++
T Consensus 27 A~VeVs~laVveG------------R~l~Va~t~Yrv~mLPL~Fs~rL~plq~aegeLYLRarLrw~g~~aVQA~~QQkV 94 (125)
T 2yjl_A 27 AQLRLRLYAVVQG------------RMQTIAERRYRVSGLPLRYAFDLEVDRLEGEALYLRTELSWVGVAAVQASAWQQV 94 (125)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEESSSCEEEEEEEEHHHHTTCCEEEEEEEEETTCCSCCEEEEEEE
T ss_pred eEEEEEEEEEECC------------EEEEeEeeEEEeccCcEEEEEecChhhhcCccEEEEEEEeeCchHHhhhhhhhee
Confidence 4577888888888 57899999999999998863 1 1223668889999765542 344
Q ss_pred EEEEEEEEEEE
Q 024974 193 KGQLEMNISFV 203 (259)
Q Consensus 193 ~g~~dL~V~v~ 203 (259)
.+.-++.|.+.
T Consensus 95 ~n~kk~viqL~ 105 (125)
T 2yjl_A 95 AAGVDERVRLV 105 (125)
T ss_dssp CTTSEEEEECE
T ss_pred ccCceEEEEee
Confidence 44444544443
No 13
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=26.31 E-value=45 Score=27.18 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=39.0
Q ss_pred eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEe
Q 024974 67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVK 124 (259)
Q Consensus 67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~ 124 (259)
.+++...+.+ .+..-|+||.=++-.+||. .+.+...+++.|++.- .|..+.+++.
T Consensus 9 ~~i~t~hd~~-~v~~ILSDP~F~lp~llp~-~k~~~~~~~~~F~~~g-~f~~~~~~~~ 63 (139)
T 2ejx_A 9 KEIKTNQDID-VVMTIFSDPAFTIPQIFPG-IASIKCIEPEIFEAEG-KFLAFSYKVK 63 (139)
T ss_dssp EEEECSSCHH-HHHHHHTCHHHHHHHHSTT-EEEEECCSTTEEEEEE-EETTEEEEEE
T ss_pred EEeccCCChh-heEEEecCCceEehhhCCc-EEEEEecCCCeEEEEE-EEeeEEEEEE
Confidence 3444444455 7899999999999999974 4334448899999988 5555555444
No 14
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5
Probab=20.54 E-value=2.3e+02 Score=21.32 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=30.2
Q ss_pred eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEe
Q 024974 65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQM 113 (259)
Q Consensus 65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m 113 (259)
....+.+.++++ .|=++|.+|+++ ...++ +...+.-..+.|++.+
T Consensus 7 i~~~~~i~Ap~e-~Vw~altd~~~~-~~W~~--~~~~~~~~Gg~~~~~~ 51 (146)
T 1xn5_A 7 IKKEVRFNAPIE-KVWEAVSTSEGL-AFWFM--ENDLKAETGHHFHLQS 51 (146)
T ss_dssp EEEEEEESSCHH-HHHHHTTSHHHH-HTTSC--CBCCCSCTTCEEEEEC
T ss_pred EEEEEEEcCCHH-HHHHHHhChhHH-HHhcC--CCCCCccCCCEEEEEe
Confidence 445666777776 788999999774 34453 2344544567888887
Done!